Parental gene:

VDAC2, ENSCJAG00000001145

Aliases:None
Description:voltage-dependent anion channel 2 [Source:HGNC Symbol;Acc:12672]
Organism:Marmoset (Callithrix jacchus)
Coordinates:12:48789395..48808253(-)


>ENSCJAG00000001145
ATGGCTACCCACGGACAGACTTGCGCGCGGCCTATGTGTATTCCTCCATCATATGCTGACCTTGGCAAAGCTGCCAGAGA
TATTTTCAACAAAGGATTTGGTTTTGGGTTGGTGAAACTGGATGTGAAAACAAAGTCTTGCAGTGGCGTGGAATTCTCAA
CGTCTGGCTCATCTAATACAGACACTGGTAAAGTTACTGGTACCTTGGAGACCAAATATAAGTGGTGTGAGTATGGTCTG
ACTTTCACAGAAAAATGGAACACTGATAACACTCTGGGAACAGAAATCGCAATTGAAGACCAGATTTGTCAAGGTTTGAA
ACTGACATTTGATACTACCTTCTCACCAAACACAGGAAAGAAAAGTGGTAAAATCAAGTCCTCTTACAAGAGGGAGTGTA
TAAACCTTGGTTGTGATGTTGACTTTGATTTTGCTGGACCTGCAATCCATGGTTCAGCTGTCTTTGGTTATGAAGGCTGG
CTTGCTGGGTACCAGATGACCTTTGACAGTGCCAAATCAAAGCTGACAAGGAGTAACTTTGCAGTGGGCTATAGGACTGG
GGACTTCCAGCTACACACTAATGTCAATGATGGGACAGAATTTGGAGGATCAATATATCAGAAAGTATGTGAAGGTCTTG
ACACTTCAGTAAACCTTGCTTGGACATCAGGTACCAACTGCACTCGTTTTGGCATTGCAGCTAAATATCAGTTGGATCCT
ACTGCTTCCATTTCTGCAAAAGTCAACAACTCTAGCTTAATTGGAGTAGGCTACACTCAGACGCTGAGGCCTGGTGTGAA
GCTTACACTGTCTGCGTTGGTAGACGGGAAGAGCATTAATGCTGGAGGCCACAAGCTTGGGCTTGCCCTGGAGTTGGAGG
CTTAA

Library Parental gene expression (RPM)
SRP051959_spleen 34 .58 RPM
SRP051959_skeletal_muscle 120 .00 RPM
SRP051959_lymph_node 32 .14 RPM
SRP051959_lung 30 .94 RPM
SRP051959_liver 47 .11 RPM
SRP051959_kidney 65 .78 RPM
SRP051959_heart 81 .67 RPM
SRP051959_colon 49 .61 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000012975 ortholog_one2one 2 retrogenes
retro_btau_1252, retro_btau_1389,
Canis familiaris ENSCAFG00000015398 ortholog_one2one 1 retrogene
retro_cfam_376,
Callithrix jacchus ENSCJAG00000013556 within_species_paralog 8 retrogenes
retro_cjac_1216, retro_cjac_1669, retro_cjac_1728, retro_cjac_2677, retro_cjac_3183, retro_cjac_3864, retro_cjac_454, retro_cjac_907,
Felis catus ENSFCAG00000026943 ortholog_one2one 3 retrogenes
retro_fcat_1385, retro_fcat_804, retro_fcat_815,
Homo sapiens ENSG00000165637 ortholog_one2one 1 retrogene
retro_hsap_2114,
Gorilla gorilla ENSGGOG00000005861 ortholog_one2one 5 retrogenes
retro_ggor_1677, retro_ggor_1949, retro_ggor_2934, retro_ggor_3036, retro_ggor_425,
Macropus eugenii ENSMEUG00000012995 possible_ortholog 1 retrogene
retro_meug_30,
Myotis lucifugus ENSMLUG00000007500 ortholog_one2one 2 retrogenes
retro_mluc_1710, retro_mluc_2252,
Mustela putorius furo ENSMPUG00000003268 ortholog_one2one 1 retrogene
retro_mputfur_354,
Mus musculus ENSMUSG00000021771 ortholog_one2one 1 retrogene
retro_mmus_2667,
Otolemur garnettii ENSOGAG00000030039 ortholog_one2one 1 retrogene
retro_ogar_2116,
Rattus norvegicus ENSRNOG00000013505 ortholog_one2many 1 retrogene
retro_rnor_2652,
Sarcophilus harrisii ENSSHAG00000012048 ortholog_one2one 1 retrogene
retro_shar_325,
Tupaia belangeri ENSTBEG00000001946 possible_ortholog 4 retrogenes
retro_tbel_1504, retro_tbel_1541, retro_tbel_1885, retro_tbel_4597,
Tarsius syrichta ENSTSYG00000004764 possible_ortholog 1 retrogene
retro_tsyr_14,
Vicugna pacos ENSVPAG00000008068 possible_ortholog 1 retrogene
retro_vpac_156,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2385 53.56 98.64
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Download FASTA sequences of all ENSCJAG00000001145 retrocopies