Parental gene:

EEF1A1, ENSFCAG00000030977

Aliases:EEF1A1, EF1A
Description:Elongation factor 1-alpha 1 [Source:UniProtKB/Swiss-Prot;Acc:Q66RN5]
Organism:Cat (Felis catus)
Coordinates:B2:68912385..68915085(-)


>ENSFCAG00000030977
ATGGGAAAGGAGAAGACTCATATCAACATCGTCGTCATTGGACACGTAGATTCGGGCAAGTCTACCACTACTGGTCATCT
GATCTACAAATGTGGTGGGATCGACAAAAGAACTATCGAAAAATTTGAGAAGGAGGCTGCTGAGATGGGAAAGGGCTCCT
TCAAGTATGCCTGGGTCTTGGATAAACTGAAAGCAGAACGTGAACGTGGTATCACCATTGATATCTCCCTGTGGAAATTC
GAGACCAGCAAGTACTATGTGACCATCATTGATGCCCCAGGACACAGAGACTTTATCAAAAATATGATTACGGGCACATC
TCAGGCTGACTGTGCTGTCCTGATCGTTGCTGCTGGTGTTGGCGAATTTGAAGCAGGTATCTCCAAGAATGGGCAGACCC
GTGAGCATGCCCTTCTGGCTTACACACTGGGTGTAAAACAACTTATTGTCGGTGTTAACAAAATGGATTCCACTGAGCCA
CCCTACAGCCAGAAGAGATACGAGGAAATCGTTAAGGAAGTCAGCACCTACATTAAGAAAATTGGCTACAACCCCGACAC
CGTAGCATTTGTGCCAATTTCTGGTTGGAATGGTGACAACATGCTGGAGCCAAGTGCTAATATGCCTTGGTTCAAGGGAT
GGAAAGTCACCCGTAAAGATGGCAATGCCAGTGGAACCACACTGCTTGAAGCTCTGGATTGCATTCTGCCACCTACTCGT
CCAACTGACAAGCCCTTGCGTCTGCCCCTCCAGGATGTCTACAAAATTGGTGGTATTGGTACTGTCCCTGTGGGTCGAGT
GGAGACCGGTGTTCTTAAGCCAGGCATGGTGGTCACTTTTGCTCCAGTCAATGTTACAACTGAAGTAAAGTCCGTTGAAA
TGCACCATGAAGCTTTGAGTGAGGCTCTACCTGGGGACAACGTGGGCTTCAATGTCAAGAACGTATCTGTCAAAGATGTT
CGTCGTGGCAATGTGGCTGGTGATAGCAAAAATGACCCACCAATGGAAGCAGCTGGCTTCACAGCTCAGGTGATTATCCT
GAACCATCCAGGCCAAATCAGTGCCGGATATGCACCTGTGCTGGACTGTCACACAGCTCACATCGCCTGCAAGTTTGCTG
AGCTGAAGGAGAAGATTGACCGTCGTTCTGGAAAAAAGCTGGAAGATGGTCCCAAGTTCTTAAAATCTGGTGATGCTGCC
ATCGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCTGACTATCCTCCTCTGGGCCGTTTTGCTGTTCG
TGACATGAGACAGACGGTTGCTGTGGGTGTCATCAAAGCAGTGGACAAGAAGGCAGCTGGAGCTGGCAAGGTCACCAAGT
CTGCCCAGAAAGCTCAGAAGGCTAAATGA

