Parental gene:

PAPOLA, ENSG00000090060

Aliases:PAPOLA, PAP
Description:poly(A) polymerase alpha [Source:HGNC Symbol;Acc:14981]
Organism:Human (Homo sapiens)
Coordinates:14:96967769..97033448(+)


>ENSG00000090060
ATGCCGTTTCCAGTTACAACACAGGGATCACAACAAACACAACCGCCACAGAAGCACTATGGCATTACTTCTCCTATCAG
CTTAGCAGCCCCCAAGGAGACTGACTGCGTACTTACACAGAAACTAATTGAGACATTGAAACCCTTTGGGGTTTTTGAAG
AGGAAGAGGAACTGCAGCGCAGGATTTTAATTTTGGGAAAACTAAATAACCTGGTAAAAGAGTGGATACGAGAAATCAGT
GAAAGCAAGAATCTTCCACAATCTGTAATTGAAAATGTTGGAGGAAAAATTTTTACATTTGGATCTTACAGATTAGGAGT
GCATACAAAAGGTGCTGATATTGATGCGTTGTGTGTTGCACCAAGACATGTTGATCGAAGTGACTTTTTCACCTCATTCT
ATGATAAGTTGAAATTACAGGAAGAAGTAAAAGATTTAAGAGCTGTTGAAGAGGCATTCGTACCAGTTATTAAACTCTGT
TTTGATGGGATAGAGATTGATATTTTGTTTGCAAGATTAGCACTGCAGACAATTCCTGAAGATTTGGATCTACGAGATGA
CAGTCTGCTAAAAAATTTAGATATAAGATGTATAAGAAGTCTTAACGGTTGCAGGGTAACCGATGAAATTTTACATCTAG
TACCAAACATTGACAACTTCAGGTTAACTCTGAGAGCTATCAAACTATGGGCCAAACGCCACAACATCTATTCCAATATA
TTAGGTTTCCTCGGTGGTGTTTCCTGGGCTATGCTAGTAGCAAGAACTTGCCAGCTTTATCCAAATGCAATAGCATCAAC
TCTTGTACATAAATTTTTCTTGGTATTTTCTAAATGGGAATGGCCAAATCCAGTGCTATTGAAACAGCCTGAAGAATGCA
ATCTTAATTTGCCTGTATGGGACCCAAGGGTAAACCCCAGTGATAGGTACCATCTTATGCCTATAATTACACCAGCATAC
CCACAACAGAACTCCACGTACAATGTGTCCGTTTCAACACGGATGGTCATGGTTGAGGAGTTTAAACAAGGTCTTGCTAT
CACAGATGAAATTTTGCTGAGTAAGGCAGAGTGGTCCAAACTTTTTGAAGCTCCAAACTTCTTTCAAAAGTACAAGCATT
ATATTGTACTTCTAGCAAGTGCACCAACAGAAAAACAACGCCTGGAATGGGTGGGCTTGGTGGAATCAAAAATCCGAATC
CTGGTTGGAAGCTTGGAGAAGAATGAATTTATTACACTGGCTCATGTGAATCCCCAGTCATTTCCAGCACCCAAAGAAAA
TCCCGACAAGGAAGAATTTCGCACGATGTGGGTGATTGGGTTAGTGTTTAAAAAAACAGAAAACTCTGAAAACCTCAGTG
TTGATCTCACCTATGATATTCAGTCTTTCACAGATACAGTTTATAGGCAAGCAATAAACAGCAAGATGTTTGAGGTGGAT
ATGAAAATTGCTGCAATGCATGTAAAAAGAAAGCAACTCCATCAACTACTACCTAATCATGTGCTTCAGAAAAAGAAAAA
GCATTCAACAGAAGGTGTCAAATTGACAGCTCTCAATGACAGCAGCCTCGACTTGTCTATGGACAGTGATAACAGCATGT
CTGTGCCTTCACCTACTAGTGCTACGAAGACCAGTCCATTGAACAGTTCTGGCAGCTCTCAGGGCAGAAACAGTCCTGCT
CCAGCTGTAACAGCAGCATCTGTGACCAACATACAGGCTACTGAAGTTTCTGTGCCACAAGTAAATTCCAGTGAAAGCTC
AGGGGGTACATCGAGTGAAAGCATTCCTCAAACTGCCACACAACCAGCCATTTCTCCACCACCAAAGCCTACGGTCTCCA
GAGTTGTTTCTTCAACACGTCTGGTAAACCCACCACCTAGATCTTCAGGAAATGCAGCAACTTCAGGAAATGCAGCAACA
AAAATACCTACTCCTATAGTAGGAGTCAAGAGGACATCCTCACCTCATAAAGAAGAGAGTCCCAAGAAAACCAAAACAGA
AGAGGATGAAACAAGTGAAGATGCTAACTGTCTTGCTTTGAGTGGACATGATAAAACAGAAGCAAAGGAACAACTTGATA
CAGAGACAAGTACAACTCAATCAGAAACTATTCAGACAGCGGCTTCTCTGTTGGCCTCTCAGAAAACATCCAGTACAGAC
CTTTCTGATATCCCTGCTCTCCCTGCAAATCCTATTCCTGTTATCAAGAATTCAATAAAACTGAGATTGAATCGGTAA

