RetrogeneDB ID: retro_mluc_194

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430472:105310..106870(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000025683
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000009431
• Aliases: None
• Description: Succinyl-CoA:3-ketoacid-coenzyme A transferase [Source:UniProtKB/TrEMBL;Acc:G1PDQ0]

Sequence

>retro_mluc_194
ATGGCACCTCTCCGACTCCTCTGCTCCTGGCCATGTCTCTGCGCCTCGCTGTGCGGCTCCTGGGGCACCCGATCCAAGGG
AGGTGTTTGCTATTTTTCAACCAGCACATGTCGCCATACCAAATTTCACAAAGATCCAGTGGAAGCTGTAAAAGATATCC
CTGACGGTGCAAAGATCCTGGTTGGTAGCTTCGGGCTGTGTGGCATTCCAGAGAATCTCATCGGAGCTTTACTGAAGACC
AGAGTCAAGGGGCTCACTGCAGTCAGCAACAATGCAGGGGTTGACAACTTTGGCTTGGGCCGTTTGCTTCGAAGCAAGCA
GATAAAGCACATGATCTCTTCGTACGTGGGAGAAAATGCAGAATTTGAGCGACAGTACTTATCTGGTGAATTAGAGGTAG
AGCCAACACCTCAGGGCACACTGGCAGAGAGGATTCGTGCTGGCGGCGCTGGAGTTCCTGCCTTTTACACCAGCACAGGC
TATGGGATGCTGGTGCAAGAAGGAGGGGCACCGATCAAGTACAAGGATTTCGGCATCGCCATTGCCAGTAAGCCACGAGA
GGTGAGGGAGTTCAATGGTCAACATTTTATTTTGGAGGAAGCGATTACAGGGGATTTTTCCTTGGTGAAAGCCTGGAAGG
CAGACAGTGCAGGAAACATCATTTTCAGGAAAAGTGCACGGAATTTCAACCTGCCCATGTGCAAAGCTGCGGGAACTACA
GTGGTGGAGGTTGGAGAAATAGTGGATGTTGGATCCTTTGCCCCAGAAGACATCCATATTCCTAAGCTTTATGTACATTG
CCTTATAAAGGGAGAAAAATATGAGAAAAGAATTGAGCGTTTATCAACCTGGAAACAGGAAGATGTAAAAGCCAAATCCG
GAAAACCTGGAGATAATGTGAGGGAGAGCATCATCAAGCAGGCAGCTCTTGAATTTGAGGATGGCATGTATGCTAATTTG
GGCATAGGAATCCCACTTCTGGCCAGCAACTTTATCAGCCCAAATATGACTATCCATCTGCAGAGTGAAAATGGAATCCT
GGGTTTGGGTCCATATCCATTTGAAAATGAAGTTGATGCAGATCTAATCAATGCAGGCAAGGAAACAGTTACTGTTCTTC
CAGGAGCCTCTTACTTCTCCAGCGATGAGTCATTCGCGATGATTAGAGGAGGACATGTCAACCTGACCATGCTAGGAGCC
ATGCAGGTTTCCAAATATGGTGACCTGGCTAACTGGATGATCCCTGGGAAGATGGTGAAAGGAATGGGAGGTGCTATGGA
TCTGGTGTCCAGTGCCAAAACCAAGGTGGTGGTCACCATGGAGCATTCTGCAAAGGGAAATACACATAAAATCATGGAGA
AATGTACATTGCCGTTAACTGGAAAGCAGTGTGTCAACCGCATCATCACTGAAAAGGCTGTGTTTGACGTGGACAGCAAG
AAGGGGCTGACTCTGATTGAACTCTGGGAAGGCCTGACAGTGGACGACATCAAAAAGAGCACCGGGTATGACTTCGCAGT
TTCACCAAAACTCATGCCAATGCAGCAGATCACAATTTGA

Alignment

ORF - retro_mluc_194 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.88 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAPLRLLCSWPRLCASARGSWGPRSKGGVCYFSTSTCRHTKFYKDPVEAVKDIPDGAKILVGGFGLCGIP
          MAPLRLLCSWP.LCAS..GSWG.RSKGGVCYFSTSTCRHTKF.KDPVEAVKDIPDGAKILVG.FGLCGIP
Retrocopy MAPLRLLCSWPCLCASLCGSWGTRSKGGVCYFSTSTCRHTKFHKDPVEAVKDIPDGAKILVGSFGLCGIP