Library Parental gene expression (RPM)
SRP017611_brain 1486 .30 RPM
SRP017611_kidney 9381 .03 RPM
SRP017611_liver 6481 .18 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000014534 ortholog_one2one 3 retrogenes
retro_btau_114, retro_btau_115, retro_btau_192,
Canis familiaris ENSCAFG00000013249 possible_ortholog 1 retrogene
retro_cfam_1007,
Dipodomys ordii ENSDORG00000009629 possible_ortholog 1 retrogene
retro_dord_509,
Equus caballus ENSECAG00000020363 ortholog_one2one 2 retrogenes
retro_ecab_66, retro_ecab_93,
Equus caballus ENSECAG00000022260 possible_ortholog 1 retrogene
retro_ecab_802,
Erinaceus europaeus ENSEEUG00000000342 possible_ortholog 3 retrogenes
retro_eeur_407, retro_eeur_492, retro_eeur_625,
Homo sapiens ENSG00000156508 ortholog_one2one 27 retrogenes
retro_hsap_1093, retro_hsap_1181, retro_hsap_1567, retro_hsap_1671, retro_hsap_190, retro_hsap_2302, retro_hsap_2455, retro_hsap_2637, retro_hsap_2712, retro_hsap_278, retro_hsap_283, retro_hsap_2896, retro_hsap_2920, retro_hsap_2967, retro_hsap_2983, retro_hsap_3239, retro_hsap_3291, retro_hsap_3314, retro_hsap_363, retro_hsap_3701, retro_hsap_3706, retro_hsap_3758, retro_hsap_3825, retro_hsap_3917, retro_hsap_4220, retro_hsap_4730, retro_hsap_989,
Loxodonta africana ENSLAFG00000028081 possible_ortholog 1 retrogene
retro_lafr_651,
Myotis lucifugus ENSMLUG00000013537 ortholog_one2many 24 retrogenes
retro_mluc_110, retro_mluc_1252, retro_mluc_1392, retro_mluc_1430, retro_mluc_1558, retro_mluc_1628, retro_mluc_1644, retro_mluc_1853, retro_mluc_1901, retro_mluc_1910, retro_mluc_2071, retro_mluc_2148, retro_mluc_2154, retro_mluc_2277, retro_mluc_2355, retro_mluc_2358, retro_mluc_2359, retro_mluc_2391, retro_mluc_441, retro_mluc_470, retro_mluc_677, retro_mluc_950, retro_mluc_956, retro_mluc_966,
Monodelphis domestica ENSMODG00000018533 possible_ortholog 4 retrogenes
retro_mdom_1053, retro_mdom_1146, retro_mdom_311, retro_mdom_792,
Mustela putorius furo ENSMPUG00000003816 ortholog_one2many 6 retrogenes
retro_mputfur_1514, retro_mputfur_1643, retro_mputfur_220, retro_mputfur_502, retro_mputfur_844, retro_mputfur_862,
Mustela putorius furo ENSMPUG00000004271 ortholog_one2many 10 retrogenes
retro_mputfur_1179, retro_mputfur_1276, retro_mputfur_1351, retro_mputfur_1394, retro_mputfur_284, retro_mputfur_355, retro_mputfur_474, retro_mputfur_678, retro_mputfur_920, retro_mputfur_973,
Mus musculus ENSMUSG00000037742 possible_ortholog 15 retrogenes
retro_mmus_1349, retro_mmus_1518, retro_mmus_1667, retro_mmus_1783, retro_mmus_1816, retro_mmus_1849, retro_mmus_1850, retro_mmus_1864, retro_mmus_1909, retro_mmus_2363, retro_mmus_2583, retro_mmus_2902, retro_mmus_3249, retro_mmus_480, retro_mmus_483,
Oryctolagus cuniculus ENSOCUG00000008481 ortholog_one2one 3 retrogenes
retro_ocun_1102, retro_ocun_187, retro_ocun_71,
Ochotona princeps ENSOPRG00000016685 ortholog_one2one 6 retrogenes
retro_opri_1049, retro_opri_1076, retro_opri_1197, retro_opri_298, retro_opri_325, retro_opri_383,
Sus scrofa ENSSSCG00000004489 ortholog_one2one 4 retrogenes
retro_sscr_169, retro_sscr_492, retro_sscr_612, retro_sscr_758,
Ictidomys tridecemlineatus ENSSTOG00000007687 possible_ortholog 4 retrogenes
retro_itri_1509, retro_itri_1740, retro_itri_1816, retro_itri_195,
Tursiops truncatus ENSTTRG00000000114 ortholog_one2one 19 retrogenes
retro_ttru_1020, retro_ttru_1150, retro_ttru_1196, retro_ttru_1349, retro_ttru_1351, retro_ttru_1368, retro_ttru_1384, retro_ttru_1810, retro_ttru_1861, retro_ttru_1876, retro_ttru_384, retro_ttru_390, retro_ttru_401, retro_ttru_523, retro_ttru_664, retro_ttru_698, retro_ttru_844, retro_ttru_941, retro_ttru_998,
Drosophila melanogaster FBgn0000557 ortholog_many2many 1 retrogene
retro_dmel_9,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_184 84.35 67.10
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2. retro_fcat_220 83.72 73.38
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3. retro_fcat_221 77.51 52.81
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4. retro_fcat_334 61.70 70.13
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5. retro_fcat_515 81.63 53.03
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6. retro_fcat_566 86.72 100.00
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7. retro_fcat_688 74.93 77.06
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8. retro_fcat_737 62.37 58.87
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9. retro_fcat_1021 83.77 64.94
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10. retro_fcat_1388 59.34 57.58
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11. retro_fcat_1569 67.15 72.94
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12. retro_fcat_1683 78.00 97.62
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13. retro_fcat_1825 75.98 53.68
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14. retro_fcat_1915 91.67 67.32
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Download FASTA sequences of all ENSFCAG00000030977 retrocopies