RetrogeneDB ID: | retro_vpac_140 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_2056:190834..191305(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL21 | ||
Ensembl ID: | ENSVPAG00000006206 | ||
Aliases: | None | ||
Description: | ribosomal protein L21 [Source:HGNC Symbol;Acc:10313] |
Percent Identity: | 67.9 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGTGTVQKGMPHKCYHGKTGRVYNVT-Q |
MTNT..KRRGT..MFSR.F.K..V.PLATYM.IY.KGDIVDI...GT.QKGMPHKCY.GKTGR.Y.V... | |
Retrocopy | MTNTERKRRGTHCMFSRLFTKYAVIPLATYM*IYSKGDIVDIT-MGTIQKGMPHKCYCGKTGRIYSVS<H |
Parental | HAVGIIVNKQVKGKILAKRINVRVEHIKHSKSRDSFLKRVRENDQKKKEAKEKGTWVQLKRQPAPP-REA |
HAVG..V..QVKGKILAK.I.V..EH.K.SKS..SFL..V.ENDQ.KKE.KEK..WVQLK.Q...P..E. | |
Retrocopy | HAVGT-VKEQVKGKILAKIISVHIEHMKYSKS*SSFLEHVKENDQEKKEGKEKRNWVQLK-QQLAP>SEK |
Parental | HFVRTNGKEPELLEPIPYEFMA |
H..RTN..EPELLEPIPY.FMA | |
Retrocopy | HTLRTNRMEPELLEPIPYKFMA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |