2041 records found
1 | Arabidopsis thaliana | TTGAGTTGTATGTGAATACG | alignment | plot | GSM278334-4059 | AT1G67880.1 cdna:known chromosome:TAIR10:1:25453921:25455735:-1 gene:AT1G67880 transcript:AT1G67880.1 | 2 | 1582 | 0.02 | 2 | 1 | 3 | 5' TTGAGTTGTATGTGAATACG 3' ||o|o||||||o|| |o||| 3' ATTTAATTTAACATATACATGTGCTTTCACTG 5' |
2 | Arabidopsis thaliana | TGACAGAAGAAAGAGAGCAC | alignment | plot | GSM278334-4059 | AT1G27360.3 cdna:known chromosome:TAIR10:1:9501777:9503869:1 gene:AT1G27360 transcript:AT1G27360.3 | 0 | 1250 | 0 | 8 | 2 | 1 | 5' TGACAGAAGAAAGAGAGCAC 3' |||||||||| ||||||||| 3' TCCAACTGTCTTCTCTCTCTCGTGCCACCTAT 5' |
3 | Arabidopsis thaliana | TTCCACAGCTTTCTTGAACTT | alignment | plot | GSM278334-4059 | AT5G61440.1 cdna:known chromosome:TAIR10:5:24707500:24708893:1 gene:AT5G61440 transcript:AT5G61440.1 | 0 | 719 | 0 | 5 | 5 | 2.5 | 5' TTCCACAGCTTTCTTGAACTT 3' |o| || |||||||||||||| 3' GAATAGGTTG-CGAAAGAACTTGAATAACTAT 5' |
4 | Arabidopsis thaliana | TTCGCTTGCAGAGAGAAATCAC | alignment | plot | GSM278334-4059 | AT2G27400.1 cdna:known chromosome:TAIR10:2:11721539:11722468:-1 gene:AT2G27400 transcript:AT2G27400.1 | 0 | 379 | 0 | 4 | 4 | 1.5 | 5' TTCGCTTGCAGAGAGAAATCAC 3' |||||||| |||||o||||||| 3' GAGTAAGCGAACATCTCTTTTTAGTGTTGTTT 5' |
5 | Arabidopsis thaliana | TTGACAGAAGATAGAGAGCAC | alignment | plot | GSM278334-4059 | AT1G27360.3 cdna:known chromosome:TAIR10:1:9501777:9503869:1 gene:AT1G27360 transcript:AT1G27360.3 | 2 | 1251 | 0 | 3 | 0.75 | 1 | 5' TTGACAGAAGATAGAGAGCAC 3' ||||||||||| ||||||||| 3' CTCCAACTGTCTTCTCTCTCTCGTGCCACCTA 5' |
6 | Arabidopsis thaliana | TTTTCTTCTACTTCTTGCACA | alignment | plot | GSM278334-4059 | AT1G30890.2 cdna:known chromosome:TAIR10:1:10994440:10996134:1 gene:AT1G30890 transcript:AT1G30890.2 | 1 | 956 | 0.03 | 3 | 1.5 | 4 | 5' TTTTCTTCTACTTCTTGCACA 3' |||||||| || || |||| | 3' TTGAAAAAGAAG-TGCAGTACGTTTACTTATC 5' |
7 | Arabidopsis thaliana | TCTATCTTCTTCGTCTTCGAT | alignment | plot | GSM278334-4059 | AT1G76780.1 cdna:known chromosome:TAIR10:1:28816641:28822256:1 gene:AT1G76780 transcript:AT1G76780.1 | 2 | 189 | 0.04 | 4 | 0.00569801 | 3 | 5' TCTATCTTCTTCGTCTTCGAT 3' ||| |||||||| ||o||o|| 3' AAGAAGA-AGAAGAAGAAGGAGTTAGAATTTA 5' |
8 | Arabidopsis thaliana | CATCGTCTTCTTCCTCGATC | alignment | plot | GSM278334-4059 | AT1G21460.1 cdna:known chromosome:TAIR10:1:7511850:7513361:-1 gene:AT1G21460 transcript:AT1G21460.1 | 2 | 975 | 0.02 | 2 | 2 | 2.5 | 5' CATCGTC-TTCTTCCTCGATC 3' ||||||| |||||| ||o||| 3' TCCGTAGCAGTAAGAAGTAGTTAGTGATCACA 5' |
9 | Arabidopsis thaliana | AATTGGGTTTATGCTAGAGTT | alignment | plot | GSM278334-4059 | AT1G56280.2 cdna:novel chromosome:TAIR10:1:21072855:21074877:-1 gene:AT1G56280 transcript:AT1G56280.2 | 2 | 1015 | 0.01 | 21 | 10.5 | 3.5 | 5' AATTGGGTTTATGCTAGAGTT 3' ||| |||||||||||| || o 3' GTGGTTATCCCAAATACGATGTCTGTTCTCCT 5' |
10 | Arabidopsis thaliana | TTGAACATGGTTTATTAGGAA | alignment | plot | GSM278334-4059 | AT3G02470.3 cdna:known chromosome:TAIR10:3:509096:511489:1 gene:AT3G02470 transcript:AT3G02470.3 | 2 | 1655 | 0.04 | 2 | 0.5 | 3 | 5' TTGAACATGGTTTATTAGGAA 3' |o||| ||o||| |||||||| 3' TTCGAGCTTTTATCAA-TAATCCTTCTTTTTA 5' |
11 | Arabidopsis thaliana | GTCATGGGGTATGATCGAATG | alignment | plot | GSM278334-4059 | AT5G52060.1 cdna:known chromosome:TAIR10:5:21152214:21154244:-1 gene:AT5G52060 transcript:AT5G52060.1 | 1 | 1453 | 0 | 3 | 3 | 2 | 5' GTCATGGGGT-ATGATCGAATG 3' ||||o|||o| ||||||||||| 3' ACCGCAGTGCCCTACTACTAGCTTACAAAGGG 5' |
12 | Arabidopsis thaliana | AAAACCCGGAATTTTCCCGC | alignment | plot | GSM278334-4059 | AT2G27710.4 cdna:known chromosome:TAIR10:2:11816634:11817867:1 gene:AT2G27710 transcript:AT2G27710.4 | 2 | 528 | 0.02 | 2 | 0.5 | 4 | 5' AAAACCCGGAATTTTCCCGC 3' |||| ||||| ||||| || 3' GTTGTTTT-GGCCTGAAAAGTACGATGATGGT 5' |
13 | Arabidopsis thaliana | TCCGGAGGGATTCCTTCCTT | alignment | plot | GSM278334-4059 | AT4G05320.5 cdna:known chromosome:TAIR10:4:2718170:2720133:1 gene:AT4G05320 transcript:AT4G05320.5 | 2 | 648 | 0.01 | 5 | 0.833333 | 0 | 5' TCCGGAGGGATTCCTTCCTT 3' |||||||||||||||||||| 3' GACCAGGCCTCCCTAAGGAAGGAATAGGACCT 5' |
14 | Arabidopsis thaliana | AACTCGAACCCGAACCTGAA | alignment | plot | GSM278334-4059 | AT5G64260.1 cdna:known chromosome:TAIR10:5:25703929:25705316:1 gene:AT5G64260 transcript:AT5G64260.1 | 2 | 1091 | 0 | 2 | 2 | 2.5 | 5' AACTCGA-ACCCGAACCTGAA 3' |||o||| ||||o||||o||| 3' GGTTTGGGCTCTGGGTTTGGGCTTTCTAAAAA 5' |
15 | Arabidopsis thaliana | GAACCCAAGACCTCACCCTT | alignment | plot | GSM278334-4059 | AT5G22650.1 cdna:known chromosome:TAIR10:5:7534017:7536273:1 gene:AT5G22650 transcript:AT5G22650.1 | 2 | 1045 | 0.02 | 3 | 1.5 | 3 | 5' GAACCCAAGACCTCACCCTT 3' o|||||||o||||| || || 3' AGCTTTTGGGTTTTGGAGAGG-AACTAGGTGC 5' |
16 | Arabidopsis thaliana | TTCCACAGCTTTCTTGAACTT | alignment | plot | GSM278334-4059 | AT5G27850.1 cdna:known chromosome:TAIR10:5:9873152:9874598:1 gene:AT5G27850 transcript:AT5G27850.1 | 2 | 542 | 0.02 | 5 | 5 | 3 | 5' TTCCAC-AGCTTTCTTGAACTT 3' |||| | ||||||||oo||||| 3' CGAAAGGAGATCGAAAGAGTTTGAAGGAAGGG 5' |
17 | Arabidopsis thaliana | TGTCTTCATCGTCATCACAA | alignment | plot | GSM278334-4059 | AT5G37430.1 cdna:known chromosome:TAIR10:5:14842430:14844308:1 gene:AT5G37430 transcript:AT5G37430.1 | 1 | 1756 | 0.04 | 12 | 0.8 | 4 | 5' TGTCTTCATCGTCATCACAA 3' oo|| |||o|o||||||| | 3' AGTAGTAGTAGTGGTAGTAGTGGTAGTAGTAG 5' |
18 | Arabidopsis thaliana | TGTCTTCATCGTCATCACAA | alignment | plot | GSM278334-4059 | AT5G37430.1 cdna:known chromosome:TAIR10:5:14842430:14844308:1 gene:AT5G37430 transcript:AT5G37430.1 | 1 | 1789 | 0.04 | 12 | 0.8 | 4 | 5' TGTCTTCATCGTCATCACAA 3' oo|| |||o|o||||||| | 3' AGTAGTAGTAGTGGTAGTAGTGGTAGTAGTAG 5' |
19 | Arabidopsis thaliana | TCCAAAGGGATCGCATTGATCC | alignment | plot | GSM278334-4059 | AT3G26810.1 cdna:known chromosome:TAIR10:3:9867845:9870640:1 gene:AT3G26810 transcript:AT3G26810.1 | 0 | 2010 | 0 | 6 | 6 | 2 | 5' TCCAAAGGGATCGCATTGATCC 3' |||||||||||||||||| | | 3' CTGTAGGTTTCCCTAGCGTAACAAAGTATGAA 5' |
20 | Arabidopsis thaliana | CCTTTGGCACCTTTTTTGGCG | alignment | plot | GSM278334-4059 | AT1G72260.1 cdna:known chromosome:TAIR10:1:27198433:27199444:-1 gene:AT1G72260 transcript:AT1G72260.1 | 2 | 421 | 0.03 | 7 | 7 | 4 | 5' CCTTTGGCACCTT-TTTTGGCG 3' ||o||||||| || ||oo|o|| 3' TGTAGGGAACCGTGTAACAAGGCTGCGAGGTA 5' |
21 | Arabidopsis thaliana | AGAGAATGAGGTTGAGCCAA | alignment | plot | GSM278334-4059 | AT4G13590.2 cdna:novel chromosome:TAIR10:4:7901251:7904025:-1 gene:AT4G13590 transcript:AT4G13590.2 | 0 | 1292 | 0.02 | 4 | 2 | 4 | 5' AGAGAATGAGGTTG-AGCCAA 3' |o|||||| ||o|| ||| || 3' GAGGTTTCTTACACCGACGTCGTTTTTGATTC 5' |
22 | Arabidopsis thaliana | GAGGAGGAGGAGCACCACCGT | alignment | plot | GSM278334-4059 | AT1G13930.1 cdna:known chromosome:TAIR10:1:4761042:4761725:1 gene:AT1G13930 transcript:AT1G13930.1 | 2 | 392 | 0 | 4 | 1.33333 | 3 | 5' GAGGAGGAGGAGCACCACCGT 3' ||||||||||| ||||| |oo 3' CAGCCTCCTCCTCCTGGTGGTCGTGGCCACCT 5' |
23 | Arabidopsis thaliana | TCCGAATCAGAATCGGAGTC | alignment | plot | GSM278334-4059 | AT3G24040.1 cdna:known chromosome:TAIR10:3:8680877:8683289:-1 gene:AT3G24040 transcript:AT3G24040.1 | 1 | 1250 | 0.02 | 2 | 2 | 3.5 | 5' TCCGAATCAGAATCGGAGTC 3' || |||o|||||o||| |o| 3' GGATAGCCTTGGTCTTGGCC-CGGCTTCCTAT 5' |
24 | Arabidopsis thaliana | TCATCTTCATCATCATCATCT | alignment | plot | GSM278334-4059 | AT1G03530.1 cdna:known chromosome:TAIR10:1:880496:883391:-1 gene:AT1G03530 transcript:AT1G03530.1 | 2 | 1024 | 0.05 | 10 | 0.47619 | 1.5 | 5' TCATCTTCATCATCATCATCT 3' ||||| ||||||||||||||o 3' TAGTAGTAGTAGTAGTAGTAGTAGGAGTAGGA 5' |
25 | Arabidopsis thaliana | TCTTCTTCGTCGCCATTACT | alignment | plot | GSM278334-4059 | AT4G38590.1 cdna:known chromosome:TAIR10:4:18036092:18040928:1 gene:AT4G38590 transcript:AT4G38590.1 | 0 | 2604 | 0.01 | 3 | 0.145833 | 4 | 5' TCTTCTTCGTCGCCATTACT 3' |||||||| ||o |||o| | 3' AAGAAGAAGAAGAAGTAGTAGT-AGAAGTAGC 5' |
26 | Arabidopsis thaliana | TCATCTTCATCATCATCATCT | alignment | plot | GSM278334-4059 | AT4G38590.1 cdna:known chromosome:TAIR10:4:18036092:18040928:1 gene:AT4G38590 transcript:AT4G38590.1 | 0 | 2604 | 0.03 | 3 | 0.145833 | 2 | 5' TCATCTTCATCATCATCATCT 3' || ||||| |||||||||||| 3' AAGAAGAAGAAGAAGTAGTAGTAGAAGTAGCA 5' |
27 | Arabidopsis thaliana | CGGATCCGGATACGGATCCGG | alignment | plot | GSM278334-4059 | AT5G43850.1 cdna:known chromosome:TAIR10:5:17627182:17629159:-1 gene:AT5G43850 transcript:AT5G43850.1 | 2 | 390 | 0.01 | 2 | 2 | 3.5 | 5' CGGATCCGGATACGGATCCGG 3' | ||||o|||||||||||oo 3' TCCAACGTAGGTCTATGCCTAGGTTGCTAGTA 5' |
28 | Arabidopsis thaliana | CTCGACCTGAGGGTCGAGTGGT | alignment | plot | GSM278334-4059 | AT4G34050.1 cdna:known chromosome:TAIR10:4:16310775:16312216:1 gene:AT4G34050 transcript:AT4G34050.1 | 2 | 786 | 0.01 | 2 | 1 | 4 | 5' CTCGACCTGAGGGTCGAGTGGT 3' ||||| |o||||||| ||oo|o 3' TCTAGAGCTAGGCTCCCAG-TCGTCGTTCTCG 5' |
29 | Arabidopsis thaliana | TGTCTTCATCGTCATCACAA | alignment | plot | GSM278334-4059 | AT1G21722.1 cdna:known chromosome:TAIR10:1:7628456:7629252:1 gene:AT1G21722 transcript:AT1G21722.1 | 1 | 415 | 0.01 | 2 | 0.392857 | 3 | 5' TGTCTTCATCGTCATCACAA 3' oo|| ||||||||||||| | 3' AGTTGTAGTAGTAGCAGTAGTGATAATAGTAG 5' |
30 | Arabidopsis thaliana | TCATCATCATCATCATCTTCT | alignment | plot | GSM278334-4059 | AT1G26890.1 cdna:novel chromosome:TAIR10:1:9317589:9319246:1 gene:AT1G26890 transcript:AT1G26890.1 | 2 | 785 | 0.01 | 4 | 0.0113636 | 0.5 | 5' TCATCATCATCATCATCTTCT 3' |||||||||||||||||o||| 3' TAGTAGTAGTAGTAGTAGTAGGAGATGGAGTA 5' |
31 | Arabidopsis thaliana | TCATTGAGTGCAGCGTTGATG | alignment | plot | GSM278334-4059 | AT4G23130.2 cdna:known chromosome:TAIR10:4:12117598:12120134:-1 gene:AT4G23130 transcript:AT4G23130.2 | 0 | 1964 | 0 | 2 | 1 | 4 | 5' TCATTGAGTGCAGCGTTGATG 3' | ||o|| ||||||o|oo||| 3' TATCATTAGCT-ACGTCGTAGTTACCTTGTTT 5' |
32 | Arabidopsis thaliana | TTCGCTTGCAGAGAGAAATCAC | alignment | plot | GSM278334-4059 | AT2G39681.1 cdna:known chromosome:TAIR10:2:16539384:16540417:-1 gene:AT2G39681 transcript:AT2G39681.1 | 0 | 418 | 0 | 13 | 13 | 1.5 | 5' TTCGCTTGCAGAGAGAAATCAC 3' |||||||| |||||o||||||| 3' TAGTAAGCGAACCTCTCTTTTTAGTGTTTTGG 5' |
33 | Arabidopsis thaliana | GTATAGCATAATGAGCAATCA | alignment | plot | GSM278334-4059 | AT3G12120.1 cdna:known chromosome:TAIR10:3:3860285:3863050:-1 gene:AT3G12120 transcript:AT3G12120.1 | 2 | 1451 | 0.04 | 6 | 3 | 3 | 5' GTATAGCATAATGAGCAATCA 3' oo|||o||||||||||| o|| 3' AGGGTGTATTGTATTACTCGTCGGTTTTACAG 5' |
34 | Arabidopsis thaliana | AACAGAGGAAAAACAGAAACA | alignment | plot | GSM278334-4059 | AT1G80120.1 cdna:known chromosome:TAIR10:1:30139101:30140204:1 gene:AT1G80120 transcript:AT1G80120.1 | 0 | 762 | 0.05 | 2 | 2 | 3 | 5' AACAGAGGAAAAACAGAAACA 3' || |||o||||| ||o||||| 3' GGTTTTTTCTTCTTTT-GTTTTTGTTTTTTTC 5' |
35 | Arabidopsis thaliana | TTGAGAGCAACAAGACATAAT | alignment | plot | GSM278334-4059 | AT4G13495.2 cdna:known chromosome:TAIR10:4:7842967:7846774:1 gene:AT4G13495 transcript:AT4G13495.2 | 2 | 756 | 0 | 2 | 1 | 2 | 5' TTGAGAGCAACAAGACATAAT 3' |||||| ||||||||||||| 3' CGATAACTCTAGTTGTTCTGTATTCTTTCTCA 5' |
36 | Arabidopsis thaliana | TTAGATTCACGCACAAACTCG | alignment | plot | GSM278334-4059 | AT1G31280.1 cdna:known chromosome:TAIR10:1:11181711:11185344:1 gene:AT1G31280 transcript:AT1G31280.1 | 0 | 3233 | 0 | 49 | 49 | 1 | 5' TTAGATTCACGCACAAACTCG 3' |||||||||||||||||||| 3' GGTTAATCTAAGTGCGTGTTTGAGGAAAGATG 5' |
37 | Arabidopsis thaliana | TCCAAAGGGATCGCATTGATCC | alignment | plot | GSM278334-4059 | AT1G12820.1 cdna:known chromosome:TAIR10:1:4368760:4371293:-1 gene:AT1G12820 transcript:AT1G12820.1 | 0 | 1895 | 0 | 8 | 8 | 2 | 5' TCCAAAGGGATCGCATTGATCC 3' |||||||||||||||||| | | 3' CTGTAGGTTTCCCTAGCGTAACAAAGCATGGA 5' |
38 | Arabidopsis thaliana | GCTGGAGGAACTGCAGCTATG | alignment | plot | GSM278334-4059 | AT5G48485.1 cdna:known chromosome:TAIR10:5:19646232:19646802:-1 gene:AT5G48485 transcript:AT5G48485.1 | 2 | 411 | 0.01 | 5 | 5 | 4 | 5' GCTGGAGGAACTGCAGCTATG 3' o|o|o|o||||o| |||o||| 3' GTTGTGGCTTTCTTGGC-TCGGTACCTCTCAA 5' |
39 | Arabidopsis thaliana | AAACGACGTCGTTGGTGATT | alignment | plot | GSM278334-4059 | AT5G40350.1 cdna:known chromosome:TAIR10:5:16138544:16141134:-1 gene:AT5G40350 transcript:AT5G40350.1 | 2 | 671 | 0.03 | 2 | 2 | 3 | 5' AAACGACGTCGTTGGTGATT 3' | ||||||||||||| || | 3' CAACTATGCTGCAGCAACCTCTTATGTATAGG 5' |
40 | Arabidopsis thaliana | ACCATCAATTCATCGTGGCCG | alignment | plot | GSM278334-4059 | AT3G18760.2 cdna:known chromosome:TAIR10:3:6457690:6459627:-1 gene:AT3G18760 transcript:AT3G18760.2 | 2 | 560 | 0.04 | 2 | 1 | 4 | 5' ACCATCAATTCATCGTGGCCG 3' ||||o|| ||||| ||oo||o 3' CGTATGGTGGTGAAGTA-CATTGGTTTTTGTA 5' |
41 | Arabidopsis thaliana | CTATCATCATCATCCTCGTAA | alignment | plot | GSM278334-4059 | AT2G11910.2 cdna:known chromosome:TAIR10:2:4805684:4807319:-1 gene:AT2G11910 transcript:AT2G11910.2 | 2 | 509 | 0.04 | 3 | 1.5 | 3.5 | 5' CTATCATCATCATCCTCGTAA 3' | ||||||||| |||||o| | 3' TGTAG-TAGTAGTAGAAGGAGTAGTAGCAGAA 5' |
42 | Arabidopsis thaliana | CATCGTCTTCTTCCTCGATC | alignment | plot | GSM278334-4059 | AT2G11910.2 cdna:known chromosome:TAIR10:2:4805684:4807319:-1 gene:AT2G11910 transcript:AT2G11910.2 | 2 | 508 | 0.02 | 2 | 1 | 2.5 | 5' CATCGTCTTCTTCCTCGATC 3' ||||o|| |||||||| ||| 3' TGTAGTAGTAGTAGAAGGAG-TAGTAGCAGAA 5' |
43 | Arabidopsis thaliana | TTCGAGGCCTATTAAACCTCTG | alignment | plot | GSM278334-4059 | AT5G54770.1 cdna:known chromosome:TAIR10:5:22246592:22248332:1 gene:AT5G54770 transcript:AT5G54770.1 | 2 | 1179 | 0.03 | 26 | 26 | 4 | 5' TTCGAGGCCTATTAAACCTCTG 3' |||o||o| |||||||| o||o 3' TTTCAAGTTCTGTATAATTTGTGGATTTGAGG 5' |
44 | Arabidopsis thaliana | TGACAGAAAGAGAGGTGAGCA | alignment | plot | GSM278334-4059 | AT1G32230.3 cdna:known chromosome:TAIR10:1:11612118:11616218:1 gene:AT1G32230 transcript:AT1G32230.3 | 0 | 2498 | 0.04 | 13 | 4.33333 | 4 | 5' TGACAGAAAGAGAGGTGAGCA 3' o||||||||||o|o|| o|| 3' AAGTGCTGTCTTTCTTTTCAGCTGTGTAAAAT 5' |
45 | Arabidopsis thaliana | TCGACCTCGTGGTCGAGTGG | alignment | plot | GSM278334-4059 | AT5G61580.2 cdna:known chromosome:TAIR10:5:24761091:24764014:1 gene:AT5G61580 transcript:AT5G61580.2 | 1 | 1816 | 0 | 2 | 2 | 4 | 5' TCGACCTCGTGGTCGAG-TGG 3' ||o|||||o| || ||| ||| 3' GTAGAGTTGGAGTAGCAACTCTACCTACAACT 5' |
46 | Arabidopsis thaliana | AAACGAACAAAAAACTGATGG | alignment | plot | GSM278334-4059 | AT1G13860.1 cdna:known chromosome:TAIR10:1:4743309:4746956:-1 gene:AT1G13860 transcript:AT1G13860.1 | 0 | 2760 | 0.04 | 6 | 1.5 | 4 | 5' AAACGAACAAAAAACTGATGG 3' |||||||||||||| |o| o 3' ATGCTTTGCTTGTTTTTT-ATTTTGACTCTTG 5' |
47 | Arabidopsis thaliana | TGACCTGCCAAAGGAGAGTTG | alignment | plot | GSM278334-4059 | AT1G02330.1 cdna:known chromosome:TAIR10:1:462075:463612:-1 gene:AT1G02330 transcript:AT1G02330.1 | 2 | 984 | 0.03 | 2 | 2 | 4 | 5' TGACCTGCCAAAGGAGAGTTG 3' |o|| | |||||o||| |||| 3' TTAGATTGTA-GGTTTTCTCACAACAATGGGC 5' |
48 | Arabidopsis thaliana | TTGTACAAATTTAAGTGTACG | alignment | plot | GSM278334-4059 | AT1G16890.1 cdna:known chromosome:TAIR10:1:5776346:5778263:-1 gene:AT1G16890 transcript:AT1G16890.1 | 2 | 725 | 0.04 | 2 | 0.666667 | 3.5 | 5' TTGTACAAATTTA-AGTGTACG 3' ||o||||||||o| || ||||o 3' GATCAATATGTTTAAGTCTCTCATGTTTAGAA 5' |
49 | Arabidopsis thaliana | AGAATCCTGATGATGCTGC | alignment | plot | GSM278334-4059 | AT1G53400.1 cdna:known chromosome:TAIR10:1:19924752:19926631:1 gene:AT1G53400 transcript:AT1G53400.1 | 1 | 677 | 0.04 | 2 | 2 | 3.5 | 5' AGAATCCTGATGATGCTGC 3' ||||||||o||| o||o| 3' CGTCTCTTAGGATTACATTGATGAATGTGTGT 5' |
50 | Arabidopsis thaliana | TGAGAAGAAGAAGAAGAAAA | alignment | plot | GSM278334-4059 | AT5G55910.1 cdna:known chromosome:TAIR10:5:22639844:22642354:-1 gene:AT5G55910 transcript:AT5G55910.1 | 0 | 1943 | 0.02 | 3 | 3 | 2.5 | 5' TGAGAAGAAGAAGAAGAAAA 3' |o|o||||||||o|| |||| 3' TTTAATTTTTCTTCTTTTT-TTTTCTTTGTGT 5' |
51 | Arabidopsis thaliana | TGAGAAGAAGAAGAAGAAAA | alignment | plot | GSM278334-4059 | AT2G40520.1 cdna:known chromosome:TAIR10:2:16923068:16925914:1 gene:AT2G40520 transcript:AT2G40520.1 | 2 | 1787 | 0.04 | 6 | 0.0093439 | 1.5 | 5' TGAGAAGAAGAAGAAGAAAA 3' o|||||||||||||||||| 3' TCTTCTTCTTCTTCTTCTTCTTTTTCTTTTTG 5' |
52 | Arabidopsis thaliana | TTTGCGATGAGTTTGCGAGGAT | alignment | plot | GSM278334-4059 | AT2G40660.1 cdna:known chromosome:TAIR10:2:16965933:16969035:1 gene:AT2G40660 transcript:AT2G40660.1 | 1 | 1307 | 0 | 3 | 3 | 4 | 5' TTTGCGA-TGAGTTTGCGAGGAT 3' ||| |o| |||||||||||o || 3' GAAAAAGGTTGACTCAAACGCTTATAGTTTCT 5' |
53 | Arabidopsis thaliana | TTGACAGAAGATAGAGAGCAC | alignment | plot | GSM278334-4059 | AT5G43270.2 cdna:known chromosome:TAIR10:5:17360305:17363773:-1 gene:AT5G43270 transcript:AT5G43270.2 | 2 | 1160 | 0 | 2 | 0.666667 | 1 | 5' TTGACAGAAGATAGAGAGCAC 3' ||||||||||| ||||||||| 3' CTTAAACTGTCTTCTCTCTCTCGTGGTAGTTC 5' |
54 | Arabidopsis thaliana | GTTCCGGCGAGTCTGTTCCC | alignment | plot | GSM278334-4059 | AT3G26520.1 cdna:known chromosome:TAIR10:3:9722443:9723815:-1 gene:AT3G26520 transcript:AT3G26520.1 | 2 | 801 | 0 | 5 | 5 | 3.5 | 5' GTTCCGGCGAGTCTGTTCCC 3' o||||||||||||oooo || 3' CTATTAAGGCCGCTCAGGTGGTGGTTATTCTC 5' |
55 | Arabidopsis thaliana | TATGAGAGTATTATAAGTCAC | alignment | plot | GSM278334-4059 | AT2G33120.2 cdna:known chromosome:TAIR10:2:14043459:14045543:-1 gene:AT2G33120 transcript:AT2G33120.2 | 2 | 1018 | 0.02 | 2 | 0.666667 | 3 | 5' TATGAGAGTATTATAAGTCAC 3' |||||||o||| | ||o|||| 3' TATCATACTCTTATA-TCTTTAGTGTTTTTGT 5' |
56 | Arabidopsis thaliana | ACCGGTATCTGGTCCGGTTTC | alignment | plot | GSM278334-4059 | AT3G02560.2 cdna:known chromosome:TAIR10:3:541800:543385:1 gene:AT3G02560 transcript:AT3G02560.2 | 2 | 542 | 0.01 | 4 | 2 | 4 | 5' ACCGGTATCTGGTCCGGTTTC 3' | ||||||||||| | |||| 3' GTTCT-GCCATAGACCAAGAGAAAGGATGTTA 5' |
57 | Arabidopsis thaliana | TCCTCCACCACCGAGAGCATT | alignment | plot | GSM278334-4059 | AT2G32690.1 cdna:known chromosome:TAIR10:2:13863717:13864596:-1 gene:AT2G32690 transcript:AT2G32690.1 | 2 | 615 | 0.03 | 7 | 1.75 | 3.5 | 5' TCCTCCACCACCGAGAGCATT 3' |||||||||||| |o || || 3' CTGGAGGAGGTGGTGG-TTACGGAAATGGTTT 5' |
58 | Arabidopsis thaliana | TGATTGAGCCGTGTCAATATC | alignment | plot | GSM278334-4059 | AT2G45160.1 cdna:known chromosome:TAIR10:2:18617862:18620150:-1 gene:AT2G45160 transcript:AT2G45160.1 | 1 | 1014 | 0 | 3 | 3 | 1 | 5' TGATTGAGCCGTGTCAATATC 3' |||||||||||o|o||||||| 3' TACCACTAACTCGGCGCGGTTATAGGGAACGC 5' |
59 | Arabidopsis thaliana | AACCGGATTCTGGTTTGGTTA | alignment | plot | GSM278334-4059 | AT5G01530.1 cdna:known chromosome:TAIR10:5:208937:210445:1 gene:AT5G01530 transcript:AT5G01530.1 | 2 | 444 | 0 | 2 | 2 | 3.5 | 5' AACCGGATTCTGGTTTGGTTA 3' | ||o|||||||||o|o|| | 3' AGAATCGGTCTAAGACCAGATCACTTAGCTAT 5' |
60 | Arabidopsis thaliana | TCCTGAGTTTCATTGGCTCT | alignment | plot | GSM278334-4059 | AT3G59540.1 cdna:known chromosome:TAIR10:3:21995677:21996836:-1 gene:AT3G59540 transcript:AT3G59540.1 | 2 | 315 | 0.05 | 15 | 15 | 3.5 | 5' TCCTGAGTTTCATTGGCTCT 3' |||||| |||||| o| ||| 3' ATCTAGGACT-AAAGTATTCTAGAAGTTTCCA 5' |
61 | Arabidopsis thaliana | AACGGCGTGAGTGCCGTAGA | alignment | plot | GSM278334-4059 | AT1G76080.1 cdna:known chromosome:TAIR10:1:28547786:28549419:-1 gene:AT1G76080 transcript:AT1G76080.1 | 2 | 957 | 0.01 | 3 | 3 | 3.5 | 5' AACGGCGTGAGTGCCGTAGA 3' ||| || |||||o||| ||| 3' GTGCTTG-CGGACTCATGGCTTCTTAGAGAGG 5' |
62 | Arabidopsis thaliana | TCATCATCATCATCATCTTCT | alignment | plot | GSM278334-4059 | AT1G13220.2 cdna:known chromosome:TAIR10:1:4515699:4520284:1 gene:AT1G13220 transcript:AT1G13220.2 | 1 | 3302 | 0.05 | 2 | 2 | 2 | 5' TCATCATCATCATCATCTTCT 3' ||||||||||| ||||| ||| 3' GGGTAGTAGTAGTAGCAGTAGTAGAACTAAAA 5' |
63 | Arabidopsis thaliana | TCTTCTTCGTCGCCATTACT | alignment | plot | GSM278334-4059 | AT4G27310.1 cdna:known chromosome:TAIR10:4:13675638:13676910:1 gene:AT4G27310 transcript:AT4G27310.1 | 1 | 586 | 0.02 | 2 | 2 | 4 | 5' TCTTCTTCGTCGCCATTACT 3' |||||||| ||o |||o| | 3' GAGTAGAAGAAGGAGTAGTAGT-AGCATTCTG 5' |
64 | Arabidopsis thaliana | TGAGAAGAAGAAGAAGAAAA | alignment | plot | GSM278334-4059 | AT1G31335.1 cdna:known chromosome:TAIR10:1:11216914:11217393:-1 gene:AT1G31335 transcript:AT1G31335.1 | 0 | 110 | 0.04 | 2 | 2 | 2.5 | 5' TGAGAAGAAGA-AGAAGAAAA 3' o|||||| ||| ||||||||| 3' TTAGGCTCTTCATCTGTCTTCTTTTAATCTCC 5' |
65 | Arabidopsis thaliana | TCTATCTTCTTCGTCTTCGAT | alignment | plot | GSM278334-4059 | AT1G77122.1 cdna:known chromosome:TAIR10:1:28977357:28978743:-1 gene:AT1G77122 transcript:AT1G77122.1 | 2 | 321 | 0.01 | 4 | 0.00569801 | 2.5 | 5' TCTATCTTCTTCGTCTTCGAT 3' ||| |||||||| |||||o|| 3' AAGAAGA-AGAAGAAGAAGAAGTTACTAGTTG 5' |
66 | Arabidopsis thaliana | CCAGCTTTCCATTGCACTAA | alignment | plot | GSM278334-4059 | AT4G25740.2 cdna:known chromosome:TAIR10:4:13107264:13108827:-1 gene:AT4G25740 transcript:AT4G25740.2 | 2 | 596 | 0.05 | 2 | 1 | 3.5 | 5' CCAGCTTTCCATTGCACTAA 3' |||| ||| ||||o||| || 3' CTAAGGTCTAAACGTAATGTGTTTGTCTTGAT 5' |
67 | Arabidopsis thaliana | TCATCATCATCATCATCTTCT | alignment | plot | GSM278334-4059 | AT5G08600.1 cdna:known chromosome:TAIR10:5:2786267:2789871:1 gene:AT5G08600 transcript:AT5G08600.1 | 2 | 330 | 0.01 | 4 | 0.0113636 | 0 | 5' TCATCATCATCATCATCTTCT 3' ||||||||||||||||||||| 3' TAGTAGTAGTAGTAGTAGTAGAAGACTGAGGT 5' |
68 | Arabidopsis thaliana | TGTACATCACTTTTAGTGTA | alignment | plot | GSM278334-4059 | AT2G32990.1 cdna:known chromosome:TAIR10:2:14003250:14006017:1 gene:AT2G32990 transcript:AT2G32990.1 | 1 | 1816 | 0.05 | 2 | 2 | 4 | 5' TGTACATCACTTTTAGTGTA 3' |o|||| ||||||| o| || 3' TAAAATATGT-GTGAAAAATAAATTTTTGTTT 5' |
69 | Arabidopsis thaliana | AGAAGAAGAGGCGTCCTCCT | alignment | plot | GSM278334-4059 | AT4G24100.1 cdna:known chromosome:TAIR10:4:12515076:12519841:1 gene:AT4G24100 transcript:AT4G24100.1 | 0 | 2677 | 0 | 2 | 2 | 3.5 | 5' AGAAGAAGAGGCGTCCTCCT 3' |o|||||||| | | ||||| 3' TGGGTTTTCTTCTC-GAAAGAGGAAATAGAGT 5' |
70 | Arabidopsis thaliana | AGCCATCATCATGTTCCTGT | alignment | plot | GSM278334-4059 | AT2G38690.1 cdna:known chromosome:TAIR10:2:16176631:16177754:-1 gene:AT2G38690 transcript:AT2G38690.1 | 1 | 445 | 0.02 | 3 | 3 | 4 | 5' AGCCATCATCAT-GTTCCTGT 3' |o||||| |||| ||o |||| 3' ACAATTGGTAGAAGTAGCAGAGACATAGTCAT 5' |
71 | Arabidopsis thaliana | CACCATCTTCGTTGCTCTCT | alignment | plot | GSM278334-4059 | AT2G38690.1 cdna:known chromosome:TAIR10:2:16176631:16177754:-1 gene:AT2G38690 transcript:AT2G38690.1 | 1 | 445 | 0 | 3 | 3 | 3 | 5' CACCATCTTCGTTGCTCTCT 3' |||||||||o|o| ||||| 3' ACAATTGGTAGAAGTAGC-AGAGACATAGTCA 5' |
72 | Arabidopsis thaliana | CTATCATCATCATCCTCGTAA | alignment | plot | GSM278334-4059 | AT2G30350.2 cdna:known chromosome:TAIR10:2:12934150:12935773:-1 gene:AT2G30350 transcript:AT2G30350.2 | 2 | 627 | 0.02 | 4 | 0.0113636 | 3 | 5' CTATCATCATCATCCTCGTAA 3' | ||||||||||||||| | | 3' AGTAG-TAGTAGTAGTAGGAGAAGTAATTGGA 5' |
