Parental gene: | SAR1A, ENSCJAG00000016353 |
| Aliases: | None |
| Description: | SAR1 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:10534] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 12:53941561..53966415(+) |
>ENSCJAG00000016353
ATGTCTTTCATCTTTGAGTGGATCTACAATGGCTTCAGCAGTGTGCTCCAGTTCCTAGGACTCTACAAGAAATCTGGAAA
ACTTGTATTCTTGGGTTTGGACAATGCAGGCAAAACCACTCTTCTTCACATGCTCAAAGATGACAGATTGGGCCAACATG
TTCCAACACTACATCCGACATCAGAAGAGCTAACAATTGCTGGAATGACCTTTACAACTTTTGATCTTGGTGGGCACGAG
CAAGCACGTCGGGTTTGGAAAAACTATCTCCCAGCAATTAATGGGATTGTCTTTCTGGTGGACTGTGCAGATCATTCTCG
CCTCGTGGAATCCAAAGTTGAGCTTAATGCTTTAATGACTGATGAAACAATATCCAATGTGCCAATCCTTATCTTGGGTA
ACAAAATTGACAGAACAGATGCAATCAGTGAAGAAAAACTTCGTGAGATATTTGGACTTTATGGACAGACCACAGGAAAG
GGGAATGTGACCCTGAAGGAGCTGAATGCTCGCCCCATGGAAGTGTTCATGTGCAGTGTGCTCAAGAGGCAAGGCTATGG
CGAGGGTTTCCGCTGGCTCTCCCAGTATATTGACTGA
ATGTCTTTCATCTTTGAGTGGATCTACAATGGCTTCAGCAGTGTGCTCCAGTTCCTAGGACTCTACAAGAAATCTGGAAA
ACTTGTATTCTTGGGTTTGGACAATGCAGGCAAAACCACTCTTCTTCACATGCTCAAAGATGACAGATTGGGCCAACATG
TTCCAACACTACATCCGACATCAGAAGAGCTAACAATTGCTGGAATGACCTTTACAACTTTTGATCTTGGTGGGCACGAG
CAAGCACGTCGGGTTTGGAAAAACTATCTCCCAGCAATTAATGGGATTGTCTTTCTGGTGGACTGTGCAGATCATTCTCG
CCTCGTGGAATCCAAAGTTGAGCTTAATGCTTTAATGACTGATGAAACAATATCCAATGTGCCAATCCTTATCTTGGGTA
ACAAAATTGACAGAACAGATGCAATCAGTGAAGAAAAACTTCGTGAGATATTTGGACTTTATGGACAGACCACAGGAAAG
GGGAATGTGACCCTGAAGGAGCTGAATGCTCGCCCCATGGAAGTGTTCATGTGCAGTGTGCTCAAGAGGCAAGGCTATGG
CGAGGGTTTCCGCTGGCTCTCCCAGTATATTGACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 58 .07 RPM |
| SRP051959_skeletal_muscle | 30 .57 RPM |
| SRP051959_lymph_node | 43 .93 RPM |
| SRP051959_lung | 58 .29 RPM |
| SRP051959_liver | 65 .31 RPM |
| SRP051959_kidney | 69 .71 RPM |
| SRP051959_heart | 50 .20 RPM |
| SRP051959_colon | 50 .74 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Homo sapiens | ENSG00000079332 | ortholog_one2one | 4 retrogenes | |
| Gorilla gorilla | ENSGGOG00000024879 | ortholog_one2one | 3 retrogenes | |
| Myotis lucifugus | ENSMLUG00000006626 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000011243 | ortholog_one2one | 4 retrogenes | |
| Otolemur garnettii | ENSOGAG00000005040 | ortholog_one2one | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000002374 | ortholog_one2one | 4 retrogenes | |
| Pan troglodytes | ENSPTRG00000002584 | ortholog_one2one | 4 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000012780 | ortholog_one2one | 2 retrogenes | |
| Tupaia belangeri | ENSTBEG00000008657 | ortholog_one2one | 5 retrogenes | |
| Tarsius syrichta | ENSTSYG00000005955 | ortholog_one2one | 2 retrogenes | |
| Vicugna pacos | ENSVPAG00000002631 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_957 | 94.44 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_1006 | 60.98 | 61.62 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_2242 | 78.61 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_2305 | 77.89 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_4081 | 73.85 | 64.65 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000016353 retrocopies