RetrogeneDB ID: | retro_fcat_1021 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:33942307..33943204(-) | ||
Located in intron of: | ENSFCAG00000011108 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EEF1A1 | ||
Ensembl ID: | ENSFCAG00000030977 | ||
Aliases: | EEF1A1, EF1A | ||
Description: | Elongation factor 1-alpha 1 [Source:UniProtKB/Swiss-Prot;Acc:Q66RN5] |
Percent Identity: | 83.77 % |
Parental protein coverage: | 64.94 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERG |
MGKEKTHINI..IGHV..GK.TTTGHLIY.C..IDKRT.EKF.KEAAEMGKGSF.YA.VLD.LKAE.E.G | |
Retrocopy | MGKEKTHINIIIIGHVGLGKATTTGHLIYICDRIDKRTLEKFKKEAAEMGKGSFMYA*VLDQLKAENEHG |
Parental | -ITIDISLWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHAL |
.ITIDISL.KFETSK..YVTIIDAPGH.DFIKNMI..TSQAD.AVLIVAAGVGEFEAGISKN.QT.EH.L | |
Retrocopy | >ITIDISL*KFETSK<VYVTIIDAPGHKDFIKNMIISTSQADSAVLIVAAGVGEFEAGISKNRQTCEHDL |
Parental | LAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANM |
.AYTLGVK.LIVGVNKM.STE.PYSQKR.EEI.KEVSTYIKKIGY.P.TVAFVP.SGWNGDNMLEPSANM | |
Retrocopy | -AYTLGVK*LIVGVNKMGSTETPYSQKR*EEIIKEVSTYIKKIGYSPNTVAFVPVSGWNGDNMLEPSANM |
Parental | PWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVV |
PWFKGWKVT.KDGN.SGTTLLEALDCILPPT..TDKPL.LPLQDVYKI.GIGTVP.G.VETGVLK.GMVV | |
Retrocopy | PWFKGWKVTHKDGNDSGTTLLEALDCILPPTHLTDKPLCLPLQDVYKISGIGTVPMGQVETGVLKSGMVV |
Parental | TFAPVNVTTEVKSVEMHHEALS |
TFA.V.VTT..KSVEMHH.ALS | |
Retrocopy | TFALVSVTTGGKSVEMHHVALS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 1486 .30 RPM |
SRP017611_kidney | 0 .10 RPM | 9381 .03 RPM |
SRP017611_liver | 0 .10 RPM | 6481 .18 RPM |