73 | Arabidopsis thaliana | TAGTCCGGTTTTGGATACGTG | alignment | plot | GSM278334-4059 | AT1G42970.1 cdna:known chromosome:TAIR10:1:16127381:16129843:1 gene:AT1G42970 transcript:AT1G42970.1 | 2 | 1585 | 0.04 | 10 | 10 | 4 | 5' TAGTCCGGTTTTGGATACGTG 3' |||| ||o|||o|o||| ||o 3' ACGTATCATGCTAAAGCTTATTCATTGAGTAC 5' |
74 | Arabidopsis thaliana | ATTTGCGAGGGAATTGCAAGA | alignment | plot | GSM278334-4059 | AT3G63340.2 cdna:known chromosome:TAIR10:3:23391628:23398377:-1 gene:AT3G63340 transcript:AT3G63340.2 | 2 | 3749 | 0.04 | 4 | 2 | 4 | 5' ATTTGCGAGGGAATTGCAAGA 3' ||||o|o|||o|| o||||| 3' GAAATAAATGTTCCTTTTCTGTTCTCCGATAA 5' |
75 | Arabidopsis thaliana | ACCCAATCTCTACTTCAGTCT | alignment | plot | GSM278334-4059 | AT2G11890.1 cdna:known chromosome:TAIR10:2:4802793:4804358:1 gene:AT2G11890 transcript:AT2G11890.1 | 2 | 486 | 0.05 | 2 | 1 | 3.5 | 5' ACCCAATCTCTACTTCAGTCT 3' || |||||||o ||||| ||| 3' GTTATGAGTTAGAGGAGAAGT-AGAAGGAGGT 5' |
76 | Arabidopsis thaliana | CTATCATCATCATCCTCGTAA | alignment | plot | GSM278334-4059 | AT1G49900.1 cdna:known chromosome:TAIR10:1:18473908:18477643:-1 gene:AT1G49900 transcript:AT1G49900.1 | 2 | 1931 | 0 | 4 | 0.0113636 | 2.5 | 5' CTATCATCATCATCCTCGTAA 3' | |||||||||||| ||o||| 3' AGTAG-TAGTAGTAGTAGTAGTATTATTCTTG 5' |
77 | Arabidopsis thaliana | AAGCTCAGGAGGGATAGCGCC | alignment | plot | GSM278334-4059 | AT5G57735.1 cdna:known chromosome:TAIR10:5:23394005:23394500:1 gene:AT5G57735 transcript:AT5G57735.1 | 0 | 429 | 0 | 3 | 3 | 3 | 5' AAGCTCAGGAGGGATAGCGCC 3' ||||||||||||o|||| o | 3' GTATTTCGAGTCCTCCTTATCTTTGTTGTTTG 5' |
78 | Arabidopsis thaliana | CTATCATCATCATCCTCGTAA | alignment | plot | GSM278334-4059 | AT1G49900.1 cdna:known chromosome:TAIR10:1:18473908:18477643:-1 gene:AT1G49900 transcript:AT1G49900.1 | 2 | 1964 | 0.03 | 4 | 0.0113636 | 2.5 | 5' CTATCATCATCATCCTCGTAA 3' | |||||||||||||||o| | 3' AGTAG-TAGTAGTAGTAGGAGTAGTGGTAGTA 5' |
79 | Arabidopsis thaliana | TTTGGATTGAAGGGAGCTCTT | alignment | plot | GSM278334-4059 | AT2G21600.1 cdna:known chromosome:TAIR10:2:9242801:9244833:1 gene:AT2G21600 transcript:AT2G21600.1 | 1 | 914 | 0.03 | 5 | 5 | 4 | 5' TTTGGATTGAAGGGAGCTCTT 3' o|||||||o||||||o|| o 3' CCATGAACCTAATTTCCCTTGATTGTTTCTTG 5' |
80 | Arabidopsis thaliana | CATCCAAGGTGTTTGTAGAAA | alignment | plot | GSM278334-4059 | AT1G09750.1 cdna:known chromosome:TAIR10:1:3157501:3159148:1 gene:AT1G09750 transcript:AT1G09750.1 | 0 | 1494 | 0.02 | 8 | 8 | 4 | 5' CATCCAAGGTGTTTGTAGAAA 3' ||| |||o||o| ||||||| 3' GCAAGTATGTTTCATATACATCTTCCAGTTCG 5' |
81 | Arabidopsis thaliana | TGCAGCTGCAGCATCATCAA | alignment | plot | GSM278334-4059 | AT2G26500.2 cdna:known chromosome:TAIR10:2:11270218:11270874:1 gene:AT2G26500 transcript:AT2G26500.2 | 1 | 370 | 0.04 | 18 | 9 | 3.5 | 5' TGCAGCTGCAGCATCATCAA 3' | ||o|||||o||o|| ||| 3' GCTTAGGTTGACGTTGTGGTTGTTCTCATTCT 5' |
82 | Arabidopsis thaliana | AAGACGGCTGGGAAATGGCA | alignment | plot | GSM278334-4059 | AT4G25740.1 cdna:known chromosome:TAIR10:4:13107250:13108827:-1 gene:AT4G25740 transcript:AT4G25740.1 | 2 | 515 | 0.02 | 2 | 1 | 3.5 | 5' AAGACGGCTGGGAAATGGCA 3' |||||||||||o|| oo|| 3' ACCTTTCTGCCGACCTTTAGTCGACCTCGAGG 5' |
83 | Arabidopsis thaliana | TCATCATCATCATCATCTTCT | alignment | plot | GSM278334-4059 | AT3G29000.1 cdna:known chromosome:TAIR10:3:11005779:11006414:1 gene:AT3G29000 transcript:AT3G29000.1 | 2 | 215 | 0.03 | 4 | 0.0113636 | 1 | 5' TCATCATCATCATCATCTTCT 3' ||||||||||||||||| ||| 3' TAGTAGTAGTAGTAGTAGTAGTAGAAGAACAA 5' |
84 | Arabidopsis thaliana | TGATTGAGCCGTGTCAATATC | alignment | plot | GSM278334-4059 | AT4G00150.1 cdna:known chromosome:TAIR10:4:57199:59286:-1 gene:AT4G00150 transcript:AT4G00150.1 | 0 | 867 | 0 | 3 | 3 | 1 | 5' TGATTGAGCCGTGTCAATATC 3' |||||||||||o|o||||||| 3' GACAACTAACTCGGCGCGGTTATAGGGGACTC 5' |
85 | Arabidopsis thaliana | TCATCATCATCATCATCTTCT | alignment | plot | GSM278334-4059 | AT3G29000.1 cdna:known chromosome:TAIR10:3:11005779:11006414:1 gene:AT3G29000 transcript:AT3G29000.1 | 2 | 212 | 0 | 4 | 0.0113636 | 0 | 5' TCATCATCATCATCATCTTCT 3' ||||||||||||||||||||| 3' TAGTAGTAGTAGTAGTAGTAGAAGAACAAACC 5' |
86 | Arabidopsis thaliana | TCCTCCACCACCGAGAGCAT | alignment | plot | GSM278334-4059 | AT2G32690.3 cdna:known chromosome:TAIR10:2:13863717:13864596:-1 gene:AT2G32690 transcript:AT2G32690.3 | 2 | 591 | 0.04 | 7 | 1.75 | 3.5 | 5' TCCTCCACCACCGAGAGCAT 3' |||||||||||| |o || | 3' CTGGAGGAGGTGGTGG-TTACGGAAATGGTTT 5' |
87 | Arabidopsis thaliana | GTATAGCATAATGAGCAATCA | alignment | plot | GSM278334-4059 | AT3G12120.2 cdna:known chromosome:TAIR10:3:3860445:3862880:-1 gene:AT3G12120 transcript:AT3G12120.2 | 2 | 1412 | 0.04 | 6 | 3 | 3 | 5' GTATAGCATAATGAGCAATCA 3' oo|||o||||||||||| o|| 3' AGGGTGTATTGTATTACTCGTCGGTTTTACAG 5' |
88 | Arabidopsis thaliana | GATCATGCTATCTCTTTGGA | alignment | plot | GSM278334-4059 | AT2G17340.1 cdna:known chromosome:TAIR10:2:7541406:7544128:-1 gene:AT2G17340 transcript:AT2G17340.1 | 1 | 576 | 0.01 | 2 | 2 | 4 | 5' GATCATGCTATCTCTTTGGA 3' || |||o|o|||o||| o|| 3' CTTTCT-GTATGGTAGGGAACTCTTTTGAAGT 5' |
89 | Arabidopsis thaliana | TGGTGTCGATCGACACCAAGG | alignment | plot | GSM278334-4059 | AT3G11830.1 cdna:known chromosome:TAIR10:3:3732661:3736374:1 gene:AT3G11830 transcript:AT3G11830.1 | 2 | 1641 | 0.03 | 2 | 1 | 4 | 5' TGGTGTCGATCGACACCAAGG 3' o||| ||| ||||||| |||o 3' AAGTGCCAAAGC-AGCTGTGATTCTTACTCCG 5' |
90 | Arabidopsis thaliana | TGACAGAAGAGAGTTAGCAC | alignment | plot | GSM278334-4059 | AT2G33810.1 cdna:known chromosome:TAIR10:2:14305001:14306072:1 gene:AT2G33810 transcript:AT2G33810.1 | 0 | 797 | 0 | 6 | 6 | 2 | 5' TGACAGAAGAGAGTTAGCAC 3' |||||||||||||| |||| 3' TCTGACTGTCTTCTCTCATTCGTTTCGGACAA 5' |
91 | Arabidopsis thaliana | TCCTTGAAAGGTTCATTATC | alignment | plot | GSM278334-4059 | AT5G37352.1 cdna:pseudogene chromosome:TAIR10:5:14796126:14797001:1 gene:AT5G37352 transcript:AT5G37352.1 | 1 | 585 | 0.03 | 3 | 1.5 | 4 | 5' TCCTTGAAAGGTTCATTATC 3' ||| || ||| |o|||o||| 3' GGTAAGGTACATTCGAGGTAGTAGGTGGTGTA 5' |
92 | Arabidopsis thaliana | TCATGGTCAGATCCGTCATCC | alignment | plot | GSM278334-4059 | AT5G37352.1 cdna:pseudogene chromosome:TAIR10:5:14796126:14797001:1 gene:AT5G37352 transcript:AT5G37352.1 | 1 | 585 | 0.01 | 3 | 1.5 | 4 | 5' TCATGGTCAGATCCGTCATCC 3' o||| || || |||o|||||| 3' GTAAGGTA-CATTCGAGGTAGTAGGTGGTGTA 5' |
93 | Arabidopsis thaliana | AGTGGCTGCAGCTGCAGCGAC | alignment | plot | GSM278334-4059 | AT5G20020.1 cdna:known chromosome:TAIR10:5:6762724:6764671:1 gene:AT5G20020 transcript:AT5G20020.1 | 2 | 720 | 0.02 | 2 | 2 | 3.5 | 5' AGTGGCTGCAGCTGCAGCGAC 3' || ||||| |||||||||o | 3' CCCCTCTCCGAC-TCGACGTCGTCGACGTTCT 5' |
94 | Arabidopsis thaliana | AGAATCTTGATGATGCTGCAG | alignment | plot | GSM278334-4059 | AT3G62070.1 cdna:known chromosome:TAIR10:3:22983138:22984513:-1 gene:AT3G62070 transcript:AT3G62070.1 | 0 | 706 | 0.01 | 2 | 2 | 4 | 5' AGAATCTTGATGATGCTGCAG 3' |||| |||||o| || o|||| 3' TGATTCTTCGAACTGC-ACAGCGTCTTCGATT 5' |
95 | Arabidopsis thaliana | ACTGTATATATGTAAGTGACA | alignment | plot | GSM278334-4059 | AT2G17230.1 cdna:known chromosome:TAIR10:2:7494536:7496016:-1 gene:AT2G17230 transcript:AT2G17230.1 | 1 | 1239 | 0.04 | 3 | 3 | 4 | 5' ACTGTATATATGTAAGTGA-CA 3' ||| |||||||o|||| o| || 3' AATTTGAAATATATATATTCTTTAGTATTTCA 5' |
96 | Arabidopsis thaliana | TTCTTGCATATGTTCTTTATC | alignment | plot | GSM278334-4059 | AT1G18450.1 cdna:known chromosome:TAIR10:1:6348107:6351975:1 gene:AT1G18450 transcript:AT1G18450.1 | 1 | 1588 | 0 | 3 | 3 | 3.5 | 5' TTCTTGCATATGTTCTTTATC 3' ||||| ||o||||| ||||| 3' TTTGAAGAAGGTGTACAA-AAATACAAAAATT 5' |
97 | Arabidopsis thaliana | TGAGAAGAAGAAGAAGAAAA | alignment | plot | GSM278334-4059 | AT3G15140.1 cdna:known chromosome:TAIR10:3:5099532:5101781:-1 gene:AT3G15140 transcript:AT3G15140.1 | 2 | 234 | 0.03 | 6 | 0.0093439 | 1.5 | 5' TGAGAAGAAGAAGAAGAAAA 3' o|||||||||||||||||| 3' TCTTCTTCTTCTTCTTCTTCTTTTCAGTCTCC 5' |
98 | Arabidopsis thaliana | TGCCTGGCTCCCTGTATGCC | alignment | plot | GSM278334-4059 | AT1G77850.1 cdna:known chromosome:TAIR10:1:29272313:29275419:1 gene:AT1G77850 transcript:AT1G77850.1 | 0 | 1420 | 0 | 16 | 16 | 0.5 | 5' TGCCTGGCTCCCTGTATGCC 3' ||||||||||||||o||||| 3' TATAACGGACCGAGGGACGTACGGTCGTCCTT 5' |
99 | Arabidopsis thaliana | TACCAACCTTTCATCGTTCCC | alignment | plot | GSM278334-4059 | AT3G60245.1 cdna:known chromosome:TAIR10:3:22268746:22270006:1 gene:AT3G60245 transcript:AT3G60245.1 | 2 | 77 | 0.05 | 2 | 2 | 4 | 5' TACCAACCTTTCATCGTTCCC 3' | |||||| ||| |||||| | 3' TGCTAAGGTTGG-AAGAAGCAAGAGAAGCGGT 5' |
100 | Arabidopsis thaliana | GGAATCTTGATGATGCTGCAT | alignment | plot | GSM278334-4059 | AT3G54990.1 cdna:known chromosome:TAIR10:3:20373718:20376522:-1 gene:AT3G54990 transcript:AT3G54990.1 | 0 | 976 | 0 | 4 | 4 | 1.5 | 5' GGAATCTTGATGATGCTGCAT 3' ||||||o||||||||||||| 3' TTTCCCTTAGGACTACTACGACGTTGACAGAA 5' |
101 | Arabidopsis thaliana | ACTCGGCCAGGTAGTCGAGTG | alignment | plot | GSM278334-4059 | AT1G04270.1 cdna:known chromosome:TAIR10:1:1141604:1143053:-1 gene:AT1G04270 transcript:AT1G04270.1 | 2 | 460 | 0 | 2 | 1 | 3.5 | 5' ACTCGGCCAGGTAGTCGAGTG 3' ||||o|||||||||| || oo 3' CTCTTGAGTCGGTCCATCA-CTGGTTAGTAGA 5' |
102 | Arabidopsis thaliana | TGAGAAGAAGAAGAAGAAAA | alignment | plot | GSM278334-4059 | AT3G48160.2 cdna:known chromosome:TAIR10:3:17783331:17786099:1 gene:AT3G48160 transcript:AT3G48160.2 | 2 | 1540 | 0.03 | 6 | 0.0093439 | 1.5 | 5' TGAGAAGAAGAAGAAGAAAA 3' o|||||||||||||||||| 3' TCTTCTTCTTCTTCTTCTTCTTTTTCTTCTAG 5' |
103 | Arabidopsis thaliana | TTAGCTGAAGAAGCAGAGGAG | alignment | plot | GSM278334-4059 | AT3G22220.1 cdna:known chromosome:TAIR10:3:7839616:7842874:-1 gene:AT3G22220 transcript:AT3G22220.1 | 0 | 2715 | 0.03 | 2 | 2 | 4 | 5' TTAGCTGAAGAAGCAGAGGAG 3' | || |o|||||| |||o||| 3' AATGACTC-ATTTCTTCTTCTTCTCCTTCTTC 5' |
104 | Arabidopsis thaliana | TGAGAAGAAGAAGAAGAAAA | alignment | plot | GSM278334-4059 | AT5G64816.2 cdna:known chromosome:TAIR10:5:25913000:25914027:1 gene:AT5G64816 transcript:AT5G64816.2 | 1 | 492 | 0 | 4 | 2 | 1.5 | 5' TGAGAAGAAGAAGAAGAAAA 3' o||||||||||||||||| | 3' TATCGCTCTTCTTCTTCTTCTTCTTCTCTCGA 5' |
105 | Arabidopsis thaliana | CTATCATCATCATCCTCGTAA | alignment | plot | GSM278334-4059 | AT5G40520.2 cdna:known chromosome:TAIR10:5:16231254:16234316:-1 gene:AT5G40520 transcript:AT5G40520.2 | 2 | 1338 | 0.05 | 4 | 0.0113636 | 3.5 | 5' CTATCATCATCATCCTCGTAA 3' | |||||||||||| ||o| | 3' AGTAG-TAGTAGTAGTAGTAGTAGTAATAGTA 5' |
106 | Arabidopsis thaliana | TGAATCGATTTGGCCGGGTC | alignment | plot | GSM278334-4059 | AT3G60750.1 cdna:known chromosome:TAIR10:3:22453719:22457152:1 gene:AT3G60750 transcript:AT3G60750.1 | 2 | 2498 | 0.02 | 3 | 1.5 | 4 | 5' TGAATCGATTTGGCCGGGTC 3' |||| ||o||||||| o|| 3' ATCTTCTTA-CTGAACCGGCGTAGTTGTTGTC 5' |
107 | Arabidopsis thaliana | AGCCATCATCATGTTCCTGT | alignment | plot | GSM278334-4059 | AT2G24500.1 cdna:known chromosome:TAIR10:2:10401035:10402934:-1 gene:AT2G24500 transcript:AT2G24500.1 | 1 | 1167 | 0.02 | 2 | 2 | 4 | 5' AGCCATCATCATGTTCCTGT 3' | |||||||| ||| |||| 3' GATCTGGGTAGTAGAACATGGACCTCCAATCT 5' |
108 | Arabidopsis thaliana | TCATCTTCATCATCATCGTCA | alignment | plot | GSM278334-4059 | AT4G12100.1 cdna:known chromosome:TAIR10:4:7246422:7248127:-1 gene:AT4G12100 transcript:AT4G12100.1 | 0 | 1295 | 0.05 | 2 | 2 | 2 | 5' TCATCTTCATCATCATCGTCA 3' | |||o|||||||||||o||| 3' TCAAATTAGGAGTAGTAGTAGTAGTAGATAGG 5' |
109 | Arabidopsis thaliana | TTTTGGAAATTTGTCCTTACG | alignment | plot | GSM278334-4059 | AT3G09360.1 cdna:known chromosome:TAIR10:3:2873449:2878591:1 gene:AT3G09360 transcript:AT3G09360.1 | 2 | 1953 | 0.04 | 2 | 2 | 3.5 | 5' TTTTGGAAATTTGTCCTTACG 3' |||||o||||o|||| |o| | 3' CGGCAAAACTTTTAGACAGAAGTACAGCATAC 5' |
110 | Arabidopsis thaliana | TGAGAAGAAGAAGAAGAAAA | alignment | plot | GSM278334-4059 | AT1G03190.1 cdna:known chromosome:TAIR10:1:775527:780027:1 gene:AT1G03190 transcript:AT1G03190.1 | 2 | 35 | 0.04 | 6 | 0.0093439 | 1.5 | 5' TGAGAAGAAGAAGAAGAAAA 3' o|||||||||||||||||| 3' TCTTCTTCTTCTTCTTCTTCTTTTAAAACGCA 5' |
111 | Arabidopsis thaliana | TCCTCTGTATCTTCGTTGTCA | alignment | plot | GSM278334-4059 | AT4G10710.1 cdna:known chromosome:TAIR10:4:6601989:6606354:-1 gene:AT4G10710 transcript:AT4G10710.1 | 2 | 3287 | 0.03 | 2 | 2 | 3.5 | 5' TCCTCTGTATCTTCGTTGTCA 3' |||||| | ||o|||o|o||| 3' GAGAAGGAGAGA-AGGAGCGATAGTCTGAGTT 5' |
112 | Arabidopsis thaliana | TCATCATCATCATCATCTTCT | alignment | plot | GSM278334-4059 | AT1G66620.1 cdna:known chromosome:TAIR10:1:24852806:24854153:-1 gene:AT1G66620 transcript:AT1G66620.1 | 2 | 996 | 0.03 | 4 | 0.0113636 | 1 | 5' TCATCATCATCATCATCTTCT 3' |||||||||||||| |||||| 3' TAGTAGTAGTAGTAGTAGAAGAAGAAGAAGTC 5' |
113 | Arabidopsis thaliana | TCATCATCATCATCATCTTCT | alignment | plot | GSM278334-4059 | AT1G66620.1 cdna:known chromosome:TAIR10:1:24852806:24854153:-1 gene:AT1G66620 transcript:AT1G66620.1 | 2 | 999 | 0 | 4 | 0.0113636 | 0 | 5' TCATCATCATCATCATCTTCT 3' ||||||||||||||||||||| 3' TAGTAGTAGTAGTAGTAGTAGAAGAAGAAGAA 5' |
114 | Arabidopsis thaliana | TCATCATCATCATCATCTTCT | alignment | plot | GSM278334-4059 | AT1G66620.1 cdna:known chromosome:TAIR10:1:24852806:24854153:-1 gene:AT1G66620 transcript:AT1G66620.1 | 2 | 1002 | 0.01 | 4 | 0.0113636 | 1 | 5' TCATCATCATCATCATCTTCT 3' ||||||||||||||||| ||| 3' TAGTAGTAGTAGTAGTAGTAGTAGAAGAAGAA 5' |
115 | Arabidopsis thaliana | GACGAAGAAGATGGTGATGTGAT | alignment | plot | GSM278334-4059 | AT5G66800.1 cdna:known chromosome:TAIR10:5:26671423:26672514:1 gene:AT5G66800 transcript:AT5G66800.1 | 2 | 375 | 0.03 | 6 | 0.0093439 | 4 | 5' GACGAAGAAGATGGTGATGTGAT 3' || ||||||||||o||| o ||| 3' TCTTCTTCTTCTTCTACTACTCTTCTAACCAC 5' |
116 | Arabidopsis thaliana | CCTTTGGCACCTTTGTTGGC | alignment | plot | GSM278334-4059 | AT5G60390.3 cdna:known chromosome:TAIR10:5:24288664:24290856:1 gene:AT5G60390 transcript:AT5G60390.3 | 2 | 1399 | 0.04 | 7 | 2.33333 | 4 | 5' CCTTTGGCACCTTTGTTGGC 3' | |||||||||o|| || o| 3' AGTAGTAAACCGTGGGAAGAAGTGACGTCGGA 5' |
117 | Arabidopsis thaliana | TAACTAAACATTGGTGTAGTA | alignment | plot | GSM278334-4059 | AT2G31585.1 cdna:known chromosome:TAIR10:2:13446002:13446729:1 gene:AT2G31585 transcript:AT2G31585.1 | 2 | 647 | 0.03 | 2 | 0.666667 | 3.5 | 5' TAACTAAACATTGGTGTAGTA 3' o|||||||||| o|||||o | 3' TTAAGTTGATTTGTATTCACATTCTGAAAAGT 5' |
118 | Arabidopsis thaliana | GATGATGATGATACTCAGGA | alignment | plot | GSM278334-4059 | AT2G36890.1 cdna:known chromosome:TAIR10:2:15485779:15487277:1 gene:AT2G36890 transcript:AT2G36890.1 | 0 | 772 | 0.01 | 2 | 2 | 3 | 5' GATGATGATGATACTCAGGA 3' |||||||||||| ||| || 3' ACTACTACTACTACTAGTAGTACTAGTGCTAC 5' |
119 | Arabidopsis thaliana | GAGAAGATGAAGCTGTTCTG | alignment | plot | GSM278334-4059 | AT2G32500.1 cdna:known chromosome:TAIR10:2:13794426:13797227:-1 gene:AT2G32500 transcript:AT2G32500.1 | 1 | 899 | 0.03 | 2 | 2 | 4 | 5' GAGAAGATGAAGCTGTTCTG 3' ||||| |||||| ||||| 3' GTGACTCTT-TACTTCTCGAAGACTGAAAAGA 5' |
120 | Arabidopsis thaliana | CCTCGTGGTCGAGTGATGTG | alignment | plot | GSM278334-4059 | AT5G63030.1 cdna:known chromosome:TAIR10:5:25286223:25287694:1 gene:AT5G63030 transcript:AT5G63030.1 | 1 | 72 | 0 | 2 | 2 | 4 | 5' CCTCGTGGTCGAGTGATGTG 3' |||| || |||||| |||| 3' TACAGGAG-ACGAGCTCAAAACACGGTTAGAA 5' |
121 | Arabidopsis thaliana | CTATCATCATCATCCTCGTAA | alignment | plot | GSM278334-4059 | AT3G14900.1 cdna:known chromosome:TAIR10:3:5013291:5015292:-1 gene:AT3G14900 transcript:AT3G14900.1 | 2 | 1349 | 0.01 | 4 | 0.0113636 | 3 | 5' CTATCATCATCATCCTCGTAA 3' | |||||||||||| |||| | 3' AGTAG-TAGTAGTAGTAGTAGCAGTAACAGTC 5' |
122 | Arabidopsis thaliana | TTCTTGCATATGTTCTTTATC | alignment | plot | GSM278334-4059 | AT3G25545.1 cdna:known chromosome:TAIR10:3:9276845:9278629:1 gene:AT3G25545 transcript:AT3G25545.1 | 1 | 774 | 0 | 2 | 2 | 3.5 | 5' TTCTTGCATATGTTCTTTATC 3' |||o| | ||||||||||| | 3' TTACAAGGA-GAATACAAGAAATCGACCGTGG 5' |
123 | Arabidopsis thaliana | TCTATCTTCTTCGTCTTCGAT | alignment | plot | GSM278334-4059 | AT5G63650.1 cdna:known chromosome:TAIR10:5:25481517:25483719:-1 gene:AT5G63650 transcript:AT5G63650.1 | 2 | 1202 | 0.04 | 4 | 0.00569801 | 3 | 5' TCTATCTTCTTCGTCTTCGAT 3' ||| |||||||| |||||o|o 3' AAGAAGA-AGAAGAAGAAGAAGTTGGAGCAGG 5' |
124 | Arabidopsis thaliana | ACCCAATCTCTACTTCAGTCT | alignment | plot | GSM278334-4059 | AT2G11890.2 cdna:known chromosome:TAIR10:2:4802783:4804375:1 gene:AT2G11890 transcript:AT2G11890.2 | 2 | 496 | 0.01 | 2 | 1 | 3.5 | 5' ACCCAATCTCTACTTCAGTCT 3' || |||||||o ||||| ||| 3' GTTATGAGTTAGAGGAGAAGT-AGAAGGAGGT 5' |
125 | Arabidopsis thaliana | CTTGTGGAGAGGAAGCAAGA | alignment | plot | GSM278334-4059 | AT3G07860.1 cdna:known chromosome:TAIR10:3:2507880:2509509:1 gene:AT3G07860 transcript:AT3G07860.1 | 2 | 492 | 0.02 | 2 | 2 | 2.5 | 5' CTTGTGGAGAGGAAGCAAGA 3' |||||||||||o| | |||| 3' TTCAGAACACCTCTCTTGCTTTCTCTGCTACG 5' |
126 | Arabidopsis thaliana | GGTCGAGTGAAGTGATCGAGT | alignment | plot | GSM278334-4059 | AT4G33010.2 cdna:known chromosome:TAIR10:4:15926670:15931332:-1 gene:AT4G33010 transcript:AT4G33010.2 | 2 | 3405 | 0.05 | 4 | 2 | 4 | 5' GGTCGAGTGAAGTGATCGAGT 3' o ||||o||||o|o|| |||| 3' TACATAAGCTTACTTTATTATCTCATTCTCTG 5' |
127 | Arabidopsis thaliana | TTCGCTTGCAGAGAGAAATCAC | alignment | plot | GSM278334-4059 | AT2G39675.1 cdna:known chromosome:TAIR10:2:16537288:16538277:-1 gene:AT2G39675 transcript:AT2G39675.1 | 0 | 379 | 0 | 15 | 15 | 1.5 | 5' TTCGCTTGCAGAGAGAAATCAC 3' |||||||| |||||o||||||| 3' AGATAAGCGAACATCTCTTTTTAGTGTTGTTT 5' |
128 | Arabidopsis thaliana | TTGGCATTCTGTCCACCTCC | alignment | plot | GSM278334-4059 | AT1G10200.1 cdna:known chromosome:TAIR10:1:3346390:3347885:-1 gene:AT1G10200 transcript:AT1G10200.1 | 2 | 661 | 0.03 | 2 | 2 | 3.5 | 5' TTGGCATTCTGTCCACCTCC 3' o|||||||| ||| ||||| 3' GAACCGCCGTAAGAGAGGAGGAGGAAGCTCGA 5' |
129 | Arabidopsis thaliana | TCATCATCATCATCATCTTCT | alignment | plot | GSM278334-4059 | AT5G08600.2 cdna:novel chromosome:TAIR10:5:2786187:2790241:1 gene:AT5G08600 transcript:AT5G08600.2 | 2 | 449 | 0 | 4 | 0.0113636 | 0 | 5' TCATCATCATCATCATCTTCT 3' ||||||||||||||||||||| 3' TAGTAGTAGTAGTAGTAGTAGAAGACTGAGGT 5' |
130 | Arabidopsis thaliana | TGACCTGCCAAAGGAGAGTTG | alignment | plot | GSM278334-4059 | AT1G19100.1 cdna:known chromosome:TAIR10:1:6594930:6601355:1 gene:AT1G19100 transcript:AT1G19100.1 | 2 | 2435 | 0.01 | 2 | 2 | 3.5 | 5' TGACCTGCCAAAGGAGAGTTG 3' o|||| ||||||oo||||| | 3' CTATGCTGGTCGGTTTTTTCTCA-CAAAAAAA 5' |
131 | Arabidopsis thaliana | ACTCATAAGATCGTGACACGT | alignment | plot | GSM278334-4059 | AT5G02960.1 cdna:known chromosome:TAIR10:5:693079:694515:-1 gene:AT5G02960 transcript:AT5G02960.1 | 2 | 654 | 0.02 | 2 | 2 | 3.5 | 5' ACTCATAAGATCGTGACACGT 3' ||||||||o|| ||o||||o 3' TTTTTGAGTATTTTA-CATTGTGTTTTAGTTC 5' |
132 | Arabidopsis thaliana | TAAAGTCAATAATACCTTGAAG | alignment | plot | GSM278335-4060 | AT3G09820.1 cdna:known chromosome:TAIR10:3:3011990:3014944:1 gene:AT3G09820 transcript:AT3G09820.1 | 0 | 1294 | 0 | 34 | 17 | 4 | 5' TAAAGTCAATAATACCTTGAAG 3' o| | ||||||||| |||o||| 3' TTGTGTGTGAGTTATTATCGAATTTCGGAGTT 5' |
133 | Arabidopsis thaliana | TGACAGAAGAAAGAGAGCAC | alignment | plot | GSM278335-4060 | AT4G19150.1 cdna:known chromosome:TAIR10:4:10471331:10472742:-1 gene:AT4G19150 transcript:AT4G19150.1 | 0 | 1018 | 0.04 | 11 | 11 | 3.5 | 5' TGACAGAAGAAAGAGAGCAC 3' | |||||| |||||o|||| 3' AGTAAATGTCTT-TTTCTTTCGTTATGTCTCT 5' |
134 | Arabidopsis thaliana | GGAAGAGGCAGTGCATGGGTA | alignment | plot | GSM278335-4060 | AT3G08580.2 cdna:known chromosome:TAIR10:3:2605442:2607787:-1 gene:AT3G08580 transcript:AT3G08580.2 | 2 | 1313 | 0.02 | 3 | 1.5 | 3 | 5' GGAAGAGGCAGTGCATGGGTA 3' ||||||o|||o||| |o||o| 3' TCCTCCTTCTTCGTTACGAATCCGTGGAGGAC 5' |
135 | Arabidopsis thaliana | CTGGGTTGTGATGTTCTGCA | alignment | plot | GSM278335-4060 | AT1G73600.1 cdna:known chromosome:TAIR10:1:27670626:27673572:1 gene:AT1G73600 transcript:AT1G73600.1 | 2 | 1725 | 0.01 | 3 | 1 | 2.5 | 5' CTGGGTTGTGATGTTCTGCA 3' ||||||| ||||| |||o|| 3' CCATGACCCAAAACTACTAGATGTATGTATGG 5' |
136 | Arabidopsis thaliana | AAGCACATCCTCTTGCTTCC | alignment | plot | GSM278335-4060 | AT1G48860.2 cdna:known chromosome:TAIR10:1:18068725:18071365:-1 gene:AT1G48860 transcript:AT1G48860.2 | 0 | 1766 | 0.01 | 22 | 11 | 3.5 | 5' AAGCACATCCTCTTGCTTCC 3' ||o||| | ||||||||| | 3' TTTGTTTGTG-ATGAGAACGAAAGATTATTAC 5' |
137 | Arabidopsis thaliana | TGACAGAAGAAAGAGAGCAC | alignment | plot | GSM278335-4060 | AT1G27360.3 cdna:known chromosome:TAIR10:1:9501777:9503869:1 gene:AT1G27360 transcript:AT1G27360.3 | 0 | 1250 | 0 | 17 | 4.25 | 1 | 5' TGACAGAAGAAAGAGAGCAC 3' |||||||||| ||||||||| 3' TCCAACTGTCTTCTCTCTCTCGTGCCACCTAT 5' |
138 | Arabidopsis thaliana | TTCGCTTGCAGAGAGAAATCAC | alignment | plot | GSM278335-4060 | AT2G27400.1 cdna:known chromosome:TAIR10:2:11721539:11722468:-1 gene:AT2G27400 transcript:AT2G27400.1 | 0 | 379 | 0 | 26 | 26 | 1.5 | 5' TTCGCTTGCAGAGAGAAATCAC 3' |||||||| |||||o||||||| 3' GAGTAAGCGAACATCTCTTTTTAGTGTTGTTT 5' |
139 | Arabidopsis thaliana | TTCCACAGCTTTCTTGAACTT | alignment | plot | GSM278335-4060 | AT5G61440.1 cdna:known chromosome:TAIR10:5:24707500:24708893:1 gene:AT5G61440 transcript:AT5G61440.1 | 2 | 719 | 0 | 2 | 2 | 2.5 | 5' TTCCACAGCTTTCTTGAACTT 3' |o| || |||||||||||||| 3' GAATAGGTTG-CGAAAGAACTTGAATAACTAT 5' |
140 | Arabidopsis thaliana | ACTCGACCAGGGGGTCGAGT | alignment | plot | GSM278335-4060 | AT5G11040.1 cdna:known chromosome:TAIR10:5:3495287:3500922:1 gene:AT5G11040 transcript:AT5G11040.1 | 2 | 1360 | 0.04 | 3 | 3 | 4 | 5' ACTCGACCAGGGGGTCGAGT 3' |||||| |||||o| |o| | 3' ACCCTGAGCTTGTCCCTCTGTT-ACCTTACTA 5' |
141 | Arabidopsis thaliana | TCTTCTTCGTCGCCATTACT | alignment | plot | GSM278335-4060 | AT1G02090.2 cdna:known chromosome:TAIR10:1:387278:389647:-1 gene:AT1G02090 transcript:AT1G02090.2 | 2 | 793 | 0.04 | 2 | 0.666667 | 2.5 | 5' TCTTCTTCGTCG-CCATTACT 3' |||||||||| | ||||o||| 3' GGGTAGAAGAAGCATCAGGTAGTGAGGTGAAC 5' |
142 | Arabidopsis thaliana | GCCGCCATATCTCTCCGCCGTC | alignment | plot | GSM278335-4060 | AT1G76730.1 cdna:known chromosome:TAIR10:1:28802925:28804784:-1 gene:AT1G76730 transcript:AT1G76730.1 | 2 | 293 | 0 | 4 | 4 | 4 | 5' GCCGCCATATCTCTCCGCCGTC 3' |||||||||| ||||o ||o| 3' TCAGAGGCGGTATAG-GAGGTAGCGGCGGCGC 5' |
143 | Arabidopsis thaliana | TTTGGATTGAAGGGAGCTCTA | alignment | plot | GSM278335-4060 | AT5G06100.3 cdna:known chromosome:TAIR10:5:1837907:1840417:1 gene:AT5G06100 transcript:AT5G06100.3 | 2 | 1260 | 0.01 | 4 | 1 | 2.5 | 5' TTTGGATTGAAGGGAGCTCTA 3' ||||| ||||||||||||o| 3' CTTATAACCTTACTTCCCTCGAGGTCGAAGTG 5' |
144 | Arabidopsis thaliana | ACTGTATATATGTAAGTGACA | alignment | plot | GSM278335-4060 | AT4G23895.2 cdna:known chromosome:TAIR10:4:12422105:12424363:1 gene:AT4G23895 transcript:AT4G23895.2 | 0 | 962 | 0.03 | 8 | 4 | 4 | 5' ACTGTATATATGTAAGTGACA 3' | |o||||o||o|||o||| | 3' TTCGTAATATATGTATATTTACTTTTGATAGG 5' |
