Parental gene: | ENSMODG00000012887 |
| Aliases: | None |
| Description: | None |
| Organism: | Opossum (Monodelphis domestica) |
| Coordinates: | 1:325154880..325229159(-) |
>ENSMODG00000012887
ATGCCGTTTCCAGTTACAACCCAGGGATCACAACAAACACAACCGCCACAGAAGCATTATGGCATTACCTCTCCCATCAG
TTTAGCGGCCCCCAAAGAGACAGACTGCATACTCGCACAGAAACTAATTGAAACCCTAAAGCCCTTTGGGGTTTTTGAAG
AGGAAGAGGAACTGCAGCGCAGGATTTTAATTTTGGGAAAATTAAATAACCTGGTAAAAGAATGGATACGGGAAATCAGT
GAAAGCAAGAATCTTCCACAGTCTGTAATTGAAAATGTTGGAGGAAAAATTTTTACATTTGGATCCTACAGATTAGGAGT
TCATACAAAAGGTGCTGATATTGATGCATTGTGTGTTGCACCAAGACATGTTGACCGAAGTGACTTTTTCACCTCATTCT
ATGAAAAATTGAAGCTACAAGAAGAAGTAAAAGATTTGAGGGCTGTTGAAGAGGCATTTGTACCAGTTATCAAGCTATGT
TTTGATGGTATAGAGATTGATATTTTGTTTGCAAGATTAGCACTGCAGACTATTCCTGAAGATTTGGACCTTCGTGATGA
CAGTCTACTAAAAAATTTAGATATTAGATGCATAAGAAGTCTTAATGGTTGCAGGGTAACCGATGAAATTTTACATCTAG
TACCAAACATTGACAACTTCAGGTTAACTCTGAGAGCTATCAAACTTTGGGCCAAACGCCACAACATCTATTCCAATATA
TTAGGTTTCCTCGGTGGTGTTTCCTGGGCTATGCTAGTAGCAAGAACTTGCCAGCTTTATCCAAATGCAATAGCATCAAC
TCTTGTACATAAATTTTTCTTGGTATTTTCTAAATGGGAATGGCCAAATCCAGTGCTATTGAAACAACCTGAAGAATGCA
ATCTTAATTTGCCTGTATGGGACCCAAGGGTAAACCCCAGTGATAGGTACCATCTTATGCCTATAATTACACCAGCATAC
CCACAACAGAATTCTACGTACAATGTGTCCGTTTCTACACGGATGGTCATGGTTGAGGAGTTTAAACAAGGTCTTGCTAT
CACAGATGAAATTTTGCTGAGTAAGGCAGAGTGGTCCAAACTTTTTGAAGCTCCCAACTTCTTTCAAAAGTACAAGCATT
ATATTGTACTTCTAGCAAGTGCACCAACAGAAAAGCAGCGACTAGAATGGGTGGGCTTGGTGGAATCAAAAATCCGAATC
CTGGTTGGAAGTTTGGAGAAGAACGAATTTATTACACTGGCTCATGTGAATCCTCAGTCATTTCCAGCACCGAAAGAAAA
TCCTGACAAGGAAGAATTTCGTACAATGTGGGTGATTGGATTAGTGTTTAAAAAAACAGAAAACTCTGAAAACCTCAGTG
TTGACCTTACATATGACATTCAGTCTTTTACAGATACAGTTTATAGGCAAGCAATAAACAGCAAGATGTTTGAGATGGAT
ATGAAAATTGCTGCAATGCATGTAAAAAGAAGGCAACTTCATCAACTCCTACCTAATCATGTGCTTCAGAAAAAGAAAAA
GCATTCATCAGAAGTTCGATTGACAGCTCTAAATGACAGCAGTCTAGATTTGTCTATGGATAGTGACAACAGCATGTCTG
TGCCTTCTCCTACCAGTGCTATGAAGACCAGTCCATTGAATAGTTCTGGCAGCTCTCAGGGCAGAAACAGTCCTGCTCCA
GCTGTAACAGCAGCATCTGTGACCAACATCCAGGCAACTGAGGTTTCTGTGCCACAAGTAAATTCCAGTGAAAGCTCAGG
GGGTACTTCAAGTGAAAGCATTCCTCAAACTGCCACGCAGCCAGCCATTTCTCCACCACCAAAGCCTACGGTCTCCAGAG
TTGTTTCCTCAACACGTCTGGTAAACCAACCACCAAGACCTTCAGGAAACACAGCAACAAAAGTTCCTAATCCTATAGTA
GGAGTCAAAAGGACATCTTCACCTCATAAAGAAGAGAGTCCCAAGAAAACCAAAACAGAGGAGGATGAGACAAGTGAAGA
TGCCAACTGTCTTGATTTGATTGAACATGATAAACAGGAAACTAAGGAACAACTTGATACAGAAACAAGTACAACTCAAT
CTGAAACTCTTCAGACAGCGGCTCCTCTGTTGGCTGCTCAGAAAACATCCAGTACAGACCTTTCAGATATCCCTGCTCTC
CCTGCAAATCCTATTCCTGTTATCAAGAATTCAATAAAACTGAGATTGAACCGGTAA
ATGCCGTTTCCAGTTACAACCCAGGGATCACAACAAACACAACCGCCACAGAAGCATTATGGCATTACCTCTCCCATCAG
TTTAGCGGCCCCCAAAGAGACAGACTGCATACTCGCACAGAAACTAATTGAAACCCTAAAGCCCTTTGGGGTTTTTGAAG
AGGAAGAGGAACTGCAGCGCAGGATTTTAATTTTGGGAAAATTAAATAACCTGGTAAAAGAATGGATACGGGAAATCAGT
GAAAGCAAGAATCTTCCACAGTCTGTAATTGAAAATGTTGGAGGAAAAATTTTTACATTTGGATCCTACAGATTAGGAGT
TCATACAAAAGGTGCTGATATTGATGCATTGTGTGTTGCACCAAGACATGTTGACCGAAGTGACTTTTTCACCTCATTCT
ATGAAAAATTGAAGCTACAAGAAGAAGTAAAAGATTTGAGGGCTGTTGAAGAGGCATTTGTACCAGTTATCAAGCTATGT
TTTGATGGTATAGAGATTGATATTTTGTTTGCAAGATTAGCACTGCAGACTATTCCTGAAGATTTGGACCTTCGTGATGA
CAGTCTACTAAAAAATTTAGATATTAGATGCATAAGAAGTCTTAATGGTTGCAGGGTAACCGATGAAATTTTACATCTAG
TACCAAACATTGACAACTTCAGGTTAACTCTGAGAGCTATCAAACTTTGGGCCAAACGCCACAACATCTATTCCAATATA
TTAGGTTTCCTCGGTGGTGTTTCCTGGGCTATGCTAGTAGCAAGAACTTGCCAGCTTTATCCAAATGCAATAGCATCAAC
TCTTGTACATAAATTTTTCTTGGTATTTTCTAAATGGGAATGGCCAAATCCAGTGCTATTGAAACAACCTGAAGAATGCA
