RetrogeneDB ID:

retro_ttru_1196

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_106932:133061..134447(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:EEF1A1
Ensembl ID:ENSTTRG00000000114
Aliases:None
Description:eukaryotic translation elongation factor 1 alpha 1 [Source:HGNC Symbol;Acc:3189]


Retrocopy-Parental alignment summary:






>retro_ttru_1196
ATGGGAAAGGAGAAGACGCACATCAACATCGTTGTCATTGGACACGTAGATTCGGGGAAGTCCACCACTACTGGCCATCT
GATCTACAAATGTGGTGGGATCGACAAGAGAACCATTGAAAAGTTCGAGAAGGAGGCTGCCGAGATGGGGAAGGGCTCCT
TTAAGTATGCCTGGGTCTTGGACAAACTGAAAGCTGAACGTGAGCGTGGTATCACCATTGATATATCCCTATGGAAATTC
GAGACCAGCAAGTACTATGTGACCATCATTGATGCCCCAGGACACAGAGACTTCATCAAAAACATGATTACAGGCACATC
CCAGGCTGACTGTGCTGTCCTGATTGTTGCTGCTGGTGTTGGTGAATTTGAAGCAGGTATTTCCAAGAATGGGCAGACCC
GTGAGCATGCCCTTCTGGCCTACACTCTGGGTGTGAAACAACTAATTGTTGGAGTTAACAAAATGGATTCCACCGAGCCA
CCATACAGCCAGAAGAGATACGAGGAAATTGTAAAGGAAGTCAGCACCTACATTAAGAAAATTGGCTACAACCCAGACAC
GGTAGCATTTGTGCCAATTTCTGGCTGGAATGGCGACAACATGCTGGAGCCAAGTGCTAACATGCCGTGGTTCAAGGGAT
GGAAAGTCACTCGTAAAGATGGCAATGCCAGTGGAACCACACTGCTTGAAGCTCTGGATTGCATCCTGCCACCAACTCGC
CCAACTGACAAACCCTTGCGTTTGCCCCTTCAGGACGTCTACAAAATTGGTGGTATTGGCACTGTCCCTGTGGGTCGAGT
GGAGACTGGTGTTCTCAAACCTGGCATGGTGGTCACCTTTGCTCCAGTCAATGTGACAACTGAAGTGAAGTCTGTTGAAA
TGCATCATGAAGCTTTGAGTGAAGCCCTTCCTGGGGACAATGTGGGCTTCAATGTCAAGAACGTGTCTGTCAAAGATGTT
CGTCGTGGCAATGTAGCTGGTGACAGCAAAAATGACCCACCGATGGAAGCAGCTGGCTTCACAGCTCAGGTGATTATCTT
GAACCATCCAGGCCAAATCAGTGCTGGCTATGCACCTGTGCTGGATTGTCACACGGCTCACATTGCCTGCAAGTTTGCTG
AGCTGAAGGAGAAGATTGATCGTCGTTCTGGGAAAAAGCTGGAAGATGGCCCCAAATTCTTGAAATCTGGTGATGCAGCC
ATCGTTGATATGGTTCCTGGCAAACCCATGTGTGTTGAGAGCTTCTCTGACTATCCTCCTCTGGGCCGCTTTGCTGTTCG
TGACATGAGACAGACGGTTGCTGTGGGTGTCATCAAAGCAGTGGACAAGAAGGCAGCTGGAGCTGGCAAGGTCACCAAGT
CTGCCCAGAAAGCTCAGAGGGCTAAA

ORF - retro_ttru_1196 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 100. %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERG
MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERG
RetrocopyMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERG
ParentalITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLA
ITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLA
RetrocopyITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLA
ParentalYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPW
YTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPW
RetrocopyYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPW
ParentalFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTF
FKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTF
RetrocopyFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTF
ParentalAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHP
APVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHP
RetrocopyAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHP
ParentalGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPP
GQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPP
RetrocopyGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPP
ParentalLGRFAVRDMRQTVAVGVIKAVDKKAAGAGKVTKSAQKAQRAK
LGRFAVRDMRQTVAVGVIKAVDKKAAGAGKVTKSAQKAQRAK
RetrocopyLGRFAVRDMRQTVAVGVIKAVDKKAAGAGKVTKSAQKAQRAK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1196 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1196 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 17 parental genes, and 127 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000145343 retrocopies
Canis familiaris ENSCAFG000000132491 retrocopy
Equus caballus ENSECAG000000203632 retrocopies
Equus caballus ENSECAG000000222601 retrocopy
Felis catus ENSFCAG0000003097714 retrocopies
Homo sapiens ENSG0000015650827 retrocopies
Loxodonta africana ENSLAFG000000280811 retrocopy
Myotis lucifugus ENSMLUG0000001353724 retrocopies
Monodelphis domestica ENSMODG000000185334 retrocopies
Mustela putorius furoENSMPUG000000038166 retrocopies
Mustela putorius furoENSMPUG0000000427110 retrocopies
Oryctolagus cuniculus ENSOCUG000000084813 retrocopies
Ochotona princeps ENSOPRG000000166856 retrocopies
Sus scrofa ENSSSCG000000044894 retrocopies
Tursiops truncatus ENSTTRG00000000114 19 retrocopies
Tursiops truncatus ENSTTRG000000018351 retrocopy
Drosophila melanogaster FBgn00005571 retrocopy



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