145 | Arabidopsis thaliana | TTTCGTTGTCTGTTCGACCTT | alignment | plot | GSM278335-4060 | AT5G49330.1 cdna:known chromosome:TAIR10:5:19998952:20001378:-1 gene:AT5G49330 transcript:AT5G49330.1 | 0 | 386 | 0.01 | 25 | 25 | 3 | 5' TTTCGTTGTCTGTTCGACCTT 3' ||||||||||||||| ||| 3' AATTAAAGCAACAGACAAGAAGGACCATCTAC 5' |
146 | Arabidopsis thaliana | ATTGGTAGTGGATAAGGGGGC | alignment | plot | GSM278335-4060 | AT2G39810.1 cdna:known chromosome:TAIR10:2:16612800:16618057:1 gene:AT2G39810 transcript:AT2G39810.1 | 2 | 2271 | 0.01 | 3 | 3 | 3.5 | 5' ATTGGTAGTGGATAAGGGGGC 3' |||o||||||| |||||oo| 3' GCCTTAATCATCACCGTTTCCCTTGACTTCTT 5' |
147 | Arabidopsis thaliana | TTGCTCGACCCGGGGGTCGAGT | alignment | plot | GSM278335-4060 | AT5G31753.1 cdna:pseudogene chromosome:TAIR10:5:11696730:11697699:1 gene:AT5G31753 transcript:AT5G31753.1 | 1 | 243 | 0 | 5 | 1.66667 | 4 | 5' TTGCTCGACCCGGGGGTCGAGT 3' |o|||||||| o|||||||| 3' GGTGTATGAGCTGGGGGTCCAGCTCACTGAAA 5' |
148 | Arabidopsis thaliana | TCACTCGACCACGAGGTCGAGTGT | alignment | plot | GSM278335-4060 | AT5G31753.1 cdna:pseudogene chromosome:TAIR10:5:11696730:11697699:1 gene:AT5G31753 transcript:AT5G31753.1 | 1 | 243 | 0 | 5 | 1.66667 | 4 | 5' TCACTCGACCACGAGGTCGAGTGT 3' | |||||||| | |||||||||| 3' GTGTA-TGAGCTGGGGGTCCAGCTCACTGAAA 5' |
149 | Arabidopsis thaliana | TCCGGAGGGATTCCTTCCTT | alignment | plot | GSM278335-4060 | AT4G05320.5 cdna:known chromosome:TAIR10:4:2718170:2720133:1 gene:AT4G05320 transcript:AT4G05320.5 | 2 | 420 | 0.01 | 3 | 0.6 | 3 | 5' TCCGGAGGGATTCCTTCCTT 3' ||||||||o|| ||o|| || 3' GACCAGGCCTCCTTATGGGAGAAACAGAACCT 5' |
150 | Arabidopsis thaliana | TTAGATGACCATCAACAAACT | alignment | plot | GSM278335-4060 | AT1G02860.1 cdna:known chromosome:TAIR10:1:635144:637262:1 gene:AT1G02860 transcript:AT1G02860.1 | 2 | 269 | 0 | 17 | 8.5 | 1 | 5' TTAGATGACCATCAACAAACT 3' |||||||||||||||||||| 3' TTTAAATCTACTGGTAGTTGTTTGTTTAAGTC 5' |
151 | Arabidopsis thaliana | TCGGACCAGGCTTCATTCCCC | alignment | plot | GSM278335-4060 | AT1G52150.1 cdna:known chromosome:TAIR10:1:19409711:19414678:-1 gene:AT1G52150 transcript:AT1G52150.1 | 2 | 1279 | 0.01 | 22 | 7.33333 | 2.5 | 5' TCGGACCAGGCTTCATTCCCC 3' o|||||||||||||||||| 3' CTTAGGCCTGGTCCGAAGTAAGGTCCGTAGAC 5' |
152 | Arabidopsis thaliana | TTCCACAGCTTTCTTGAACTT | alignment | plot | GSM278335-4060 | AT5G27850.1 cdna:known chromosome:TAIR10:5:9873152:9874598:1 gene:AT5G27850 transcript:AT5G27850.1 | 2 | 542 | 0.03 | 32 | 32 | 3 | 5' TTCCAC-AGCTTTCTTGAACTT 3' |||| | ||||||||oo||||| 3' CGAAAGGAGATCGAAAGAGTTTGAAGGAAGGG 5' |
153 | Arabidopsis thaliana | CTTGTGGAGAGGAAGCAAGA | alignment | plot | GSM278335-4060 | AT4G16980.1 cdna:known chromosome:TAIR10:4:9556978:9557812:1 gene:AT4G16980 transcript:AT4G16980.1 | 2 | 125 | 0.01 | 3 | 3 | 2 | 5' CTTGTGGAGAGGAAGCAAGA 3' ||||||o||||o||| |||| 3' TTCCGAACACTTCTCTTTC-TTCTCCGGTACC 5' |
154 | Arabidopsis thaliana | TCCCAAATGTAGACAAAGCA | alignment | plot | GSM278335-4060 | AT1G62860.1 cdna:pseudogene chromosome:TAIR10:1:23274676:23277017:-1 gene:AT1G62860 transcript:AT1G62860.1 | 2 | 425 | 0 | 2 | 2 | 1 | 5' TCCCAAATGTAGACAAAGCA 3' | |||||||||||||||||| 3' TAGAACGGTTTACATCTGTTTCGTTTCCTGTT 5' |
155 | Arabidopsis thaliana | TCGACCTGGGGGTCGAGCGA | alignment | plot | GSM278335-4060 | AT1G15405.1 cdna:known chromosome:TAIR10:1:5297875:5298166:-1 gene:AT1G15405 transcript:AT1G15405.1 | 2 | 57 | 0.03 | 9 | 9 | 3.5 | 5' TCGACCTGGGGGTCGAGCGA 3' o|||||o| |||o||||| | 3' TCTAGGCTGGGCACCCGGCTCGGTCACAAGGT 5' |
156 | Arabidopsis thaliana | GAGGAGGAGGAGCACCACCGT | alignment | plot | GSM278335-4060 | AT1G13930.1 cdna:known chromosome:TAIR10:1:4761042:4761725:1 gene:AT1G13930 transcript:AT1G13930.1 | 2 | 392 | 0 | 16 | 5.33333 | 3 | 5' GAGGAGGAGGAGCACCACCGT 3' ||||||||||| ||||| |oo 3' CAGCCTCCTCCTCCTGGTGGTCGTGGCCACCT 5' |
157 | Arabidopsis thaliana | TATCTCTGCAACTGCAACTGC | alignment | plot | GSM278335-4060 | AT4G30990.1 cdna:novel chromosome:TAIR10:4:15084098:15097920:1 gene:AT4G30990 transcript:AT4G30990.1 | 1 | 6370 | 0 | 7 | 3.5 | 3.5 | 5' TATCTCTGCAACTGCAA-CTGC 3' |||||||| ||||o||| || | 3' GTATATAGAGACCTTGATGTTCGAAGGCCAAG 5' |
158 | Arabidopsis thaliana | TGACAGAAGAAAGAGAGCAC | alignment | plot | GSM278335-4060 | AT1G53160.1 cdna:known chromosome:TAIR10:1:19806421:19807301:1 gene:AT1G53160 transcript:AT1G53160.1 | 0 | 602 | 0 | 4 | 4 | 2 | 5' TGACAGAAGAAAGAGAGCAC 3' |||||||||| |||||||| 3' ATCTACTGTCTTCTCTCTCTCGTCTGTCGAAG 5' |
159 | Arabidopsis thaliana | ATGATGCTGTTGGGTTTCTC | alignment | plot | GSM278335-4060 | AT3G04290.1 cdna:known chromosome:TAIR10:3:1133320:1136316:-1 gene:AT3G04290 transcript:AT3G04290.1 | 2 | 1097 | 0.02 | 6 | 6 | 2.5 | 5' ATGATGCTGTTGGGTTTCTC 3' ||||| ||o|||| |||||| 3' TTGCTACTAGGATAACCGAAAGAGACAGCCTA 5' |
160 | Arabidopsis thaliana | AGCTGGCTCTTCCGGGCGAA | alignment | plot | GSM278335-4060 | AT2G32060.1 cdna:known chromosome:TAIR10:2:13639016:13640316:-1 gene:AT2G32060 transcript:AT2G32060.1 | 2 | 94 | 0.01 | 3 | 1 | 3 | 5' AGCTGGCTCTTCCGGGCGAA 3' |||||| | |||||oo|||| 3' AAACTCGACC-AAAAGGCTTGCTTCTCTTCGT 5' |
161 | Arabidopsis thaliana | ACTTTTCACTGTTTGATTCGT | alignment | plot | GSM278335-4060 | AT3G20300.1 cdna:known chromosome:TAIR10:3:7079617:7081921:-1 gene:AT3G20300 transcript:AT3G20300.1 | 1 | 1235 | 0 | 6 | 6 | 3.5 | 5' ACTTTTCACTGTTTGATTCGT 3' | |o||||||o|o|||||| | 3' GGTATTAGAAGTGATAGACTAAG-AGGTAATA 5' |
162 | Arabidopsis thaliana | TTGACAGAAGATAGAGAGCAC | alignment | plot | GSM278335-4060 | AT1G27370.1 cdna:known chromosome:TAIR10:1:9505201:9508280:-1 gene:AT1G27370 transcript:AT1G27370.1 | 0 | 2379 | 0 | 11 | 2.75 | 1 | 5' TTGACAGAAGATAGAGAGCAC 3' ||||||||||| ||||||||| 3' CATCAACTGTCTTCTCTCTCTCGTGACATCTT 5' |
163 | Arabidopsis thaliana | CTCGACCTGAGGGTCGAGTGGT | alignment | plot | GSM278335-4060 | AT4G34050.1 cdna:known chromosome:TAIR10:4:16310775:16312216:1 gene:AT4G34050 transcript:AT4G34050.1 | 2 | 786 | 0.03 | 10 | 5 | 4 | 5' CTCGACCTGAGGGTCGAGTGGT 3' ||||| |o||||||| ||oo|o 3' TCTAGAGCTAGGCTCCCAG-TCGTCGTTCTCG 5' |
164 | Arabidopsis thaliana | TTGGACTGAAGGGAGCTCC | alignment | plot | GSM278335-4060 | AT4G18390.1 cdna:known chromosome:TAIR10:4:10162953:10165562:-1 gene:AT4G18390 transcript:AT4G18390.1 | 2 | 1387 | 0.02 | 5 | 2.5 | 2.5 | 5' TTGGACTGAAGGGAGCTCC 3' ||||||||||||| |o|| 3' ACTTAACCTGACTTCCCAGGGGGACAACTTTG 5' |
165 | Arabidopsis thaliana | TTGGACTGAAGGGAGCTCCCT | alignment | plot | GSM278335-4060 | AT4G18390.1 cdna:known chromosome:TAIR10:4:10162953:10165562:-1 gene:AT4G18390 transcript:AT4G18390.1 | 2 | 1387 | 0.01 | 5 | 2.5 | 3 | 5' TTGGACTGAAGGGAGCTCCCT 3' ||||||||||||| | |||| 3' ACTTAACCTGACTTCCCAGG-GGGACAACTTT 5' |
166 | Arabidopsis thaliana | ATTGCAATGGCAACACTAAA | alignment | plot | GSM278335-4060 | AT5G07250.2 cdna:known chromosome:TAIR10:5:2274260:2275990:-1 gene:AT5G07250 transcript:AT5G07250.2 | 0 | 1028 | 0.01 | 8 | 4 | 3.5 | 5' ATTGCAATGGCAACACTAAA 3' |||o|| | | ||||||||| 3' GTGTTAATGTGA-CTTTGTGATTTTTTATTGT 5' |
167 | Arabidopsis thaliana | TGGGTGGTGATCATATAAGAT | alignment | plot | GSM278335-4060 | AT1G69770.1 cdna:known chromosome:TAIR10:1:26248318:26253585:-1 gene:AT1G69770 transcript:AT1G69770.1 | 2 | 2037 | 0 | 9 | 9 | 2 | 5' TGGGTGGTGATCATATAAGAT 3' |||||o|||||||||||||o 3' ATTCTCCCACTACTAGTATATTCTGTACGAAA 5' |
168 | Arabidopsis thaliana | TTCGCTTGCAGAGAGAAATCAC | alignment | plot | GSM278335-4060 | AT2G39681.1 cdna:known chromosome:TAIR10:2:16539384:16540417:-1 gene:AT2G39681 transcript:AT2G39681.1 | 0 | 418 | 0 | 83 | 83 | 1.5 | 5' TTCGCTTGCAGAGAGAAATCAC 3' |||||||| |||||o||||||| 3' TAGTAAGCGAACCTCTCTTTTTAGTGTTTTGG 5' |
169 | Arabidopsis thaliana | TGTCTTCATCGTCATCACAA | alignment | plot | GSM278335-4060 | AT4G17100.1 cdna:known chromosome:TAIR10:4:9609910:9612655:-1 gene:AT4G17100 transcript:AT4G17100.1 | 2 | 221 | 0.01 | 3 | 1.5 | 2.5 | 5' TGTCTTCATCGTCATCACAA 3' ||o|||||||o|||o||| | 3' CTCAACGGAAGTAGTAGTGGTGGTAGCAGAGG 5' |
170 | Arabidopsis thaliana | TGATTGAGCCGTGTCAATATC | alignment | plot | GSM278335-4060 | AT3G60630.1 cdna:known chromosome:TAIR10:3:22410365:22412608:-1 gene:AT3G60630 transcript:AT3G60630.1 | 0 | 1056 | 0 | 92 | 92 | 1 | 5' TGATTGAGCCGTGTCAATATC 3' |||||||||||o|o||||||| 3' CAACACTAACTCGGCGCGGTTATAGGGAACGC 5' |
171 | Arabidopsis thaliana | TGAGAAGAAGAAGAAGAAAA | alignment | plot | GSM278335-4060 | AT5G11000.1 cdna:known chromosome:TAIR10:5:3479029:3480425:-1 gene:AT5G11000 transcript:AT5G11000.1 | 1 | 50 | 0.04 | 5 | 5 | 3 | 5' TGAGAAGAAGAAGAAGAAAA 3' o|||||||||||||o ||| 3' ACCCCTTCTTCTTCTTCTTTCTTTCTTATTTT 5' |
172 | Arabidopsis thaliana | TTGAGCCGTGCCAATATCACG | alignment | plot | GSM278335-4060 | AT3G60630.1 cdna:known chromosome:TAIR10:3:22410365:22412608:-1 gene:AT3G60630 transcript:AT3G60630.1 | 2 | 1053 | 0 | 23 | 23 | 2.5 | 5' TTGAGCCGTGCCAATATCACG 3' ||||||||o||||||||| | 3' CACTAACTCGGCGCGGTTATAGGGAACGCGCT 5' |
173 | Arabidopsis thaliana | ATCGAAGGAGATGGAGGACG | alignment | plot | GSM278335-4060 | AT3G26200.1 cdna:known chromosome:TAIR10:3:9589282:9591179:1 gene:AT3G26200 transcript:AT3G26200.1 | 0 | 1445 | 0.03 | 18 | 18 | 4 | 5' ATCGAAGGAGATGGAGGACG 3' |||o|||o|| |oo||o||o 3' AGGTTAGTTTCTTC-ATTTCTTGTAATTCATT 5' |
174 | Arabidopsis thaliana | ACGGTTCCGAGTTCGGGTTCG | alignment | plot | GSM278335-4060 | AT4G00750.1 cdna:known chromosome:TAIR10:4:314353:317675:1 gene:AT4G00750 transcript:AT4G00750.1 | 1 | 1070 | 0 | 2 | 2 | 4 | 5' ACGGTTCCGAGTTCGGGTTCG 3' || |o|||||||| |o| ||| 3' ACTCTGACGAGGCTCAA-CTCTAGCAGAGATC 5' |
175 | Arabidopsis thaliana | CGACCCAAGAGCTTTGGGTCT | alignment | plot | GSM278335-4060 | AT5G16990.1 cdna:known chromosome:TAIR10:5:5581658:5584029:-1 gene:AT5G16990 transcript:AT5G16990.1 | 2 | 1061 | 0.01 | 4 | 4 | 3 | 5' CGAC-CCAAGAGCTTTGGGTCT 3' |o|| ||||||o|||||||| | 3' GTGGTTGAGGTTCTTGAAACCCATAAACAGCA 5' |
176 | Arabidopsis thaliana | TTCCACAGCTTTCTTGAACTT | alignment | plot | GSM278335-4060 | AT4G24150.1 cdna:known chromosome:TAIR10:4:12535972:12539387:1 gene:AT4G24150 transcript:AT4G24150.1 | 0 | 848 | 0 | 12 | 12 | 3 | 5' TTCCACA-GCTTTCTTGAACTT 3' ||||||| |||||||||||| 3' ACTAAGGTGTACGAAAGAACTTGCTCCTGCCG 5' |
177 | Arabidopsis thaliana | TTAGATTCACGCACAAACTCG | alignment | plot | GSM278335-4060 | AT1G31280.1 cdna:known chromosome:TAIR10:1:11181711:11185344:1 gene:AT1G31280 transcript:AT1G31280.1 | 0 | 3233 | 0 | 76 | 76 | 1 | 5' TTAGATTCACGCACAAACTCG 3' |||||||||||||||||||| 3' GGTTAATCTAAGTGCGTGTTTGAGGAAAGATG 5' |
178 | Arabidopsis thaliana | TCCAAAGGGATCGCATTGATCC | alignment | plot | GSM278335-4060 | AT1G12820.1 cdna:known chromosome:TAIR10:1:4368760:4371293:-1 gene:AT1G12820 transcript:AT1G12820.1 | 0 | 1895 | 0 | 14 | 14 | 2 | 5' TCCAAAGGGATCGCATTGATCC 3' |||||||||||||||||| | | 3' CTGTAGGTTTCCCTAGCGTAACAAAGCATGGA 5' |
179 | Arabidopsis thaliana | TACAAGCAGTTGCAGTTGCA | alignment | plot | GSM278335-4060 | ATCG00020.1 cdna:known chromosome:TAIR10:Pt:383:1444:-1 gene:ATCG00020 transcript:ATCG00020.1 | 2 | 463 | 0.02 | 12 | 12 | 3 | 5' TACAAGCAGTTGCAGTTGCA 3' || ||||||o||||o|||| 3' TCTTTTG-TCGTCAGCGTCGACGTTGTCCTCG 5' |
180 | Arabidopsis thaliana | TAGACCATTTGTGAGAAGGGA | alignment | plot | GSM278335-4060 | AT3G57230.1 cdna:known chromosome:TAIR10:3:21177423:21180932:1 gene:AT3G57230 transcript:AT3G57230.1 | 2 | 796 | 0 | 6 | 3 | 0.5 | 5' TAGACCATTTGTGAGAAGGGA 3' ||||||||||||||||||o|| 3' ACAGATCTGGTAAACACTCTTCTCTTAAGAAC 5' |
181 | Arabidopsis thaliana | TTTCGTTGTCTGTTCGACCTT | alignment | plot | GSM278335-4060 | AT2G47460.1 cdna:known chromosome:TAIR10:2:19476337:19479478:1 gene:AT2G47460 transcript:AT2G47460.1 | 0 | 402 | 0 | 8 | 8 | 3 | 5' TTTCGTTGTCTGTTCGACCTT 3' ||||||||||||||| ||| 3' AAATAAAGCAACAGACAAGAGGGACCATCTAC 5' |
182 | Arabidopsis thaliana | AAACGACGTCGTTGGTGATT | alignment | plot | GSM278335-4060 | AT5G40350.1 cdna:known chromosome:TAIR10:5:16138544:16141134:-1 gene:AT5G40350 transcript:AT5G40350.1 | 2 | 671 | 0.03 | 5 | 5 | 3 | 5' AAACGACGTCGTTGGTGATT 3' | ||||||||||||| || | 3' CAACTATGCTGCAGCAACCTCTTATGTATAGG 5' |
183 | Arabidopsis thaliana | TGACAGAAGAAAGAGAGCAC | alignment | plot | GSM278335-4060 | AT3G15270.1 cdna:known chromosome:TAIR10:3:5140365:5141348:-1 gene:AT3G15270 transcript:AT3G15270.1 | 0 | 655 | 0.02 | 28 | 28 | 3 | 5' TGACAGAAGAAAGAGAGCAC 3' |||||||||| ||||||| 3' ATCTACTGTCTTCTCTCTCTCGCCCTCCCAAA 5' |
184 | Arabidopsis thaliana | TTCGAGGCCTATTAAACCTCTG | alignment | plot | GSM278335-4060 | AT5G54770.1 cdna:known chromosome:TAIR10:5:22246592:22248332:1 gene:AT5G54770 transcript:AT5G54770.1 | 2 | 1179 | 0.01 | 21 | 21 | 4 | 5' TTCGAGGCCTATTAAACCTCTG 3' |||o||o| |||||||| o||o 3' TTTCAAGTTCTGTATAATTTGTGGATTTGAGG 5' |
185 | Arabidopsis thaliana | TAAGTTAAGATTTGTGAAGAA | alignment | plot | GSM278335-4060 | AT1G18090.1 cdna:known chromosome:TAIR10:1:6224501:6227822:1 gene:AT1G18090 transcript:AT1G18090.1 | 0 | 1818 | 0.01 | 6 | 3 | 2.5 | 5' TAAGTTAAGATTTGTGAAGAA 3' |||o|||||| ||o|o||||| 3' TAGTATTTAATTCTCAATATTTCTTCGATTCT 5' |
186 | Arabidopsis thaliana | GGAATCTTGATGATGCTGCAT | alignment | plot | GSM278335-4060 | AT4G36920.1 cdna:known chromosome:TAIR10:4:17400847:17403332:1 gene:AT4G36920 transcript:AT4G36920.1 | 0 | 1340 | 0 | 25 | 12.5 | 2 | 5' GGAATCTTGATGATGCTGCAT 3' o|||||o||||||||||||| 3' CCTCTCTTAGGACTACTACGACGTCGTAAACA 5' |
187 | Arabidopsis thaliana | TCCGGAGGGATTCCTTCCTT | alignment | plot | GSM278335-4060 | AT4G05320.6 cdna:known chromosome:TAIR10:4:2718187:2719988:1 gene:AT4G05320 transcript:AT4G05320.6 | 2 | 403 | 0.01 | 3 | 0.6 | 3 | 5' TCCGGAGGGATTCCTTCCTT 3' ||||||||o|| ||o|| || 3' GACCAGGCCTCCTTATGGGAGAAACAGAACCT 5' |
188 | Arabidopsis thaliana | GGCGCCTCTCCATTGGCAGG | alignment | plot | GSM278335-4060 | AT5G19090.1 cdna:known chromosome:TAIR10:5:6387489:6390024:1 gene:AT5G19090 transcript:AT5G19090.1 | 0 | 1458 | 0.01 | 6 | 3.33333 | 3.5 | 5' GGCGCCTCTCCATTGGCAGG 3' o |||||| |||||||| || 3' GTGGTGGCGGAG-GGTAACCGGCCTTTGGACC 5' |
189 | Arabidopsis thaliana | TTCCACAGCTTTCTTGAACTT | alignment | plot | GSM278335-4060 | AT2G22840.1 cdna:known chromosome:TAIR10:2:9728756:9731301:1 gene:AT2G22840 transcript:AT2G22840.1 | 0 | 792 | 0 | 49 | 49 | 3 | 5' TTCCACA-GCTTTCTTGAACTT 3' ||||||| |||||||||||| 3' CGGAAGGTGTCCGAAAGAACTTGCTACCGCCG 5' |
190 | Arabidopsis thaliana | GATGGATATGTCTTCAAGGAC | alignment | plot | GSM278335-4060 | AT3G58730.1 cdna:known chromosome:TAIR10:3:21718257:21719980:-1 gene:AT3G58730 transcript:AT3G58730.1 | 2 | 885 | 0.03 | 4 | 4 | 3 | 5' GATGGATATGTCTTCAAGGAC 3' ||o|| |||||||||||o|| 3' AGACGTATCTCTACAGAAGTTCTTGGTAAAGG 5' |
191 | Arabidopsis thaliana | CTCGCAAATCCCTCGCAGAA | alignment | plot | GSM278335-4060 | AT5G14570.1 cdna:known chromosome:TAIR10:5:4695084:4697078:-1 gene:AT5G14570 transcript:AT5G14570.1 | 2 | 1081 | 0.02 | 4 | 4 | 3 | 5' CTCGCAAATCCCTCGCAGAA 3' ||| |||||| |||| |||| 3' AAGTGAG-GTTTAGAGAGCATCTTTATAGGCC 5' |
192 | Arabidopsis thaliana | AAACGACGTCGTTTCGTTCT | alignment | plot | GSM278335-4060 | AT5G64700.1 cdna:known chromosome:TAIR10:5:25865172:25866927:-1 gene:AT5G64700 transcript:AT5G64700.1 | 0 | 1124 | 0.02 | 4 | 4 | 3.5 | 5' AAACGACGTCGTTT-CGTTCT 3' | |||||o|||||| | |||| 3' AACGTGTGCTGTAGCAAAAGGAAGACATTTAG 5' |
193 | Arabidopsis thaliana | TGAGAAGAAGAAGAAGAAAA | alignment | plot | GSM278335-4060 | AT2G40520.1 cdna:known chromosome:TAIR10:2:16923068:16925914:1 gene:AT2G40520 transcript:AT2G40520.1 | 2 | 1787 | 0.03 | 30 | 0.0472016 | 1.5 | 5' TGAGAAGAAGAAGAAGAAAA 3' o|||||||||||||||||| 3' TCTTCTTCTTCTTCTTCTTCTTTTTCTTTTTG 5' |
194 | Arabidopsis thaliana | GGTGGTGCGACAGGCTTTGGT | alignment | plot | GSM278335-4060 | AT3G18780.1 cdna:known chromosome:TAIR10:3:6474871:6477204:1 gene:AT3G18780 transcript:AT3G18780.1 | 2 | 1216 | 0.03 | 3 | 1.5 | 3.5 | 5' GGTGGTGCGACAGGCTTTGGT 3' ||||||||o|| |o|o||oo| 3' AAGTCCACCACGTTG-CTGGAATTAGAAGTAC 5' |
195 | Arabidopsis thaliana | AAACGACGTCGTTTCGTTCT | alignment | plot | GSM278335-4060 | AT4G11080.1 cdna:known chromosome:TAIR10:4:6760867:6763272:-1 gene:AT4G11080 transcript:AT4G11080.1 | 2 | 120 | 0.01 | 4 | 4 | 2.5 | 5' AAACGACGTCGTTTCGTTCT 3' ||||||| ||||||| |||o 3' AGAGTTTGCTGAAGCAAAGAAAGGGGAACAGA 5' |
196 | Arabidopsis thaliana | CATGATCTTGTCTTCCTCTC | alignment | plot | GSM278335-4060 | AT1G25570.1 cdna:known chromosome:TAIR10:1:8991826:8995496:-1 gene:AT1G25570 transcript:AT1G25570.1 | 2 | 1807 | 0 | 4 | 4 | 1.5 | 5' CATGATCTTGTCTTCCTCTC 3' |||o||| |||||||||||| 3' TTCAGTATTAGTACAGAAGGAGAGGTCTACGT 5' |
197 | Arabidopsis thaliana | TACCATCTCTTGAGGAACTTGG | alignment | plot | GSM278335-4060 | AT1G07930.1 cdna:known chromosome:TAIR10:1:2458244:2460790:1 gene:AT1G07930 transcript:AT1G07930.1 | 2 | 1273 | 0.03 | 18 | 3.6 | 4 | 5' TACCATCTCTTGAGGAACTTGG 3' o||||| |||| |o||| |||| 3' CGTAGTGGTA-AGAAGTTCTTAAACCCGAGGA 5' |
198 | Arabidopsis thaliana | TCCACTTCCGTTGTAGCTTCG | alignment | plot | GSM278335-4060 | AT4G37685.1 cdna:known chromosome:TAIR10:4:17705049:17706089:1 gene:AT4G37685 transcript:AT4G37685.1 | 1 | 464 | 0 | 3 | 3 | 4 | 5' TCCACTTCC-GTTGTAGCTTCG 3' | ||||||| |o||||o|o||o 3' TCTACGTGAAGGACGACATTGGAGTCAGACGT 5' |
199 | Arabidopsis thaliana | TCATCATCATCATCATCGTAT | alignment | plot | GSM278335-4060 | AT1G60220.1 cdna:known chromosome:TAIR10:1:22208332:22212171:1 gene:AT1G60220 transcript:AT1G60220.1 | 0 | 797 | 0.03 | 60 | 2.85714 | 1.5 | 5' TCATCATCATCATCATCGT-AT 3' |||||||||||||||||o| || 3' TAGTAGTAGTAGTAGTAGTAGTAGTAGTTAGT 5' |
200 | Arabidopsis thaliana | CTATCATCATCATCCTCGTAA | alignment | plot | GSM278335-4060 | AT1G60220.1 cdna:known chromosome:TAIR10:1:22208332:22212171:1 gene:AT1G60220 transcript:AT1G60220.1 | 0 | 797 | 0.03 | 60 | 2.85714 | 3.5 | 5' CTATCATCATCATCCTCGTAA 3' | |||||||||||| ||o| | 3' AGTAG-TAGTAGTAGTAGTAGTAGTAGTTAGT 5' |
201 | Arabidopsis thaliana | ACTGTATATATGTAAGTGACA | alignment | plot | GSM278335-4060 | AT1G63330.1 cdna:known chromosome:TAIR10:1:23489840:23491519:1 gene:AT1G63330 transcript:AT1G63330.1 | 1 | 1295 | 0.01 | 5 | 2.5 | 4 | 5' ACT-GTATATATGTAAGTGACA 3' | | ||||||||||||o|o || 3' GTATCATCATATATACATTTATAGTTCAAAAT 5' |
202 | Arabidopsis thaliana | GAGCATTGTGGAGATCAAAT | alignment | plot | GSM278335-4060 | AT1G65060.2 cdna:known chromosome:TAIR10:1:24167202:24171502:-1 gene:AT1G65060 transcript:AT1G65060.2 | 2 | 1951 | 0.02 | 14 | 7 | 2.5 | 5' GAGCATTGTGGAGATCAAAT 3' o||||||||||| | ||||| 3' GTGTTTCGTAACACCTAT-GTTTACTTGCAAA 5' |
203 | Arabidopsis thaliana | TCAATGCATTGAAAGTGACTA | alignment | plot | GSM278335-4060 | AT1G63330.1 cdna:known chromosome:TAIR10:1:23489840:23491519:1 gene:AT1G63330 transcript:AT1G63330.1 | 2 | 775 | 0 | 4 | 1 | 1 | 5' TCAATGCATTGAAAGTGACTA 3' ||||||||||||| ||||||| 3' AGCTAGTTACGTAACTTGCACTGATTTAATCC 5' |
204 | Arabidopsis thaliana | TTGACAGAAGATAGAGAGCAC | alignment | plot | GSM278335-4060 | AT5G43270.2 cdna:known chromosome:TAIR10:5:17360305:17363773:-1 gene:AT5G43270 transcript:AT5G43270.2 | 2 | 1160 | 0 | 10 | 3.33333 | 1 | 5' TTGACAGAAGATAGAGAGCAC 3' ||||||||||| ||||||||| 3' CTTAAACTGTCTTCTCTCTCTCGTGGTAGTTC 5' |
205 | Arabidopsis thaliana | TCGACCAGGGGGTCGAGTGAT | alignment | plot | GSM278335-4060 | AT1G70730.3 cdna:known chromosome:TAIR10:1:26669020:26673166:-1 gene:AT1G70730 transcript:AT1G70730.3 | 2 | 1913 | 0.04 | 5 | 1.66667 | 4 | 5' TCGACCAGGGGGTCGAGTG-AT 3' ||o||||||||oo|o|| | || 3' TTGTAGTTGGTCCCCTGGTTCTCGTAGGACTC 5' |
206 | Arabidopsis thaliana | ACTCGACCAGGGGGTCGAGTG | alignment | plot | GSM278335-4060 | AT1G70730.3 cdna:known chromosome:TAIR10:1:26669020:26673166:-1 gene:AT1G70730 transcript:AT1G70730.3 | 2 | 1915 | 0.03 | 5 | 1.66667 | 4 | 5' ACTCGACCAGGGGGTCGAGTG 3' | ||o||||||||oo|o|| | 3' GTTGT-AGTTGGTCCCCTGGTTCTCGTAGGAC 5' |
207 | Arabidopsis thaliana | TGCCTGGCTCCCTGTATGCC | alignment | plot | GSM278335-4060 | AT2G28350.1 cdna:known chromosome:TAIR10:2:12114331:12116848:1 gene:AT2G28350 transcript:AT2G28350.1 | 2 | 1340 | 0 | 25 | 25 | 1 | 5' TGCCTGGCTCCCTGTATGCC 3' ||||||||||||||||| || 3' TCGAACGGACCGAGGGACATAAGGACGTCCTC 5' |
208 | Arabidopsis thaliana | TTGGACTGAAGGGAGCTCC | alignment | plot | GSM278335-4060 | AT3G15030.2 cdna:known chromosome:TAIR10:3:5061681:5064038:1 gene:AT3G15030 transcript:AT3G15030.2 | 2 | 1487 | 0 | 26 | 8.66667 | 2.5 | 5' TTGGACTGAAGGGAGCTCC 3' o|||||||||||| o|o|| 3' CATTGACCTGACTTCCCCTGGGGAGACTCTTA 5' |
209 | Arabidopsis thaliana | TTGGACTGAAGGGAGCTCCCT | alignment | plot | GSM278335-4060 | AT3G15030.2 cdna:known chromosome:TAIR10:3:5061681:5064038:1 gene:AT3G15030 transcript:AT3G15030.2 | 2 | 1487 | 0.03 | 26 | 8.66667 | 3.5 | 5' TTGGACTGAAGGGAGCTCCCT 3' o|||||||||||| o|o|| | 3' CATTGACCTGACTTCCCCTGGGG-AGACTCTT 5' |
210 | Arabidopsis thaliana | TGACAGAAGAAAGAGAGCAC | alignment | plot | GSM278335-4060 | AT5G43270.2 cdna:known chromosome:TAIR10:5:17360305:17363773:-1 gene:AT5G43270 transcript:AT5G43270.2 | 2 | 1159 | 0.01 | 7 | 2.33333 | 1 | 5' TGACAGAAGAAAGAGAGCAC 3' |||||||||| ||||||||| 3' TTAAACTGTCTTCTCTCTCTCGTGGTAGTTCT 5' |
211 | Arabidopsis thaliana | TGTTGCCGTAGCTGCAGCGGC | alignment | plot | GSM278335-4060 | AT3G16100.1 cdna:known chromosome:TAIR10:3:5459172:5460790:1 gene:AT3G16100 transcript:AT3G16100.1 | 0 | 686 | 0 | 23 | 23 | 4 | 5' TGTTGCCGTAGCTGCAGCGGC 3' |||||||| |||o |||| o| 3' AGAAACAACGGC-TCGGGGTCGATGTAGTTAC 5' |
212 | Arabidopsis thaliana | ACCATCAATTCATCGTGGCCG | alignment | plot | GSM278335-4060 | AT4G18120.1 cdna:known chromosome:TAIR10:4:10038126:10042248:1 gene:AT4G18120 transcript:AT4G18120.1 | 0 | 2608 | 0 | 17 | 8.5 | 4 | 5' ACCATCAATTCATCGTGGCCG 3' |||||||||||| |o|| | o 3' GTGTTGGTAGTTAAGT-GTACAGATCTTGTTA 5' |
213 | Arabidopsis thaliana | TCGCTTGGTGCAGGTCGGGA | alignment | plot | GSM278335-4060 | AT1G48410.2 cdna:known chromosome:TAIR10:1:17886098:17892586:-1 gene:AT1G48410 transcript:AT1G48410.2 | 2 | 522 | 0 | 9 | 3 | 2.5 | 5' TCGCTTGGTGCAGGTCGGGA 3' | |||||o||||| |||||| 3' CTCCATCGAACTACGTCGAGCCCTTGACTAAC 5' |
214 | Arabidopsis thaliana | TCTTGCTTAAATGAGTATTCCA | alignment | plot | GSM278335-4060 | AT3G25795.1 cdna:known chromosome:TAIR10:3:9417551:9418705:-1 gene:AT3G25795 transcript:AT3G25795.1 | 0 | 888 | 0.01 | 8 | 8 | 0.5 | 5' TCTTGCTTAAATGAGTATTCCA 3' |||||||o|||||||||||||| 3' TTGTAGAACGAGTTTACTCATAAGGTACCTCT 5' |
215 | Arabidopsis thaliana | ACCCTCACAAATTCCTCGCA | alignment | plot | GSM278335-4060 | AT4G22840.1 cdna:known chromosome:TAIR10:4:11991497:11993770:-1 gene:AT4G22840 transcript:AT4G22840.1 | 1 | 275 | 0.02 | 3 | 3 | 4 | 5' ACCCTCACAAATTCCTCGCA 3' || | ||||||||||||| 3' TAGATGCG-GTGTTTAAGGAGCTAGGCGGTTG 5' |
216 | Arabidopsis thaliana | GATGATGATGATACTCAGGA | alignment | plot | GSM278335-4060 | AT1G13430.1 cdna:known chromosome:TAIR10:1:4606500:4607747:1 gene:AT1G13430 transcript:AT1G13430.1 | 0 | 446 | 0.03 | 2 | 2 | 3.5 | 5' GATGATGATGATACTCAGGA 3' |||||||||||| | ||o| 3' ACTACTACTACTACTACTATTCTTGAACCAGT 5' |
