RetrogeneDB ID: | retro_itri_1528 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393527.1:2052280..2052676(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2L3 | ||
Ensembl ID: | ENSSTOG00000016293 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2L 3 [Source:HGNC Symbol;Acc:12488] |
Percent Identity: | 77.54 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MKNFRNIQVDEANLLT-WQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFK-TKIYHPNIDEKGQVC |
MK.F..IQVDEANLL..WQ.LIVPDNPPYDKGAFRI.INF.AEYPFK.PKITFK.TKIYHPN.DEK.QVC | |
Retrocopy | MKSFHYIQVDEANLLI<WQRLIVPDNPPYDKGAFRIKINFSAEYPFKSPKITFK>TKIYHPNTDEKWQVC |
Parental | LPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD |
LPVISAENW.PATKT.Q.I.SLIA....PQ..H.L..DL.EE.SK.RKKFCKN.EEF.KKYGEK.PVD | |
Retrocopy | LPVISAENWMPATKTNQAILSLIA----PQTMHLLWVDLIEEFSKERKKFCKNTEEFSKKYGEK*PVD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000019274 | 1 retrocopy | |
Homo sapiens | ENSG00000185651 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000001547 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000192 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000002610 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000011602 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000014114 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000013575 | 1 retrocopy | |
Sorex araneus | ENSSARG00000005137 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000013481 | 6 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000016293 | 2 retrocopies |
retro_itri_1528 , retro_itri_655,
|
Ictidomys tridecemlineatus | ENSSTOG00000025799 | 2 retrocopies | |
Tetraodon nigroviridis | ENSTNIG00000010600 | 1 retrocopy | |
Takifugu rubripes | ENSTRUG00000003392 | 1 retrocopy |