Parental gene:

OXCT1, ENSGGOG00000025087

Aliases:None
Description:Succinyl-CoA:3-ketoacid-coenzyme A transferase [Source:UniProtKB/TrEMBL;Acc:G3S0S5]
Organism:Gorilla (Gorilla gorilla)
Coordinates:17:51781264..51929255(+)


>ENSGGOG00000025087
ATGGCGGCTCTCAAACTCCTCTCCTCCGGGCTTCGGCTCTGCGCCTCTGCCCGCGGATCTGGGGGAACCTGGTACAAGGG
ATGGGTTTGTTCCTTTTCCACCAGTGCTCATCGCCATACCAAGTTTTATACAGATCCAGTAGAAGCTGTAAAAGACATCC
CTGATGGTGCCACGGTTTTGGTTGGTGGTTTTGGGCTATGTGGAATTCCAGAGAATCTTATAGATGCTTTACTGAAAACT
GGAGTAAAAGGACTAACTGCAGTCAGCAACAATGCAGGGGTTGACAATTTTGGTTTGGGGCTTTTGCTTCGGTCCAAGCA
GATAAAACGCATGGTCTCTTCATATGTGGGAGAAAATGCAGAATTTGAACGACAGTACTTATCTGGTGAATTAGAAGTGG
AGCTGACACCACAGGGCACACTTGCAGAGAGGATCCGTGCAGGCGGGGCTGGAGTTCCTGCATTTTACACCCCAACAGGG
TATGGGACCCTGGTACAAGAAGGAGGATCACCCATCAAATACAACAAAGATGGCAGTGTTGCCATTGCCAGTAAGCCAAG
AGAGGTGAGGGAGTTCAATGGTCAGCACTTTATTTTGGAGGAAGCAATTACAGGGGATTTTGCTTTGGTGAAAGCCTGGA
AGGCGGACCGAGCAGGAAACGTGATTTTCAGGAAAAGTGCAAGGAATTTCAACTTGCCAATGTGCAAAGCTGCAGAAACC
ACAGTGGTAGAGGTTGAAGAAATTGTGGATATTGGAGCATTTGCTCCAGAAGACATCCATATTCCTCAGATTTATGTACA
TCGCCTTATAAAGGGAGAAAAATATGAGAAAAGAATTGAGCGTTTATCAATCCGGAAAGAGGGAGATGGGGAAGCCAAAT
CTGCTAAACCTGGAGATGACGTAAGGGAACGAATCATCAAGAGGGCCGCTCTTGAGTTCGAGGATGGCATGTATGCTAAT
TTGGGCATAGGAATCCCTCTCCTGGCCAGCAATTTTATCAGCCCAAATATAACTGTTCATCTTCAAAGTGAAAATGGAGT
TCTGGGTTTGGGTCCATATCCACGACAACATGAAGCTGATGCAGATCTCATCAATGCAGGCAAGGAAACAGTTACTATTC
TTCCAGGAGCCTCTTTTTTCTCCAGCGATGAATCATTTGCAATGATTAGAGGTGGACATGTCGATCTGACAATGCTAGGA
GCGATGCAGGTTTCCAAATATGGTGACCTGGCTAACTGGATGATACCTGGGAAGATGGTGAAAGGAATGGGAGGTGCTAT
GGATTTAGTGTCCAGTGCCAAAACCAAAGTGGTGGTCACCATGGAGCATTCTGCAAAGGGAAATGCACATAAAATCATGG
AGAAATGTACATTACCATTGACTGGAAAGCAATGTGTCAACCGCATTATTACTGAAAAGGCTGTGTTTGATGTGGACAAG
AAGAAAGGGTTGACTCTGATTGAGCTCTGGGAAGGCCTGACAGTGGATGACGTACAGAAGAGTACTGGGTGTGATTTTGC
AGTTTCACCAAAACTCATGCCAATGCAGCAGATCGCAAATTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 154 .03 RPM
SRP007412_cerebellum 84 .51 RPM
SRP007412_heart 121 .30 RPM
SRP007412_kidney 161 .31 RPM
SRP007412_liver 5 .06 RPM
SRP007412_testis 53 .56 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000033186 ortholog_one2one 2 retrogenes
retro_btau_1243, retro_btau_1302,
Dipodomys ordii ENSDORG00000016318 ortholog_one2one 1 retrogene
retro_dord_282,
Equus caballus ENSECAG00000018312 ortholog_one2one 1 retrogene
retro_ecab_511,
Homo sapiens ENSG00000083720 ortholog_one2one 1 retrogene
retro_hsap_14,
Myotis lucifugus ENSMLUG00000009431 ortholog_one2many 1 retrogene
retro_mluc_194,
Nomascus leucogenys ENSNLEG00000016656 ortholog_one2one 1 retrogene
retro_nleu_2438,
Oryctolagus cuniculus ENSOCUG00000009231 ortholog_one2one 1 retrogene
retro_ocun_672,
Otolemur garnettii ENSOGAG00000009909 ortholog_one2one 2 retrogenes
retro_ogar_2773, retro_ogar_2781,
Pongo abelii ENSPPYG00000015428 ortholog_one2one 2 retrogenes
retro_pabe_336, retro_pabe_478,
Pan troglodytes ENSPTRG00000016829 ortholog_one2one 1 retrogene
retro_ptro_140,
Rattus norvegicus ENSRNOG00000043094 ortholog_one2one 2 retrogenes
retro_rnor_2177, retro_rnor_2256,
Ictidomys tridecemlineatus ENSSTOG00000008271 ortholog_one2one 1 retrogene
retro_itri_747,
Tarsius syrichta ENSTSYG00000013641 ortholog_one2one 1 retrogene
retro_tsyr_1455,
Tursiops truncatus ENSTTRG00000004331 ortholog_one2one 1 retrogene
retro_ttru_875,
Vicugna pacos ENSVPAG00000002550 ortholog_one2one 1 retrogene
retro_vpac_556,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ggor_378 66.89 56.35
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Download FASTA sequences of all ENSGGOG00000025087 retrocopies