217 | Arabidopsis thaliana | TCCTCCACCACCGAGAGCATT | alignment | plot | GSM278335-4060 | AT2G32690.1 cdna:known chromosome:TAIR10:2:13863717:13864596:-1 gene:AT2G32690 transcript:AT2G32690.1 | 2 | 615 | 0.03 | 25 | 6.25 | 3.5 | 5' TCCTCCACCACCGAGAGCATT 3' |||||||||||| |o || || 3' CTGGAGGAGGTGGTGG-TTACGGAAATGGTTT 5' |
218 | Arabidopsis thaliana | TGCTGGTGGTGCTCCTCCAT | alignment | plot | GSM278335-4060 | AT3G07050.1 cdna:known chromosome:TAIR10:3:2229590:2232361:-1 gene:AT3G07050 transcript:AT3G07050.1 | 2 | 165 | 0.04 | 4 | 4 | 3.5 | 5' TGCTGGTGGTGCTCCTCCAT 3' | || ||||||||||| ||o 3' GAAGAAGAACACCACGAGGAAGTGGAAAAAGT 5' |
219 | Arabidopsis thaliana | TGAGAAGAAGAAGAAGAAAA | alignment | plot | GSM278335-4060 | AT5G07842.1 cdna:known chromosome:TAIR10:5:2506634:2508435:-1 gene:AT5G07842 transcript:AT5G07842.1 | 1 | 80 | 0.04 | 7 | 3.5 | 3 | 5' TGA-GAAGAAGAAGAAGAAAA 3' || ||||||||||||||| | 3' AGGTCTACTTCTTCTTCTTCTTCTTCTTCTTT 5' |
220 | Arabidopsis thaliana | TGATTGAGCCGTGTCAATATC | alignment | plot | GSM278335-4060 | AT2G45160.1 cdna:known chromosome:TAIR10:2:18617862:18620150:-1 gene:AT2G45160 transcript:AT2G45160.1 | 0 | 1014 | 0 | 68 | 68 | 1 | 5' TGATTGAGCCGTGTCAATATC 3' |||||||||||o|o||||||| 3' TACCACTAACTCGGCGCGGTTATAGGGAACGC 5' |
221 | Arabidopsis thaliana | CATCGTCTTCTTCCTCGATC | alignment | plot | GSM278335-4060 | AT5G54830.1 cdna:known chromosome:TAIR10:5:22273070:22276301:1 gene:AT5G54830 transcript:AT5G54830.1 | 1 | 2845 | 0.01 | 5 | 5 | 4 | 5' CATCGTCTTCTTCCTCGATC 3' |||o||||||||| |o || 3' TACCTTAGTAGAAGAAGGTGTAAGGGGTTTTG 5' |
222 | Arabidopsis thaliana | TTGAGCCGTGCCAATATCACG | alignment | plot | GSM278335-4060 | AT2G45160.1 cdna:known chromosome:TAIR10:2:18617862:18620150:-1 gene:AT2G45160 transcript:AT2G45160.1 | 2 | 1011 | 0 | 8 | 8 | 2.5 | 5' TTGAGCCGTGCCAATATCACG 3' ||||||||o||||||||| | 3' CACTAACTCGGCGCGGTTATAGGGAACGCGCT 5' |
223 | Arabidopsis thaliana | TTGAAAATGTTGTTGCTGCTGCTG | alignment | plot | GSM278335-4060 | AT5G25220.2 cdna:known chromosome:TAIR10:5:8736074:8738584:1 gene:AT5G25220 transcript:AT5G25220.2 | 2 | 245 | 0 | 3 | 1.5 | 3 | 5' TTGAAAATGTTGTTGCTGCTGCTG 3' ||| |||||||||||||| ||| | 3' GAAGAACCTTTACAACAACGACAACGCCTCCT 5' |
224 | Arabidopsis thaliana | GAGGTCGAGTGTCTTCTACT | alignment | plot | GSM278335-4060 | AT5G17540.1 cdna:known chromosome:TAIR10:5:5781987:5783706:-1 gene:AT5G17540 transcript:AT5G17540.1 | 2 | 1459 | 0.04 | 2 | 2 | 3 | 5' GAGGTCGAGTGTCTTCTACT 3' ||| |||||| |||| |||| 3' GTCTCTCAAGCTCAAAGAA-ATGATTCTGTTA 5' |
225 | Arabidopsis thaliana | GGAATCTTGATGATGCTGCAT | alignment | plot | GSM278335-4060 | AT5G60120.2 cdna:known chromosome:TAIR10:5:24207689:24211743:1 gene:AT5G60120 transcript:AT5G60120.2 | 0 | 1821 | 0 | 23 | 11.5 | 1 | 5' GGAATCTTGATGATGCTGCAT 3' o|||||o|||||||||||||| 3' TCACTCTTAGGACTACTACGACGTAAACTTTT 5' |
226 | Arabidopsis thaliana | TCTATCTTCTTCGTCTTCGAT | alignment | plot | GSM278335-4060 | AT1G77122.1 cdna:known chromosome:TAIR10:1:28977357:28978743:-1 gene:AT1G77122 transcript:AT1G77122.1 | 2 | 321 | 0.02 | 4 | 0.00569801 | 2.5 | 5' TCTATCTTCTTCGTCTTCGAT 3' ||| |||||||| |||||o|| 3' AAGAAGA-AGAAGAAGAAGAAGTTACTAGTTG 5' |
227 | Arabidopsis thaliana | TAACTATTTTGAGAAGAAGTG | alignment | plot | GSM278335-4060 | AT3G20720.1 cdna:known chromosome:TAIR10:3:7239908:7247005:1 gene:AT3G20720 transcript:AT3G20720.1 | 2 | 1462 | 0.01 | 2 | 1 | 2.5 | 5' TAACTAT-TTTGAGAAGAAGTG 3' ||||| | ||||||||o||||| 3' CCTATTGACAGAAACTCTTTTTCACACCCCCA 5' |
228 | Arabidopsis thaliana | TTGGACTGAAGGGAGCTCC | alignment | plot | GSM278335-4060 | AT1G30210.1 cdna:known chromosome:TAIR10:1:10627185:10630538:-1 gene:AT1G30210 transcript:AT1G30210.1 | 2 | 1142 | 0.02 | 4 | 2 | 2.5 | 5' TTGGACTGAAGGGAGCTCC 3' ||||||||||||| |o|| 3' ACTTAACCTGACTTCCCAGGGGGATGATGACA 5' |
229 | Arabidopsis thaliana | TTGGACTGAAGGGAGCTCCCT | alignment | plot | GSM278335-4060 | AT1G30210.1 cdna:known chromosome:TAIR10:1:10627185:10630538:-1 gene:AT1G30210 transcript:AT1G30210.1 | 2 | 1142 | 0 | 4 | 2 | 3 | 5' TTGGACTGAAGGGAGCTCCCT 3' ||||||||||||| | |||| 3' ACTTAACCTGACTTCCCAGG-GGGATGATGAC 5' |
230 | Arabidopsis thaliana | TGCCAAAGGAGATTTGCCTCG | alignment | plot | GSM278335-4060 | AT2G33770.1 cdna:known chromosome:TAIR10:2:14277558:14283040:-1 gene:AT2G33770 transcript:AT2G33770.1 | 2 | 751 | 0.01 | 2 | 2 | 3 | 5' TGCCAAAGGAGATTTGCCTCG 3' ||||||||||||| ||||o o 3' GTTAACGGTTTCCTCTATACGGGATCTTACTC 5' |
231 | Arabidopsis thaliana | CTCGGGATGGTTCCTCGATG | alignment | plot | GSM278335-4060 | AT1G24490.2 cdna:known chromosome:TAIR10:1:8682234:8685271:1 gene:AT1G24490 transcript:AT1G24490.2 | 2 | 310 | 0.03 | 2 | 1 | 3 | 5' CTCGGGATGGTTCCTCGATG 3' ||||| ||||| ||| |||| 3' CTAAGAGCCGTACCA-GGAACTACTTTAGTTT 5' |
232 | Arabidopsis thaliana | TAACGCACAACACTAAGCCAT | alignment | plot | GSM278335-4060 | AT3G19890.1 cdna:known chromosome:TAIR10:3:6914910:6916142:-1 gene:AT3G19890 transcript:AT3G19890.1 | 1 | 322 | 0 | 2 | 2 | 1.5 | 5' TAACGCACAACACTAAGCCAT 3' |||||||||||||||o|||| 3' GAACCTTGCGTGTTGTGATTTGGTAGCGTAAC 5' |
233 | Arabidopsis thaliana | TCCGGAGGGATTCCTTCCTT | alignment | plot | GSM278335-4060 | AT3G52590.1 cdna:known chromosome:TAIR10:3:19505629:19506932:1 gene:AT3G52590 transcript:AT3G52590.1 | 2 | 146 | 0 | 4 | 4 | 1 | 5' TCCGGAGGGATTCCTTCCTT 3' ||||||||||||||||| || 3' GACTAGGCCTCCCTAAGGAAGAAACAGAACCT 5' |
234 | Arabidopsis thaliana | TGGAGCCATGGTGGGAGCTG | alignment | plot | GSM278335-4060 | AT5G08000.1 cdna:known chromosome:TAIR10:5:2563554:2565491:1 gene:AT5G08000 transcript:AT5G08000.1 | 0 | 130 | 0 | 153 | 153 | 4 | 5' TGGAGCCATGGTGGGAGCTG 3' ||||||||||| |||| | 3' GGTCTCCTCGGTACCAACCTCAAGTCTCTATG 5' |
235 | Arabidopsis thaliana | TGCTCGATTGTCTGGTTGAG | alignment | plot | GSM278335-4060 | AT4G15410.1 cdna:known chromosome:TAIR10:4:8814801:8816805:1 gene:AT4G15410 transcript:AT4G15410.1 | 1 | 1284 | 0.04 | 21 | 21 | 4 | 5' TGCTCGATTGTCTGGTTGAG 3' |||||||| || ||||o |o 3' TCGAACGAGCTACCAAACCAGGTTAAGACAGT 5' |
236 | Arabidopsis thaliana | TCATCATCATCATCATCTTCT | alignment | plot | GSM278335-4060 | AT5G08600.1 cdna:known chromosome:TAIR10:5:2786267:2789871:1 gene:AT5G08600 transcript:AT5G08600.1 | 2 | 330 | 0 | 19 | 0.0576299 | 0 | 5' TCATCATCATCATCATCTTCT 3' ||||||||||||||||||||| 3' TAGTAGTAGTAGTAGTAGTAGAAGACTGAGGT 5' |
237 | Arabidopsis thaliana | TCATCTTCATCATCATCATCT | alignment | plot | GSM278335-4060 | AT2G21420.1 cdna:known chromosome:TAIR10:2:9169713:9171746:1 gene:AT2G21420 transcript:AT2G21420.1 | 0 | 1184 | 0.02 | 60 | 2.85714 | 2 | 5' TCATCTTCATCATCATCATCT 3' ||||| |||||||||||||| 3' TAGTAGTAGTAGTAGTAGTAGTAGTAGCGTTG 5' |
238 | Arabidopsis thaliana | CTATCATCATCATCCTCGTAA | alignment | plot | GSM278335-4060 | AT2G21420.1 cdna:known chromosome:TAIR10:2:9169713:9171746:1 gene:AT2G21420 transcript:AT2G21420.1 | 0 | 1184 | 0.03 | 60 | 2.85714 | 3.5 | 5' CTATCATCATCATCCTCGTAA 3' | |||||||||||| ||o| | 3' AGTAG-TAGTAGTAGTAGTAGTAGTAGCGTTG 5' |
239 | Arabidopsis thaliana | TGCTCGATTGTCTGGTTGAG | alignment | plot | GSM278335-4060 | AT3G28830.1 cdna:known chromosome:TAIR10:3:10831168:10833284:1 gene:AT3G28830 transcript:AT3G28830.1 | 2 | 1540 | 0.04 | 11 | 11 | 3 | 5' TGCTCGATTGTCTGGTTGAG 3' || | ||||||||| ||||| 3' GTGAACCA-CTAACAGACGAACTCGAGACTGA 5' |
240 | Arabidopsis thaliana | CTATCATCATCATCCTCGTAA | alignment | plot | GSM278335-4060 | AT5G63740.1 cdna:known chromosome:TAIR10:5:25510776:25511456:-1 gene:AT5G63740 transcript:AT5G63740.1 | 2 | 272 | 0.02 | 19 | 0.0576299 | 3 | 5' CTATCATCATCATCCTCGTAA 3' | ||||||||||||||||| 3' AGTAG-TAGTAGTAGTAGGAGCAGGAGCAGGA 5' |
241 | Arabidopsis thaliana | GTGAGTTTAGGGTTCTTGAA | alignment | plot | GSM278335-4060 | AT5G48810.1 cdna:known chromosome:TAIR10:5:19789067:19790334:-1 gene:AT5G48810 transcript:AT5G48810.1 | 0 | 77 | 0.01 | 17 | 17 | 4 | 5' GTGAGTTTAGGGTTCTTGAA 3' |||||||| ||o| |||o | 3' TAGACACTCAAACCCTA-GAATGTGGTTGGCG 5' |
242 | Arabidopsis thaliana | TCATCATCATCATCATCTTCC | alignment | plot | GSM278335-4060 | AT5G63740.1 cdna:known chromosome:TAIR10:5:25510776:25511456:-1 gene:AT5G63740 transcript:AT5G63740.1 | 2 | 278 | 0.03 | 19 | 0.0576299 | 1 | 5' TCATCATCATCATCATCTTCC 3' ||||||||||||||||| ||| 3' TAGTAGTAGTAGTAGTAGTAGTAGGAGCAGGA 5' |
243 | Arabidopsis thaliana | GTGAGTTTAGGGTTCTTGAA | alignment | plot | GSM278335-4060 | AT3G52230.1 cdna:known chromosome:TAIR10:3:19371213:19372687:1 gene:AT3G52230 transcript:AT3G52230.1 | 2 | 81 | 0 | 4 | 4 | 2 | 5' GTGAGTTTAGGGTTCTTGAA 3' ||||||||||||| ||||| 3' CTAAAACTCAAATCCCAA-AACTTAACTTAGC 5' |
244 | Arabidopsis thaliana | CTATCATCATCATCCTCGTAA | alignment | plot | GSM278335-4060 | AT2G21420.1 cdna:known chromosome:TAIR10:2:9169713:9171746:1 gene:AT2G21420 transcript:AT2G21420.1 | 2 | 1178 | 0 | 19 | 0.0576299 | 2.5 | 5' CTATCATCATCATCCTCGTAA 3' | |||||||||||| |||o|| 3' AGTAG-TAGTAGTAGTAGTAGCGTTGGTCCTC 5' |
245 | Arabidopsis thaliana | AACGGCGTGAGTGCCGTAGA | alignment | plot | GSM278335-4060 | AT1G80950.1 cdna:known chromosome:TAIR10:1:30412544:30415113:-1 gene:AT1G80950 transcript:AT1G80950.1 | 1 | 462 | 0 | 6 | 6 | 4 | 5' AACGGCGTGAGTGCCGTAGA 3' |||o||||o|o|o|| || | 3' TCTTTTGTCGCATTTATGGGATGTTTAGTTCA 5' |
246 | Arabidopsis thaliana | TCTATCTTCTTCGTCTTCGAT | alignment | plot | GSM278335-4060 | AT2G44310.1 cdna:known chromosome:TAIR10:2:18309212:18309826:1 gene:AT2G44310 transcript:AT2G44310.1 | 2 | 369 | 0.05 | 6 | 6 | 3 | 5' TCTATCTTCTTCGTCTTCGAT 3' | |||||||||o|||o|||| 3' TTCGTGCTAGAAGAAGTAGAGGCTAGATTTGA 5' |
247 | Arabidopsis thaliana | CTCTGCCAAAGGAGATTTGC | alignment | plot | GSM278335-4060 | AT4G09730.1 cdna:known chromosome:TAIR10:4:6136249:6139711:1 gene:AT4G09730 transcript:AT4G09730.1 | 2 | 1932 | 0.05 | 3 | 3 | 3 | 5' CTCTGCCAAAGGAGATTTGC 3' || |||| |||o|||o|||| 3' CCGAGA-ACGGCTTCTTCTGAACGGGGCCTTT 5' |
248 | Arabidopsis thaliana | TTCCACAGCTTTCTTGAACTT | alignment | plot | GSM278335-4060 | AT2G45480.1 cdna:known chromosome:TAIR10:2:18745340:18747533:1 gene:AT2G45480 transcript:AT2G45480.1 | 0 | 525 | 0 | 9 | 9 | 2 | 5' TTCCAC-AGCTTTCTTGAACTT 3' |||||| ||||||||||||| | 3' TCTAAGGTGTTCGAAAGAACTTGCAAATGCTG 5' |
249 | Arabidopsis thaliana | TAGTCCGGTTTTGGATACGTG | alignment | plot | GSM278335-4060 | AT1G42970.1 cdna:known chromosome:TAIR10:1:16127381:16129843:1 gene:AT1G42970 transcript:AT1G42970.1 | 2 | 1585 | 0.05 | 29 | 29 | 4 | 5' TAGTCCGGTTTTGGATACGTG 3' |||| ||o|||o|o||| ||o 3' ACGTATCATGCTAAAGCTTATTCATTGAGTAC 5' |
250 | Arabidopsis thaliana | TTGAAGAGGACTTGGAACTTCGAT | alignment | plot | GSM278335-4060 | AT2G47940.1 cdna:known chromosome:TAIR10:2:19617986:19622232:-1 gene:AT2G47940 transcript:AT2G47940.1 | 2 | 290 | 0.02 | 5 | 2.5 | 4 | 5' TTGAAGAGGACTTGGAACTTCGAT 3' |||| ||||| ||||||||| || 3' AAAAAACTCCTCCT-AACCTTGAAAGTAGAGC 5' |
251 | Arabidopsis thaliana | GATGATGATGATACTCAGGA | alignment | plot | GSM278335-4060 | AT3G25013.1 cdna:known chromosome:TAIR10:3:9113875:9116188:1 gene:AT3G25013 transcript:AT3G25013.1 | 1 | 289 | 0.01 | 2 | 2 | 2.5 | 5' GATGATGATGATACTCAGGA 3' || |||||||||||o |||| 3' TCTCCTTCTACTACTATGGTTCCTGATACTCG 5' |
252 | Arabidopsis thaliana | AGGTCTTGGGTTCGAGGAAC | alignment | plot | GSM278335-4060 | AT3G59150.1 cdna:known chromosome:TAIR10:3:21872706:21874735:1 gene:AT3G59150 transcript:AT3G59150.1 | 0 | 1782 | 0.01 | 6 | 6 | 4 | 5' AGGTCTTGGGTTCGAGGAAC 3' |||| |||o||o|||| || 3' TGGCTCCA-AACTCAGGCTCGGTGTATACGGT 5' |
253 | Arabidopsis thaliana | TTGACAGAAGATAGAGAGCAC | alignment | plot | GSM278335-4060 | AT2G42200.1 cdna:known chromosome:TAIR10:2:17587407:17589630:1 gene:AT2G42200 transcript:AT2G42200.1 | 2 | 948 | 0 | 3 | 3 | 1 | 5' TTGACAGAAGATAGAGAGCAC 3' ||||||||||| ||||||||| 3' CCTAAACTGTCTTCTCTCTCTCGTGTCAAACT 5' |
254 | Arabidopsis thaliana | TGATGCTAGCCGTGAAGGAGAAAA | alignment | plot | GSM278335-4060 | AT3G26190.1 cdna:known chromosome:TAIR10:3:9583465:9585109:-1 gene:AT3G26190 transcript:AT3G26190.1 | 1 | 552 | 0 | 4 | 2 | 4 | 5' TGATGCTAGCCGTGAAGGAGAAAA 3' o|||o||||| ||o |o||||||| 3' GTATGCTATGATCGCCATATTCTCTTTTCTCG 5' |
255 | Arabidopsis thaliana | ACTCAGCCAGGGGGTCGAGTG | alignment | plot | GSM278335-4060 | AT1G70730.1 cdna:known chromosome:TAIR10:1:26668865:26672779:-1 gene:AT1G70730 transcript:AT1G70730.1 | 2 | 1737 | 0.03 | 5 | 1.66667 | 4 | 5' ACTCAGCCAGGGGGTCGAGTG 3' | |||o|||||||oo|o|| | 3' GTTGT-AGTTGGTCCCCTGGTTCTCGTAGGAC 5' |
256 | Arabidopsis thaliana | TATTCGACCCCCAGGTCGAG | alignment | plot | GSM278335-4060 | AT2G44060.2 cdna:known chromosome:TAIR10:2:18226319:18228151:1 gene:AT2G44060 transcript:AT2G44060.2 | 2 | 753 | 0.05 | 26 | 13 | 3.5 | 5' TATTCGACCCCCAGGTCGAG 3' o||| || |||||o|||||o 3' TTCAGTAA-CTCGGGGTTCAGCTTTAGTAAGT 5' |
257 | Arabidopsis thaliana | CTGGTTTAGTCACTTTCACTG | alignment | plot | GSM278335-4060 | AT1G47128.1 cdna:known chromosome:TAIR10:1:17282825:17285670:-1 gene:AT1G47128 transcript:AT1G47128.1 | 2 | 577 | 0.03 | 4 | 4 | 3 | 5' CTGGTTTAGTCACTTTCACTG 3' |||||||| || |o|o||||| 3' GCTAGACCAAATAAG-GGAGGTGACGAGGTTA 5' |
258 | Arabidopsis thaliana | CTATCATCATCATCCTCGTAA | alignment | plot | GSM278335-4060 | AT1G49900.1 cdna:known chromosome:TAIR10:1:18473908:18477643:-1 gene:AT1G49900 transcript:AT1G49900.1 | 2 | 1964 | 0.02 | 19 | 0.0576299 | 2.5 | 5' CTATCATCATCATCCTCGTAA 3' | |||||||||||||||o| | 3' AGTAG-TAGTAGTAGTAGGAGTAGTGGTAGTA 5' |
259 | Arabidopsis thaliana | CTATCATCATCATCCTCGTAA | alignment | plot | GSM278335-4060 | AT1G49900.1 cdna:known chromosome:TAIR10:1:18473908:18477643:-1 gene:AT1G49900 transcript:AT1G49900.1 | 2 | 1931 | 0.01 | 19 | 0.0576299 | 2.5 | 5' CTATCATCATCATCCTCGTAA 3' | |||||||||||| ||o||| 3' AGTAG-TAGTAGTAGTAGTAGTATTATTCTTG 5' |
260 | Arabidopsis thaliana | AAGCTCAGGAGGGATAGCGCC | alignment | plot | GSM278335-4060 | AT5G57735.1 cdna:known chromosome:TAIR10:5:23394005:23394500:1 gene:AT5G57735 transcript:AT5G57735.1 | 1 | 429 | 0 | 20 | 20 | 3 | 5' AAGCTCAGGAGGGATAGCGCC 3' ||||||||||||o|||| o | 3' GTATTTCGAGTCCTCCTTATCTTTGTTGTTTG 5' |
261 | Arabidopsis thaliana | CATCCAAGGTGTTTGTAGAAA | alignment | plot | GSM278335-4060 | AT1G09750.1 cdna:known chromosome:TAIR10:1:3157501:3159148:1 gene:AT1G09750 transcript:AT1G09750.1 | 0 | 1494 | 0.01 | 41 | 41 | 4 | 5' CATCCAAGGTGTTTGTAGAAA 3' ||| |||o||o| ||||||| 3' GCAAGTATGTTTCATATACATCTTCCAGTTCG 5' |
262 | Arabidopsis thaliana | TGACAGAAGAAAGAGAGCAC | alignment | plot | GSM278335-4060 | AT2G42200.1 cdna:known chromosome:TAIR10:2:17587407:17589630:1 gene:AT2G42200 transcript:AT2G42200.1 | 2 | 947 | 0 | 4 | 4 | 1 | 5' TGACAGAAGAAAGAGAGCAC 3' |||||||||| ||||||||| 3' CTAAACTGTCTTCTCTCTCTCGTGTCAAACTC 5' |
263 | Arabidopsis thaliana | ATCCCTCGCAAATTTTGCGA | alignment | plot | GSM278335-4060 | AT5G38480.1 cdna:known chromosome:TAIR10:5:15409697:15411516:1 gene:AT5G38480 transcript:AT5G38480.1 | 2 | 437 | 0.04 | 5 | 2.5 | 3.5 | 5' ATCCC-TCGCAAATTTTGCGA 3' ||||| ||o|| ||||||| | 3' TTTTAGGGTAGTGTCTAAAACGATTCGAGCCT 5' |
264 | Arabidopsis thaliana | ATGTGCCCATCTTCACCATC | alignment | plot | GSM278335-4060 | AT1G63130.1 cdna:known chromosome:TAIR10:1:23412730:23415149:1 gene:AT1G63130 transcript:AT1G63130.1 | 2 | 662 | 0 | 2 | 2 | 3 | 5' ATGTGCCCATCTTCACCATC 3' ||o| ||||| |o||||||| 3' CGACTATA-GGGTAAAGGTGGTAGACTGGTTG 5' |
265 | Arabidopsis thaliana | TGCTCGATTGTCTGGTTGAG | alignment | plot | GSM278335-4060 | AT5G23820.1 cdna:known chromosome:TAIR10:5:8031268:8033020:1 gene:AT5G23820 transcript:AT5G23820.1 | 0 | 758 | 0.02 | 23 | 23 | 4 | 5' TGCTCGATTGTCTGGTTGAG 3' |||||||||| || ||| | 3' CTGTACGAGCTAAC-GAACAAGTATAGCGATA 5' |
266 | Arabidopsis thaliana | TTCCACAGCTTTCTTGAACTT | alignment | plot | GSM278335-4060 | AT5G66420.1 cdna:known chromosome:TAIR10:5:26521674:26525029:-1 gene:AT5G66420 transcript:AT5G66420.1 | 2 | 1737 | 0.04 | 5 | 2.5 | 3 | 5' TTCCA-CAGCTTTCTTGAACTT 3' |o||| ||||||o||oo||||| 3' GTTAGGGTGGTCGAAGGAGTTTGAAACGTCTA 5' |
267 | Arabidopsis thaliana | TGGAGCCATGGTGGGAGCTG | alignment | plot | GSM278335-4060 | AT5G14380.1 cdna:known chromosome:TAIR10:5:4635797:4636676:-1 gene:AT5G14380 transcript:AT5G14380.1 | 2 | 295 | 0 | 9 | 9 | 2 | 5' TGGAGCCATGGTGGGAGCTG 3' ||||||| |||| ||||||| 3' GCCGACCTCGGAACCAACCTCGACTTCCTCGG 5' |
268 | Arabidopsis thaliana | TGATTGAGCCGTGTCAATATC | alignment | plot | GSM278335-4060 | AT4G00150.1 cdna:known chromosome:TAIR10:4:57199:59286:-1 gene:AT4G00150 transcript:AT4G00150.1 | 0 | 867 | 0.01 | 90 | 90 | 1 | 5' TGATTGAGCCGTGTCAATATC 3' |||||||||||o|o||||||| 3' GACAACTAACTCGGCGCGGTTATAGGGGACTC 5' |
269 | Arabidopsis thaliana | TAGAAGGGAGTGAGTTCTCG | alignment | plot | GSM278335-4060 | AT5G38660.1 cdna:known chromosome:TAIR10:5:15473109:15475552:-1 gene:AT5G38660 transcript:AT5G38660.1 | 2 | 801 | 0.03 | 13 | 6.5 | 3 | 5' TAGAAGGGAGTGAGTTCTCG 3' ||||||o|||||o|| ||| 3' AGGTTTCTTCCTTCACTTAA-AGCGGACAGAA 5' |
270 | Arabidopsis thaliana | TCTTCTTCGATCGGTTCTGA | alignment | plot | GSM278335-4060 | AT2G19450.1 cdna:known chromosome:TAIR10:2:8426206:8429736:1 gene:AT2G19450 transcript:AT2G19450.1 | 0 | 1900 | 0.01 | 25 | 25 | 3 | 5' TCTTCTTCGATCGGTTCTGA 3' ||||||||o|| |||| |o| 3' GAAAAGAAGAAGTTA-CCAATATTGTGATAAA 5' |
271 | Arabidopsis thaliana | TGCTCGTCTTCGCCGGTTAGG | alignment | plot | GSM278335-4060 | AT1G15370.1 cdna:known chromosome:TAIR10:1:5287047:5288577:1 gene:AT1G15370 transcript:AT1G15370.1 | 2 | 312 | 0.02 | 3 | 3 | 4 | 5' TGCTCGTCTTCGCCGGTTAGG 3' |o|||||||| |||ooo ||| 3' TAGTATGAGCAGAAACGGTTGTTCCTTCTACG 5' |
272 | Arabidopsis thaliana | TAGGATCAAGATGGGGATGA | alignment | plot | GSM278335-4060 | AT3G21350.2 cdna:known chromosome:TAIR10:3:7517070:7518744:1 gene:AT3G21350 transcript:AT3G21350.2 | 2 | 181 | 0.04 | 3 | 1.5 | 3 | 5' TAGGATCAAGATGGGGATGA 3' || |||||||| ||| |||| 3' ATCAATGCTAGTTCT-CCCATACTTAACTAGG 5' |
273 | Arabidopsis thaliana | TGAGAAGAAGAAGAAGAAAA | alignment | plot | GSM278335-4060 | AT3G15140.1 cdna:known chromosome:TAIR10:3:5099532:5101781:-1 gene:AT3G15140 transcript:AT3G15140.1 | 2 | 234 | 0.05 | 30 | 0.0472016 | 1.5 | 5' TGAGAAGAAGAAGAAGAAAA 3' o|||||||||||||||||| 3' TCTTCTTCTTCTTCTTCTTCTTTTCAGTCTCC 5' |
274 | Arabidopsis thaliana | AGAGATACGACGGAGATGGA | alignment | plot | GSM278335-4060 | AT1G54140.1 cdna:known chromosome:TAIR10:1:20213967:20215223:-1 gene:AT1G54140 transcript:AT1G54140.1 | 0 | 42 | 0 | 7 | 7 | 3.5 | 5' AGAGATACGACGGAGATGGA 3' |||o|o|||||||||| |o 3' ACCGTCTTTGTGCTGCCTCT-CTAACTACTTG 5' |
275 | Arabidopsis thaliana | TTCCACAGCTTTCTTGAACTG | alignment | plot | GSM278335-4060 | AT5G50460.1 cdna:known chromosome:TAIR10:5:20551437:20552566:-1 gene:AT5G50460 transcript:AT5G50460.1 | 0 | 467 | 0.02 | 29 | 29 | 4 | 5' TTCCACAGCTTTCTTGAACTG 3' ||||||||||| ||o|| |o 3' GCTTTAGGTGTCGAAA-AATTTAATCAAACGA 5' |
276 | Arabidopsis thaliana | TGACAGAAGAGAGTTAGCAC | alignment | plot | GSM278335-4060 | AT2G33810.1 cdna:known chromosome:TAIR10:2:14305001:14306072:1 gene:AT2G33810 transcript:AT2G33810.1 | 2 | 797 | 0.01 | 12 | 12 | 2 | 5' TGACAGAAGAGAGTTAGCAC 3' |||||||||||||| |||| 3' TCTGACTGTCTTCTCTCATTCGTTTCGGACAA 5' |
277 | Arabidopsis thaliana | TCGAACCCGAACCTGAACCGA | alignment | plot | GSM278335-4060 | AT3G27200.1 cdna:known chromosome:TAIR10:3:10043522:10044373:-1 gene:AT3G27200 transcript:AT3G27200.1 | 2 | 460 | 0.01 | 3 | 3 | 3.5 | 5' TCGAACCCGAACCTGAA-CCGA 3' o |||||||| |||||| |||| 3' CTAGGTCTTGGGCTGGGACTTAGGCTTGGGCT 5' |
278 | Arabidopsis thaliana | CGGACCCGAAACCTGACCCG | alignment | plot | GSM278335-4060 | AT3G27200.1 cdna:known chromosome:TAIR10:3:10043522:10044373:-1 gene:AT3G27200 transcript:AT3G27200.1 | 2 | 441 | 0.01 | 3 | 3 | 3.5 | 5' CGGACCCGAAACCTGACCCG 3' ||o||||||| ||||| || 3' TTAGGCTTGGGCTT-GGACTTGGACTTCCTCT 5' |
279 | Arabidopsis thaliana | TGACAGAAGATAGAGAGCAC | alignment | plot | GSM278335-4060 | AT3G49780.1 cdna:known chromosome:TAIR10:3:18465679:18466376:1 gene:AT3G49780 transcript:AT3G49780.1 | 1 | 377 | 0.04 | 8 | 8 | 4 | 5' TGACAGAAGATAGAGAGCAC 3' o||||||o|o|||o|| || 3' TCTGCTTGTCTTTTGTCTTTCATGATGTCACT 5' |
280 | Arabidopsis thaliana | TGCCTGGCTCCCTGTATGCC | alignment | plot | GSM278335-4060 | AT1G77850.1 cdna:known chromosome:TAIR10:1:29272313:29275419:1 gene:AT1G77850 transcript:AT1G77850.1 | 0 | 1420 | 0 | 445 | 445 | 0.5 | 5' TGCCTGGCTCCCTGTATGCC 3' ||||||||||||||o||||| 3' TATAACGGACCGAGGGACGTACGGTCGTCCTT 5' |
281 | Arabidopsis thaliana | TCAATGCATTGAAAGTGACTA | alignment | plot | GSM278335-4060 | AT5G41170.1 cdna:known chromosome:TAIR10:5:16478486:16480584:-1 gene:AT5G41170 transcript:AT5G41170.1 | 1 | 892 | 0 | 4 | 1 | 1 | 5' TCAATGCATTGAAAGTGACTA 3' |||||||||||||||||| || 3' AGCTAGTTACGTAACTTTCACTAATGTAGTCC 5' |
282 | Arabidopsis thaliana | GCTACCGCAGCCGCTGCCGCA | alignment | plot | GSM278335-4060 | AT2G27900.2 cdna:known chromosome:TAIR10:2:11877430:11886013:1 gene:AT2G27900 transcript:AT2G27900.2 | 2 | 508 | 0 | 5 | 2.5 | 2 | 5' GCTACCGCAGCCGCTGCCGCA 3' || |||||||| ||||||||| 3' TGCTCGTTGGCGTCGTCGACGGCGTCGTGCAC 5' |
283 | Arabidopsis thaliana | TGACAGAAGAAAGAGAGCAC | alignment | plot | GSM278335-4060 | AT3G57920.1 cdna:known chromosome:TAIR10:3:21444321:21446035:-1 gene:AT3G57920 transcript:AT3G57920.1 | 2 | 855 | 0 | 3 | 3 | 1 | 5' TGACAGAAGAAAGAGAGCAC 3' |||||||||| ||||||||| 3' TCAAACTGTCTTCTCTCTCTCGTGTCGAACTT 5' |
284 | Arabidopsis thaliana | GGAATCTTGATGATGCTGCAT | alignment | plot | GSM278335-4060 | AT3G54990.1 cdna:known chromosome:TAIR10:3:20373718:20376522:-1 gene:AT3G54990 transcript:AT3G54990.1 | 0 | 976 | 0 | 5 | 5 | 1.5 | 5' GGAATCTTGATGATGCTGCAT 3' ||||||o||||||||||||| 3' TTTCCCTTAGGACTACTACGACGTTGACAGAA 5' |
285 | Arabidopsis thaliana | TCGATAAACCTCTGCATCCAG | alignment | plot | GSM278335-4060 | AT1G01040.1 cdna:known chromosome:TAIR10:1:23146:31227:1 gene:AT1G01040 transcript:AT1G01040.1 | 2 | 3433 | 0 | 3 | 3 | 1 | 5' TCGATAA-ACCTCTGCATCCAG 3' ||||||| |||||||||||||| 3' TGTAGCTATTATGGAGACGTAGGTCGAGTAAC 5' |
286 | Arabidopsis thaliana | ATGATGCGCAAATGCGGATA | alignment | plot | GSM278335-4060 | AT5G04853.1 cdna:known chromosome:TAIR10:5:1410527:1410703:-1 gene:AT5G04853 transcript:AT5G04853.1 | 0 | 102 | 0.01 | 9 | 9 | 4 | 5' ATGATGCGCAAATGCGGATA 3' |o||| |o|||||||oo|| 3' GTGGTGCTA-GTGTTTACGTTTACGGCGGTAC 5' |
287 | Arabidopsis thaliana | AGATGGACGAGTGCAAGAATT | alignment | plot | GSM278335-4060 | AT5G17630.1 cdna:known chromosome:TAIR10:5:5809334:5810962:1 gene:AT5G17630 transcript:AT5G17630.1 | 0 | 1558 | 0.04 | 17 | 17 | 4 | 5' AGATGGACGAGTGCAAGAATT 3' || |o|||||| ||||||o| 3' TAGTTC-ATCTGCTCCAGTTCTTGATTCATCT 5' |
288 | Arabidopsis thaliana | CTGGGTTGTGATGTTCTGCA | alignment | plot | GSM278335-4060 | AT1G55020.1 cdna:known chromosome:TAIR10:1:20525708:20530273:1 gene:AT1G55020 transcript:AT1G55020.1 | 2 | 2367 | 0.04 | 2 | 2 | 3 | 5' CTGGGTTGTGATGTTCTGCA 3' |||o|o||||||| ||| || 3' CTTCGACTCGACACTACCAGAAGTTTTTGTGA 5' |
