miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


mature miRNA: TTTTTTCTAGGACAGAGGGAGT (by default)


#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Oryza sativa GSM693280 TTTTTTCTAGGACAGAGGGAGT TCCCTCCATCATAAAATAAATC down 5 0


Secondary structure

GGCATATTGACTTCATCTATGCTCCCTCCATCATAAAATAAATCAACTTTCCAAGTTCACGTACGAAAGTTGTTTTTTCTAGGACAGAGGGAGTATAACAATGATATAAAAGA
------------------------------------------------------------------------TTTTTTCTAGGACAGAGGGAGT 	9
------------------------------------------------------------------------TTTTTTCTAGGACAGAGGGAG 	2
-------------------------------------------------------------------------TTTTTCTAGGACAGAGGGAGT 	7
-------------------------------------------------------------------------TTTTTCTAGGACAGAGGGAGTA 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Oryza sativa GSM686040-31373 TTTTTTCTAGGACAGAGGGAGT TCCCTCCATCATAAAATAAATC down 5 0


Secondary structure

GGCATATTGACTTCATCTATGCTCCCTCCATCATAAAATAAATCAACTTTCCAAGTTCACGTACGAAAGTTGTTTTTTCTAGGACAGAGGGAGTATAACAATGATATAAAAGA
-----------------------------------------------------------------------GTTTTTTCTAGGACAGAGGGAGT 	1
------------------------------------------------------------------------TTTTTTCTAGGACAGAGGGAGT 	10
------------------------------------------------------------------------TTTTTTCTAGGACAGAGGGAG 	1
-------------------------------------------------------------------------TTTTTCTAGGACAGAGGGAGT 	2


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Oryza sativa GSM686040-31373 TTTTTTCTAGGACAGAGGGAGT TCCCTCTATCCCAGAAAAAAAC down 2 0


Secondary structure

TTAGTGCAATTTACACATTTACTCCCTCTATCCCAGAAAAAAACAATTCCTAGCTTTGCATTTGGATAAACAATTGTTCAGATTTAAAGTTAGGAATTGTTTTTTTTCTAGGACAGAGGGAGTAGATGTGTAATTTGTGCAT
-----------------------------------------------------------------------------------------------------TTTTTTCTAGGACAGAGGGAGT 	10
-----------------------------------------------------------------------------------------------------TTTTTTCTAGGACAGAGGGAG 	1
------------------------------------------------------------------------------------------------------TTTTTCTAGGACAGAGGGAGTAGA 	2
------------------------------------------------------------------------------------------------------TTTTTCTAGGACAGAGGGAGT 	2
------------------------------------------------------------------------------------------------------------TAGGACAGAGGGAGTAGATGT 	1
-----------------------------------------------------------------------------------------------------------------CAGAGGGAGTAGATGTGTAAT 	1
-----------------------------------------------------------------------------------------------------------------CAGAGGGAGTAGATGTGTAA 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Oryza sativa GSM520637-18674 TTTTTTCTAGGACAGAGGGAGT TCCCTCCATCATAAAATAAATC down 5 0


Secondary structure

GGCATATTGACTTCATCTATGCTCCCTCCATCATAAAATAAATCAACTTTCCAAGTTCACGTACGAAAGTTGTTTTTTCTAGGACAGAGGGAGTATAACAATGATATAAAAGA
------------------------------------------------------------------------TTTTTTCTAGGACAGAGGGAG 	1
------------------------------------------------------------------------TTTTTTCTAGGACAGAGGGAGT 	19
------------------------------------------------------------------------TTTTTTCTAGGACAGAGGG 	1
-------------------------------------------------------------------------TTTTTCTAGGACAGAGGGAGT 	14
-------------------------------------------------------------------------TTTTTCTAGGACAGAGGGAGTA 	1
-------------------------------------------------------------------------TTTTTCTAGGACAGAGGGAG 	1
--------------------------------------------------------------------------TTTTCTAGGACAGAGGGAGT 	5
---------------------------------------------------------------------------TTTCTAGGACAGAGGGAGT 	6


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Oryza sativa GSM693279 TTTTTTCTAGGACAGAGGGAGT TCCCTCCATCATAAAATAAATC down 5 0