Library Parental gene expression (RPM)
bodymap2_liver 99 .68 RPM
bodymap2_lung 174 .75 RPM
bodymap2_breast 136 .85 RPM
bodymap2_adipose 158 .61 RPM
bodymap2_adrenal 187 .15 RPM
bodymap2_skeletal_muscle 93 .94 RPM
bodymap2_thyroid 188 .99 RPM
bodymap2_prostate 240 .77 RPM
bodymap2_colon 264 .22 RPM
bodymap2_testis 285 .45 RPM
bodymap2_brain 100 .09 RPM
bodymap2_heart 147 .41 RPM
bodymap2_white_blood_cells 355 .96 RPM
bodymap2_lymph_node 311 .33 RPM
bodymap2_ovary 299 .56 RPM
bodymap2_kidney 216 .61 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014142 ortholog_one2one 1 retrogene
retro_amel_517,
Bos taurus ENSBTAG00000004054 ortholog_one2one 1 retrogene
retro_btau_1078,
Canis familiaris ENSCAFG00000017783 ortholog_one2one 1 retrogene
retro_cfam_1783,
Callithrix jacchus ENSCJAG00000006512 ortholog_one2one 2 retrogenes
retro_cjac_1763, retro_cjac_543,
Gorilla gorilla ENSGGOG00000006287 ortholog_one2one 1 retrogene
retro_ggor_202,
Loxodonta africana ENSLAFG00000000946 possible_ortholog 1 retrogene
retro_lafr_895,
Myotis lucifugus ENSMLUG00000010922 ortholog_one2one 1 retrogene
retro_mluc_1396,
Macaca mulatta ENSMMUG00000018610 ortholog_one2one 1 retrogene
retro_mmul_1675,
Monodelphis domestica ENSMODG00000012887 ortholog_many2many 2 retrogenes
retro_mdom_1714, retro_mdom_1916,
Mustela putorius furo ENSMPUG00000003054 ortholog_one2one 1 retrogene
retro_mputfur_1375,
Mus musculus ENSMUSG00000021111 possible_ortholog 1 retrogene
retro_mmus_37,
Nomascus leucogenys ENSNLEG00000000625 ortholog_one2one 1 retrogene
retro_nleu_2771,
Otolemur garnettii ENSOGAG00000004611 ortholog_one2one 1 retrogene
retro_ogar_987,
Procavia capensis ENSPCAG00000004199 possible_ortholog 1 retrogene
retro_pcap_91,
Pongo abelii ENSPPYG00000006128 ortholog_one2one 1 retrogene
retro_pabe_3113,
Pan troglodytes ENSPTRG00000006704 ortholog_one2one 1 retrogene
retro_ptro_2595,
Pteropus vampyrus ENSPVAG00000013925 ortholog_one2one 1 retrogene
retro_pvam_360,
Rattus norvegicus ENSRNOG00000004827 possible_ortholog 1 retrogene
retro_rnor_863,
Vicugna pacos ENSVPAG00000006464 ortholog_one2one 1 retrogene
retro_vpac_378,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_30 86.08 83.89
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Download FASTA sequences of all ENSG00000090060 retrocopies