289 | Arabidopsis thaliana | TACCATCTCTTGAGGAACTTGG | alignment | plot | GSM278335-4060 | AT1G07920.1 cdna:known chromosome:TAIR10:1:2454846:2457321:1 gene:AT1G07920 transcript:AT1G07920.1 | 2 | 1261 | 0.01 | 18 | 3.6 | 3 | 5' TACCATCTCTTGAGGAACTTGG 3' o||||| |||| |o|||||||| 3' CGTAGTGGTA-AGAAGTTCTTGAACCCGAGGA 5' |
290 | Arabidopsis thaliana | TGACAGAAGAAAGAGAGCAC | alignment | plot | GSM278335-4060 | AT5G38610.1 cdna:known chromosome:TAIR10:5:15460691:15461459:-1 gene:AT5G38610 transcript:AT5G38610.1 | 2 | 589 | 0.01 | 4 | 4 | 2 | 5' TGACAGAAGAAAGAGAGCAC 3' ||||||||||| ||||||| 3' CTACACTGTCTTCTT-CTCTCGTATAACTTAT 5' |
291 | Arabidopsis thaliana | TGACAGAAGATAGAGAGCAC | alignment | plot | GSM278335-4060 | AT5G38610.1 cdna:known chromosome:TAIR10:5:15460691:15461459:-1 gene:AT5G38610 transcript:AT5G38610.1 | 2 | 589 | 0 | 4 | 4 | 2 | 5' TGACAGAAGATAGAGAGCAC 3' |||||||||| |||||||| 3' CTACACTGTCTTCT-TCTCTCGTATAACTTAT 5' |
292 | Arabidopsis thaliana | TGAGAAGAAGAAGAAGAAAA | alignment | plot | GSM278335-4060 | AT3G25150.2 cdna:known chromosome:TAIR10:3:9157078:9160100:-1 gene:AT3G25150 transcript:AT3G25150.2 | 2 | 101 | 0.02 | 6 | 3 | 1.5 | 5' TGAGAAGAAGAAGAAGAAAA 3' || ||||||||||||o|||| 3' TTTTAC-CTTCTTCTTCTTTTTTTTCACCGAA 5' |
293 | Arabidopsis thaliana | TTGGACTGAAGGGAGCTCCTT | alignment | plot | GSM278335-4060 | AT1G53230.1 cdna:known chromosome:TAIR10:1:19849788:19851725:-1 gene:AT1G53230 transcript:AT1G53230.1 | 2 | 1195 | 0.02 | 8 | 8 | 3.5 | 5' TTGGACTGAAGGGAGCTCCTT 3' |||||||||||| o|o|||o 3' CAATTACCTGACTTCCCCTGGGGAGACACTAT 5' |
294 | Arabidopsis thaliana | ACTCGACCTCGAGGTCGAGTG | alignment | plot | GSM278335-4060 | AT5G06330.1 cdna:known chromosome:TAIR10:5:1934739:1935644:-1 gene:AT5G06330 transcript:AT5G06330.1 | 1 | 532 | 0.01 | 2 | 2 | 4 | 5' ACTCGACC-TCGAGGTCGAGTG 3' |||||||| |||||o| o||oo 3' GCTTGAGCTGGCAGCTCTACTTCGTAGTTGTA 5' |
295 | Arabidopsis thaliana | AGAGAAACCCAACAGCATCAT | alignment | plot | GSM278335-4060 | AT1G69160.1 cdna:known chromosome:TAIR10:1:26000214:26001588:1 gene:AT1G69160 transcript:AT1G69160.1 | 0 | 1181 | 0.04 | 12 | 12 | 4 | 5' AGAGAAACCCAACAGCATCAT 3' o|||||||||| |o||| || 3' TTAGGTTCTTTGGGTTTTTGTA-TATTGAATA 5' |
296 | Arabidopsis thaliana | TCGGACCAGGCTTCATTCCCC | alignment | plot | GSM278335-4060 | AT1G30490.1 cdna:known chromosome:TAIR10:1:10796135:10800961:-1 gene:AT1G30490 transcript:AT1G30490.1 | 2 | 806 | 0 | 54 | 31.5 | 2.5 | 5' TCGGACCAGGCTTCATTCCCC 3' o||||||||||||||| ||| 3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5' |
297 | Arabidopsis thaliana | TCGGACCAGGCTTCATCCCCC | alignment | plot | GSM278335-4060 | AT1G30490.1 cdna:known chromosome:TAIR10:1:10796135:10800961:-1 gene:AT1G30490 transcript:AT1G30490.1 | 2 | 806 | 0 | 54 | 31.5 | 2.5 | 5' TCGGACCAGGCTTCATCCCCC 3' o|||||||||||||||||| 3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAGAC 5' |
298 | Arabidopsis thaliana | GAGGAGGAGGAGCACCACCGT | alignment | plot | GSM278335-4060 | AT3G56340.1 cdna:known chromosome:TAIR10:3:20892129:20893443:-1 gene:AT3G56340 transcript:AT3G56340.1 | 2 | 473 | 0.01 | 6 | 6 | 3 | 5' GAGGAGGAGGAGCACCACCGT 3' ||| || ||||||||||||| 3' GCTCCTCGTCGTCCTCGTGGTGGCCGTCCCGC 5' |
299 | Arabidopsis thaliana | TCGACCTGGTTGTCGAGTGGT | alignment | plot | GSM278335-4060 | AT5G39030.1 cdna:known chromosome:TAIR10:5:15620066:15622486:1 gene:AT5G39030 transcript:AT5G39030.1 | 2 | 119 | 0.04 | 3 | 3 | 3.5 | 5' TCGACC-TGGTTGTCGAGTGGT 3' |||||| ||||||||||o || 3' TCAAGCTGGCACCAACAGCTTCCCCTGTAGCC 5' |
300 | Arabidopsis thaliana | GAGGTTTGCGATGAGAAAGAG | alignment | plot | GSM278335-4060 | AT5G48790.1 cdna:known chromosome:TAIR10:5:19779860:19782050:-1 gene:AT5G48790 transcript:AT5G48790.1 | 0 | 661 | 0.05 | 23 | 23 | 4 | 5' GAGGTTTGCGATGAGAAAGAG 3' | ||| |||||oo||||| || 3' TATGC-CCATACGCTGTTCTTTGTCAAGCAGA 5' |
301 | Arabidopsis thaliana | TCCTCCACCACCGAGAGCAT | alignment | plot | GSM278335-4060 | AT2G32690.2 cdna:known chromosome:TAIR10:2:13863717:13864596:-1 gene:AT2G32690 transcript:AT2G32690.2 | 2 | 585 | 0.05 | 25 | 6.25 | 3.5 | 5' TCCTCCACCACCGAGAGCAT 3' |||||||||||| |o || | 3' CTGGAGGAGGTGGTGG-TTACGGAAATGGTTT 5' |
302 | Arabidopsis thaliana | ATCGAAGGAGATGGAGGACG | alignment | plot | GSM278335-4060 | AT1G70780.1 cdna:known chromosome:TAIR10:1:26695166:26696392:-1 gene:AT1G70780 transcript:AT1G70780.1 | 2 | 595 | 0.05 | 4 | 2 | 3 | 5' ATCGAAGGAGATGGAGGACG 3' ||| |||o||| |||o|||| 3' AGTCTAGGTTCTTCT-CCTTCTGCTGGAAGTG 5' |
303 | Arabidopsis thaliana | TCGGACCAGGCTTCATTCCCC | alignment | plot | GSM278335-4060 | AT2G34710.1 cdna:known chromosome:TAIR10:2:14639323:14644273:-1 gene:AT2G34710 transcript:AT2G34710.1 | 2 | 881 | 0 | 55 | 32.5 | 2.5 | 5' TCGGACCAGGCTTCATTCCCC 3' o||||||||||||||| ||| 3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5' |
304 | Arabidopsis thaliana | TCGGACCAGGCTTCATCCCCC | alignment | plot | GSM278335-4060 | AT2G34710.1 cdna:known chromosome:TAIR10:2:14639323:14644273:-1 gene:AT2G34710 transcript:AT2G34710.1 | 2 | 881 | 0 | 55 | 32.5 | 2.5 | 5' TCGGACCAGGCTTCATCCCCC 3' o|||||||||||||||||| 3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAGAC 5' |
305 | Arabidopsis thaliana | GAGAAGATGAAGCTGTTCTG | alignment | plot | GSM278335-4060 | AT3G56950.2 cdna:known chromosome:TAIR10:3:21078297:21079856:-1 gene:AT3G56950 transcript:AT3G56950.2 | 0 | 466 | 0.01 | 19 | 9.5 | 3.5 | 5' GAGAAGATGAAGCTGTTCTG 3' |||||||||||o|||o| o 3' CTGCCTCTTCTACTTTGACGACTTCGGTGGCC 5' |
306 | Arabidopsis thaliana | TGAGAAGAAGAAGAAGAAAA | alignment | plot | GSM278335-4060 | AT5G16020.1 cdna:known chromosome:TAIR10:5:5229692:5232241:1 gene:AT5G16020 transcript:AT5G16020.1 | 0 | 51 | 0.03 | 3 | 0.12 | 2.5 | 5' TGAGAAGAAGAAGAAGAAAA 3' o|||||||||||||||| | 3' GCTTCTTCTTCTTCTTCTTCTTCTTCTTCCCA 5' |
307 | Arabidopsis thaliana | TCGGACCAGGCTTCATTCCCC | alignment | plot | GSM278335-4060 | AT3G48610.1 cdna:known chromosome:TAIR10:3:18011545:18014082:-1 gene:AT3G48610 transcript:AT3G48610.1 | 2 | 1621 | 0.04 | 2 | 2 | 3.5 | 5' TCGG-ACCAGGCTTCATTCCCC 3' |||| ||||o|||||||| || 3' AATAGCCGTGGTTCGAAGTAACGGAGAAATGA 5' |
308 | Arabidopsis thaliana | GATGATGATGATACTCAGGA | alignment | plot | GSM278335-4060 | AT2G42360.1 cdna:known chromosome:TAIR10:2:17640798:17641790:1 gene:AT2G42360 transcript:AT2G42360.1 | 1 | 238 | 0.02 | 6 | 6 | 4 | 5' GATGATGATGATA-CTCAGGA 3' ||o||||| |||| ||| o|| 3' GCTTCTGCTACTCCTATTGAGGTCTATTTCTT 5' |
309 | Arabidopsis thaliana | GCGTACAGAGTAGTCAAGCAT | alignment | plot | GSM278335-4060 | AT1G47670.1 cdna:known chromosome:TAIR10:1:17536667:17539538:-1 gene:AT1G47670 transcript:AT1G47670.1 | 2 | 1149 | 0 | 6 | 6 | 2.5 | 5' GCGTACAGAGTAGTCAAGCAT 3' ||o||||o||o|| ||||||| 3' CTTACGTATGTTTCGTC-GTTCGTATGGAGGA 5' |
310 | Arabidopsis thaliana | ACTCGACCACGAAGTCGAGT | alignment | plot | GSM278335-4060 | AT4G01320.1 cdna:known chromosome:TAIR10:4:545796:549261:1 gene:AT4G01320 transcript:AT4G01320.1 | 2 | 506 | 0.02 | 13 | 13 | 3 | 5' ACTCGACCACGAA-GTCGAGT 3' |||||| |||||| || |||| 3' GCTCTGAGCTAGTGCTTTCAACTCATGTTTCT 5' |
311 | Arabidopsis thaliana | TGGATTGGTCAAGGGAAGCGT | alignment | plot | GSM278335-4060 | AT5G23940.1 cdna:known chromosome:TAIR10:5:8076329:8079793:-1 gene:AT5G23940 transcript:AT5G23940.1 | 2 | 714 | 0.03 | 5 | 5 | 3 | 5' TGGATTGGTCAAGGGAAGCGT 3' | |||o||||||||o||| || 3' CGGAAGCTAGCCAGTTCCTTTC-CAACTCAGC 5' |
312 | Arabidopsis thaliana | GAGTCCACCGGAGCCACTCT | alignment | plot | GSM278335-4060 | AT1G11850.2 cdna:known chromosome:TAIR10:1:3999202:3999876:1 gene:AT1G11850 transcript:AT1G11850.2 | 2 | 296 | 0.05 | 4 | 4 | 3.5 | 5' GAGTCCACCGGAGCCACTCT 3' |||||||||| o|||| || 3' GCTCCTCAGGTGGCGGTGGTG-GAGGCTCAGG 5' |
313 | Arabidopsis thaliana | GCAAGATGATCACTGTGGTC | alignment | plot | GSM278335-4060 | AT1G77690.1 cdna:known chromosome:TAIR10:1:29200941:29203340:-1 gene:AT1G77690 transcript:AT1G77690.1 | 2 | 963 | 0.03 | 2 | 1 | 3.5 | 5' GCAAGATGATCACTGTGGTC 3' ||| || ||||||||o||| 3' TACTCGTACTCCTAGTGACGCCATAGAGATTT 5' |
314 | Arabidopsis thaliana | TACTCGATCATGGGGTCGAGT | alignment | plot | GSM278335-4060 | AT2G05990.1 cdna:known chromosome:TAIR10:2:2322258:2325146:1 gene:AT2G05990 transcript:AT2G05990.1 | 2 | 1131 | 0.04 | 3 | 1.5 | 3.5 | 5' TACTCGATCATGGGGTCGAGT 3' |||||o||||||| ||| | | 3' CCTTATGAGTTAGTACCACAGAT-ACTTGGGT 5' |
315 | Arabidopsis thaliana | TGATCTCTTCGTACTCTTCTTG | alignment | plot | GSM278335-4060 | AT3G11120.1 cdna:known chromosome:TAIR10:3:3481052:3481448:1 gene:AT3G11120 transcript:AT3G11120.1 | 2 | 106 | 0.05 | 6 | 6 | 3.5 | 5' TGATCTCTTCGTACTCTTCTTG 3' |o|||||o||o||| |||||| 3' AGAAATTAGAGGAGTATGCGAAGAAGAAGGTG 5' |
316 | Arabidopsis thaliana | TCATCATCATCATCATCTTCT | alignment | plot | GSM278335-4060 | AT5G08600.2 cdna:novel chromosome:TAIR10:5:2786187:2790241:1 gene:AT5G08600 transcript:AT5G08600.2 | 2 | 449 | 0.01 | 19 | 0.0576299 | 0 | 5' TCATCATCATCATCATCTTCT 3' ||||||||||||||||||||| 3' TAGTAGTAGTAGTAGTAGTAGAAGACTGAGGT 5' |
317 | Arabidopsis thaliana | TTCGCTTGCAGAGAGAAATCAC | alignment | plot | GSM278335-4060 | AT2G39675.1 cdna:known chromosome:TAIR10:2:16537288:16538277:-1 gene:AT2G39675 transcript:AT2G39675.1 | 0 | 379 | 0 | 110 | 110 | 1.5 | 5' TTCGCTTGCAGAGAGAAATCAC 3' |||||||| |||||o||||||| 3' AGATAAGCGAACATCTCTTTTTAGTGTTGTTT 5' |
318 | Arabidopsis thaliana | ACTTGGCTGATTCTATTATT | alignment | plot | GSM278335-4060 | AT3G03380.1 cdna:known chromosome:TAIR10:3:799615:808522:1 gene:AT3G03380 transcript:AT3G03380.1 | 2 | 2585 | 0.04 | 3 | 3 | 3 | 5' ACTTGGCTGATTCTAT-TATT 3' |||||||||||| o|| ||o| 3' TTCCTGAACCGACTAACGTATATGACCCTATG 5' |
319 | Arabidopsis thaliana | TCATCCTCATCATCATCGTCC | alignment | plot | GSM278335-4060 | AT5G37420.1 cdna:known chromosome:TAIR10:5:14840143:14842070:1 gene:AT5G37420 transcript:AT5G37420.1 | 2 | 1664 | 0.05 | 19 | 0.0576299 | 2 | 5' TCATCCTCATCATCATCGTCC 3' ||||| |||||||||||| || 3' TAGTAGTAGTAGTAGTAGTAGC-GGTAGTAGT 5' |
320 | Arabidopsis thaliana | TGCCTGGCTCCCTGTATGCC | alignment | plot | GSM278335-4060 | AT4G30080.1 cdna:known chromosome:TAIR10:4:14703201:14706336:-1 gene:AT4G30080 transcript:AT4G30080.1 | 0 | 1519 | 0 | 32 | 32 | 1.5 | 5' TGCCTGGCTCCCTGTATGCC 3' |||||||||||||||| o|| 3' TAATACGGACCGAGGGACATTTGGGTGCCCTT 5' |
321 | Arabidopsis thaliana | GAGAGGAGAGAGTCTTTGTT | alignment | plot | GSM278335-4060 | AT4G22670.1 cdna:known chromosome:TAIR10:4:11918080:11920910:1 gene:AT4G22670 transcript:AT4G22670.1 | 2 | 1610 | 0.04 | 9 | 9 | 2.5 | 5' GAGAGGAGAGAGTCTTTGTT 3' o||||o|o||||| |||||| 3' TTGCTTCTCTTTTCTCA-AAACAAGGACAATT 5' |
322 | Arabidopsis thaliana | TTGATGATGCTGCAGCTGCA | alignment | plot | GSM278335-4060 | AT5G55230.1 cdna:known chromosome:TAIR10:5:22402028:22405492:1 gene:AT5G55230 transcript:AT5G55230.1 | 2 | 1881 | 0.03 | 5 | 2.5 | 3 | 5' TTGATGATGCTGCAGCTGCA 3' |||||||| ||||||| || 3' CTTGAACTACTA-GACGTCGTGGTCTTTGACC 5' |
323 | Arabidopsis thaliana | TGACAGAAGAAAGAGAGCAC | alignment | plot | GSM278370-4061 | AT4G19150.1 cdna:known chromosome:TAIR10:4:10471331:10472742:-1 gene:AT4G19150 transcript:AT4G19150.1 | 0 | 1018 | 0.05 | 14 | 14 | 3.5 | 5' TGACAGAAGAAAGAGAGCAC 3' | |||||| |||||o|||| 3' AGTAAATGTCTT-TTTCTTTCGTTATGTCTCT 5' |
324 | Arabidopsis thaliana | TTTGGATTGAAGGGAGCTCTT | alignment | plot | GSM278370-4061 | AT5G06100.3 cdna:known chromosome:TAIR10:5:1837907:1840417:1 gene:AT5G06100 transcript:AT5G06100.3 | 0 | 1260 | 0 | 7 | 1.75 | 3.5 | 5' TTTGGATTGAAGGGAGCTCTT 3' ||||| ||||||||||||o 3' CTTATAACCTTACTTCCCTCGAGGTCGAAGTG 5' |
325 | Arabidopsis thaliana | TCGGCTTCAGCTCTTCCATC | alignment | plot | GSM278370-4061 | AT5G22860.1 cdna:known chromosome:TAIR10:5:7639318:7642984:-1 gene:AT5G22860 transcript:AT5G22860.1 | 2 | 1122 | 0.05 | 2 | 1 | 3 | 5' TCGGCTTCAGCTCTTCCATC 3' || ||| ||||||| ||||| 3' ATAGAG-CGACGTCGAGACGGTAGAGGTACGC 5' |
326 | Arabidopsis thaliana | TCGACCTCAAGGTCGAGTGA | alignment | plot | GSM278370-4061 | AT1G75350.1 cdna:known chromosome:TAIR10:1:28272071:28272832:1 gene:AT1G75350 transcript:AT1G75350.1 | 2 | 387 | 0.02 | 40 | 40 | 3.5 | 5' TCGACC-TCAAGGTCGAGTGA 3' ||o||| ||||o|o|||oo|| 3' CGTAGTTGGTAGTTTCGGCTTGCTAAGGGCTC 5' |
327 | Arabidopsis thaliana | TGGGTTCGAGGAACGCCAAG | alignment | plot | GSM278370-4061 | AT3G61470.1 cdna:known chromosome:TAIR10:3:22745653:22747282:1 gene:AT3G61470 transcript:AT3G61470.1 | 2 | 325 | 0.05 | 15 | 15 | 4 | 5' TGGGTTCGA-GGAACGCCAAG 3' o||||o||| |o|| o||||| 3' CAGGCCCAGGCTACTTTCTGGTTCTCCTAGTT 5' |
328 | Arabidopsis thaliana | TTTGCTTCCAGCTTTTGTCTC | alignment | plot | GSM278370-4061 | AT1G35260.1 cdna:known chromosome:TAIR10:1:12936849:12937787:-1 gene:AT1G35260 transcript:AT1G35260.1 | 0 | 245 | 0.02 | 29 | 14.5 | 4 | 5' TTTGCTTCCAGCTTTTGTCTC 3' | ||||||||o||||| o| | 3' TCTCATACGAAGGTTGAAAAGGG-GTGAGCGG 5' |
329 | Arabidopsis thaliana | TGACAGAAGAAAGAGAGCAC | alignment | plot | GSM278370-4061 | AT1G27360.3 cdna:known chromosome:TAIR10:1:9501777:9503869:1 gene:AT1G27360 transcript:AT1G27360.3 | 0 | 1250 | 0 | 24 | 6 | 1 | 5' TGACAGAAGAAAGAGAGCAC 3' |||||||||| ||||||||| 3' TCCAACTGTCTTCTCTCTCTCGTGCCACCTAT 5' |
330 | Arabidopsis thaliana | CACGTTGCAGATTCTTCATTA | alignment | plot | GSM278370-4061 | AT3G15950.1 cdna:known chromosome:TAIR10:3:5397569:5402652:-1 gene:AT3G15950 transcript:AT3G15950.1 | 2 | 476 | 0.03 | 3 | 1.5 | 3.5 | 5' CACGTTGCAGATTCTTCATTA 3' | | |||||| ||||||||o| 3' TACAGAGGAACGTCGAAGAAGTAGTAGAAATC 5' |
331 | Arabidopsis thaliana | TTCGCTTGCAGAGAGAAATCAC | alignment | plot | GSM278370-4061 | AT2G27400.1 cdna:known chromosome:TAIR10:2:11721539:11722468:-1 gene:AT2G27400 transcript:AT2G27400.1 | 0 | 379 | 0 | 29 | 29 | 1.5 | 5' TTCGCTTGCAGAGAGAAATCAC 3' |||||||| |||||o||||||| 3' GAGTAAGCGAACATCTCTTTTTAGTGTTGTTT 5' |
332 | Arabidopsis thaliana | TGCACTGCCTCTTCCCTGGCT | alignment | plot | GSM278370-4061 | AT2G44790.1 cdna:known chromosome:TAIR10:2:18461906:18463309:-1 gene:AT2G44790 transcript:AT2G44790.1 | 0 | 709 | 0 | 16 | 16 | 3.5 | 5' TGCACTGCCTCTTCCCTGGCT 3' |||||| |||o |||||||| 3' GTTTTCGTGACTGAGGTGGGACCGAGAGATTT 5' |
333 | Arabidopsis thaliana | TGGAGCCATGGTGGGAGCTG | alignment | plot | GSM278370-4061 | AT4G26550.1 cdna:known chromosome:TAIR10:4:13402515:13404345:-1 gene:AT4G26550 transcript:AT4G26550.1 | 0 | 584 | 0.01 | 20 | 20 | 4 | 5' TGGAGCCATG-GTGGGAGCTG 3' o|o|| |||| ||| |||||| 3' GGTAGCTTCTGTACACACGCTCGACTAAAAAT 5' |
334 | Arabidopsis thaliana | TCAATAGATTGGACTATGTAT | alignment | plot | GSM278370-4061 | AT5G40060.1 cdna:known chromosome:TAIR10:5:16034576:16039096:1 gene:AT5G40060 transcript:AT5G40060.1 | 1 | 3686 | 0 | 3 | 3 | 4 | 5' TCAATAGATTGGACTATGTAT 3' |||| ||||||o| o|| ||| 3' GTTGAGTT-TCTAACTTTGTAAATATGTATAT 5' |
335 | Arabidopsis thaliana | AAGAAGGAGGAACAACCTGTTG | alignment | plot | GSM278370-4061 | AT2G26690.1 cdna:known chromosome:TAIR10:2:11347147:11350993:-1 gene:AT2G26690 transcript:AT2G26690.1 | 2 | 644 | 0.01 | 3 | 3 | 3 | 5' AAGAAGGAGGAACAACCTGTTG 3' || ||o||o||| ||||||||| 3' ATGATTATTTCTTCTTCTTGGACAACTTCTTC 5' |
336 | Arabidopsis thaliana | TAGAAGGGAGTGAGTTCTCG | alignment | plot | GSM278370-4061 | AT5G38660.2 cdna:known chromosome:TAIR10:5:15470900:15475585:-1 gene:AT5G38660 transcript:AT5G38660.2 | 2 | 834 | 0.03 | 14 | 7 | 3 | 5' TAGAAGGGAGTGAGTTCTCG 3' ||||||o|||||o|| ||| 3' AGGTTTCTTCCTTCACTTAA-AGCGGACAGAA 5' |
337 | Arabidopsis thaliana | TTAGATGACCATCAACAAACT | alignment | plot | GSM278370-4061 | AT1G02860.1 cdna:known chromosome:TAIR10:1:635144:637262:1 gene:AT1G02860 transcript:AT1G02860.1 | 2 | 269 | 0 | 3 | 1.5 | 1 | 5' TTAGATGACCATCAACAAACT 3' |||||||||||||||||||| 3' TTTAAATCTACTGGTAGTTGTTTGTTTAAGTC 5' |
338 | Arabidopsis thaliana | CTGAAGTGTTTGGGGGGACTC | alignment | plot | GSM278370-4061 | AT5G10180.1 cdna:known chromosome:TAIR10:5:3193144:3197120:1 gene:AT5G10180 transcript:AT5G10180.1 | 2 | 136 | 0.01 | 4 | 4 | 3 | 5' CTGAAGTGTTTGGGGGGACTC 3' |||||||||||||o|o||| 3' CTTAAACTTCACAAACCCTCTTGAACTACACT 5' |
339 | Arabidopsis thaliana | TCGGACCAGGCTTCATTCCCC | alignment | plot | GSM278370-4061 | AT1G52150.1 cdna:known chromosome:TAIR10:1:19409711:19414678:-1 gene:AT1G52150 transcript:AT1G52150.1 | 2 | 1279 | 0 | 41 | 13.6667 | 2.5 | 5' TCGGACCAGGCTTCATTCCCC 3' o|||||||||||||||||| 3' CTTAGGCCTGGTCCGAAGTAAGGTCCGTAGAC 5' |
340 | Arabidopsis thaliana | TTCTTCTTCAAAGGCTTTTAC | alignment | plot | GSM278370-4061 | AT5G25580.1 cdna:known chromosome:TAIR10:5:8903505:8906311:1 gene:AT5G25580 transcript:AT5G25580.1 | 1 | 1304 | 0 | 5 | 5 | 3.5 | 5' TTCTTCTTCAAAGGCTTTT-AC 3' || || ||||||o|||||| || 3' ACAAAACAACAAGTTTTCGAAAAATGATAAAG 5' |
341 | Arabidopsis thaliana | TGGAGAAGCAGGGCACGTGCG | alignment | plot | GSM278370-4061 | AT1G56010.1 cdna:known chromosome:TAIR10:1:20946571:20948040:-1 gene:AT1G56010 transcript:AT1G56010.1 | 2 | 788 | 0 | 3 | 1.5 | 2 | 5' TGGAGAAGCAGGGCACGTGCG 3' ||||||||||||| |||||| 3' TTTAACCTCTTCGTCCCATGCACGAGTAACTA 5' |
342 | Arabidopsis thaliana | TCATCATCATCATCATCTTCC | alignment | plot | GSM278370-4061 | AT1G03530.1 cdna:known chromosome:TAIR10:1:880496:883391:-1 gene:AT1G03530 transcript:AT1G03530.1 | 2 | 1024 | 0.04 | 41 | 1.95238 | 1 | 5' TCATCATCATCATCATCTTCC 3' ||||||||||||||||| ||| 3' TAGTAGTAGTAGTAGTAGTAGTAGGAGTAGGA 5' |
343 | Arabidopsis thaliana | TGTCTTCATCGTCATCACAA | alignment | plot | GSM278370-4061 | AT5G37430.1 cdna:known chromosome:TAIR10:5:14842430:14844308:1 gene:AT5G37430 transcript:AT5G37430.1 | 1 | 1789 | 0.02 | 67 | 4.46667 | 4 | 5' TGTCTTCATCGTCATCACAA 3' oo|| |||o|o||||||| | 3' AGTAGTAGTAGTGGTAGTAGTGGTAGTAGTAG 5' |
344 | Arabidopsis thaliana | TGTCTTCATCGTCATCACAA | alignment | plot | GSM278370-4061 | AT5G37430.1 cdna:known chromosome:TAIR10:5:14842430:14844308:1 gene:AT5G37430 transcript:AT5G37430.1 | 1 | 1756 | 0.05 | 67 | 4.46667 | 4 | 5' TGTCTTCATCGTCATCACAA 3' oo|| |||o|o||||||| | 3' AGTAGTAGTAGTGGTAGTAGTGGTAGTAGTAG 5' |
345 | Arabidopsis thaliana | TTCCACAGCTTTCTTGAACTT | alignment | plot | GSM278370-4061 | AT5G27850.1 cdna:known chromosome:TAIR10:5:9873152:9874598:1 gene:AT5G27850 transcript:AT5G27850.1 | 2 | 542 | 0.05 | 21 | 21 | 3 | 5' TTCCAC-AGCTTTCTTGAACTT 3' |||| | ||||||||oo||||| 3' CGAAAGGAGATCGAAAGAGTTTGAAGGAAGGG 5' |
346 | Arabidopsis thaliana | ACTCGACCAGGGGGTCGAGT | alignment | plot | GSM278370-4061 | AT5G13930.1 cdna:known chromosome:TAIR10:5:4488688:4490264:1 gene:AT5G13930 transcript:AT5G13930.1 | 2 | 714 | 0.05 | 7 | 7 | 4 | 5' ACTCGACCAGGGGGTCGAGT 3' || |||| ||||o|||o|| 3' GGACTG-GCTGCTCCCTCAGTTCCACCCACAG 5' |
347 | Arabidopsis thaliana | GACAGAAGAGAGTGAGCAC | alignment | plot | GSM278370-4061 | AT1G03730.1 cdna:known chromosome:TAIR10:1:930828:931895:-1 gene:AT1G03730 transcript:AT1G03730.1 | 2 | 251 | 0 | 3 | 0.0333333 | 2 | 5' GACAGAAGAGAGTGAGCAC 3' || ||||||||| |||||| 3' TCTTCT-TCTTCTCTCTCTCGTGTTTTTTTTT 5' |
348 | Arabidopsis thaliana | TCCGGAGGGATTCCTTCCTT | alignment | plot | GSM278370-4061 | AT5G03240.2 cdna:known chromosome:TAIR10:5:771752:773165:-1 gene:AT5G03240 transcript:AT5G03240.2 | 2 | 604 | 0 | 5 | 1.25 | 0 | 5' TCCGGAGGGATTCCTTCCTT 3' |||||||||||||||||||| 3' GACTAGGCCTCCCTAAGGAAGGAACAGGACCT 5' |
349 | Arabidopsis thaliana | GATGCATCTTCACCAGGTGGA | alignment | plot | GSM278370-4061 | AT4G33380.1 cdna:known chromosome:TAIR10:4:16071892:16074873:1 gene:AT4G33380 transcript:AT4G33380.1 | 0 | 431 | 0 | 3 | 3 | 4 | 5' GATGCATCTTCACCAGGTGGA 3' || || |||||||||o ||o| 3' CGAACT-CGAAGAAGTGGTTAACTTCTTAGTC 5' |
350 | Arabidopsis thaliana | GAGGAGGAGGAGCACCACCGT | alignment | plot | GSM278370-4061 | AT1G13930.1 cdna:known chromosome:TAIR10:1:4761042:4761725:1 gene:AT1G13930 transcript:AT1G13930.1 | 2 | 392 | 0 | 14 | 4.66667 | 3 | 5' GAGGAGGAGGAGCACCACCGT 3' ||||||||||| ||||| |oo 3' CAGCCTCCTCCTCCTGGTGGTCGTGGCCACCT 5' |
351 | Arabidopsis thaliana | TGGAGAAGCAGGGCACGTGCG | alignment | plot | GSM278370-4061 | AT5G39610.1 cdna:known chromosome:TAIR10:5:15858400:15859788:-1 gene:AT5G39610 transcript:AT5G39610.1 | 2 | 781 | 0 | 6 | 6 | 2.5 | 5' TGGAGAAGCAGGGCACGTGCG 3' o||||||||||| |||||| | 3' ACCAGCCTCTTCGTCCAGTGCACTCTGCTGCT 5' |
352 | Arabidopsis thaliana | TGACAGAAGAAAGAGAGCAC | alignment | plot | GSM278370-4061 | AT1G53160.1 cdna:known chromosome:TAIR10:1:19806421:19807301:1 gene:AT1G53160 transcript:AT1G53160.1 | 1 | 602 | 0 | 3 | 3 | 2 | 5' TGACAGAAGAAAGAGAGCAC 3' |||||||||| |||||||| 3' ATCTACTGTCTTCTCTCTCTCGTCTGTCGAAG 5' |
353 | Arabidopsis thaliana | CTTGTGGAGAGGAAGCAAGA | alignment | plot | GSM278370-4061 | AT4G00230.1 cdna:known chromosome:TAIR10:4:93923:97454:1 gene:AT4G00230 transcript:AT4G00230.1 | 1 | 1459 | 0.01 | 3 | 3 | 3.5 | 5' CTTG-TGGAGAGGAAGCAAGA 3' |||| ||o|o|o||||||| | 3' GGAGAACTACTTTTTCTTCGTTGTTTACCTCG 5' |
354 | Arabidopsis thaliana | TTTGGCGCTATCCATCCTGA | alignment | plot | GSM278370-4061 | AT5G36290.2 cdna:known chromosome:TAIR10:5:14302740:14305176:1 gene:AT5G36290 transcript:AT5G36290.2 | 2 | 650 | 0.03 | 7 | 3.5 | 3.5 | 5' TTTGGCGCTATCCATCCTGA 3' ||||||o|||||| | |oo| 3' GTTCAAACCGTGATAGG-ATGGTTCAGGTCAT 5' |
355 | Arabidopsis thaliana | GATGATGATGATACTCAGGA | alignment | plot | GSM278370-4061 | AT3G15070.2 cdna:known chromosome:TAIR10:3:5070273:5073356:-1 gene:AT3G15070 transcript:AT3G15070.2 | 0 | 323 | 0.05 | 4 | 2 | 4 | 5' GATGATGATGATACTCAGGA 3' | |||||||| |||| ||| 3' CGTACAACTACTACCATGACACCTCCGGGCAT 5' |
356 | Arabidopsis thaliana | TCTTCTTCGTCGCCATTACT | alignment | plot | GSM278370-4061 | AT4G13850.4 cdna:known chromosome:TAIR10:4:8020951:8022221:1 gene:AT4G13850 transcript:AT4G13850.4 | 0 | 426 | 0.04 | 52 | 13 | 4 | 5' TCTTCTTCGTCGCCATTACT 3' o||o||o|o| ||||oo||| 3' TGGTGGAGGAGGTATCGGTGGTGAACCAGATA 5' |
357 | Arabidopsis thaliana | TAGCCAAGGATGACTTGCCTG | alignment | plot | GSM278370-4061 | AT1G17590.2 cdna:known chromosome:TAIR10:1:6050222:6052513:-1 gene:AT1G17590 transcript:AT1G17590.2 | 2 | 1210 | 0 | 3 | 0.75 | 2.5 | 5' TAGCCAAGGATGACTTGCCTG 3' o||||||||||||||| ||| 3' CATCGTCGGTTCCTACTGAAGGGAAAAAAACA 5' |
358 | Arabidopsis thaliana | CTCGACCTGAGGGTCGAGTGGT | alignment | plot | GSM278370-4061 | AT4G34050.1 cdna:known chromosome:TAIR10:4:16310775:16312216:1 gene:AT4G34050 transcript:AT4G34050.1 | 2 | 786 | 0.02 | 16 | 8 | 4 | 5' CTCGACCTGAGGGTCGAGTGGT 3' ||||| |o||||||| ||oo|o 3' TCTAGAGCTAGGCTCCCAG-TCGTCGTTCTCG 5' |
359 | Arabidopsis thaliana | TCTTCTTCGTCGCCATTACT | alignment | plot | GSM278370-4061 | AT1G61065.1 cdna:known chromosome:TAIR10:1:22490244:22491461:-1 gene:AT1G61065 transcript:AT1G61065.1 | 2 | 60 | 0.01 | 11 | 0.0155729 | 2.5 | 5' TCTTCTTCGTCGCCATTACT 3' |||||||| ||| ||o|||| 3' AAGAAGAAGAAGAAGCTGTGATGACAAAGACC 5' |
