RetrogeneDB ID: | retro_sara_277 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_143410:9608..9995(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2L3 | ||
Ensembl ID: | ENSSARG00000005137 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2L 3 [Source:HGNC Symbol;Acc:12488] |
Percent Identity: | 54.14 % |
Parental protein coverage: | 90.34 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | EEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE |
EEI.KCGM..F.NIQVDEANLL..Q...VP.N..Y....FR...NFP.EYPFK..KITF.TKI.HP.... | |
Retrocopy | EEIHKCGMNTFCNIQVDEANLLSQQWNFVPNNFSYNEWVFRV*MNFPEEYPFKLQKITFETKIRHPKSNR |
Parental | KGQVCLPVISAENWKPATKTDQV-IQSLIALVNDPQPEHPLRADLAEEYSKDRK-KFCKNAEE |
K...C..V.SAEN.K...K...V.IQ........P..EHPL.A.L.EEY.K....KFCKNA.E | |
Retrocopy | K--ECVSVTSAEN*KQTPKNNEV<IQPSLH**TTPRIEHPLWAVLGEEYPKGGR>KFCKNAKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000019274 | 1 retrocopy | |
Homo sapiens | ENSG00000185651 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000001547 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000192 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000002610 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000011602 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000014114 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000013575 | 1 retrocopy | |
Sorex araneus | ENSSARG00000005137 | 3 retrocopies |
retro_sara_105, retro_sara_277 , retro_sara_653,
|
Ictidomys tridecemlineatus | ENSSTOG00000016293 | 2 retrocopies | |
Tetraodon nigroviridis | ENSTNIG00000010600 | 1 retrocopy | |
Takifugu rubripes | ENSTRUG00000003392 | 1 retrocopy |