RetrogeneDB ID: | retro_tbel_1060 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_3732:11141..11662(+) | ||
Located in intron of: | ENSTBEG00000000467 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SAR1A | ||
Ensembl ID: | ENSTBEG00000008657 | ||
Aliases: | None | ||
Description: | SAR1 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:10534] |
Percent Identity: | 77.27 % |
Parental protein coverage: | 88.38 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | KSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAI |
K.G.LVFLGLDN.GK.TLLHMLKDD.LGQHV.TLHPTSEELTIA.MTFTTFDLG.H.QA.R.WKNYLPA. | |
Retrocopy | KTGTLVFLGLDNVGKPTLLHMLKDDMLGQHVTTLHPTSEELTIADMTFTTFDLGRHVQACRLWKNYLPAT |
Parental | NGIVFLVDCADHSRLMESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNV |
NGIVFL.D.AD...L.ESK.EL..LMTDETI.N.PI.ILGNKIDR...ISEE.L.E.FGLYGQTT.KG.V | |
Retrocopy | NGIVFLMDYADPEKLLESK-ELDSLMTDETIANMPIQILGNKIDRPETISEEWLQEMFGLYGQTTAKGSV |
Parental | TLKELNARPMEVFMCSVLKRQ-GYGEGFRWLSQYID |
.LKELNA.P.EVFMCSVLKRQ.GYGE.FRW...YID | |
Retrocopy | SLKELNA*PLEVFMCSVLKRQ<GYGEVFRWMA*YID |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000016353 | 5 retrocopies | |
Homo sapiens | ENSG00000079332 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000024879 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000001638 | 5 retrocopies | |
Myotis lucifugus | ENSMLUG00000006626 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000011243 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000005040 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000002374 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000002584 | 4 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000012780 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000008657 | 5 retrocopies | |
Tarsius syrichta | ENSTSYG00000005955 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000002631 | 2 retrocopies |