RetrogeneDB ID: | retro_btau_1078 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 25:39692982..39694512(+) | ||
Located in intron of: | ENSBTAG00000030690 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PAPOLA | ||
Ensembl ID: | ENSBTAG00000004054 | ||
Aliases: | PAPOLA, PAPOLB | ||
Description: | Poly(A) polymerase alpha [Source:UniProtKB/Swiss-Prot;Acc:P25500] |
Percent Identity: | 93.14 % |
Parental protein coverage: | 69.01 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPFPVTTQGSQQTQPPQKHYGITSPISLAAPKETDCLLTQKLVETLKPFGVFEEEEELQRRILILGKLNN |
MPFPVTT.G.Q.T.PP.KHYGI.SPISLA.P.ETDC.LTQKL.ETLKPFGVFEEEEELQRRILIL.KLNN | |
Retrocopy | MPFPVTTLGPQRTPPPPKHYGISSPISLAPPRETDCILTQKLIETLKPFGVFEEEEELQRRILILEKLNN |
Parental | LVKEWIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRSDFFTSFYDKLKLQ |
LVKEWIREISESK.LPQ.VIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRSDFFTSFYDKLKL. | |
Retrocopy | LVKEWIREISESKSLPQAVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRSDFFTSFYDKLKLH |
Parental | EEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEI |
EEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEI | |
Retrocopy | EEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEI |
Parental | LHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLVFSKWE |
LHLVPNIDNFRLTLRAIKLWAK.HNIYSNILGFLGGVSWAMLVARTCQLYPNAIASTLV.KFFLVFS.WE | |
Retrocopy | LHLVPNIDNFRLTLRAIKLWAKCHNIYSNILGFLGGVSWAMLVARTCQLYPNAIASTLVRKFFLVFSEWE |
Parental | WPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDE |
WPNPVLLK.PEE.NLNLPVWDPRV.PSDRYHLMPIITPAYPQQNSTYNVSVSTRMVM.EEFKQGLAIT.E | |
Retrocopy | WPNPVLLKEPEERNLNLPVWDPRVSPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMIEEFKQGLAITHE |
Parental | ILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQS |
ILLSKAEWSKLFEAP.FFQKYKHYIVLLASAPTEKQ.LEWVGLVESKIRILVGSLEKNEFITLAHVNPQS | |
Retrocopy | ILLSKAEWSKLFEAPSFFQKYKHYIVLLASAPTEKQHLEWVGLVESKIRILVGSLEKNEFITLAHVNPQS |
Parental | FPAPKENPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKR |
FPAPKE.PDKEEFRTMWVIGLV.KK.ENSE.LS.DLTYDIQSFTDTVYRQAINSKMFE.DMKIAAMH.KR | |
Retrocopy | FPAPKESPDKEEFRTMWVIGLVLKKPENSEVLSIDLTYDIQSFTDTVYRQAINSKMFEMDMKIAAMHLKR |
Parental | KQLHQLLPSHVLQKKKKHST |
K.LHQLLP.HVLQKKK..ST | |
Retrocopy | KELHQLLPNHVLQKKKTLST |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 1 .95 RPM | 76 .93 RPM |
ERP005899_muscle | 1 .16 RPM | 107 .11 RPM |
SRP017611_brain | 5 .16 RPM | 79 .57 RPM |
SRP017611_kidney | 2 .79 RPM | 126 .31 RPM |
SRP017611_liver | 1 .36 RPM | 54 .22 RPM |
SRP030211_testis | 165 .57 RPM | 200 .14 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000014142 | 1 retrocopy | |
Bos taurus | ENSBTAG00000004054 | 1 retrocopy |
retro_btau_1078 ,
|
Canis familiaris | ENSCAFG00000017783 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000006512 | 2 retrocopies | |
Homo sapiens | ENSG00000090060 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000006287 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000010922 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000018610 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000012887 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000003054 | 1 retrocopy | |
Mus musculus | ENSMUSG00000021111 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000625 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000004611 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000006128 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000006704 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000013925 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000006464 | 1 retrocopy |