Parental gene:

DKFZP459B1627, ENSPPYG00000015428

Aliases:None
Description:succinyl-CoA:3-ketoacid-coenzyme A transferase 1, mitochondrial [Source:RefSeq peptide;Acc:NP_001126667]
Organism:Orangutan (Pongo abelii)
Coordinates:5:42802713..42943554(-)


>ENSPPYG00000015428
ATGGCGGCTCTCAAACTCCTCTCCTCCGGGCTTCGGCTCTGCGCCTCTGCCCGCGGATCTGGGGGAACCTGGTACAAGGG
ATGTGTTTGTTCCTTTTCCACCAGTGCTCATCGCCATACCAAGTTTTATACAGATCCAGTAGAAGCTGTAAAAGACATCC
CTGATGGTGCCACGGTTTTGGTTGGTGGTTTTGGGCTATGTGGAATTCCAGAGAATCTTATAGATGCTTTACTGAAAACT
GGAGTAAAAGGACTAACTGCAGTCAGCAACAATGCAGGGGTTGACAATTTTGGTTTGGGGCTTTTGCTTCGGTCCAAGCA
GATAAAACGCATGGTCTCTTCATATGTGGGAGAAAATGCAGAATTTGAACGACAGTACTTATCTGGTGAATTAGAAGTGG
AGCTGACACCACAGGGCACACTTGCAGAGAGGATCCGTGCAGGCGGGGCTGGAGTTCCTGCATTTTACACCCCCACAGGG
TATGGGACCCTGGTACAAGAAGGAGGATCGCCCATCAAATACAACAAAGATGGCAGTGTTGCCATTGCCAGTAAGCCAAG
AGAGGTGAGGGAGTTCAATGGTCAGCACTTTATTTTGGAGGAAGCAATTACAGGGGATTTTGCTTTGGTGAAAGCCTGGA
AGGCGGACCGAGCAGGAAACGTGATTTTCAGGAAAAGTGCAAGGAATTTCAACTTGCCAATGTGCAAAGCTGCAGAAACC
ACAGTGGTAGAGGTTGAAGAAATTGTAGATATTGGAGCATTTGCTCCAGAAGACATCCATATTCCTCAGATTTATGTACA
TCGCCTTATAAAGGGAGAAAAATATGAGAAAAGAATTGAGCGTTTATCAATCCGGAAAGAAGGAGATGGGGAAGCCAAAT
CTGCTAAACCTGGAGATGACGTAAGGGAACGAATCATCAAGAGGGCCGCTCTTGAGTTTGAGGATGGCATGTATGCTAAT
TTGGGCATAGGAATCCCTCTCCTGGCCAGCAACTTTATCAGCCCAAATATAACTGTTCATCTTCAAAGTGAAAATGGAGT
CCTGGGTTTGGGTCCATATCCACGACAACATGAAGCTGATGCAGATCTCATCAATGCAGGCAAGGAAACAGTTACTATTC
TTCCAGGAGCCTCTTTTTTCTCCAGCGATGAATCATTTGCAATGATTAGAGGGGGACATGTTGATCTGACAATGCTAGGA
GCGATGCAGGTTTCCAAATATGGTGACCTGGCTAACTGGATGATACCTGGGAAGATGGTGAAAGGAATGGGAGGTGCTAT
GGATTTAGTGTCCAGTGCCAAAACCAAGGTGGTGGTCACCATGGAGCATTCTGCAAAGGGAAATGCACATAAAATCATGG
AGAAATGTACATTACCATTGACTGGAAAGCAATGTGTCAACCGCATTATTACTGAAAAGGCTGTGTTTGATGTGGACAAG
AAGAAAGGGTTGACTCTGGTTGAGCTCTGGGAAGGCCTGACAGTGGGTGACATACAGAAGAGTACTGGGTGTGATTTTGC
CGTTTCACCAAAACTCATGCCAATGCAGCAGATCGCAAATTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 151 .16 RPM
SRP007412_cerebellum 117 .59 RPM
SRP007412_heart 229 .15 RPM
SRP007412_kidney 186 .05 RPM
SRP007412_liver 4 .71 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000033186 ortholog_one2one 2 retrogenes
retro_btau_1243, retro_btau_1302,
Dipodomys ordii ENSDORG00000016318 ortholog_one2one 1 retrogene
retro_dord_282,
Equus caballus ENSECAG00000018312 ortholog_one2one 1 retrogene
retro_ecab_511,
Homo sapiens ENSG00000083720 ortholog_one2one 1 retrogene
retro_hsap_14,
Gorilla gorilla ENSGGOG00000025087 ortholog_one2one 1 retrogene
retro_ggor_378,
Myotis lucifugus ENSMLUG00000009431 ortholog_one2many 1 retrogene
retro_mluc_194,
Nomascus leucogenys ENSNLEG00000016656 ortholog_one2one 1 retrogene
retro_nleu_2438,
Oryctolagus cuniculus ENSOCUG00000009231 ortholog_one2one 1 retrogene
retro_ocun_672,
Otolemur garnettii ENSOGAG00000009909 ortholog_one2one 2 retrogenes
retro_ogar_2773, retro_ogar_2781,
Pan troglodytes ENSPTRG00000016829 ortholog_one2one 1 retrogene
retro_ptro_140,
Rattus norvegicus ENSRNOG00000043094 ortholog_one2one 2 retrogenes
retro_rnor_2177, retro_rnor_2256,
Ictidomys tridecemlineatus ENSSTOG00000008271 ortholog_one2one 1 retrogene
retro_itri_747,
Tarsius syrichta ENSTSYG00000013641 ortholog_one2one 1 retrogene
retro_tsyr_1455,
Tursiops truncatus ENSTTRG00000004331 ortholog_one2one 1 retrogene
retro_ttru_875,
Vicugna pacos ENSVPAG00000002550 ortholog_one2one 1 retrogene
retro_vpac_556,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_336 74.57 99.81
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2. retro_pabe_478 69.26 56.35
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Download FASTA sequences of all ENSPPYG00000015428 retrocopies