RetrogeneDB ID:

retro_tsyr_1527

Retrocopy
location
Organism:Tarsier (Tarsius syrichta)
Coordinates:scaffold_47932:7868..8307(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:UBE2R2
Ensembl ID:ENSTSYG00000013265
Aliases:None
Description:ubiquitin-conjugating enzyme E2R 2 [Source:HGNC Symbol;Acc:19907]


Retrocopy-Parental alignment summary:






>retro_tsyr_1527
GCGCACATTAAATTTCCTATTGACTACCCCTATTCACCACCTACCTTCAGATTCTTGACCAAAATGTGGCACCTCAACAT
TTATGAGAATGGAGATGTATGCATTTCGATTCTTCATCCGCCTGTAGATGACCCACAGTGTGGAGAGCTGCCTCTGAAAA
GTGGAATCCTACTCAGAATGTGAGGACTATCCGGTTAAGTGTAATCTCACTGCTTAATGAGCCCAATGCCTTCTCCCCAG
CCAATGTGGATGCTTCAGTTATGTTCAGGAAATGGAGAGACAGTAAAGGAAAAGACAAAGAATTTGCTGAGATCATCAGG
AAACAGGTTTCGGCCACTAAGGCCGAAGCAGAAAAGGATGGAGTGAAGTTCCCCACGACCCTGGCGGAATACTGCATCAA
AACTAAGTACCTTCCAACGACAACAGCTCAGATTTGCTT

ORF - retro_tsyr_1527 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 94.63 %
Parental protein coverage: 82.12 %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELP-SERWNPTQNVRTILLSVI
AHIKFPIDYPYSPPTFRFLTKMWH.NIYENGDVCISILHPPVDDPQ.GELP.SE.WNPTQNVRTI.LSVI
RetrocopyAHIKFPIDYPYSPPTFRFLTKMWHLNIYENGDVCISILHPPVDDPQCGELP<SEKWNPTQNVRTIRLSVI
ParentalSLLNEPNAFSPANVDASVMFRKWRDSKGKDKECAEIIRKQVSATKAEAEKDGVKFPMTLAEYCIKTK-VP
SLLNEPNAFSPANVDASVMFRKWRDSKGKDKE.AEIIRKQVSATKAEAEKDGVKFP.TLAEYCIKTK.VP
RetrocopySLLNEPNAFSPANVDASVMFRKWRDSKGKDKEFAEIIRKQVSATKAEAEKDGVKFPTTLAEYCIKTK<VP
ParentalSNDNSSDLL
SNDNSSDLL
RetrocopySNDNSSDLL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_1527 was not experimentally validated.

Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 6 parental genes, and 14 retrocopies.

Species Parental gene accession Retrocopies number
Echinops telfairi ENSETEG000000115741 retrocopy
Myotis lucifugus ENSMLUG000000067931 retrocopy
Oryctolagus cuniculus ENSOCUG000000235883 retrocopies
Sorex araneus ENSSARG000000057341 retrocopy
Tarsius syrichta ENSTSYG00000013265 7 retrocopies
Tursiops truncatus ENSTTRG000000105871 retrocopy



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