360 | Arabidopsis thaliana | TGACAGAAGAAAGAGAGCAC | alignment | plot | GSM278370-4061 | AT1G27370.1 cdna:known chromosome:TAIR10:1:9505201:9508280:-1 gene:AT1G27370 transcript:AT1G27370.1 | 1 | 2378 | 0 | 6 | 1.5 | 1 | 5' TGACAGAAGAAAGAGAGCAC 3' |||||||||| ||||||||| 3' ATCAACTGTCTTCTCTCTCTCGTGACATCTTT 5' |
361 | Arabidopsis thaliana | TTGGCATTCTGTCCACCTCC | alignment | plot | GSM278370-4061 | AT3G12120.1 cdna:known chromosome:TAIR10:3:3860285:3863050:-1 gene:AT3G12120 transcript:AT3G12120.1 | 2 | 192 | 0.01 | 5 | 2.5 | 3 | 5' TTGGCATTCTGTCCACCTCC 3' oo|||||||| ||||||| | 3' CCTTGGCCGTAAGA-AGGTGGACGTGGGTACA 5' |
362 | Arabidopsis thaliana | TTGACAGAAGATAGAGAGCAC | alignment | plot | GSM278370-4061 | AT1G27370.1 cdna:known chromosome:TAIR10:1:9505201:9508280:-1 gene:AT1G27370 transcript:AT1G27370.1 | 2 | 2379 | 0 | 3 | 0.75 | 1 | 5' TTGACAGAAGATAGAGAGCAC 3' ||||||||||| ||||||||| 3' CATCAACTGTCTTCTCTCTCTCGTGACATCTT 5' |
363 | Arabidopsis thaliana | TAATTTGGTGTTTCTTCGATC | alignment | plot | GSM278370-4061 | AT3G58820.1 cdna:known chromosome:TAIR10:3:21752533:21754615:1 gene:AT3G58820 transcript:AT3G58820.1 | 0 | 1301 | 0.01 | 2 | 0.666667 | 3.5 | 5' TAATTTGGTGT-TTCTTCGATC 3' |||o||| ||| |||||| ||| 3' AGCTATTGAACAACATAAGAAGGTAGTAGACG 5' |
364 | Arabidopsis thaliana | GAACCCAAGACCTCACCCTT | alignment | plot | GSM278370-4061 | AT3G57410.1 cdna:known chromosome:TAIR10:3:21243136:21251100:-1 gene:AT3G57410 transcript:AT3G57410.1 | 2 | 3233 | 0 | 6 | 6 | 3 | 5' GAACCCAAGACCTCACCCTT 3' o|||||||o||| ||||| | 3' TTAGTTTGGGTTTTGG-GTGGGTACTCTTTCT 5' |
365 | Arabidopsis thaliana | TGATTGAGCCGTGTCAATATC | alignment | plot | GSM278370-4061 | AT3G60630.1 cdna:known chromosome:TAIR10:3:22410365:22412608:-1 gene:AT3G60630 transcript:AT3G60630.1 | 0 | 1056 | 0 | 30 | 30 | 1 | 5' TGATTGAGCCGTGTCAATATC 3' |||||||||||o|o||||||| 3' CAACACTAACTCGGCGCGGTTATAGGGAACGC 5' |
366 | Arabidopsis thaliana | TTGAGCCGTGCCAATATCACG | alignment | plot | GSM278370-4061 | AT3G60630.1 cdna:known chromosome:TAIR10:3:22410365:22412608:-1 gene:AT3G60630 transcript:AT3G60630.1 | 2 | 1053 | 0 | 5 | 5 | 2.5 | 5' TTGAGCCGTGCCAATATCACG 3' ||||||||o||||||||| | 3' CACTAACTCGGCGCGGTTATAGGGAACGCGCT 5' |
367 | Arabidopsis thaliana | TCATGGTCGTGATCGTGGTCATC | alignment | plot | GSM278370-4061 | AT1G47970.1 cdna:known chromosome:TAIR10:1:17687269:17688816:1 gene:AT1G47970 transcript:AT1G47970.1 | 2 | 390 | 0.02 | 4 | 4 | 4 | 5' TCATGGTCGTGATCGTGGTCATC 3' |||| ||||| |||o| o||||| 3' TAGTAGTAGCAGCAGTAGTAGTAGTAGAGGTA 5' |
368 | Arabidopsis thaliana | TTCGCTTGCAGAGAGAAATCAC | alignment | plot | GSM278370-4061 | AT2G39681.1 cdna:known chromosome:TAIR10:2:16539384:16540417:-1 gene:AT2G39681 transcript:AT2G39681.1 | 2 | 418 | 0 | 55 | 55 | 1.5 | 5' TTCGCTTGCAGAGAGAAATCAC 3' |||||||| |||||o||||||| 3' TAGTAAGCGAACCTCTCTTTTTAGTGTTTTGG 5' |
369 | Arabidopsis thaliana | CAAGCACAACATATCCTCTT | alignment | plot | GSM278370-4061 | AT5G13030.1 cdna:known chromosome:TAIR10:5:4133204:4136688:1 gene:AT5G13030 transcript:AT5G13030.1 | 1 | 15 | 0 | 4 | 4 | 4 | 5' CAAGC-ACAACATATCCTCTT 3' || || ||||||| || |||| 3' TGTGTGCGTTGTTGTAAAGAAGAAGGAA 5' |
370 | Arabidopsis thaliana | TCATCTTCATCATCATCATCT | alignment | plot | GSM278370-4061 | AT4G38480.1 cdna:known chromosome:TAIR10:4:18003916:18006140:1 gene:AT4G38480 transcript:AT4G38480.1 | 0 | 1408 | 0.02 | 3 | 0.3 | 1.5 | 5' TCATCTTCATCATCATCATCT 3' ||||| ||||||||||||||o 3' GAGTAGTAGTAGTAGTAGTAGTAGGGGTACTA 5' |
371 | Arabidopsis thaliana | CTCTCTTTCTCCATGGCTGAC | alignment | plot | GSM278370-4061 | AT1G79550.1 cdna:known chromosome:TAIR10:1:29924023:29926442:-1 gene:AT1G79550 transcript:AT1G79550.1 | 2 | 914 | 0.04 | 5 | 2.5 | 3.5 | 5' CTCT-CTTTCTCCATGGCTGAC 3' || | |||||||||||o |||| 3' CCGGAAACGAAAGAGGTACTCACTGAAACGGT 5' |
372 | Arabidopsis thaliana | TTAGATTCACGCACAAACTCG | alignment | plot | GSM278370-4061 | AT1G31280.1 cdna:known chromosome:TAIR10:1:11181711:11185344:1 gene:AT1G31280 transcript:AT1G31280.1 | 0 | 3233 | 0 | 27 | 27 | 1 | 5' TTAGATTCACGCACAAACTCG 3' |||||||||||||||||||| 3' GGTTAATCTAAGTGCGTGTTTGAGGAAAGATG 5' |
373 | Arabidopsis thaliana | TCCAAAGGGATCGCATTGATCC | alignment | plot | GSM278370-4061 | AT1G12820.1 cdna:known chromosome:TAIR10:1:4368760:4371293:-1 gene:AT1G12820 transcript:AT1G12820.1 | 0 | 1895 | 0 | 23 | 23 | 2 | 5' TCCAAAGGGATCGCATTGATCC 3' |||||||||||||||||| | | 3' CTGTAGGTTTCCCTAGCGTAACAAAGCATGGA 5' |
374 | Arabidopsis thaliana | ACCGTCGAGAATTTTGGAGAA | alignment | plot | GSM278370-4061 | AT5G23160.1 cdna:known chromosome:TAIR10:5:7795256:7796346:-1 gene:AT5G23160 transcript:AT5G23160.1 | 1 | 887 | 0 | 10 | 10 | 4 | 5' ACCGTCGAGAATTTTGGAGAA 3' |||o||o||| ||| o||o|| 3' AATGTGGTAGTTCT-AAACTCTTTTATTTATT 5' |
375 | Arabidopsis thaliana | AAAGTCGCAATTCCCTTGCAACA | alignment | plot | GSM278370-4061 | AT5G67030.2 cdna:known chromosome:TAIR10:5:26753522:26757236:-1 gene:AT5G67030 transcript:AT5G67030.2 | 2 | 955 | 0.01 | 2 | 1 | 4 | 5' AAAGTC-GCAATTCCCTTGCAACA 3' |||o|| |||||o||| || |||| 3' ATATTTTAGACGTTAGGGGCACATTGTTCACA 5' |
376 | Arabidopsis thaliana | TGACAGAAGAAAGAGAGCAC | alignment | plot | GSM278370-4061 | AT3G15270.1 cdna:known chromosome:TAIR10:3:5140365:5141348:-1 gene:AT3G15270 transcript:AT3G15270.1 | 0 | 655 | 0.02 | 41 | 41 | 3 | 5' TGACAGAAGAAAGAGAGCAC 3' |||||||||| ||||||| 3' ATCTACTGTCTTCTCTCTCTCGCCCTCCCAAA 5' |
377 | Arabidopsis thaliana | TTCGAGGCCTATTAAACCTCTG | alignment | plot | GSM278370-4061 | AT5G54770.1 cdna:known chromosome:TAIR10:5:22246592:22248332:1 gene:AT5G54770 transcript:AT5G54770.1 | 2 | 1179 | 0.01 | 15 | 15 | 4 | 5' TTCGAGGCCTATTAAACCTCTG 3' |||o||o| |||||||| o||o 3' TTTCAAGTTCTGTATAATTTGTGGATTTGAGG 5' |
378 | Arabidopsis thaliana | AGAGATACGACGGAGATGGA | alignment | plot | GSM278370-4061 | AT5G39471.1 cdna:known chromosome:TAIR10:5:15793965:15795596:-1 gene:AT5G39471 transcript:AT5G39471.1 | 1 | 498 | 0.04 | 2 | 2 | 4 | 5' AGAGATACGACGGAGATGGA 3' |||||||||| || ||| | 3' GTACTCTCTATGCTACCAGTAC-TGCCAACTA 5' |
379 | Arabidopsis thaliana | GTGACGGTGGGACGAATGTT | alignment | plot | GSM278370-4061 | AT4G34830.1 cdna:known chromosome:TAIR10:4:16599605:16606027:-1 gene:AT4G34830 transcript:AT4G34830.1 | 0 | 3429 | 0 | 31 | 31 | 4 | 5' GTGACGGTGGGACGAATGTT 3' |o|||| | ||| |||||o| 3' ACGACGCTGCGA-CCTCCTTACGACACTACAT 5' |
380 | Arabidopsis thaliana | GAGGTGAAGACACTCGGCCTCG | alignment | plot | GSM278370-4061 | AT5G32510.2 cdna:pseudogene chromosome:TAIR10:5:12138752:12139374:-1 gene:AT5G32510 transcript:AT5G32510.2 | 1 | 188 | 0 | 3 | 3 | 2 | 5' GAGGTGAAGACACTCGGCCTCG 3' ||||||||||||| ||o||||o 3' CTACCTCCACTTCTGTGTGCTGGAGTACCAGC 5' |
381 | Arabidopsis thaliana | AAACGACGTCGTTTCGTTCT | alignment | plot | GSM278370-4061 | AT1G75750.1 cdna:known chromosome:TAIR10:1:28441526:28442367:-1 gene:AT1G75750 transcript:AT1G75750.1 | 2 | 419 | 0.02 | 7 | 3.5 | 3 | 5' AAACGACGTCGTTTCGTTCT 3' |||||||o||||oo|o|| | 3' TTGTTTTGCTGTAGCAGGGTAATAGGCGTCGT 5' |
382 | Arabidopsis thaliana | GGCGCCTCTCCATTGGCAGG | alignment | plot | GSM278370-4061 | AT5G13370.1 cdna:known chromosome:TAIR10:5:4286819:4289554:1 gene:AT5G13370 transcript:AT5G13370.1 | 2 | 416 | 0.01 | 7 | 1.75 | 3.5 | 5' GGCGCCTCTCCATTGGCAGG 3' |o|| |||||||||o|| |o 3' TAGTCTGCCGAGAGGTAATCG-CTATGCCAGC 5' |
383 | Arabidopsis thaliana | GGAATCTTGATGATGCTGCAT | alignment | plot | GSM278370-4061 | AT4G36920.1 cdna:known chromosome:TAIR10:4:17400847:17403332:1 gene:AT4G36920 transcript:AT4G36920.1 | 0 | 1340 | 0 | 18 | 9 | 2 | 5' GGAATCTTGATGATGCTGCAT 3' o|||||o||||||||||||| 3' CCTCTCTTAGGACTACTACGACGTCGTAAACA 5' |
384 | Arabidopsis thaliana | GATTCTTCTGAGCTAGCCTC | alignment | plot | GSM278370-4061 | AT5G04140.1 cdna:known chromosome:TAIR10:5:1129852:1138442:1 gene:AT5G04140 transcript:AT5G04140.1 | 2 | 2607 | 0.05 | 3 | 1.5 | 3.5 | 5' GATTCTTCTGAGCTAGCCTC 3' o |||||||||||| || || 3' CACATCAAGAAGACTCGAACG-AGTTACCAAT 5' |
385 | Arabidopsis thaliana | GGCGCCTCTCCATTGGCAGG | alignment | plot | GSM278370-4061 | AT5G19090.1 cdna:known chromosome:TAIR10:5:6387489:6390024:1 gene:AT5G19090 transcript:AT5G19090.1 | 0 | 1458 | 0 | 5 | 1.66667 | 3.5 | 5' GGCGCCTCTCCATTGGCAGG 3' o |||||| |||||||| || 3' GTGGTGGCGGAG-GGTAACCGGCCTTTGGACC 5' |
386 | Arabidopsis thaliana | GGATTTGCTTACTTTGGCCTT | alignment | plot | GSM278370-4061 | AT3G09260.1 cdna:known chromosome:TAIR10:3:2840477:2843781:-1 gene:AT3G09260 transcript:AT3G09260.1 | 2 | 1277 | 0 | 8 | 8 | 3 | 5' GGATTTGCTTACTTTGGCCTT 3' |||||||| || |||| |||| 3' AAGGCCTAAACGCAT-AAACAGGAATTACATG 5' |
387 | Arabidopsis thaliana | GGCGCCTCTCCATTGGCAGG | alignment | plot | GSM278370-4061 | AT5G13360.2 cdna:known chromosome:TAIR10:5:4283762:4286229:1 gene:AT5G13360 transcript:AT5G13360.2 | 0 | 282 | 0 | 7 | 1.75 | 3 | 5' GGCGCCTCTCCATTGGCAGG 3' |o|| |||||||||||| |o 3' TAGTCTGCCGAGAGGTAACCG-CTATGCTAGC 5' |
388 | Arabidopsis thaliana | ACTCGACCACGAAGTCGAGT | alignment | plot | GSM278370-4061 | AT1G13440.2 cdna:known chromosome:TAIR10:1:4608196:4610647:-1 gene:AT1G13440 transcript:AT1G13440.2 | 2 | 448 | 0.03 | 6 | 2 | 3.5 | 5' ACTCGACCACGAAGTCGAGT 3' ||||o|| ||o||||| ||o 3' CATCTGAGTTGTTGTTTCAG-TCGAGGTCGGA 5' |
389 | Arabidopsis thaliana | GACGGTGTCGATCGACACTG | alignment | plot | GSM278370-4061 | AT5G67440.1 cdna:known chromosome:TAIR10:5:26912707:26916294:-1 gene:AT5G67440 transcript:AT5G67440.1 | 2 | 2307 | 0.04 | 4 | 2 | 4 | 5' GACGGTGTCGATCGA-CACTG 3' |||||o|||||| | |||o| 3' TCAGCTGCCGCAGCTAAATAGTGGCTGCCATC 5' |
390 | Arabidopsis thaliana | CATCCAAGGTGTTTGTAGAAA | alignment | plot | GSM278370-4061 | AT4G17890.1 cdna:known chromosome:TAIR10:4:9937022:9939493:1 gene:AT4G17890 transcript:AT4G17890.1 | 2 | 383 | 0.03 | 2 | 1 | 3.5 | 5' CATCCAAGGTGTTTGTAGAAA 3' |||||| | ||o||| ||||| 3' TCAGGTAGGTACAACGAACTTCTTTTGGACTC 5' |
391 | Arabidopsis thaliana | TTCCACAGCTTTCTTGAACTT | alignment | plot | GSM278370-4061 | AT2G22840.1 cdna:known chromosome:TAIR10:2:9728756:9731301:1 gene:AT2G22840 transcript:AT2G22840.1 | 2 | 792 | 0.03 | 39 | 39 | 3 | 5' TTCCACA-GCTTTCTTGAACTT 3' ||||||| |||||||||||| 3' CGGAAGGTGTCCGAAAGAACTTGCTACCGCCG 5' |
392 | Arabidopsis thaliana | GATTCTTCTGAGCTAGCCTC | alignment | plot | GSM278370-4061 | AT1G70610.1 cdna:known chromosome:TAIR10:1:26621961:26626503:1 gene:AT1G70610 transcript:AT1G70610.1 | 1 | 1047 | 0.01 | 10 | 10 | 4 | 5' GATTCTTCTGAGCTAGCCTC 3' || |||o||||o |||| || 3' GACACT-AGAGGACTTAATCGAAGCGACAGAA 5' |
393 | Arabidopsis thaliana | ACTCGACCTGGAGGTCGAGTG | alignment | plot | GSM278370-4061 | AT1G07930.1 cdna:known chromosome:TAIR10:1:2458244:2460790:1 gene:AT1G07930 transcript:AT1G07930.1 | 2 | 212 | 0.04 | 3 | 0.6 | 4 | 5' ACTCGACCTGGAGGTCGAGTG 3' ||o|o|| || ||o||o|||| 3' ATGGTGGGTTGAACATCTAGTTCACAGGTCAC 5' |
394 | Arabidopsis thaliana | TCAATGCATTGAAAGTGACTA | alignment | plot | GSM278370-4061 | AT1G63330.1 cdna:known chromosome:TAIR10:1:23489840:23491519:1 gene:AT1G63330 transcript:AT1G63330.1 | 0 | 775 | 0 | 9 | 2.25 | 1 | 5' TCAATGCATTGAAAGTGACTA 3' ||||||||||||| ||||||| 3' AGCTAGTTACGTAACTTGCACTGATTTAATCC 5' |
395 | Arabidopsis thaliana | TGACAGAAGAAAGAGAGCAC | alignment | plot | GSM278370-4061 | AT5G43270.2 cdna:known chromosome:TAIR10:5:17360305:17363773:-1 gene:AT5G43270 transcript:AT5G43270.2 | 0 | 1159 | 0 | 20 | 5.08333 | 1 | 5' TGACAGAAGAAAGAGAGCAC 3' |||||||||| ||||||||| 3' TTAAACTGTCTTCTCTCTCTCGTGGTAGTTCT 5' |
396 | Arabidopsis thaliana | GAGCATTGTGGAGATCAAAT | alignment | plot | GSM278370-4061 | AT1G65060.2 cdna:known chromosome:TAIR10:1:24167202:24171502:-1 gene:AT1G65060 transcript:AT1G65060.2 | 2 | 1951 | 0 | 27 | 13.5 | 2.5 | 5' GAGCATTGTGGAGATCAAAT 3' o||||||||||| | ||||| 3' GTGTTTCGTAACACCTAT-GTTTACTTGCAAA 5' |
397 | Arabidopsis thaliana | TGCCTGGCTCCCTGTATGCC | alignment | plot | GSM278370-4061 | AT2G28350.1 cdna:known chromosome:TAIR10:2:12114331:12116848:1 gene:AT2G28350 transcript:AT2G28350.1 | 0 | 1340 | 0 | 25 | 25 | 1 | 5' TGCCTGGCTCCCTGTATGCC 3' ||||||||||||||||| || 3' TCGAACGGACCGAGGGACATAAGGACGTCCTC 5' |
398 | Arabidopsis thaliana | GGTGATGCCATCTACTCGAC | alignment | plot | GSM278370-4061 | AT3G16010.1 cdna:known chromosome:TAIR10:3:5434014:5436264:1 gene:AT3G16010 transcript:AT3G16010.1 | 2 | 1982 | 0.04 | 4 | 4 | 4 | 5' GGTGATGCCATC-TACTCGAC 3' o|||||| |||| |||||o| 3' TCATTCACTACCGTAGTATGAGTTTCGGAAAT 5' |
399 | Arabidopsis thaliana | TCGACCAGGGGGTCGAGTGAT | alignment | plot | GSM278370-4061 | AT1G70730.3 cdna:known chromosome:TAIR10:1:26669020:26673166:-1 gene:AT1G70730 transcript:AT1G70730.3 | 2 | 1913 | 0.05 | 3 | 1 | 4 | 5' TCGACCAGGGGGTCGAGTG-AT 3' ||o||||||||oo|o|| | || 3' TTGTAGTTGGTCCCCTGGTTCTCGTAGGACTC 5' |
400 | Arabidopsis thaliana | TTGACAGAAGATAGAGAGCAC | alignment | plot | GSM278370-4061 | AT5G43270.2 cdna:known chromosome:TAIR10:5:17360305:17363773:-1 gene:AT5G43270 transcript:AT5G43270.2 | 2 | 1160 | 0 | 9 | 3 | 1 | 5' TTGACAGAAGATAGAGAGCAC 3' ||||||||||| ||||||||| 3' CTTAAACTGTCTTCTCTCTCTCGTGGTAGTTC 5' |
401 | Arabidopsis thaliana | TTGGACTGAAGGGAGCTCC | alignment | plot | GSM278370-4061 | AT3G15030.2 cdna:known chromosome:TAIR10:3:5061681:5064038:1 gene:AT3G15030 transcript:AT3G15030.2 | 2 | 1487 | 0.01 | 12 | 4 | 2.5 | 5' TTGGACTGAAGGGAGCTCC 3' o|||||||||||| o|o|| 3' CATTGACCTGACTTCCCCTGGGGAGACTCTTA 5' |
402 | Arabidopsis thaliana | TTGGACTGAAGGGAGCTCCCT | alignment | plot | GSM278370-4061 | AT3G15030.2 cdna:known chromosome:TAIR10:3:5061681:5064038:1 gene:AT3G15030 transcript:AT3G15030.2 | 2 | 1487 | 0.01 | 12 | 4 | 3.5 | 5' TTGGACTGAAGGGAGCTCCCT 3' o|||||||||||| o|o|| | 3' CATTGACCTGACTTCCCCTGGGG-AGACTCTT 5' |
403 | Arabidopsis thaliana | TAGAAGGGAGTGAGTTCTCG | alignment | plot | GSM278370-4061 | AT1G08930.2 cdna:known chromosome:TAIR10:1:2873465:2877270:1 gene:AT1G08930 transcript:AT1G08930.2 | 2 | 1302 | 0.02 | 5 | 2.5 | 3 | 5' TAGAAGGGAGTGAGTTCTCG 3' ||| ||||||||||||| | 3' TCACTTCTACCCTCACTCAAGACCTTCTTACG 5' |
404 | Arabidopsis thaliana | GTTCCGGCGAGTCTGTTCCC | alignment | plot | GSM278370-4061 | AT3G26520.1 cdna:known chromosome:TAIR10:3:9722443:9723815:-1 gene:AT3G26520 transcript:AT3G26520.1 | 2 | 801 | 0.02 | 12 | 12 | 3.5 | 5' GTTCCGGCGAGTCTGTTCCC 3' o||||||||||||oooo || 3' CTATTAAGGCCGCTCAGGTGGTGGTTATTCTC 5' |
405 | Arabidopsis thaliana | TGTTGCCGTAGCTGCAGCGGC | alignment | plot | GSM278370-4061 | AT3G16100.1 cdna:known chromosome:TAIR10:3:5459172:5460790:1 gene:AT3G16100 transcript:AT3G16100.1 | 0 | 686 | 0 | 31 | 31 | 4 | 5' TGTTGCCGTAGCTGCAGCGGC 3' |||||||| |||o |||| o| 3' AGAAACAACGGC-TCGGGGTCGATGTAGTTAC 5' |
406 | Arabidopsis thaliana | ACCATCAATTCATCGTGGCCG | alignment | plot | GSM278370-4061 | AT4G18120.1 cdna:known chromosome:TAIR10:4:10038126:10042248:1 gene:AT4G18120 transcript:AT4G18120.1 | 0 | 2608 | 0 | 21 | 10.5 | 4 | 5' ACCATCAATTCATCGTGGCCG 3' |||||||||||| |o|| | o 3' GTGTTGGTAGTTAAGT-GTACAGATCTTGTTA 5' |
407 | Arabidopsis thaliana | TCTATCTTCTTCGTCTTCGAT | alignment | plot | GSM278370-4061 | AT4G14380.1 cdna:known chromosome:TAIR10:4:8285766:8286772:1 gene:AT4G14380 transcript:AT4G14380.1 | 0 | 457 | 0.04 | 22 | 11 | 4 | 5' TCTATCTTCTTCGTCTTCGAT 3' ||| |||||||| ||||| | 3' AAGAAGA-AGAAGAAGAAGAAGAAAAACGAGA 5' |
408 | Arabidopsis thaliana | TTGTTCCCCTCCTAAAGGAT | alignment | plot | GSM278370-4061 | AT1G48410.2 cdna:known chromosome:TAIR10:1:17886098:17892586:-1 gene:AT1G48410 transcript:AT1G48410.2 | 2 | 3019 | 0.03 | 7 | 2.33333 | 3.5 | 5' TTGTTCCCCTCCTAAAGGAT 3' |||||| | |||o||||o|o 3' TTTCAACAAGAGTAGGGTTTCTTGCACCATTA 5' |
409 | Arabidopsis thaliana | CCTCGCAAAAGTTGCGAGGGAT | alignment | plot | GSM278370-4061 | AT3G19170.1 cdna:known chromosome:TAIR10:3:6625421:6632033:-1 gene:AT3G19170 transcript:AT3G19170.1 | 2 | 3376 | 0.04 | 4 | 1.7 | 4 | 5' CCTCGCAAAAGTTGCGAGGGAT 3' ||||| |||||||| ||| | | 3' AAGTGGAGCTTTTTCAAC-CTCGCAAGTAACA 5' |
410 | Arabidopsis thaliana | CTATCATCATCATCCTCGTAA | alignment | plot | GSM278370-4061 | AT1G16150.1 cdna:known chromosome:TAIR10:1:5532415:5534877:1 gene:AT1G16150 transcript:AT1G16150.1 | 0 | 2198 | 0.04 | 3 | 0.3 | 3.5 | 5' CTATCATCATCATCCTCGTAA 3' | |||||||||||| ||o| | 3' AGTAG-TAGTAGTAGTAGTAGTAGTAGTAGTA 5' |
411 | Arabidopsis thaliana | GGTCGAGTGAAGTGATCGAGT | alignment | plot | GSM278370-4061 | AT4G33010.1 cdna:known chromosome:TAIR10:4:15926670:15931332:-1 gene:AT4G33010 transcript:AT4G33010.1 | 2 | 3409 | 0.05 | 4 | 2 | 4 | 5' GGTCGAGTGAAGTGATCGAGT 3' o ||||o||||o|o|| |||| 3' TACATAAGCTTACTTTATTATCTCATTCTCTG 5' |
412 | Arabidopsis thaliana | TCAATGCATTGAAAGTGACTA | alignment | plot | GSM278370-4061 | AT4G24230.1 cdna:known chromosome:TAIR10:4:12566631:12568821:-1 gene:AT4G24230 transcript:AT4G24230.1 | 0 | 1316 | 0.02 | 4 | 0.8 | 4 | 5' TCAATGCATT-GAAAGTGACTA 3' ||||||||o| |||| oo||o| 3' TATTAGTTACGTGATCTTTAGTTGGTCAGGAG 5' |
413 | Arabidopsis thaliana | TCCTCCACCACCGAGAGCATT | alignment | plot | GSM278370-4061 | AT2G32690.1 cdna:known chromosome:TAIR10:2:13863717:13864596:-1 gene:AT2G32690 transcript:AT2G32690.1 | 2 | 615 | 0.04 | 26 | 6.5 | 3.5 | 5' TCCTCCACCACCGAGAGCATT 3' |||||||||||| |o || || 3' CTGGAGGAGGTGGTGG-TTACGGAAATGGTTT 5' |
414 | Arabidopsis thaliana | TGATTGAGCCGTGTCAATATC | alignment | plot | GSM278370-4061 | AT2G45160.1 cdna:known chromosome:TAIR10:2:18617862:18620150:-1 gene:AT2G45160 transcript:AT2G45160.1 | 0 | 1014 | 0 | 26 | 26 | 1 | 5' TGATTGAGCCGTGTCAATATC 3' |||||||||||o|o||||||| 3' TACCACTAACTCGGCGCGGTTATAGGGAACGC 5' |
415 | Arabidopsis thaliana | AAACGACGTCGTTTCGTTCT | alignment | plot | GSM278370-4061 | AT5G61400.1 cdna:known chromosome:TAIR10:5:24681550:24683514:1 gene:AT5G61400 transcript:AT5G61400.1 | 1 | 675 | 0.03 | 4 | 4 | 4 | 5' AAACGACGTCGTTTCGTTCT 3' |||||||||o||||o| | 3' AGGGATTGCTGCAGTAAAGTA-GTTCTTCAAA 5' |
416 | Arabidopsis thaliana | TTGAGCCGTGCCAATATCACG | alignment | plot | GSM278370-4061 | AT2G45160.1 cdna:known chromosome:TAIR10:2:18617862:18620150:-1 gene:AT2G45160 transcript:AT2G45160.1 | 2 | 1011 | 0 | 10 | 10 | 2.5 | 5' TTGAGCCGTGCCAATATCACG 3' ||||||||o||||||||| | 3' CACTAACTCGGCGCGGTTATAGGGAACGCGCT 5' |
417 | Arabidopsis thaliana | ACATCATCATCATCATCTTCC | alignment | plot | GSM278370-4061 | AT5G52300.1 cdna:known chromosome:TAIR10:5:21237056:21239529:1 gene:AT5G52300 transcript:AT5G52300.1 | 2 | 346 | 0.01 | 5 | 2.5 | 1 | 5' ACATCATCATCATCATCTTCC 3' || |||||||||||||||||| 3' AGTATG-AGTAGTAGTAGTAGAAGGTGTAGCA 5' |
418 | Arabidopsis thaliana | CACATCAGACGGTTGAGTTGCT | alignment | plot | GSM278370-4061 | AT3G11890.2 cdna:known chromosome:TAIR10:3:3755542:3757775:1 gene:AT3G11890 transcript:AT3G11890.2 | 2 | 1777 | 0.04 | 3 | 3 | 4 | 5' CACATCAGACGGTTGAGTTGCT 3' |||||||o||o|| || ||| | 3' ACTAGTGTAGTTTGTCACCT-AACAACGAGAC 5' |
419 | Arabidopsis thaliana | TCCATGAAATGCCATGAGAG | alignment | plot | GSM278370-4061 | AT1G77550.1 cdna:known chromosome:TAIR10:1:29138299:29143011:-1 gene:AT1G77550 transcript:AT1G77550.1 | 1 | 1269 | 0.02 | 5 | 5 | 4 | 5' TCCATGAAATGCCATGAGAG 3' ||||| | ||o||||o| || 3' AAGTAGGTAGTGTATGGTATT-TCTTCAAAGT 5' |
420 | Arabidopsis thaliana | TCTGCATGCTCCTTGTTGATG | alignment | plot | GSM278370-4061 | AT2G14610.1 cdna:known chromosome:TAIR10:2:6241704:6242463:-1 gene:AT2G14610 transcript:AT2G14610.1 | 0 | 592 | 0.01 | 29 | 29 | 4 | 5' TCTGCATGCTCCTTGTTGATG 3' | || |||||||||o|||| o 3' ACGTATAC-TACGAGGAATAACTTTATGACTA 5' |
421 | Arabidopsis thaliana | GGAATCTTGATGATGCTGCAT | alignment | plot | GSM278370-4061 | AT5G60120.2 cdna:known chromosome:TAIR10:5:24207689:24211743:1 gene:AT5G60120 transcript:AT5G60120.2 | 1 | 1821 | 0 | 5 | 2.5 | 1 | 5' GGAATCTTGATGATGCTGCAT 3' o|||||o|||||||||||||| 3' TCACTCTTAGGACTACTACGACGTAAACTTTT 5' |
422 | Arabidopsis thaliana | GAGCATTGTGGAGATCAAAT | alignment | plot | GSM278370-4061 | AT1G34550.1 cdna:known chromosome:TAIR10:1:12646696:12652646:-1 gene:AT1G34550 transcript:AT1G34550.1 | 2 | 2113 | 0.05 | 2 | 2 | 3 | 5' GAGCATTGTGGAGATCAAAT 3' ||o|| ||||o|||| |||| 3' GGAACTTGT-ACACTTCTAATTTACCAAATAG 5' |
423 | Arabidopsis thaliana | TCCAGTGTCGATCGACACTAG | alignment | plot | GSM278370-4061 | AT4G23670.1 cdna:known chromosome:TAIR10:4:12332560:12333804:-1 gene:AT4G23670 transcript:AT4G23670.1 | 2 | 636 | 0.05 | 5 | 5 | 4 | 5' TCCAGTGTCGATCGACACTAG 3' | ||o|o|||||||| | ||| 3' TATTATGTTATAGCTAGCTCT-ATCACTACTG 5' |
424 | Arabidopsis thaliana | GTGAGTTTAGGGTTCTTGAA | alignment | plot | GSM278370-4061 | AT5G48810.1 cdna:known chromosome:TAIR10:5:19789067:19790334:-1 gene:AT5G48810 transcript:AT5G48810.1 | 0 | 77 | 0.03 | 21 | 21 | 4 | 5' GTGAGTTTAGGGTTCTTGAA 3' |||||||| ||o| |||o | 3' TAGACACTCAAACCCTA-GAATGTGGTTGGCG 5' |
425 | Arabidopsis thaliana | TAGCCAAGGATGACTTGCCTG | alignment | plot | GSM278370-4061 | AT5G06510.1 cdna:known chromosome:TAIR10:5:1984991:1987044:1 gene:AT5G06510 transcript:AT5G06510.1 | 2 | 1078 | 0 | 2 | 0.666667 | 2.5 | 5' TAGCCAAGGATGACTTGCCTG 3' ||||||o||||| ||||||| 3' CGTACTCGGTTTCTACTAAACGGACAAATGTC 5' |
426 | Arabidopsis thaliana | GTGAGTTTAGGGTTCTTGAA | alignment | plot | GSM278370-4061 | AT3G52230.1 cdna:known chromosome:TAIR10:3:19371213:19372687:1 gene:AT3G52230 transcript:AT3G52230.1 | 2 | 81 | 0 | 7 | 7 | 2 | 5' GTGAGTTTAGGGTTCTTGAA 3' ||||||||||||| ||||| 3' CTAAAACTCAAATCCCAA-AACTTAACTTAGC 5' |
427 | Arabidopsis thaliana | TCCTCCACCACCGAGAGCAT | alignment | plot | GSM278370-4061 | AT2G32690.4 cdna:known chromosome:TAIR10:2:13863717:13864596:-1 gene:AT2G32690 transcript:AT2G32690.4 | 2 | 528 | 0.05 | 26 | 6.5 | 3.5 | 5' TCCTCCACCACCGAGAGCAT 3' |||||||||||| |o || | 3' CTGGAGGAGGTGGTGG-TTACGGAAATGGTTT 5' |
428 | Arabidopsis thaliana | TATGAGAGTATTATAAGTCAC | alignment | plot | GSM278370-4061 | AT1G06580.1 cdna:known chromosome:TAIR10:1:2014003:2016054:-1 gene:AT1G06580 transcript:AT1G06580.1 | 2 | 1096 | 0 | 7 | 7 | 0 | 5' TATGAGAGTATTATAAGTCAC 3' ||||||||||||||||||||| 3' GTAAATACTCTCATAATATTCAGTGACGTAAA 5' |
429 | Arabidopsis thaliana | ATGCACTGCCTCTTCCCTGGC | alignment | plot | GSM278370-4061 | AT1G72230.1 cdna:known chromosome:TAIR10:1:27188066:27189244:1 gene:AT1G72230 transcript:AT1G72230.1 | 2 | 824 | 0.04 | 4 | 4 | 4 | 5' ATGCACTGCCTCTTCCCTGGC 3' | ||||||||||| ||||| 3' ATTGT-CGTGACGGAGATCGGACCAGGAAGTT 5' |
430 | Arabidopsis thaliana | TATTCGACCCCCAGGTCGAG | alignment | plot | GSM278370-4061 | AT2G44060.2 cdna:known chromosome:TAIR10:2:18226319:18228151:1 gene:AT2G44060 transcript:AT2G44060.2 | 2 | 753 | 0.03 | 41 | 20.5 | 3.5 | 5' TATTCGACCCCCAGGTCGAG 3' o||| || |||||o|||||o 3' TTCAGTAA-CTCGGGGTTCAGCTTTAGTAAGT 5' |
431 | Arabidopsis thaliana | TTTGGATTGAAGGGAGCTCTT | alignment | plot | GSM278370-4061 | AT3G11440.1 cdna:known chromosome:TAIR10:3:3602093:3605104:1 gene:AT3G11440 transcript:AT3G11440.1 | 2 | 1166 | 0.05 | 12 | 6.75 | 3.5 | 5' TTTGGATTGAAGGGAGCTCTT 3' ||||| ||||||||||||o 3' CTTATAACCTTACTTCCCTCGAGGTCGAAGTG 5' |
