RetrogeneDB ID: | retro_itri_1191 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393396.1:5667461..5668045(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SAR1A | ||
Ensembl ID: | ENSSTOG00000012780 | ||
Aliases: | None | ||
Description: | SAR1 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:10534] |
Percent Identity: | 76.38 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MSFIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT |
M.FIFEWIYN.FSS..QFLGLYK.SG.L.FLGLD.AGKTTL.H.LK.DRL..HVPTLH.TSEELTIA.MT | |
Retrocopy | MYFIFEWIYNSFSSRVQFLGLYKTSG*LEFLGLDHAGKTTLFHLLKNDRLD*HVPTLHLTSEELTIARMT |
Parental | FTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLMESKVELNALMTDETISNVPIL-ILGNKIDRT |
FTTFDLGGHEQ...VWKNY.PAI.GIVF.VDCA.HS.LMESKVELN.LMTDE.I.NVPIL.ILGNKI.RT | |
Retrocopy | FTTFDLGGHEQ---VWKNYFPAIKGIVFPVDCANHSCLMESKVELNTLMTDEIITNVPIL<ILGNKIGRT |
Parental | DAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYID |
.AISEEK...IF....QTTGKG...LK.LN...MEVFMCSVLKRQG...GFR.LSQYID | |
Retrocopy | VAISEEKFHNIFVFCRQTTGKGKMSLKGLNPCLMEVFMCSVLKRQGSDKGFRYLSQYID |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000016353 | 5 retrocopies | |
Homo sapiens | ENSG00000079332 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000024879 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000006626 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000011243 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000005040 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000002374 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000002584 | 4 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000011326 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000012780 | 2 retrocopies |
retro_itri_1191 , retro_itri_590,
|
Tupaia belangeri | ENSTBEG00000008657 | 5 retrocopies | |
Tarsius syrichta | ENSTSYG00000005955 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000002631 | 2 retrocopies |