RetrogeneDB ID: | retro_tsyr_1455 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_447476:263..1055(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTSYG00000011189 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | OXCT1 | ||
Ensembl ID: | ENSTSYG00000013641 | ||
Aliases: | None | ||
Description: | 3-oxoacid CoA transferase 1 [Source:HGNC Symbol;Acc:8527] |
Percent Identity: | 68.28 % |
Parental protein coverage: | 51.66 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | KGLTAISNNAGVDNFGLGLLLRSKQIKRMVSSYVGENAEFERQY-LAGELEVELTPQGTLAERIRAGGAG |
K......N..GVDNF.L.....SKQIK.MVS.YVGEN..FE.Q..L.GELE.ELTPQ.TLAERI.AG.AG | |
Retrocopy | KDWSKMTNSGGVDNFDLDFMR*SKQIKCMVSLYVGENTKFE*QL<LSGELEAELTPQDTLAERIHAGRAG |
Parental | VPAFYTSTGYGTLVQEGGAPIKYNKDGSIAIASKPREVREFNGQHFILEEAITGDFALVKAWKADRAGNV |
V.AFYT.TG.GTLVQE.G...KYNKDGSI..ASKPREVREF.G.HFILE.AITG.FALVKAWKA...GN. | |
Retrocopy | VSAFYTTTGDGTLVQEEGSSTKYNKDGSIVTASKPREVREFSG*HFILEKAITGHFALVKAWKANPEGNM |
Parental | TFRKSARNFNLPMCKAAETTVVEVEEIVDIGSFAP-EDIHIPQIYVHRLIKGEKYEKRIERLSIRKEGDG |
.FRKSARNFNL.M...AET..VEVEEIV.IG.FAP..D.HIP.IYVH.LIKGEKYEKR.E.L.I.KE.DG | |
Retrocopy | IFRKSARNFNLLMHAIAETIGVEVEEIVAIGLFAP<KDVHIPKIYVHHLIKGEKYEKRSEHLTIQKERDG |
Parental | KAKSTK-PGDNVRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNMTVHLQSENGV |
...S....GDN.R..IIK.AA.E.EDG.YANLGIGI..LASN.ISPNM.V.....NGV | |
Retrocopy | NVRSGN<HGDNARKCIIKQAAPELEDGTYANLGIGINPLASNLISPNMSVRV*NGNGV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000033186 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000016318 | 1 retrocopy | |
Equus caballus | ENSECAG00000018312 | 1 retrocopy | |
Homo sapiens | ENSG00000083720 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000025087 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000009431 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000016656 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000009231 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000009909 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000015428 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000016829 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000043094 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000008271 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013641 | 1 retrocopy |
retro_tsyr_1455 ,
|
Tursiops truncatus | ENSTTRG00000004331 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000002550 | 1 retrocopy |