Parental  ENLIGALLKTGVKGLTAVSNNAGVDNFGLGLLLRSKQIKRMISSYVGENAEFERQYLSGELEVELTPQGT
          ENLIGALLKT.VKGLTAVSNNAGVDNFGLG.LLRSKQIK.MISSYVGENAEFERQYLSGELEVE.TPQGT
Retrocopy ENLIGALLKTRVKGLTAVSNNAGVDNFGLGRLLRSKQIKHMISSYVGENAEFERQYLSGELEVEPTPQGT

Parental  LAERIRAG-AGVPAFYTSTGYGTAVQEGGGPDQDHADQPMAMVAKVQQVREFNGQHFILEEAITGDFALV
          LAERIRAG.AGVPAFYTSTGYG..VQEGG.P.....D...A...K...VREFNGQHFILEEAITGDF.LV
Retrocopy LAERIRAGGAGVPAFYTSTGYGMLVQEGGAPIK-YKDFGIAIASKPREVREFNGQHFILEEAITGDFSLV

Parental  KAWKADRAGNIIFRKSARNFNLPMCKAAGTTVVEVEEIVDVGSFAPEDIHIPKIYVHRLIKGEKYEKRIE
          KAWKAD.AGNIIFRKSARNFNLPMCKAAGTTVVEV.EIVDVGSFAPEDIHIPK.YVH.LIKGEKYEKRIE
Retrocopy KAWKADSAGNIIFRKSARNFNLPMCKAAGTTVVEVGEIVDVGSFAPEDIHIPKLYVHCLIKGEKYEKRIE

Parental  RLSTRKQEDVKAKSGKPGDNVRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNMTIHLQSENGILGL
          RLST.KQEDVKAKSGKPGDNVRE.IIK.AALEFEDGMYANLGIGIPLLASNFISPNMTIHLQSENGILGL
Retrocopy RLSTWKQEDVKAKSGKPGDNVRESIIKQAALEFEDGMYANLGIGIPLLASNFISPNMTIHLQSENGILGL

Parental  GPYPFENEVDADLINAGKETVTVLPGASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLANWMIPGKMV
          GPYPFENEVDADLINAGKETVTVLPGASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLANWMIPGKMV
Retrocopy GPYPFENEVDADLINAGKETVTVLPGASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLANWMIPGKMV

Parental  KGMGGAMDLVSSAKTKVVVTMEHSAKGNTHKIMEKCTLPLTGKQCVNRIITEKAVFDVDSKKGLTLIELW
          KGMGGAMDLVSSAKTKVVVTMEHSAKGNTHKIMEKCTLPLTGKQCVNRIITEKAVFDVDSKKGLTLIELW
Retrocopy KGMGGAMDLVSSAKTKVVVTMEHSAKGNTHKIMEKCTLPLTGKQCVNRIITEKAVFDVDSKKGLTLIELW

Parental  EGLTVDDIKKSTGCDFAVSPKLMPMQQITI
          EGLTVDDIKKSTG.DFAVSPKLMPMQQITI
Retrocopy EGLTVDDIKKSTGYDFAVSPKLMPMQQITI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_194 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 16 parental genes, and 20 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000033186	2 retrocopies	retro_btau_1243, retro_btau_1302,
Dipodomys ordii	ENSDORG00000016318	1 retrocopy	retro_dord_282,
Equus caballus	ENSECAG00000018312	1 retrocopy	retro_ecab_511,
Homo sapiens	ENSG00000083720	1 retrocopy	retro_hsap_14,
Gorilla gorilla	ENSGGOG00000025087	1 retrocopy	retro_ggor_378,
Myotis lucifugus	ENSMLUG00000009431	1 retrocopy	retro_mluc_194 ,
Nomascus leucogenys	ENSNLEG00000016656	1 retrocopy	retro_nleu_2438,
Oryctolagus cuniculus	ENSOCUG00000009231	1 retrocopy	retro_ocun_672,
Otolemur garnettii	ENSOGAG00000009909	2 retrocopies	retro_ogar_2773, retro_ogar_2781,
Pongo abelii	ENSPPYG00000015428	2 retrocopies	retro_pabe_336, retro_pabe_478,
Pan troglodytes	ENSPTRG00000016829	1 retrocopy	retro_ptro_140,
Rattus norvegicus	ENSRNOG00000043094	2 retrocopies	retro_rnor_2177, retro_rnor_2256,
Ictidomys tridecemlineatus	ENSSTOG00000008271	1 retrocopy	retro_itri_747,
Tarsius syrichta	ENSTSYG00000013641	1 retrocopy	retro_tsyr_1455,
Tursiops truncatus	ENSTTRG00000004331	1 retrocopy	retro_ttru_875,
Vicugna pacos	ENSVPAG00000002550	1 retrocopy	retro_vpac_556,