Parental gene:

EF1ALPHA, ENSSSCG00000004489

Aliases:EEF1A1, EF1A1
Description:Sus scrofa eukaryotic translation elongation factor 1 alpha 1 (EEF1A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001097418]
Organism:Pig (Sus scrofa)
Coordinates:1:103474790..103477893(+)


>ENSSSCG00000004489
ATGGGAAAGGAGAAGACTCACATCAACATCGTCGTCATCGGACACGTCGATTCGGGCAAGTCCACCACTACTGGCCATCT
GATCTACAAATGCGGTGGGATCGACAAAAGAACCATCGAAAAGTTCGAAAAAGAGGCTGCGGAGATGGGAAAGGGCTCCT
TCAAGTATGCCTGGGTCTTGGACAAACTAAAGGCTGAACGTGAGCGTGGTATTACCATTGACATCTCCCTGTGGAAATTC
GAGACCAGCAAGTACTACGTGACCATCATTGATGCTCCAGGACACAGAGACTTTATTAAGAACATGATTACAGGCACTTC
CCAGGCTGACTGTGCTGTCCTGATTGTTGCTGCTGGTGTTGGTGAATTCGAAGCAGGTATTTCCAAGAACGGGCAGACCC
GTGAGCATGCTCTTCTGGCCTACACCCTGGGTGTGAAACAGCTCATTGTTGGCGTTAACAAAATGGATTCCACTGAGCCA
CCCTACAGCCAGAAGAGATATGAAGAGATTGTAAAGGAAGTCAGCACCTACATTAAGAAAATTGGCTACAACCCTGATAC
AGTAGCATTTGTGCCAATTTCTGGCTGGAATGGTGACAACATGCTGGAGCCAAGTGCTAATATGCCTTGGTTCAAGGGAT
GGAAAGTCACCCGTAAAGATGGCAATGCCAGTGGAACCACACTGCTTGAAGCTCTGGATTGCATTCTACCACCAACTCGT
CCAACTGACAAGCCCTTGCGCCTGCCCCTCCAGGACGTCTACAAAATTGGTGGTATTGGTACAGTCCCTGTGGGCCGAGT
GGAGACCGGTGTTCTCAAACCTGGCATGGTGGTCACCTTTGCTCCAGTCAATGTTACAACTGAAGTCAAGTCTGTTGAAA
TGCACCATGAAGCTTTGAGTGAAGCCCTTCCTGGGGACAACGTGGGCTTTAATGTCAAAAACGTGTCTGTCAAAGACGTT
CGTCGTGGCAATGTGGCTGGTGACAGCAAAAATGACCCACCTATGGAAGCAGCTGGCTTTACAGCTCAGGTGATTATCCT
GAACCATCCTGGCCAGATCAGTGCTGGTTACGCACCTGTGCTGGATTGCCACACAGCTCACATTGCCTGCAAGTTTGCTG
AACTGAAGGAGAAGATTGATCGTCGTTCTGGGAAAAAGCTGGAAGATGGCCCCAAGTTCTTGAAATCTGGTGATGCTGCC
ATTGTCGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCTGACTATCCTCCTCTGGGCCGATTTGCTGTTCG
TGACATGAGACAGACAGTTGCTGTGGGTGTCATCAAAGCTGTGGACAAGAAGGCAGCTGGAGCTGGCAAGGTCACCAAGT
CTGCTCAGAAAGCTCAGAAGGCTAAATGA

