miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|101392333|gb|EB818096.1|EB818096 CGAGAGGAGACTTTGCTCGCTTTTGGTGGGCATCCGCGCGGAGCGTGACCACAGACGGTGTAGAGACTAGATAGATCGGA
AGGGGATCTAGGCATAGAGAGCGAGGAGGATGACCGGCGTTGTTGCAGGCGCCGGAGGGGGCAACAAGGCGGCGGGCGCC
ACGCTGCGGCTGCACCACTACCTTGTGATGGCCGGGGTGGCGGCGGCGTTCGTCCTCGCCTGCCTCCGGTACGCGCCGGA
CCCCGCGGGGTACGGCTTCCTGGCCGTGGCGCCGCGGCCGGTGGAGGCCGATGCTGGTGCCCGGCGGGACACCACTCCTC
CACCGCGCCCGTCGTCGTCGTCGTCGTCGGTGGTCATCTTCAACTTCGGTGACTCCAACTCCGACACGGGCGGCATGGCG
GCGGTCAACGGGATGAACATTAACCTGCCCGAGGGACGCACCTTCTTCCGCCGCCCCACCGGAAGGCTCTCCGATGGCCG
CCTCGTCATCGACTTCATCTGTGAGAGCCTGCACACGCCTTTCCTGAGCCCATACCTCAAGGCGCTGGGCGCGGATTTCA
GCAACGGCGTGAACTTCGCCATCGGCGGCTCGACGGCGACGCCGGGGGGCTCTCCATTCTCGCTGGACGTGCAGCTCCAT
CAGTGGCTCTACTTCAGGGCCAGGTCCATGGAGATGATCAACCTAGGACAGAGGCCTCCCATCGATCGCGAAGGATTCCG
AAAGCCATCTACACCATCGACATCGGGCAGAACGACGTGTCTGCTTACATG




Most similar to sp|O80522|GDL2_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O80522|GDL2_ARATH GDSL esterase/lipase At1g09390 OS=Arabidopsis
           thaliana GN=At1g09390 PE=2 SV=1
          Length = 370

 Score =  140 bits (352), Expect(2) = 9e-34
 Identities = 71/127 (55%), Positives = 95/127 (74%), Gaps = 4/127 (3%)
 Frame = +2

Query: 353 VIFNFGDSNSDTGGMAAVNGMNINLPEGRTFFRRPTGRLSDGRLVIDFICESLHTPFLSP 532
           VIFNFGDSNSDTGG+ A  G +I LP GR+FF+R TGRLSDGRLVIDF+C+SL+T  L+P
Sbjct: 37  VIFNFGDSNSDTGGLVAGLGYSIGLPNGRSFFQRSTGRLSDGRLVIDFLCQSLNTSLLNP 96

Query: 533 YLKAL-GADFSNGVNFAIGGSTATPGGSPFSLDVQLHQWLYFRARSMEMINLG---QRPP 700
           YL +L G+ F NG NFAI GS+  P   PF+L++QL Q+L+F++R++E+ ++    +   
Sbjct: 97  YLDSLVGSKFQNGANFAIVGSSTLPRYVPFALNIQLMQFLHFKSRALELASISDPLKEMM 156

Query: 701 IDREGFR 721
           I   GFR
Sbjct: 157 IGESGFR 163



 Score = 25.0 bits (53), Expect(2) = 9e-34
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +1

Query: 724 AIYTIDIGQNDVS 762
           A+Y IDIGQND++
Sbjct: 165 ALYMIDIGQNDIA 177


>sp|Q9FXB6|LIP4_ARATH GDSL esterase/lipase LIP-4 OS=Arabidopsis
           thaliana GN=LIP4 PE=2 SV=1
          Length = 373

 Score =  134 bits (337), Expect(2) = 5e-32
 Identities = 66/109 (60%), Positives = 81/109 (74%), Gaps = 1/109 (0%)
 Frame = +2

Query: 353 VIFNFGDSNSDTGGMAAVNGMNINLPEGRTFFRRPTGRLSDGRLVIDFICESLHTPFLSP 532
           VIFNFGDSNSDTGG+ A  G  I  P GR FFRR TGRLSDGRL+IDF+C+SL+T  L P
Sbjct: 40  VIFNFGDSNSDTGGLVAGLGYPIGFPNGRLFFRRSTGRLSDGRLLIDFLCQSLNTSLLRP 99

Query: 533 YLKALG-ADFSNGVNFAIGGSTATPGGSPFSLDVQLHQWLYFRARSMEM 676
           YL +LG   F NG NFAI GS   P   PFSL++Q+ Q+ +F++RS+E+
Sbjct: 100 YLDSLGRTRFQNGANFAIAGSPTLPKNVPFSLNIQVKQFSHFKSRSLEL 148



 Score = 25.0 bits (53), Expect(2) = 5e-32
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +1

Query: 724 AIYTIDIGQNDVS 762
           A+Y IDIGQND++
Sbjct: 168 ALYMIDIGQNDIA 180


>sp|Q6NLP7|GDL60_ARATH GDSL esterase/lipase At3g62280 OS=Arabidopsis
           thaliana GN=At3g62280 PE=2 SV=1
          Length = 365

 Score =  135 bits (340), Expect = 3e-31
 Identities = 70/138 (50%), Positives = 91/138 (65%)
 Frame = +2

Query: 353 VIFNFGDSNSDTGGMAAVNGMNINLPEGRTFFRRPTGRLSDGRLVIDFICESLHTPFLSP 532
           ++ NFGDSNSDTGG+ A  G+ I LP G TFF R TGRL DGRL++DF CE L   +LSP
Sbjct: 36  ILINFGDSNSDTGGVLAGVGLPIGLPHGITFFHRGTGRLGDGRLIVDFYCEHLKMTYLSP 95

Query: 533 YLKALGADFSNGVNFAIGGSTATPGGSPFSLDVQLHQWLYFRARSMEMINLGQRPPIDRE 712
           YL +L  +F  GVNFA+ G+TA P  S F L +Q+ Q+++F+ RS E+I+ G+R  ID  
Sbjct: 96  YLDSLSPNFKRGVNFAVSGATALPIFS-FPLAIQIRQFVHFKNRSQELISSGRRDLIDDN 154

Query: 713 GFRKPSTPSTSGRTTCLL 766
           GFR        G+   LL
Sbjct: 155 GFRNALYMIDIGQNDLLL 172