Secondary structure

GGCATATTGACTTCATCTATGCTCCCTCCATCATAAAATAAATCAACTTTCCAAGTTCACGTACGAAAGTTGTTTTTTCTAGGACAGAGGGAGTATAACAATGATATAAAAGA
------------------------------------------------------------------------TTTTTTCTAGGACAGAGGGAGT 	25
------------------------------------------------------------------------TTTTTTCTAGGACAGAGGGAG 	4
------------------------------------------------------------------------TTTTTTCTAGGACAGAGGGA 	1
-------------------------------------------------------------------------TTTTTCTAGGACAGAGGGAGT 	15
-------------------------------------------------------------------------TTTTTCTAGGACAGAGGGAGTA 	3
-------------------------------------------------------------------------TTTTTCTAGGACAGAGGGAG 	2
-------------------------------------------------------------------------TTTTTCTAGGACAGAGGGA 	1
--------------------------------------------------------------------------TTTTCTAGGACAGAGGGAGT 	1
---------------------------------------------------------------------------TTTCTAGGACAGAGGGAGTA 	1
---------------------------------------------------------------------------TTTCTAGGACAGAGGGAGT 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Oryza sativa GSM520639-18678 TTTTTTCTAGGACAGAGGGAGT TCCCTCCATCATAAAATAAATC down 5 0


Secondary structure

GGCATATTGACTTCATCTATGCTCCCTCCATCATAAAATAAATCAACTTTCCAAGTTCACGTACGAAAGTTGTTTTTTCTAGGACAGAGGGAGTATAACAATGATATAAAAGA
----------------------------------------------------------------------TGTTTTTTCTAGGACAGAGGGAGT 	2
------------------------------------------------------------------------TTTTTTCTAGGACAGAGGGAG 	3
------------------------------------------------------------------------TTTTTTCTAGGACAGAGGGAGT 	28
-------------------------------------------------------------------------TTTTTCTAGGACAGAGGGAGT 	24
--------------------------------------------------------------------------TTTTCTAGGACAGAGGGAGT 	4
--------------------------------------------------------------------------TTTTCTAGGACAGAGGGAG 	2
---------------------------------------------------------------------------TTTCTAGGACAGAGGGAGT 	16


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Oryza sativa GSM520639-18678 TTTTTTCTAGGACAGAGGGAGT TCCCTCTATCCCAGAAAAAAAC down 2 0


Secondary structure

TTAGTGCAATTTACACATTTACTCCCTCTATCCCAGAAAAAAACAATTCCTAGCTTTGCATTTGGATAAACAATTGTTCAGATTTAAAGTTAGGAATTGTTTTTTTTCTAGGACAGAGGGAGTAGATGTGTAATTTGTGCAT
-----------------TTTACTCCCTCTATCCCAGA 	1
---------------------------------------------ATTCCTAGCTTTGCATTTGGA 	1
------------------------------------------------------------------------ATTGTTCAGATTTAAAGTTAGGAAT 	1
------------------------------------------------------------------------ATTGTTCAGATTTAAAGTTAGGAATT 	2
-------------------------------------------------------------------------TTGTTCAGATTTAAAGTTAGGAATT 	2
------------------------------------------------------------------------------------TAAAGTTAGGAATTGTTTT 	2
-----------------------------------------------------------------------------------------------------TTTTTTCTAGGACAGAGGGAG 	3
-----------------------------------------------------------------------------------------------------TTTTTTCTAGGACAGAGGGAGT 	28
------------------------------------------------------------------------------------------------------TTTTTCTAGGACAGAGGGAGT 	24
------------------------------------------------------------------------------------------------------TTTTTCTAGGACAGAGGGAGTAGA 	3
-------------------------------------------------------------------------------------------------------TTTTCTAGGACAGAGGGAGT 	4
-------------------------------------------------------------------------------------------------------TTTTCTAGGACAGAGGGAG 	2
--------------------------------------------------------------------------------------------------------TTTCTAGGACAGAGGGAGT 	16
--------------------------------------------------------------------------------------------------------TTTCTAGGACAGAGGGAGTAG 	5
---------------------------------------------------------------------------------------------------------TTCTAGGACAGAGGGAGTAGATGT 	2
------------------------------------------------------------------------------------------------------------TAGGACAGAGGGAGTAGATGT 	25
-------------------------------------------------------------------------------------------------------------AGGACAGAGGGAGTAGATGTG 	1
----------------------------------------------------------------------------------------------------------------ACAGAGGGAGTAGATGTGT 	1


HuntMi prediction: true miRNA