Library Parental gene expression (RPM)
SRP014902_placenta 11400 .80 RPM
SRP014902_testis 9042 .38 RPM
SRP018288_heart 2428 .25 RPM
SRP018288_kidney 5194 .10 RPM
SRP018288_liver 3692 .15 RPM
SRP018288_lung 6639 .68 RPM
SRP018856_adipose 25927 .80 RPM
SRP035408_brain 3538 .43 RPM
SRP035408_liver 3777 .12 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000014534 ortholog_one2one 3 retrogenes
retro_btau_114, retro_btau_115, retro_btau_192,
Canis familiaris ENSCAFG00000013249 possible_ortholog 1 retrogene
retro_cfam_1007,
Equus caballus ENSECAG00000020363 ortholog_one2one 2 retrogenes
retro_ecab_66, retro_ecab_93,
Equus caballus ENSECAG00000022260 possible_ortholog 1 retrogene
retro_ecab_802,
Felis catus ENSFCAG00000030977 ortholog_one2one 14 retrogenes
retro_fcat_1021, retro_fcat_1388, retro_fcat_1569, retro_fcat_1683, retro_fcat_1825, retro_fcat_184, retro_fcat_1915, retro_fcat_220, retro_fcat_221, retro_fcat_334, retro_fcat_515, retro_fcat_566, retro_fcat_688, retro_fcat_737,
Homo sapiens ENSG00000156508 ortholog_one2one 27 retrogenes
retro_hsap_1093, retro_hsap_1181, retro_hsap_1567, retro_hsap_1671, retro_hsap_190, retro_hsap_2302, retro_hsap_2455, retro_hsap_2637, retro_hsap_2712, retro_hsap_278, retro_hsap_283, retro_hsap_2896, retro_hsap_2920, retro_hsap_2967, retro_hsap_2983, retro_hsap_3239, retro_hsap_3291, retro_hsap_3314, retro_hsap_363, retro_hsap_3701, retro_hsap_3706, retro_hsap_3758, retro_hsap_3825, retro_hsap_3917, retro_hsap_4220, retro_hsap_4730, retro_hsap_989,
Loxodonta africana ENSLAFG00000028081 possible_ortholog 1 retrogene
retro_lafr_651,
Myotis lucifugus ENSMLUG00000013537 ortholog_one2many 24 retrogenes
retro_mluc_110, retro_mluc_1252, retro_mluc_1392, retro_mluc_1430, retro_mluc_1558, retro_mluc_1628, retro_mluc_1644, retro_mluc_1853, retro_mluc_1901, retro_mluc_1910, retro_mluc_2071, retro_mluc_2148, retro_mluc_2154, retro_mluc_2277, retro_mluc_2355, retro_mluc_2358, retro_mluc_2359, retro_mluc_2391, retro_mluc_441, retro_mluc_470, retro_mluc_677, retro_mluc_950, retro_mluc_956, retro_mluc_966,
Monodelphis domestica ENSMODG00000018533 possible_ortholog 4 retrogenes
retro_mdom_1053, retro_mdom_1146, retro_mdom_311, retro_mdom_792,
Mustela putorius furo ENSMPUG00000003816 ortholog_one2many 6 retrogenes
retro_mputfur_1514, retro_mputfur_1643, retro_mputfur_220, retro_mputfur_502, retro_mputfur_844, retro_mputfur_862,
Mustela putorius furo ENSMPUG00000004271 ortholog_one2many 10 retrogenes
retro_mputfur_1179, retro_mputfur_1276, retro_mputfur_1351, retro_mputfur_1394, retro_mputfur_284, retro_mputfur_355, retro_mputfur_474, retro_mputfur_678, retro_mputfur_920, retro_mputfur_973,
Oryctolagus cuniculus ENSOCUG00000008481 ortholog_one2one 3 retrogenes
retro_ocun_1102, retro_ocun_187, retro_ocun_71,
Ochotona princeps ENSOPRG00000016685 ortholog_one2one 6 retrogenes
retro_opri_1049, retro_opri_1076, retro_opri_1197, retro_opri_298, retro_opri_325, retro_opri_383,
Tursiops truncatus ENSTTRG00000000114 ortholog_one2one 19 retrogenes
retro_ttru_1020, retro_ttru_1150, retro_ttru_1196, retro_ttru_1349, retro_ttru_1351, retro_ttru_1368, retro_ttru_1384, retro_ttru_1810, retro_ttru_1861, retro_ttru_1876, retro_ttru_384, retro_ttru_390, retro_ttru_401, retro_ttru_523, retro_ttru_664, retro_ttru_698, retro_ttru_844, retro_ttru_941, retro_ttru_998,
Drosophila melanogaster FBgn0000557 ortholog_many2many 1 retrogene
retro_dmel_9,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_169 72.25 99.78
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2. retro_sscr_492 80.00 68.40
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3. retro_sscr_612 70.54 78.79
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4. retro_sscr_758 76.06 76.19
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Download FASTA sequences of all ENSSSCG00000004489 retrocopies