RetrogeneDB ID: retro_ttru_724

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_318:54912..55436(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: UBE2R2
• Ensembl ID: ENSTTRG00000010587
• Aliases: None
• Description: ubiquitin-conjugating enzyme E2R 2 [Source:HGNC Symbol;Acc:19907]

Sequence

>retro_ttru_724
GAGGAAGCGGTGGAGGGCGCCGCATCACACTGGTGGATGAATCCGACCTCTACAACGGGGAGGTTGTCGTCTTCGGACCC
CCTAACACCCTCTACGAAGGCGGCTACTTCAAGGCTCATATTAAATTCCCTATTGATTACACGGATTCACCACCTACCTT
GAGATTCTTGACCCAAATGTGACTCCCCAACATTTAAGAGCGTGGAGACGTATGCATTTCCATTCTTCCTCCGCCTGTGG
ACGACCGGCAGAGTGGAGAACCGCCCTCTGAAAGGCGGAACCCTACTCAAAATCTCAGGACTATCTTGTTAAGTATAACC
TCATTGCTTAATGAGCCCAACACCTCCTCCCCAGTCGAGGTGGATGCTTCTGTTATGTTCAGGGAAGGGAGGGACAGTAC
AGGAAAAGACAAAGAATATGCCGAAATCATTAGGAAACAGGTGTCAGCCACTAAGGCCAAAGCAGAAAAGGATGGAGCGA
AGGTCCCCACGACCCTGGCAGAATACTGCATCACAACTAAAGTG

Alignment

ORF - retro_ttru_724 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.39 %
• Parental protein coverage: 79.19 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  QEPVEGF-RITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENG
          .E.VEG..RITLVDESDLYN.EV..FGPPNTLYEGGYFKAHIKFPIDY..SPPT.RFLT.M..PNI.E.G
Retrocopy EEAVEGA<RITLVDESDLYNGEVVVFGPPNTLYEGGYFKAHIKFPIDYTDSPPTLRFLTQM*LPNI*ERG

Parental  DVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMFRKWRDSKGKDKE
          DVCISIL.PPVDD.QSGE.PSER.NPTQN.RTILLS..SLLNEPNT.SP..VDASVMFR..RDS.GKDKE
Retrocopy DVCISILPPPVDDRQSGEPPSERRNPTQNLRTILLSITSLLNEPNTSSPVEVDASVMFREGRDSTGKDKE

Parental  YAEIIRKQVSATKAEAEKDGVKVPTTLAEYCIKTKV
          YAEIIRKQVSATKA.AEKDG.KVPTTLAEYCI.TKV
Retrocopy YAEIIRKQVSATKAKAEKDGAKVPTTLAEYCITTKV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_724 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_724 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 8 parental genes, and 17 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000011574	1 retrocopy	retro_etel_1226,
Myotis lucifugus	ENSMLUG00000006793	1 retrocopy	retro_mluc_2175,
Oryctolagus cuniculus	ENSOCUG00000023588	3 retrocopies	retro_ocun_131, retro_ocun_1719, retro_ocun_1793,
Sorex araneus	ENSSARG00000005734	1 retrocopy	retro_sara_528,
Tarsius syrichta	ENSTSYG00000013265	7 retrocopies	retro_tsyr_1118, retro_tsyr_1526, retro_tsyr_1527, retro_tsyr_1819, retro_tsyr_432, retro_tsyr_494, retro_tsyr_830,
Tursiops truncatus	ENSTTRG00000000391	2 retrocopies	retro_ttru_1142, retro_ttru_98,
Tursiops truncatus	ENSTTRG00000000595	1 retrocopy	retro_ttru_1578,
Tursiops truncatus	ENSTTRG00000010587	1 retrocopy	retro_ttru_724 ,