RetrogeneDB ID: | retro_rnor_863 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 12:16140621..16142151(+) | ||
Located in intron of: | ENSRNOG00000024456 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Papola | ||
Ensembl ID: | ENSRNOG00000004827 | ||
Aliases: | None | ||
Description: | poly(A) polymerase alpha [Source:RefSeq peptide;Acc:NP_001101526] |
Percent Identity: | 91.37 % |
Parental protein coverage: | 69.01 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPFPVTTQGSQQTQPPQRHYGITSPISLAAPKETDCLLTQKLIETLKPFGVFEEEEELQRRILILGKLNN |
MPF.VTTQG.QQ..P....YGI.SPISLAAPK.TD..LTQKLIETL.PFGVFEEEEELQRRILIL.KLNN | |
Retrocopy | MPFAVTTQGAQQPAPAPKQYGISSPISLAAPKDTDRELTQKLIETLQPFGVFEEEEELQRRILILQKLNN |
Parental | LVKEWIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRSDFFTSFYDKLKLQ |
LVKEWIREISES.NLPQ.VIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDR.DFFTSFYDKLKLQ | |
Retrocopy | LVKEWIREISESRNLPQAVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRNDFFTSFYDKLKLQ |
Parental | EEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEI |
EEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEI | |
Retrocopy | EEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEI |
Parental | LHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLVFSKWE |
LHLVPNID.FRLTLRAIKLWAK.HNIYSNILGFLGGVSWAMLVARTCQLYPNAIASTLV.KFFLVFS.WE | |
Retrocopy | LHLVPNIDSFRLTLRAIKLWAKCHNIYSNILGFLGGVSWAMLVARTCQLYPNAIASTLVRKFFLVFSEWE |
Parental | WPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDE |
WPNPVLLK.PEE.NLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVM.EEFKQGLAIT.E | |
Retrocopy | WPNPVLLKEPEERNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMIEEFKQGLAITHE |
Parental | ILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQS |
ILL.KAEWSKLFEAP.FFQKYKHYIVLLASAPTEKQ.LEWVGLVESKIRILVGSLEKNEFITLAHVNPQS | |
Retrocopy | ILLNKAEWSKLFEAPSFFQKYKHYIVLLASAPTEKQHLEWVGLVESKIRILVGSLEKNEFITLAHVNPQS |
Parental | FPAPKESPDREEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMFELDMKIAAMHVKR |
FPAPKE..D.EEFRTMWVIGLV.KK.ENSE.LS.DLTYDIQSFTDTVYRQAINSKMFE.DMKIAAMH..R | |
Retrocopy | FPAPKENVDKEEFRTMWVIGLVLKKPENSEILSIDLTYDIQSFTDTVYRQAINSKMFEMDMKIAAMHLRR |
Parental | KQLHQLLPSHVLQKRKKHST |
K.LHQLLP.HVLQK...H.T | |
Retrocopy | KELHQLLPNHVLQKKETHLT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .29 RPM | 79 .23 RPM |
SRP017611_kidney | 0 .07 RPM | 142 .29 RPM |
SRP017611_liver | 0 .00 RPM | 81 .69 RPM |
EST ID | Start | End | Identity | Match | Mis-match | Score |
---|---|---|---|---|---|---|
CV113386 | 16140850 | 16141547 | 99.3 | 675 | 3 | 657 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000090060 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000006287 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000000946 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000010922 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000012887 | 2 retrocopies | |
Mus musculus | ENSMUSG00000021111 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000004611 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000004199 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000004827 | 1 retrocopy |
retro_rnor_863 ,
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