ATCTTAATTTGCCTGTATGGGACCCAAGGGTAAACCCCAGTGATAGGTACCATCTTATGCCTATAATTACACCAGCATAC
CCACAACAGAATTCTACGTACAATGTGTCCGTTTCTACACGGATGGTCATGGTTGAGGAGTTTAAACAAGGTCTTGCTAT
CACAGATGAAATTTTGCTGAGTAAGGCAGAGTGGTCCAAACTTTTTGAAGCTCCCAACTTCTTTCAAAAGTACAAGCATT
ATATTGTACTTCTAGCAAGTGCACCAACAGAAAAGCAGCGACTAGAATGGGTGGGCTTGGTGGAATCAAAAATCCGAATC
CTGGTTGGAAGTTTGGAGAAGAACGAATTTATTACACTGGCTCATGTGAATCCTCAGTCATTTCCAGCACCGAAAGAAAA
TCCTGACAAGGAAGAATTTCGTACAATGTGGGTGATTGGATTAGTGTTTAAAAAAACAGAAAACTCTGAAAACCTCAGTG
TTGACCTTACATATGACATTCAGTCTTTTACAGATACAGTTTATAGGCAAGCAATAAACAGCAAGATGTTTGAGATGGAT
ATGAAAATTGCTGCAATGCATGTAAAAAGAAGGCAACTTCATCAACTCCTACCTAATCATGTGCTTCAGAAAAAGAAAAA
GCATTCATCAGAAGTTCGATTGACAGCTCTAAATGACAGCAGTCTAGATTTGTCTATGGATAGTGACAACAGCATGTCTG
TGCCTTCTCCTACCAGTGCTATGAAGACCAGTCCATTGAATAGTTCTGGCAGCTCTCAGGGCAGAAACAGTCCTGCTCCA
GCTGTAACAGCAGCATCTGTGACCAACATCCAGGCAACTGAGGTTTCTGTGCCACAAGTAAATTCCAGTGAAAGCTCAGG
GGGTACTTCAAGTGAAAGCATTCCTCAAACTGCCACGCAGCCAGCCATTTCTCCACCACCAAAGCCTACGGTCTCCAGAG
TTGTTTCCTCAACACGTCTGGTAAACCAACCACCAAGACCTTCAGGAAACACAGCAACAAAAGTTCCTAATCCTATAGTA
GGAGTCAAAAGGACATCTTCACCTCATAAAGAAGAGAGTCCCAAGAAAACCAAAACAGAGGAGGATGAGACAAGTGAAGA
TGCCAACTGTCTTGATTTGATTGAACATGATAAACAGGAAACTAAGGAACAACTTGATACAGAAACAAGTACAACTCAAT
CTGAAACTCTTCAGACAGCGGCTCCTCTGTTGGCTGCTCAGAAAACATCCAGTACAGACCTTTCAGATATCCCTGCTCTC
CCTGCAAATCCTATTCCTGTTATCAAGAATTCAATAAAACTGAGATTGAACCGGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 209 .67 RPM |
| SRP007412_cerebellum | 192 .93 RPM |
| SRP007412_heart | 156 .29 RPM |
| SRP007412_kidney | 273 .90 RPM |
| SRP007412_liver | 159 .10 RPM |
| SRP007412_testis | 460 .05 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000014142 | ortholog_one2many | 1 retrogene | |
| Bos taurus | ENSBTAG00000004054 | ortholog_one2many | 1 retrogene | |
| Canis familiaris | ENSCAFG00000017783 | ortholog_one2many | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000006512 | ortholog_one2many | 2 retrogenes | |
| Homo sapiens | ENSG00000090060 | ortholog_many2many | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000006287 | ortholog_many2many | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000000946 | ortholog_one2many | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000010922 | ortholog_many2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000018610 | ortholog_one2many | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000003054 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000021111 | ortholog_many2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000000625 | ortholog_one2many | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000004611 | ortholog_many2many | 1 retrogene | |
| Procavia capensis | ENSPCAG00000004199 | ortholog_one2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000006128 | ortholog_one2many | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000006704 | ortholog_one2many | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000013925 | ortholog_one2many | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000004827 | ortholog_one2many | 1 retrogene | |
| Vicugna pacos | ENSVPAG00000006464 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mdom_1714 | 93.12 | 70.87 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_mdom_1916 | 92.31 | 84.15 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMODG00000012887 retrocopies