RetrogeneDB ID: | retro_shar_325 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL841344.1:429425..430278(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSHAG00000008496 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | VDAC2 | ||
Ensembl ID: | ENSSHAG00000012048 | ||
Aliases: | None | ||
Description: | voltage-dependent anion channel 2 [Source:HGNC Symbol;Acc:12672] |
Percent Identity: | 95.79 % |
Parental protein coverage: | 96.93 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | SMCVPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFTSSGSSNTDTGKVSGTLETKYKWCEYGL |
.MCVPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSG.EF.S.GSSNTDTGKVSGTLETKYKWCEYGL | |
Retrocopy | AMCVPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGLEFISLGSSNTDTGKVSGTLETKYKWCEYGL |
Parental | TFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGK-IKSSYKRECINLGCDIDFDFAGPAI |
TFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGK.IKSSYKRECINLGCDIDFDFA.PAI | |
Retrocopy | TFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGK>IKSSYKRECINLGCDIDFDFAVPAI |
Parental | HGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQLHTNVNDGTEFGGSIYQKVCEDLDTSVNL |
HGSA.FGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQLHTNVNDGTEFGGSIYQKVCEDLD.SVNL | |
Retrocopy | HGSAIFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQLHTNVNDGTEFGGSIYQKVCEDLDISVNL |
Parental | AWTSGTNCTRFGIAAKYQLDETASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSINAGGHKLGLA |
.WTS.TNCTRFGI.AKYQLDETASISAKVNNSSLIGVGYTQTLRPGVKL.LSALVDGKSINAGGHKLGLA | |
Retrocopy | DWTSDTNCTRFGIEAKYQLDETASISAKVNNSSLIGVGYTQTLRPGVKLMLSALVDGKSINAGGHKLGLA |
Parental | LELEA |
LELEA | |
Retrocopy | LELEA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000012975 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000015398 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000001145 | 1 retrocopy | |
Felis catus | ENSFCAG00000026943 | 3 retrocopies | |
Homo sapiens | ENSG00000165637 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000005861 | 5 retrocopies | |
Macropus eugenii | ENSMEUG00000012995 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007500 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000003268 | 1 retrocopy | |
Mus musculus | ENSMUSG00000021771 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000030039 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000013505 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000012048 | 1 retrocopy |
retro_shar_325 ,
|
Sarcophilus harrisii | ENSSHAG00000017953 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001946 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000004764 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000008068 | 1 retrocopy |