432 | Arabidopsis thaliana | GTAGTGTCGGTCGACACTGA | alignment | plot | GSM278370-4061 | AT2G07733.1 cdna:pseudogene chromosome:TAIR10:2:3470315:3471873:-1 gene:AT2G07733 transcript:AT2G07733.1 | 2 | 413 | 0 | 2 | 2 | 3 | 5' GTAGTGTCGGTCG-ACACTGA 3' ||||||||||||| ||| | | 3' GATGCATCACAGCCAGCGTGTAAGTTGTATCG 5' |
433 | Arabidopsis thaliana | GAAGTTGCGGTGAAGCGGCT | alignment | plot | GSM278370-4061 | AT3G60280.1 cdna:known chromosome:TAIR10:3:22279664:22280675:-1 gene:AT3G60280 transcript:AT3G60280.1 | 2 | 104 | 0.01 | 2 | 2 | 3.5 | 5' GAAGTTGCGGTGAAG-CGGCT 3' o|||||||||oo||| |||| 3' GAACTTTCAACGCCGTTTCTGCCGTCCCTGAC 5' |
434 | Arabidopsis thaliana | CTGAAGTGTTTGGGGGGACTC | alignment | plot | GSM278370-4061 | AT3G22890.1 cdna:known chromosome:TAIR10:3:8112723:8114992:1 gene:AT3G22890 transcript:AT3G22890.1 | 2 | 453 | 0.01 | 3 | 3 | 3 | 5' CTGAAGTGTTTGGGGGGACTC 3' ||||| ||||||o||o|||| 3' ATTTTACTTCTCAAACCTCCTTGAGCCTAAGA 5' |
435 | Arabidopsis thaliana | CTGGTTTAGTCACTTTCACTG | alignment | plot | GSM278370-4061 | AT1G47128.1 cdna:known chromosome:TAIR10:1:17282825:17285670:-1 gene:AT1G47128 transcript:AT1G47128.1 | 2 | 577 | 0 | 12 | 12 | 3 | 5' CTGGTTTAGTCACTTTCACTG 3' |||||||| || |o|o||||| 3' GCTAGACCAAATAAG-GGAGGTGACGAGGTTA 5' |
436 | Arabidopsis thaliana | CATCCAAGGTGTTTGTAGAAA | alignment | plot | GSM278370-4061 | AT1G09750.1 cdna:known chromosome:TAIR10:1:3157501:3159148:1 gene:AT1G09750 transcript:AT1G09750.1 | 0 | 1494 | 0 | 37 | 37 | 4 | 5' CATCCAAGGTGTTTGTAGAAA 3' ||| |||o||o| ||||||| 3' GCAAGTATGTTTCATATACATCTTCCAGTTCG 5' |
437 | Arabidopsis thaliana | AAGCTCAGGAGGGATAGCGCC | alignment | plot | GSM278370-4061 | AT5G57735.1 cdna:known chromosome:TAIR10:5:23394005:23394500:1 gene:AT5G57735 transcript:AT5G57735.1 | 2 | 429 | 0.01 | 6 | 6 | 3 | 5' AAGCTCAGGAGGGATAGCGCC 3' ||||||||||||o|||| o | 3' GTATTTCGAGTCCTCCTTATCTTTGTTGTTTG 5' |
438 | Arabidopsis thaliana | TGCTCGATTGTCTGGTTGAG | alignment | plot | GSM278370-4061 | AT5G23820.1 cdna:known chromosome:TAIR10:5:8031268:8033020:1 gene:AT5G23820 transcript:AT5G23820.1 | 1 | 758 | 0.01 | 27 | 27 | 4 | 5' TGCTCGATTGTCTGGTTGAG 3' |||||||||| || ||| | 3' CTGTACGAGCTAAC-GAACAAGTATAGCGATA 5' |
439 | Arabidopsis thaliana | CTTCTCCAACATGGAGATTC | alignment | plot | GSM278370-4061 | AT2G26500.2 cdna:known chromosome:TAIR10:2:11270218:11270874:1 gene:AT2G26500 transcript:AT2G26500.2 | 2 | 407 | 0.05 | 9 | 3 | 3.5 | 5' CTTCTCCAACATGGAGATTC 3' ||||| ||||| |o|| ||| 3' AGTCGAAGAAGTTGT-CTTCAAAGCTAAGCTT 5' |
440 | Arabidopsis thaliana | TAGAAGGGAGTGAGTTCTCG | alignment | plot | GSM278370-4061 | AT5G38660.1 cdna:known chromosome:TAIR10:5:15473109:15475552:-1 gene:AT5G38660 transcript:AT5G38660.1 | 2 | 801 | 0.01 | 14 | 7 | 3 | 5' TAGAAGGGAGTGAGTTCTCG 3' ||||||o|||||o|| ||| 3' AGGTTTCTTCCTTCACTTAA-AGCGGACAGAA 5' |
441 | Arabidopsis thaliana | TGATTGAGCCGTGTCAATATC | alignment | plot | GSM278370-4061 | AT4G00150.1 cdna:known chromosome:TAIR10:4:57199:59286:-1 gene:AT4G00150 transcript:AT4G00150.1 | 0 | 867 | 0 | 156 | 156 | 1 | 5' TGATTGAGCCGTGTCAATATC 3' |||||||||||o|o||||||| 3' GACAACTAACTCGGCGCGGTTATAGGGGACTC 5' |
442 | Arabidopsis thaliana | TTGGCATTCTGTCCACCTCC | alignment | plot | GSM278370-4061 | AT3G12120.2 cdna:known chromosome:TAIR10:3:3860445:3862880:-1 gene:AT3G12120 transcript:AT3G12120.2 | 2 | 153 | 0.01 | 5 | 2.5 | 3 | 5' TTGGCATTCTGTCCACCTCC 3' oo|||||||| ||||||| | 3' CCTTGGCCGTAAGA-AGGTGGACGTGGGTACA 5' |
443 | Arabidopsis thaliana | TTGAGCCGTGCCAATATCACG | alignment | plot | GSM278370-4061 | AT4G00150.1 cdna:known chromosome:TAIR10:4:57199:59286:-1 gene:AT4G00150 transcript:AT4G00150.1 | 2 | 864 | 0 | 11 | 11 | 2.5 | 5' TTGAGCCGTGCCAATATCACG 3' ||||||||o||||||||| | 3' AACTAACTCGGCGCGGTTATAGGGGACTCGAT 5' |
444 | Arabidopsis thaliana | TGTGTTCTCAGGTCACCCCTT | alignment | plot | GSM278370-4061 | AT2G28190.1 cdna:known chromosome:TAIR10:2:12014498:12016569:1 gene:AT2G28190 transcript:AT2G28190.1 | 2 | 487 | 0.02 | 23 | 23 | 4 | 5' TGTGTTCTCAGGTCACCCCTT 3' ||| |||o|||||||||| o 3' AAATACA-AAGGGTCCAGTGGGCGTACTGCCG 5' |
445 | Arabidopsis thaliana | TCATGTTATGTGATTCTTCT | alignment | plot | GSM278370-4061 | AT1G03360.1 cdna:known chromosome:TAIR10:1:824537:826358:1 gene:AT1G03360 transcript:AT1G03360.1 | 1 | 1001 | 0.03 | 3 | 3 | 4 | 5' TCATGTTATGTGATTCTTCT 3' ||||| ||||| | | |||| 3' GTATAGTAC-ATACAGTTATAAGAAACTCAAT 5' |
446 | Arabidopsis thaliana | TCTGCATGCTCCTTGTTGATG | alignment | plot | GSM278370-4061 | AT4G05060.1 cdna:known chromosome:TAIR10:4:2590065:2592163:-1 gene:AT4G05060 transcript:AT4G05060.1 | 2 | 1009 | 0 | 7 | 7 | 3.5 | 5' TCTGCATGCTCCTTGTTGATG 3' |||o| | |||||||||| || 3' TCGCAGATG-AGGAGGAACAACAACACGTTCT 5' |
447 | Arabidopsis thaliana | GGCGGCGGCAAACTCTACTG | alignment | plot | GSM278370-4061 | AT2G13360.1 cdna:known chromosome:TAIR10:2:5539240:5541358:-1 gene:AT2G13360 transcript:AT2G13360.1 | 2 | 1306 | 0.05 | 4 | 2 | 4 | 5' GGCGGCGGCAAACTCTACTG 3' |||o|| |||| |||o||| 3' ATCTCCGTCGACGTT-GAGGTGAAGGGTAATG 5' |
448 | Arabidopsis thaliana | TGACAGAAGAAAGAGAGCAC | alignment | plot | GSM278370-4061 | AT3G57920.1 cdna:known chromosome:TAIR10:3:21444321:21446035:-1 gene:AT3G57920 transcript:AT3G57920.1 | 1 | 855 | 0 | 3 | 3 | 1 | 5' TGACAGAAGAAAGAGAGCAC 3' |||||||||| ||||||||| 3' TCAAACTGTCTTCTCTCTCTCGTGTCGAACTT 5' |
449 | Arabidopsis thaliana | TGGCGACGGTGGTGAGGACG | alignment | plot | GSM278370-4061 | AT1G79730.1 cdna:known chromosome:TAIR10:1:30000538:30004005:-1 gene:AT1G79730 transcript:AT1G79730.1 | 2 | 1167 | 0.05 | 9 | 9 | 3.5 | 5' TGGCGACGGTGGTGAGGACG 3' ||||o||o||||| ||o|| 3' TTATACCGTTGTCACCA-TCTTGAAGTTGGCC 5' |
450 | Arabidopsis thaliana | TCGTGGCCGATCTGCTGAGG | alignment | plot | GSM278370-4061 | AT5G19780.1 cdna:known chromosome:TAIR10:5:6687074:6689171:1 gene:AT5G19780 transcript:AT5G19780.1 | 2 | 1310 | 0.05 | 3 | 1.5 | 4 | 5' TCGTGGCCGATCTGCTGAGG 3' | |||| |||||o| ||||o 3' TTTGAACACCAGCTAGGC-ACTCTTGTGGAGA 5' |
451 | Arabidopsis thaliana | TCGAGCACATGACATCCAGA | alignment | plot | GSM278370-4061 | AT1G67340.1 cdna:known chromosome:TAIR10:1:25230265:25231840:1 gene:AT1G67340 transcript:AT1G67340.1 | 0 | 867 | 0.02 | 6 | 6 | 4 | 5' TCGAGCACATGACATCCAGA 3' o|| | |||| |||||||o| 3' CCACGGC-CATGTAATGTAGGTTTTAGTGATT 5' |
452 | Arabidopsis thaliana | AGTGTAGTTGTTGCCGGAGA | alignment | plot | GSM278370-4061 | AT5G18430.1 cdna:known chromosome:TAIR10:5:6110255:6112029:-1 gene:AT5G18430 transcript:AT5G18430.1 | 1 | 235 | 0.03 | 2 | 2 | 4 | 5' AGTGTAGTTGTTGCCGGAGA 3' |||o||||||oo||o|| | 3' CCGTGCACGTCAACAGTGGTCTATCAACAACA 5' |
453 | Arabidopsis thaliana | TGTGTTCTCAGGTCACCCCTT | alignment | plot | GSM278370-4061 | AT3G27200.1 cdna:known chromosome:TAIR10:3:10043522:10044373:-1 gene:AT3G27200 transcript:AT3G27200.1 | 0 | 269 | 0 | 54 | 54 | 4 | 5' TG-TGTTCTCAGGTCACCCCTT 3' || |||||o|||||||| ||o 3' TTGACTACAAGGGTCCAGTGTTGAGAACATAC 5' |
454 | Arabidopsis thaliana | TGGCGACGGTGGTGAGGACGA | alignment | plot | GSM278370-4061 | AT1G29390.2 cdna:known chromosome:TAIR10:1:10286293:10288103:-1 gene:AT1G29390 transcript:AT1G29390.2 | 2 | 937 | 0.05 | 7 | 3.5 | 4 | 5' TGGCGACGGTGGTGAGGAC-GA 3' |||| ||o||||oo||o|| || 3' TAATACCGATGTCACCGTTCTTGACTTAAGAC 5' |
455 | Arabidopsis thaliana | TTCTTCCGCCGCTTGGAGTC | alignment | plot | GSM278370-4061 | AT2G23670.1 cdna:known chromosome:TAIR10:2:10063155:10063863:-1 gene:AT2G23670 transcript:AT2G23670.1 | 2 | 395 | 0.05 | 3 | 3 | 4 | 5' TTCTTCCGCCGCTTGGAGTC 3' o|| |||||||||| |o|| 3' TGGAGAG-AGGCGGCGAAGATTAGGAAAGAGG 5' |
456 | Arabidopsis thaliana | TGACAGAAGATAGAGAGCAC | alignment | plot | GSM278370-4061 | AT3G49780.1 cdna:known chromosome:TAIR10:3:18465679:18466376:1 gene:AT3G49780 transcript:AT3G49780.1 | 0 | 377 | 0.05 | 4 | 4 | 4 | 5' TGACAGAAGATAGAGAGCAC 3' o||||||o|o|||o|| || 3' TCTGCTTGTCTTTTGTCTTTCATGATGTCACT 5' |
457 | Arabidopsis thaliana | TTTCGTTGTCTGTTCGACCTT | alignment | plot | GSM278370-4061 | AT1G06180.1 cdna:known chromosome:TAIR10:1:1889408:1891158:1 gene:AT1G06180 transcript:AT1G06180.1 | 2 | 403 | 0.01 | 4 | 4 | 3 | 5' TTTCGTTGTCTGTTCGACCTT 3' |||||||||||||||| || 3' AATTAAAGCAACAGACAAGCAGGTCCGTTAAA 5' |
458 | Arabidopsis thaliana | GCTACCGGAGCATTCCATGC | alignment | plot | GSM278370-4061 | AT3G13460.2 cdna:known chromosome:TAIR10:3:4384714:4388477:-1 gene:AT3G13460 transcript:AT3G13460.2 | 2 | 2155 | 0.02 | 3 | 0.75 | 4 | 5' GCTACCGGAGCATTCCATGC 3' ||| | |||| ||||| ||| 3' TTGTCGACGTCCTC-TAAGGAACGAGCGACTG 5' |
459 | Arabidopsis thaliana | TGACAGAAGAGAGTTAGCAC | alignment | plot | GSM278370-4061 | AT2G33810.1 cdna:known chromosome:TAIR10:2:14305001:14306072:1 gene:AT2G33810 transcript:AT2G33810.1 | 2 | 797 | 0 | 4 | 4 | 2 | 5' TGACAGAAGAGAGTTAGCAC 3' |||||||||||||| |||| 3' TCTGACTGTCTTCTCTCATTCGTTTCGGACAA 5' |
460 | Arabidopsis thaliana | TGCCTGGCTCCCTGTATGCC | alignment | plot | GSM278370-4061 | AT1G77850.1 cdna:known chromosome:TAIR10:1:29272313:29275419:1 gene:AT1G77850 transcript:AT1G77850.1 | 0 | 1420 | 0 | 115 | 115 | 0.5 | 5' TGCCTGGCTCCCTGTATGCC 3' ||||||||||||||o||||| 3' TATAACGGACCGAGGGACGTACGGTCGTCCTT 5' |
461 | Arabidopsis thaliana | TCAATGCATTGAAAGTGACTA | alignment | plot | GSM278370-4061 | AT4G24230.4 cdna:known chromosome:TAIR10:4:12566944:12568767:-1 gene:AT4G24230 transcript:AT4G24230.4 | 0 | 1269 | 0.01 | 4 | 0.8 | 4 | 5' TCAATGCATT-GAAAGTGACTA 3' ||||||||o| |||| oo||o| 3' TATTAGTTACGTGATCTTTAGTTGGTCAGGAG 5' |
462 | Arabidopsis thaliana | TCAATGCATTGAAAGTGACTA | alignment | plot | GSM278370-4061 | AT5G41170.1 cdna:known chromosome:TAIR10:5:16478486:16480584:-1 gene:AT5G41170 transcript:AT5G41170.1 | 1 | 892 | 0 | 9 | 2.25 | 1 | 5' TCAATGCATTGAAAGTGACTA 3' |||||||||||||||||| || 3' AGCTAGTTACGTAACTTTCACTAATGTAGTCC 5' |
463 | Arabidopsis thaliana | GGAATCTTGATGATGCTGCAT | alignment | plot | GSM278370-4061 | AT3G54990.1 cdna:known chromosome:TAIR10:3:20373718:20376522:-1 gene:AT3G54990 transcript:AT3G54990.1 | 0 | 976 | 0 | 3 | 3 | 1.5 | 5' GGAATCTTGATGATGCTGCAT 3' ||||||o||||||||||||| 3' TTTCCCTTAGGACTACTACGACGTTGACAGAA 5' |
464 | Arabidopsis thaliana | TGAGAAGAAGAAGAAGAAAA | alignment | plot | GSM278370-4061 | AT3G48160.2 cdna:known chromosome:TAIR10:3:17783331:17786099:1 gene:AT3G48160 transcript:AT3G48160.2 | 2 | 1540 | 0.02 | 21 | 0.0318599 | 1.5 | 5' TGAGAAGAAGAAGAAGAAAA 3' o|||||||||||||||||| 3' TCTTCTTCTTCTTCTTCTTCTTTTTCTTCTAG 5' |
465 | Arabidopsis thaliana | CCGACCCGAATACCCGAACG | alignment | plot | GSM278370-4061 | AT5G57685.1 cdna:known chromosome:TAIR10:5:23366004:23366867:-1 gene:AT5G57685 transcript:AT5G57685.1 | 2 | 609 | 0 | 3 | 3 | 1.5 | 5' CCGACCCGAATACCCGAACG 3' ||o|||||||||||||| || 3' ACTAGGTTGGGCTTATGGGCT-GCGTTGGCCC 5' |
466 | Arabidopsis thaliana | TACCATCTCTTGAGGAACTTGG | alignment | plot | GSM278370-4061 | AT1G07920.1 cdna:known chromosome:TAIR10:1:2454846:2457321:1 gene:AT1G07920 transcript:AT1G07920.1 | 2 | 1261 | 0.01 | 7 | 1.4 | 3 | 5' TACCATCTCTTGAGGAACTTGG 3' o||||| |||| |o|||||||| 3' CGTAGTGGTA-AGAAGTTCTTGAACCCGAGGA 5' |
467 | Arabidopsis thaliana | TTGGACTGAAGGGAGCTCC | alignment | plot | GSM278370-4061 | AT1G53230.1 cdna:known chromosome:TAIR10:1:19849788:19851725:-1 gene:AT1G53230 transcript:AT1G53230.1 | 2 | 1195 | 0.01 | 4 | 4 | 3 | 5' TTGGACTGAAGGGAGCTCC 3' |||||||||||| o|o|| 3' CAATTACCTGACTTCCCCTGGGGAGACACTAT 5' |
468 | Arabidopsis thaliana | TTGGACTGAAGGGAGCTCCCT | alignment | plot | GSM278370-4061 | AT1G53230.1 cdna:known chromosome:TAIR10:1:19849788:19851725:-1 gene:AT1G53230 transcript:AT1G53230.1 | 2 | 1195 | 0.05 | 4 | 4 | 4 | 5' TTGGACTGAAGGGAGCTCCCT 3' |||||||||||| o|o|| | 3' CAATTACCTGACTTCCCCTGGGG-AGACACTA 5' |
469 | Arabidopsis thaliana | GACGAAGAAGATGGTGATGTGAT | alignment | plot | GSM278370-4061 | AT1G21380.1 cdna:known chromosome:TAIR10:1:7485636:7488713:-1 gene:AT1G21380 transcript:AT1G21380.1 | 2 | 1743 | 0.01 | 3 | 3 | 3.5 | 5' GACGAAGAAGATGGTGATGTGAT 3' || ||||||||||o|||||| | 3' AAACCTCCTTCTTCTACTACTACAGGACCAAA 5' |
470 | Arabidopsis thaliana | TGGTGTCGATCGACACCAAGG | alignment | plot | GSM278370-4061 | AT3G11830.2 cdna:novel chromosome:TAIR10:3:3732628:3736377:1 gene:AT3G11830 transcript:AT3G11830.2 | 2 | 1668 | 0.03 | 25 | 12.5 | 4 | 5' TGGTGTCGATCGACACCAAGG 3' o||| ||| ||||||| |||o 3' AAGTGCCAAAGC-AGCTGTGATTCTTACTCCG 5' |
471 | Arabidopsis thaliana | AGAGAAACCCAACAGCATCAT | alignment | plot | GSM278370-4061 | AT1G69160.1 cdna:known chromosome:TAIR10:1:26000214:26001588:1 gene:AT1G69160 transcript:AT1G69160.1 | 0 | 1181 | 0.02 | 18 | 18 | 4 | 5' AGAGAAACCCAACAGCATCAT 3' o|||||||||| |o||| || 3' TTAGGTTCTTTGGGTTTTTGTA-TATTGAATA 5' |
472 | Arabidopsis thaliana | TCGGACCAGGCTTCATTCCCC | alignment | plot | GSM278370-4061 | AT1G30490.1 cdna:known chromosome:TAIR10:1:10796135:10800961:-1 gene:AT1G30490 transcript:AT1G30490.1 | 2 | 806 | 0 | 23 | 11.5 | 2.5 | 5' TCGGACCAGGCTTCATTCCCC 3' o||||||||||||||| ||| 3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5' |
473 | Arabidopsis thaliana | TCGGACCAGGCTTCATCCCCC | alignment | plot | GSM278370-4061 | AT1G30490.1 cdna:known chromosome:TAIR10:1:10796135:10800961:-1 gene:AT1G30490 transcript:AT1G30490.1 | 2 | 806 | 0 | 23 | 11.5 | 2.5 | 5' TCGGACCAGGCTTCATCCCCC 3' o|||||||||||||||||| 3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAGAC 5' |
474 | Arabidopsis thaliana | AAACGACGTCGTTTCGTTCT | alignment | plot | GSM278370-4061 | AT3G24500.1 cdna:known chromosome:TAIR10:3:8918679:8919308:1 gene:AT3G24500 transcript:AT3G24500.1 | 2 | 530 | 0.04 | 4 | 2 | 3.5 | 5' AAACGACGTCGTTTCGTTCT 3' |||||||o|||||| o|o | 3' TCTATTTGCTGTAGCAAATTAGTAAAGGGTTA 5' |
475 | Arabidopsis thaliana | TGAAAGTGACTACATCGGGGT | alignment | plot | GSM278370-4061 | AT3G14067.1 cdna:known chromosome:TAIR10:3:4658198:4660784:-1 gene:AT3G14067 transcript:AT3G14067.1 | 2 | 1728 | 0.03 | 2 | 2 | 4 | 5' TGAAAGTGACTACATCGGGGT 3' || | |||||o| ||||||o| 3' AACGACGTCCACTGGT-TAGCCCTACTCGAAA 5' |
476 | Arabidopsis thaliana | GAGGAGGAGGAGCACCACCGT | alignment | plot | GSM278370-4061 | AT3G56340.1 cdna:known chromosome:TAIR10:3:20892129:20893443:-1 gene:AT3G56340 transcript:AT3G56340.1 | 2 | 473 | 0 | 9 | 9 | 3 | 5' GAGGAGGAGGAGCACCACCGT 3' ||| || ||||||||||||| 3' GCTCCTCGTCGTCCTCGTGGTGGCCGTCCCGC 5' |
477 | Arabidopsis thaliana | TACCATCTCTTGAGGAACTTGG | alignment | plot | GSM278370-4061 | AT1G07930.2 cdna:known chromosome:TAIR10:1:2458244:2460790:1 gene:AT1G07930 transcript:AT1G07930.2 | 2 | 1042 | 0.04 | 7 | 1.4 | 4 | 5' TACCATCTCTTGAGGAACTTGG 3' o||||| |||| |o||| |||| 3' CGTAGTGGTA-AGAAGTTCTTAAACCCGAGGA 5' |
478 | Arabidopsis thaliana | TGAAAGTGACTACATCGGGGT | alignment | plot | GSM278370-4061 | AT1G63230.1 cdna:known chromosome:TAIR10:1:23450654:23452311:1 gene:AT1G63230 transcript:AT1G63230.1 | 2 | 929 | 0.02 | 2 | 2 | 3 | 5' TGAAAGTGACTACATCGGGGT 3' ||||||| || |||||o||o| 3' CGTGACTTTCAATGTTGTAGTCCTAACTAAAC 5' |
479 | Arabidopsis thaliana | TGACAGAAGAAAGAGAGCAC | alignment | plot | GSM278370-4061 | AT1G69170.1 cdna:known chromosome:TAIR10:1:26005068:26007263:1 gene:AT1G69170 transcript:AT1G69170.1 | 2 | 1307 | 0 | 6 | 6 | 1 | 5' TGACAGAAGAAAGAGAGCAC 3' |||||||||| ||||||||| 3' CTCGACTGTCTTCTCTCTCTCGTGCTCATCTC 5' |
480 | Arabidopsis thaliana | TCGGACCAGGCTTCATTCCCC | alignment | plot | GSM278370-4061 | AT2G34710.1 cdna:known chromosome:TAIR10:2:14639323:14644273:-1 gene:AT2G34710 transcript:AT2G34710.1 | 2 | 881 | 0 | 28 | 16.5 | 2.5 | 5' TCGGACCAGGCTTCATTCCCC 3' o||||||||||||||| ||| 3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5' |
481 | Arabidopsis thaliana | TCGGACCAGGCTTCATCCCCC | alignment | plot | GSM278370-4061 | AT2G34710.1 cdna:known chromosome:TAIR10:2:14639323:14644273:-1 gene:AT2G34710 transcript:AT2G34710.1 | 2 | 881 | 0 | 28 | 16.5 | 2.5 | 5' TCGGACCAGGCTTCATCCCCC 3' o|||||||||||||||||| 3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAGAC 5' |
482 | Arabidopsis thaliana | TCAATGCATTGAAAGTGACTA | alignment | plot | GSM278370-4061 | AT4G24230.6 cdna:known chromosome:TAIR10:4:12566935:12568754:-1 gene:AT4G24230 transcript:AT4G24230.6 | 0 | 1255 | 0.03 | 4 | 0.8 | 4 | 5' TCAATGCATT-GAAAGTGACTA 3' ||||||||o| |||| oo||o| 3' TATTAGTTACGTGATCTTTAGTTGGTCAGGAG 5' |
483 | Arabidopsis thaliana | GAGAAGATGAAGCTGTTCTG | alignment | plot | GSM278370-4061 | AT3G56950.2 cdna:known chromosome:TAIR10:3:21078297:21079856:-1 gene:AT3G56950 transcript:AT3G56950.2 | 0 | 466 | 0.01 | 12 | 6 | 3.5 | 5' GAGAAGATGAAGCTGTTCTG 3' |||||||||||o|||o| o 3' CTGCCTCTTCTACTTTGACGACTTCGGTGGCC 5' |
484 | Arabidopsis thaliana | TCGGACCAGGCTTCATTCCCC | alignment | plot | GSM278370-4061 | AT3G48610.1 cdna:known chromosome:TAIR10:3:18011545:18014082:-1 gene:AT3G48610 transcript:AT3G48610.1 | 2 | 1621 | 0.01 | 2 | 2 | 3.5 | 5' TCGG-ACCAGGCTTCATTCCCC 3' |||| ||||o|||||||| || 3' AATAGCCGTGGTTCGAAGTAACGGAGAAATGA 5' |
485 | Arabidopsis thaliana | ACTCGACCACGAAGTCGAGT | alignment | plot | GSM278370-4061 | AT4G01320.1 cdna:known chromosome:TAIR10:4:545796:549261:1 gene:AT4G01320 transcript:AT4G01320.1 | 0 | 506 | 0 | 29 | 29 | 3 | 5' ACTCGACCACGAA-GTCGAGT 3' |||||| |||||| || |||| 3' GCTCTGAGCTAGTGCTTTCAACTCATGTTTCT 5' |
486 | Arabidopsis thaliana | CTATCATCATCATCCTCGTAA | alignment | plot | GSM278370-4061 | AT3G29075.1 cdna:known chromosome:TAIR10:3:11051489:11052694:-1 gene:AT3G29075 transcript:AT3G29075.1 | 2 | 784 | 0.02 | 20 | 4 | 3 | 5' CTATCATCATCATCCTCGTAA 3' | |||||||||||| | |||| 3' AAGAG-TAGTAGTAGTAGTAACATTAATACGA 5' |
487 | Arabidopsis thaliana | TCATCTTCATCATCATCGTCA | alignment | plot | GSM278370-4061 | AT2G31210.1 cdna:known chromosome:TAIR10:2:13296143:13298277:1 gene:AT2G31210 transcript:AT2G31210.1 | 1 | 1161 | 0.02 | 4 | 0.444444 | 3 | 5' TCATCTTCATCATCATCGTCA 3' |||||||||| |o||| o||| 3' TAGTAGTAGAAGTAATGGTACTAGTAGGTTCA 5' |
488 | Arabidopsis thaliana | TGAGAAGACTCTGAAGGTGTG | alignment | plot | GSM278370-4061 | AT1G75160.1 cdna:known chromosome:TAIR10:1:28209437:28211804:1 gene:AT1G75160 transcript:AT1G75160.1 | 0 | 909 | 0 | 5 | 5 | 4 | 5' TGAGAAGACTCTGAAGGTGTG 3' |||||| | ||||| ||||| 3' CGAAACTCTTAT-AGACTGCCACAAAGATGAA 5' |
489 | Arabidopsis thaliana | TTCGCTTGCAGAGAGAAATCAC | alignment | plot | GSM278370-4061 | AT2G39675.1 cdna:known chromosome:TAIR10:2:16537288:16538277:-1 gene:AT2G39675 transcript:AT2G39675.1 | 0 | 379 | 0 | 56 | 56 | 1.5 | 5' TTCGCTTGCAGAGAGAAATCAC 3' |||||||| |||||o||||||| 3' AGATAAGCGAACATCTCTTTTTAGTGTTGTTT 5' |
490 | Arabidopsis thaliana | CTGGGTTGTGATGTTCTGCA | alignment | plot | GSM278370-4061 | AT3G59920.1 cdna:known chromosome:TAIR10:3:22134999:22138457:1 gene:AT3G59920 transcript:AT3G59920.1 | 2 | 1121 | 0 | 3 | 3 | 3 | 5' CTGGGTTGTGATGTTCTGCA 3' ||||| |o||||| o||||| 3' CAAAGACCCCATACTACTGGACGTGACTCACT 5' |
491 | Arabidopsis thaliana | CGGCTCTGATACCAATTGATG | alignment | plot | GSM278370-4061 | AT2G40000.1 cdna:known chromosome:TAIR10:2:16700510:16702028:-1 gene:AT2G40000 transcript:AT2G40000.1 | 2 | 297 | 0.04 | 4 | 4 | 4 | 5' CGGCTCTGATACCAATTGATG 3' |||||||||| | ||||| | 3' CTTAGCCGAGACTACAGGTAACTCCTTTTAGT 5' |
492 | Arabidopsis thaliana | AAGAGAGAGGGTTTAAGGCTT | alignment | plot | GSM278370-4061 | AT5G02600.1 cdna:known chromosome:TAIR10:5:585101:586897:-1 gene:AT5G02600 transcript:AT5G02600.1 | 2 | 221 | 0.05 | 5 | 2.5 | 3 | 5' AAGAGAGAGGGTTTAAGGCTT 3' |||| |||||| |||||| || 3' CTGCTTCT-TCTCCCTAATTCCAAACCCCTTC 5' |
493 | Arabidopsis thaliana | TGCCTGGCTCCCTGTATGCC | alignment | plot | GSM278370-4061 | AT4G30080.1 cdna:known chromosome:TAIR10:4:14703201:14706336:-1 gene:AT4G30080 transcript:AT4G30080.1 | 1 | 1519 | 0 | 6 | 6 | 1.5 | 5' TGCCTGGCTCCCTGTATGCC 3' |||||||||||||||| o|| 3' TAATACGGACCGAGGGACATTTGGGTGCCCTT 5' |
494 | Arabidopsis thaliana | GAGAGGAGAGAGTCTTTGTT | alignment | plot | GSM278370-4061 | AT4G22670.1 cdna:known chromosome:TAIR10:4:11918080:11920910:1 gene:AT4G22670 transcript:AT4G22670.1 | 2 | 1610 | 0.02 | 12 | 12 | 2.5 | 5' GAGAGGAGAGAGTCTTTGTT 3' o||||o|o||||| |||||| 3' TTGCTTCTCTTTTCTCA-AAACAAGGACAATT 5' |
495 | Glycine max | CCGGAAGAGGAAAATTAAGCAA | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA12G12210.5 cdna:novel chromosome:V1.0:Gm12:10353968:10359433:-1 gene:GLYMA12G12210 transcript:GLYMA12G12210.5 | 2 | 1143 | 0.04 | 16 | 1.77778 | 3.5 | 5' CCGGAAGAGGAA-AATTAAGCAA 3' |o||||||||| |||||||| | 3' TACTCGTCTTCTCCTTCTTAATTCGATAACAA 5' |
496 | Glycine max | TTGACAGAAGATAGAGAGCAC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA02G13371.2 cdna:novel chromosome:V1.0:Gm02:11670695:11677264:-1 gene:GLYMA02G13371 transcript:GLYMA02G13371.2 | 2 | 1399 | 0 | 36 | 7.2 | 1.5 | 5' TTGACAGAAGATAGAGAGCAC 3' o|||||||||| ||||||||| 3' ACTAGACTGTCTTCTCTCTCTCGTGTCGAACT 5' |
497 | Glycine max | ACGGACACCGAACACGACACGGAC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA17G05840.3 cdna:known chromosome:V1.0:Gm17:4116203:4118256:-1 gene:GLYMA17G05840 transcript:GLYMA17G05840.3 | 2 | 1309 | 0 | 26 | 26 | 2 | 5' ACGGACACCGAACACGACACGGAC 3' |||o|||||| |||||||||o||| 3' GCTGTGCTTGTGGCCTGTGCTGTGTCTGTGAA 5' |
498 | Glycine max | TGAGAGAAAGCCATGACTTAC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA08G27941.2 cdna:novel chromosome:V1.0:Gm08:22208426:22211736:-1 gene:GLYMA08G27941 transcript:GLYMA08G27941.2 | 0 | 190 | 0 | 18 | 9 | 1 | 5' TGAGAGAAAGCCATGACTTAC 3' | ||||||||||||||||||| 3' CTCTAGTCTCTTTCGGTACTGAATGTTTGTGT 5' |
499 | Glycine max | TTTGGATTGAAGGGAGCTC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA06G47000.2 cdna:novel chromosome:V1.0:Gm06:49543622:49548924:-1 gene:GLYMA06G47000 transcript:GLYMA06G47000.2 | 0 | 1343 | 0 | 60 | 15 | 1 | 5' TTTGGATTGAAGGGAGCTC 3' |||||| |||||||||||| 3' CCTTAAACCTCACTTCCCTCGAGACTGAAGTG 5' |
500 | Glycine max | CGGACCAGGCTTCATTCCCGT | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA01G40900.3 cdna:novel chromosome:V1.0:Gm01:52553730:52560423:-1 gene:GLYMA01G40900 transcript:GLYMA01G40900.3 | 2 | 426 | 0.05 | 20 | 10 | 3.5 | 5' CGGACCAGGCTTCATTCCCGT 3' | ||| ||||||||||| |o| 3' TCACGACTGTTCCGAAGTAAGAGTAGCATCTT 5' |
501 | Glycine max | TGACAGAAGAGAGTGAGCAC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA02G13371.2 cdna:novel chromosome:V1.0:Gm02:11670695:11677264:-1 gene:GLYMA02G13371 transcript:GLYMA02G13371.2 | 2 | 1398 | 0 | 30 | 6 | 1 | 5' TGACAGAAGAGAGTGAGCAC 3' ||||||||||||| |||||| 3' CTAGACTGTCTTCTCTCTCTCGTGTCGAACTA 5' |
502 | Glycine max | TCAAAGGGAGTTGTAGGGGAA | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA07G14490.2 cdna:novel chromosome:V1.0:Gm07:13937870:13941713:-1 gene:GLYMA07G14490 transcript:GLYMA07G14490.2 | 1 | 296 | 0 | 30 | 15 | 4 | 5' TCAAAGGGAG-TTGTAGGGGAA 3' | |||||||| |||| | |||| 3' TCTCACTTTCCCTCCAACAACGCCTTGAACGC 5' |
503 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA14G10090.1 cdna:novel chromosome:V1.0:Gm14:8190765:8195025:-1 gene:GLYMA14G10090 transcript:GLYMA14G10090.1 | 2 | 1104 | 0 | 49 | 16.3333 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' CGGAAGGTGTCCGAAAGAACTTGCTACCGCAG 5' |
504 | Glycine max | TTGACAGAAGATAGAGAGCAC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA0005S50.1 cdna:novel chromosome:V1.0:Gm05:16185:21667:1 gene:GLYMA0005S50 transcript:GLYMA0005S50.1 | 0 | 1912 | 0 | 60 | 15 | 2 | 5' TTGACAGAAGATAGAGAGCAC 3' |||||||||| ||||||||| 3' ACTCTACTGTCTTCTCTCTCTCGTGTTGTTCT 5' |
505 | Glycine max | TCATCATCATCATCTTCTTCT | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA03G32020.3 cdna:novel chromosome:V1.0:Gm03:39830110:39837209:-1 gene:GLYMA03G32020 transcript:GLYMA03G32020.3 | 2 | 824 | 0 | 48 | 48 | 0 | 5' TCATCATCATCATCTTCTTCT 3' ||||||||||||||||||||| 3' AAGGAGTAGTAGTAGTAGAAGAAGAACGACAC 5' |
506 | Glycine max | TTCCACAGCTTTCTTGAACTG | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA02G02942.2 cdna:novel chromosome:V1.0:Gm02:2254118:2257679:1 gene:GLYMA02G02942 transcript:GLYMA02G02942.2 | 2 | 549 | 0.03 | 7 | 3.5 | 3 | 5' TTCCACA-GCTTTCTTGAACTG 3' o||| || ||||||o||||||| 3' AACGAGGCGTCCGAAAGGACTTGACAAAAGAG 5' |
507 | Glycine max | TCGGACCAGGCTTCATTCC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA12G08080.1 cdna:novel chromosome:V1.0:Gm12:5801673:5808673:1 gene:GLYMA12G08080 transcript:GLYMA12G08080.1 | 1 | 1424 | 0 | 60 | 30 | 1 | 5' TCGGACCAGGCTTCATTCC 3' o|||||||||||||||o|| 3' CTTAGGCCTGGTCCGAAGTAGGGTCCGTAGAC 5' |
508 | Glycine max | TCGGACCAGGCTTCATTCCC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA12G08080.1 cdna:novel chromosome:V1.0:Gm12:5801673:5808673:1 gene:GLYMA12G08080 transcript:GLYMA12G08080.1 | 1 | 1424 | 0 | 60 | 30 | 1.5 | 5' TCGGACCAGGCTTCATTCCC 3' o||||||||||||||| ||| 3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAGA 5' |
509 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA19G37740.1 cdna:novel chromosome:V1.0:Gm19:44838730:44842363:1 gene:GLYMA19G37740 transcript:GLYMA19G37740.1 | 1 | 943 | 0 | 30 | 7.5 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' ATCAAGGTGTCCGAAAGAACTTGCCAAAGAAG 5' |
510 | Glycine max | TTGACAGAAGATAGAGAGCAC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA11G36980.3 cdna:known chromosome:V1.0:Gm11:38244535:38250746:1 gene:GLYMA11G36980 transcript:GLYMA11G36980.3 | 1 | 3527 | 0 | 60 | 15 | 1 | 5' TTGACAGAAGATAGAGAGCAC 3' ||||||||||| ||||||||| 3' AAGCAACTGTCTTCTCTCTCTCGTGCCAATTG 5' |
511 | Glycine max | TTTGGATTGAAGGGAGCTCT | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA19G40720.1 cdna:novel chromosome:V1.0:Gm19:47059021:47063814:1 gene:GLYMA19G40720 transcript:GLYMA19G40720.1 | 2 | 2608 | 0.03 | 6 | 3 | 2.5 | 5' TTTGGATTGAAGGGAGCTCT 3' ||||||o||| |||| |||| 3' ACGGAAACCTGACTCCCCTGGAGAACGTGGTC 5' |
512 | Glycine max | TGACAGAAGAGAGTGAGCAC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA0005S50.1 cdna:novel chromosome:V1.0:Gm05:16185:21667:1 gene:GLYMA0005S50 transcript:GLYMA0005S50.1 | 2 | 1911 | 0 | 15 | 3.75 | 1 | 5' TGACAGAAGAGAGTGAGCAC 3' ||||||||||||| |||||| 3' CTCTACTGTCTTCTCTCTCTCGTGTTGTTCTC 5' |
513 | Glycine max | TGAAGCTGCCAGCATGATCT | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA13G29320.1 cdna:novel chromosome:V1.0:Gm13:32246000:32253054:1 gene:GLYMA13G29320 transcript:GLYMA13G29320.1 | 0 | 3359 | 0.01 | 60 | 15 | 3 | 5' TGAAGCTGCCAGCATGATCT 3' ||||||||||| |||||| 3' TTTATGTTCGACGGTCGGACTAGAGTGTCCCA 5' |
514 | Glycine max | TGAAGCTGCCAGCATGATCT | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA11G31940.2 cdna:novel chromosome:V1.0:Gm11:33249980:33257973:-1 gene:GLYMA11G31940 transcript:GLYMA11G31940.2 | 0 | 2802 | 0.02 | 60 | 30 | 3 | 5' TGAAGCTGCCAGCATGATCT 3' ||||||||||| |||||| 3' CTTGTGTTCGACGGTCGGACTAGATTCTCCCA 5' |
515 | Glycine max | TGAAGCTGCCAGCATGATCT | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA08G23930.2 cdna:known chromosome:V1.0:Gm08:18227872:18233848:1 gene:GLYMA08G23930 transcript:GLYMA08G23930.2 | 2 | 439 | 0.04 | 28 | 7 | 3 | 5' TGAAGCTGCCAGCATGATCT 3' |||||||| ||||| o|o|| 3' GTCTACTTCGAC-GTCGTCTTGGACTACAAAA 5' |
516 | Glycine max | TGACAGAAGAGAGTGAGCAC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA11G36980.3 cdna:known chromosome:V1.0:Gm11:38244535:38250746:1 gene:GLYMA11G36980 transcript:GLYMA11G36980.3 | 2 | 3526 | 0 | 30 | 7.5 | 1 | 5' TGACAGAAGAGAGTGAGCAC 3' ||||||||||||| |||||| 3' AGCAACTGTCTTCTCTCTCTCGTGCCAATTGT 5' |
517 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA03G35010.3 cdna:novel chromosome:V1.0:Gm03:42329293:42333139:1 gene:GLYMA03G35010 transcript:GLYMA03G35010.3 | 2 | 1191 | 0 | 30 | 7.5 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' ATCAAGGTGTCCGAAAGAACTTGCCAAAGAAG 5' |
518 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA13G16924.2 cdna:novel chromosome:V1.0:Gm13:20777152:20779829:-1 gene:GLYMA13G16924 transcript:GLYMA13G16924.2 | 0 | 769 | 0.01 | 60 | 12 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' TTGAAGGTGTCCGAAAGAACTTGCTAAAAAGG 5' |
519 | Glycine max | CTTGTTTGTGGTGATGTCT | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA08G22920.2 cdna:novel chromosome:V1.0:Gm08:17432371:17433466:1 gene:GLYMA08G22920 transcript:GLYMA08G22920.2 | 1 | 280 | 0 | 13 | 13 | 2.5 | 5' CTTGTTTGTGGTGATGTCT 3' ||||||o|o||o|| |||| 3' GCCGGAACAAGCGCCGCT-CAGAGAACTCCAT 5' |
520 | Glycine max | CAGCCAAGGATGACTTGCCG | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA09G07960.4 cdna:known chromosome:V1.0:Gm09:6957611:6961791:1 gene:GLYMA09G07960 transcript:GLYMA09G07960.4 | 2 | 1140 | 0.04 | 17 | 4.25 | 3 | 5' CAGCCAAGGATGACTTGCCG 3' |||||||||||| ||||| 3' CTGATTCGGTTCCTACTAAACGGACTGGCCAC 5' |
521 | Glycine max | TGAAGCTGCCAGCATGATCT | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA02G40650.2 cdna:novel chromosome:V1.0:Gm02:45888235:45899367:-1 gene:GLYMA02G40650 transcript:GLYMA02G40650.2 | 0 | 2942 | 0.01 | 60 | 15 | 3 | 5' TGAAGCTGCCAGCATGATCT 3' ||||||||||| |||||| 3' CTTATGTTCGACGGTCGGACTAGATTCTCCCA 5' |
522 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA14G10100.2 cdna:novel chromosome:V1.0:Gm14:8199978:8204920:-1 gene:GLYMA14G10100 transcript:GLYMA14G10100.2 | 2 | 1147 | 0 | 40 | 13.3333 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' CGGAAGGTGTCCGAAAGAACTTGCTACCGCAG 5' |
523 | Glycine max | TGCCTGGCTCCCTGTATGCC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA10G35481.1 cdna:novel chromosome:V1.0:Gm10:43704337:43707929:1 gene:GLYMA10G35481 transcript:GLYMA10G35481.1 | 2 | 1609 | 0 | 60 | 15 | 0 | 5' TGCCTGGCTCCCTGTATGCC 3' |||||||||||||||||||| 3' TCGTACGGACCGAGGGACATACGGAGGTCTTG 5' |
524 | Glycine max | TCGGACCAGGCTTCATTCC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA05G30000.1 cdna:novel chromosome:V1.0:Gm05:35421769:35428492:1 gene:GLYMA05G30000 transcript:GLYMA05G30000.1 | 2 | 1080 | 0 | 60 | 12 | 1 | 5' TCGGACCAGGCTTCATTCC 3' o|||||||||||||||o|| 3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAGAC 5' |
525 | Glycine max | TCGGACCAGGCTTCATTCCC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA05G30000.1 cdna:novel chromosome:V1.0:Gm05:35421769:35428492:1 gene:GLYMA05G30000 transcript:GLYMA05G30000.1 | 2 | 1080 | 0 | 60 | 12 | 1.5 | 5' TCGGACCAGGCTTCATTCCC 3' o||||||||||||||| ||| 3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5' |
526 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA16G00971.4 cdna:novel chromosome:V1.0:Gm16:636293:639481:-1 gene:GLYMA16G00971 transcript:GLYMA16G00971.4 | 0 | 955 | 0 | 60 | 12 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' TTGAAGGTGTCCGAAAGAACTTGCCAAAGACG 5' |
527 | Glycine max | TGTGTTCTCAGGTCGCCCCT | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA03G40280.3 cdna:known chromosome:V1.0:Gm03:46076955:46080391:1 gene:GLYMA03G40280 transcript:GLYMA03G40280.3 | 2 | 156 | 0.02 | 26 | 13 | 2.5 | 5' TGTGTTCTCAGGTCGCCCCT 3' |||| ||||||| |o||||| 3' AGTTACACTAGAGTCCCGTGGGGAATCTGTCT 5' |
528 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA01G44471.1 cdna:known chromosome:V1.0:Gm01:55141915:55148004:-1 gene:GLYMA01G44471 transcript:GLYMA01G44471.1 | 2 | 835 | 0 | 60 | 12 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' ACTAAGGTGTCCGAAAGAACTTGCCAACGCCG 5' |
529 | Glycine max | TCGGACCAGGCTTCATTCC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA09G02750.1 cdna:novel chromosome:V1.0:Gm09:1901637:1907522:-1 gene:GLYMA09G02750 transcript:GLYMA09G02750.1 | 2 | 968 | 0 | 60 | 12 | 1 | 5' TCGGACCAGGCTTCATTCC 3' o|||||||||||||||o|| 3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAGAC 5' |
530 | Glycine max | TCGGACCAGGCTTCATTCCC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA09G02750.1 cdna:novel chromosome:V1.0:Gm09:1901637:1907522:-1 gene:GLYMA09G02750 transcript:GLYMA09G02750.1 | 2 | 968 | 0 | 60 | 12 | 1.5 | 5' TCGGACCAGGCTTCATTCCC 3' o||||||||||||||| ||| 3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5' |
531 | Glycine max | TTGAGCCGTGCCAATATCA | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA03G03760.2 cdna:novel chromosome:V1.0:Gm03:3581308:3584468:-1 gene:GLYMA03G03760 transcript:GLYMA03G03760.2 | 0 | 1642 | 0 | 60 | 20 | 1.5 | 5' TTGAGCCGTGCCAATATCA 3' ||||||||o||||||||| 3' CACTAACTCGGCGCGGTTATAGGGAACGCGTA 5' |
532 | Glycine max | TCGGACCAGGCTTCATTCC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA08G21620.3 cdna:novel chromosome:V1.0:Gm08:16441681:16450105:-1 gene:GLYMA08G21620 transcript:GLYMA08G21620.3 | 2 | 866 | 0 | 60 | 6 | 0.5 | 5' TCGGACCAGGCTTCATTCC 3' o|||||||||||||||||| 3' CTTAGGCCTGGTCCGAAGTAAGGTCCGTAAAC 5' |
533 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA11G01060.1 cdna:novel chromosome:V1.0:Gm11:573836:577693:1 gene:GLYMA11G01060 transcript:GLYMA11G01060.1 | 2 | 486 | 0 | 60 | 12 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' ACTAAGGTGTCCGAAAGAACTTGCCAACGCCG 5' |
534 | Glycine max | TGATTGAGCCGTGCCAATAT | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA03G03760.2 cdna:novel chromosome:V1.0:Gm03:3581308:3584468:-1 gene:GLYMA03G03760 transcript:GLYMA03G03760.2 | 2 | 1645 | 0 | 50 | 16.6667 | 0.5 | 5' TGATTGAGCCGTGCCAATAT 3' |||||||||||o|||||||| 3' GACCACTAACTCGGCGCGGTTATAGGGAACGC 5' |
535 | Glycine max | TGCCTGGCTCCCTGTATGCC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA12G08110.1 cdna:novel chromosome:V1.0:Gm12:5840398:5844362:-1 gene:GLYMA12G08110 transcript:GLYMA12G08110.1 | 2 | 1640 | 0 | 60 | 15 | 1 | 5' TGCCTGGCTCCCTGTATGCC 3' ||||||||||||||||| || 3' TCGTACGGACCGAGGGACATAGGGACGTCCTC 5' |
536 | Glycine max | TCGGACCAGGCTTCATTCC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA15G13640.1 cdna:novel chromosome:V1.0:Gm15:10250637:10256541:-1 gene:GLYMA15G13640 transcript:GLYMA15G13640.1 | 2 | 945 | 0 | 60 | 6 | 1 | 5' TCGGACCAGGCTTCATTCC 3' o|||||||||||||||o|| 3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAGAC 5' |
537 | Glycine max | TCGGACCAGGCTTCATTCCC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA15G13640.1 cdna:novel chromosome:V1.0:Gm15:10250637:10256541:-1 gene:GLYMA15G13640 transcript:GLYMA15G13640.1 | 2 | 945 | 0.02 | 60 | 6 | 1.5 | 5' TCGGACCAGGCTTCATTCCC 3' o||||||||||||||| ||| 3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5' |
538 | Glycine max | TTGACAGAAGATAGAGAGCAC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA19G32800.1 cdna:novel chromosome:V1.0:Gm19:40502386:40507238:-1 gene:GLYMA19G32800 transcript:GLYMA19G32800.1 | 0 | 1139 | 0 | 30 | 15 | 1 | 5' TTGACAGAAGATAGAGAGCAC 3' ||||||||||| ||||||||| 3' ACTAAACTGTCTTCTCTCTCTCGTGTCGAGCA 5' |
539 | Glycine max | TTGAGCCGTGCCAATATCA | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA14G17863.1 cdna:novel chromosome:V1.0:Gm14:19931432:19937024:-1 gene:GLYMA14G17863 transcript:GLYMA14G17863.1 | 0 | 305 | 0.05 | 23 | 7.66667 | 4 | 5' TTGAGCCGTGCCAATATCA 3' || ||||o|| |||o ||| 3' TTACAA-TCGGTACAGTTGAAGTAGCATTAGG 5' |
540 | Glycine max | TGCCTGGCTCCCTGTATGCC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA12G29720.1 cdna:novel chromosome:V1.0:Gm12:33175269:33178907:-1 gene:GLYMA12G29720 transcript:GLYMA12G29720.1 | 0 | 1654 | 0 | 52 | 52 | 0 | 5' TGCCTGGCTCCCTGTATGCC 3' |||||||||||||||||||| 3' TCGTACGGACCGAGGGACATACGGACGTCCTC 5' |
541 | Glycine max | TGATTGAGCCGTGCCAATAT | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA01G18040.1 cdna:novel chromosome:V1.0:Gm01:22484145:22487576:-1 gene:GLYMA01G18040 transcript:GLYMA01G18040.1 | 1 | 1771 | 0 | 60 | 30 | 0.5 | 5' TGATTGAGCCGTGCCAATAT 3' |||||||||||o|||||||| 3' AACCACTAACTCGGCGCGGTTATAGGGTACGC 5' |
542 | Glycine max | TTTGGATTGAAGGGAGCTCTA | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA05G26500.2 cdna:novel chromosome:V1.0:Gm05:32448836:32452781:-1 gene:GLYMA05G26500 transcript:GLYMA05G26500.2 | 0 | 347 | 0.02 | 30 | 15 | 4 | 5' TTTGGATT-GAAGGGAGCTCTA 3' ||||| || |||||o| |||o| 3' CATAAACCAAAGCTTCCTTGGAGGTCGAATCC 5' |
543 | Glycine max | TGCCTGGCTCCCTGTATGCC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA14G33730.1 cdna:novel chromosome:V1.0:Gm14:41889885:41894154:1 gene:GLYMA14G33730 transcript:GLYMA14G33730.1 | 0 | 1184 | 0 | 60 | 30 | 0.5 | 5' TGCCTGGCTCCCTGTATGCC 3' ||||||||||||||o||||| 3' TAGTACGGACCGAGGGACGTACGGTCGTCCTT 5' |
544 | Glycine max | TGCCTGGCTCCCTGTATGCC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA13G20382.2 cdna:novel chromosome:V1.0:Gm13:23822784:23826849:-1 gene:GLYMA13G20382 transcript:GLYMA13G20382.2 | 1 | 1754 | 0 | 60 | 15 | 0.5 | 5' TGCCTGGCTCCCTGTATGCC 3' ||||||||||||||o||||| 3' TCGTACGGACCGAGGGACGTACGGTCGTCCTC 5' |
545 | Glycine max | TGATTGAGCCGTGCCAATAT | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA01G33270.1 cdna:novel chromosome:V1.0:Gm01:45164207:45167759:-1 gene:GLYMA01G33270 transcript:GLYMA01G33270.1 | 2 | 1211 | 0 | 50 | 16.6667 | 0.5 | 5' TGATTGAGCCGTGCCAATAT 3' |||||||||||o|||||||| 3' GACCACTAACTCGGCGCGGTTATAGGGAACGC 5' |
546 | Glycine max | TTGAGCCGTGCCAATATCA | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA01G33270.1 cdna:novel chromosome:V1.0:Gm01:45164207:45167759:-1 gene:GLYMA01G33270 transcript:GLYMA01G33270.1 | 2 | 1208 | 0.01 | 60 | 20 | 1.5 | 5' TTGAGCCGTGCCAATATCA 3' ||||||||o||||||||| 3' CACTAACTCGGCGCGGTTATAGGGAACGCGTA 5' |
547 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA17G35100.2 cdna:novel chromosome:V1.0:Gm17:39088426:39092940:1 gene:GLYMA17G35100 transcript:GLYMA17G35100.2 | 2 | 1159 | 0 | 49 | 16.3333 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' CGGAAGGTGTCCGAAAGAACTTGCTACCGCAG 5' |
548 | Glycine max | TTGAGCCGTGCCAATATCA | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA01G18040.1 cdna:novel chromosome:V1.0:Gm01:22484145:22487576:-1 gene:GLYMA01G18040 transcript:GLYMA01G18040.1 | 2 | 1768 | 0.01 | 48 | 24 | 1.5 | 5' TTGAGCCGTGCCAATATCA 3' ||||||||o||||||||| 3' CACTAACTCGGCGCGGTTATAGGGTACGCGCT 5' |
549 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA01G34650.2 cdna:novel chromosome:V1.0:Gm01:47081811:47085604:1 gene:GLYMA01G34650 transcript:GLYMA01G34650.2 | 2 | 793 | 0 | 30 | 10 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' ACAAAGGTGTCCGAAAGAACTTGCTAAAGCTG 5' |
550 | Glycine max | TGAGCCAAGGATGACTTGCCGGT | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA08G06390.1 cdna:novel chromosome:V1.0:Gm08:4544275:4550234:1 gene:GLYMA08G06390 transcript:GLYMA08G06390.1 | 2 | 1137 | 0.05 | 21 | 5.25 | 4 | 5' TGAGCCAAGGATGACTTGCCGGT 3' oo|||||||| | |||||||o|o 3' AGGAGTTCGGTTCCCA-TGAACGGTCGTTTGT 5' |
551 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA01G35145.1 cdna:novel chromosome:V1.0:Gm01:47696214:47700220:1 gene:GLYMA01G35145 transcript:GLYMA01G35145.1 | 1 | 556 | 0 | 60 | 30 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' ACTAAGGTGTCCGAAAGAACTTGCCATTGCGG 5' |
552 | Glycine max | TGCCTGGCTCCCTGTATGCC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA04G43350.1 cdna:novel chromosome:V1.0:Gm04:48947065:48951466:1 gene:GLYMA04G43350 transcript:GLYMA04G43350.1 | 1 | 1540 | 0 | 30 | 30 | 0.5 | 5' TGCCTGGCTCCCTGTATGCC 3' ||||||||||||||o||||| 3' TAGTACGGACCGAGGGACGTACGGTCGTCCTT 5' |
553 | Glycine max | TGAAGCTGCCAGCATGATCTGA | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA14G38940.1 cdna:novel chromosome:V1.0:Gm14:48094947:48103242:-1 gene:GLYMA14G38940 transcript:GLYMA14G38940.1 | 2 | 2943 | 0.05 | 53 | 29 | 3.5 | 5' TGAAGCTGCCAGCATGATCTGA 3' ||||||||||| ||||||o| 3' CTTATGTTCGACGGTCGGACTAGATTCTCCCA 5' |
554 | Glycine max | TTGACAGAAGATAGAGAGCAC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA01G08056.2 cdna:novel chromosome:V1.0:Gm01:9051047:9057050:-1 gene:GLYMA01G08056 transcript:GLYMA01G08056.2 | 2 | 1285 | 0 | 36 | 7.2 | 1.5 | 5' TTGACAGAAGATAGAGAGCAC 3' o|||||||||| ||||||||| 3' ACTAGACTGTCTTCTCTCTCTCGTGTCGAACT 5' |
555 | Glycine max | TCAAAGGGAGTTGTAGGGGAA | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA13G09530.1 cdna:known chromosome:V1.0:Gm13:10956703:10963280:-1 gene:GLYMA13G09530 transcript:GLYMA13G09530.1 | 2 | 369 | 0.03 | 30 | 15 | 3.5 | 5' TCAAAGGGAGTTGTAGGGGAA 3' |||||||||||| ||o||| 3' ATGCCGTTTCCCTCAACTTCTCCTAGAAGTTT 5' |
556 | Glycine max | CAAAAGAGCTTATGGCTTGTA | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA06G18120.1 cdna:novel chromosome:V1.0:Gm06:14430561:14433504:-1 gene:GLYMA06G18120 transcript:GLYMA06G18120.1 | 2 | 1213 | 0.04 | 5 | 5 | 3.5 | 5' CAAAAGAGCTTATGGCTTGTA 3' ||||||||||| |||o||| 3' TTGTTTTTTCTCGAATTACGAGCATTGTCCCA 5' |
557 | Glycine max | TGACAGAAGAGAGTGAGCAC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA01G08056.2 cdna:novel chromosome:V1.0:Gm01:9051047:9057050:-1 gene:GLYMA01G08056 transcript:GLYMA01G08056.2 | 2 | 1284 | 0 | 30 | 6 | 1 | 5' TGACAGAAGAGAGTGAGCAC 3' ||||||||||||| |||||| 3' CTAGACTGTCTTCTCTCTCTCGTGTCGAACTA 5' |
558 | Glycine max | TGGAGAAGCAGGGCACGTGCA | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA05G00930.1 cdna:novel chromosome:V1.0:Gm05:542676:544662:-1 gene:GLYMA05G00930 transcript:GLYMA05G00930.1 | 2 | 883 | 0 | 23 | 4.6 | 2.5 | 5' TGGAGAAGCAGGGCACGTGCA 3' ||||||||||||||||||o 3' CCTAACCTCTTCGTCCCGTGCATTCGGCTTAG 5' |
559 | Glycine max | TTTGGATTGAAGGGAGCTC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA13G25716.2 cdna:novel chromosome:V1.0:Gm13:28929349:28934215:1 gene:GLYMA13G25716 transcript:GLYMA13G25716.2 | 2 | 1830 | 0.01 | 10 | 2 | 2 | 5' TTTGGATTGAAGGGAGCTC 3' ||||| |||||||||||| 3' CCTATAACCTCACTTCCCTCGAGGTTGAAGTA 5' |
560 | Glycine max | CAATCAGAACGTGACACGTGA | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA15G43050.1 cdna:novel chromosome:V1.0:Gm15:50553764:50558289:-1 gene:GLYMA15G43050 transcript:GLYMA15G43050.1 | 0 | 732 | 0 | 23 | 3.28571 | 3 | 5' CAATCAGAACGTGACACGTGA 3' |||||| ||o|o|||||||| 3' ACCTATTAGTC-TGTATTGTGCACTGAAGTAT 5' |
561 | Glycine max | TTGACAGAAGATAGAGAGCAC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA18G00903.1 cdna:novel chromosome:V1.0:Gm18:426939:431809:1 gene:GLYMA18G00903 transcript:GLYMA18G00903.1 | 1 | 2437 | 0 | 60 | 60 | 1 | 5' TTGACAGAAGATAGAGAGCAC 3' ||||||||||| ||||||||| 3' AAGCAACTGTCTTCTCTCTCTCGTGCCAATTG 5' |
562 | Glycine max | GGAATGGGCTGATTGGGAAGC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA19G41400.3 cdna:novel chromosome:V1.0:Gm19:47672810:47682604:1 gene:GLYMA19G41400 transcript:GLYMA19G41400.3 | 2 | 2323 | 0.01 | 6 | 3 | 2.5 | 5' GGAATGGGCTGATTGGGAAGC 3' |||| ||||||||||o|||| 3' GGGCACTTA-CCGACTAACCTTTCGACCTATC 5' |
563 | Glycine max | TGATTGAGCCGTGCCAATAT | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA11G17490.1 cdna:novel chromosome:V1.0:Gm11:13613694:13616986:1 gene:GLYMA11G17490 transcript:GLYMA11G17490.1 | 1 | 1661 | 0 | 60 | 30 | 0.5 | 5' TGATTGAGCCGTGCCAATAT 3' |||||||||||o|||||||| 3' AACCACTAACTCGGCGCGGTTATAGGGCACGC 5' |
564 | Glycine max | TTCCACAGCTTTCTTGAACTT | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA17G35090.2 cdna:novel chromosome:V1.0:Gm17:39077361:39082558:1 gene:GLYMA17G35090 transcript:GLYMA17G35090.2 | 2 | 1271 | 0.05 | 49 | 16.3333 | 3 | 5' TTCCACA-GCTTTCTTGAACTT 3' ||||||| |||||||||||| 3' CGGAAGGTGTCCGAAAGAACTTGCTACCGCAG 5' |
565 | Glycine max | TGGAGAAGCAGGGCACGTGCA | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA06G21020.1 cdna:known chromosome:V1.0:Gm06:17431771:17433898:1 gene:GLYMA06G21020 transcript:GLYMA06G21020.1 | 2 | 1106 | 0.02 | 23 | 4.6 | 2.5 | 5' TGGAGAAGCAGGGCACGTGCA 3' ||||||||||||||||||o 3' CCTAACCTCTTCGTCCCGTGCATTCGTCTTAG 5' |
566 | Glycine max | TCATCATCATCATCTTCTTCT | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA10G04280.1 cdna:known chromosome:V1.0:Gm10:3247992:3250886:-1 gene:GLYMA10G04280 transcript:GLYMA10G04280.1 | 2 | 963 | 0.04 | 59 | 59 | 2 | 5' TCATCATCATCATCTTCTTCT 3' ||||| ||||||||||| ||| 3' AACAAGTAGAAGTAGTAGAAGCAGAAGTAGAA 5' |
567 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA07G05370.1 cdna:novel chromosome:V1.0:Gm07:4014246:4016764:1 gene:GLYMA07G05370 transcript:GLYMA07G05370.1 | 0 | 594 | 0.02 | 11 | 5.5 | 3 | 5' TTCCACAGCTTTCTTGAAC 3' |||| ||| |||||||| | 3' ACGAAAGG-GTCCAAAGAACTAGTTCGTTGTA 5' |
568 | Glycine max | TGAAGCTGCCAGCATGATCT | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA15G09750.2 cdna:novel chromosome:V1.0:Gm15:6969486:6976414:-1 gene:GLYMA15G09750 transcript:GLYMA15G09750.2 | 0 | 3239 | 0.02 | 60 | 15 | 3 | 5' TGAAGCTGCCAGCATGATCT 3' ||||||||||| |||||| 3' TTTATGTTCGACGGTCGGACTAGAGTGTCCCA 5' |
569 | Glycine max | TTGAGCCGTGCCAATATCA | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA11G17490.1 cdna:novel chromosome:V1.0:Gm11:13613694:13616986:1 gene:GLYMA11G17490 transcript:GLYMA11G17490.1 | 2 | 1658 | 0 | 48 | 24 | 1.5 | 5' TTGAGCCGTGCCAATATCA 3' ||||||||o||||||||| 3' CACTAACTCGGCGCGGTTATAGGGCACGCGCT 5' |
570 | Glycine max | TTTGGATTGAAGGGAGCTC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA03G38120.1 cdna:novel chromosome:V1.0:Gm03:44522026:44526882:1 gene:GLYMA03G38120 transcript:GLYMA03G38120.1 | 2 | 2611 | 0.05 | 6 | 3 | 2.5 | 5' TTTGGATTGAAGGGAGCTC 3' ||||||o||| |||| ||| 3' ACGGAAACCTGACTCCCCTGGAGAACGTGGTC 5' |
571 | Glycine max | TTGACAGAAGATAGAGAGCAC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA17G08840.2 cdna:novel chromosome:V1.0:Gm17:6526544:6532020:-1 gene:GLYMA17G08840 transcript:GLYMA17G08840.2 | 1 | 1901 | 0 | 60 | 15 | 2 | 5' TTGACAGAAGATAGAGAGCAC 3' |||||||||| ||||||||| 3' ACTCTACTGTCTTCTCTCTCTCGTGTTGTTCT 5' |
572 | Glycine max | TTGACAGAAGATAGAGAGCAC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA04G32002.1 cdna:novel chromosome:V1.0:Gm04:36451982:36456753:1 gene:GLYMA04G32002 transcript:GLYMA04G32002.1 | 2 | 1937 | 0 | 60 | 15 | 2 | 5' TTGACAGAAGATAGAGAGCAC 3' |||||||||| ||||||||| 3' ACTCTACTGTCTTCTCTCTCTCGTGTCGGTCT 5' |
573 | Glycine max | CCGGAAGAGGAAAATTAAGCAA | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA06G45080.4 cdna:novel chromosome:V1.0:Gm06:47855010:47859775:1 gene:GLYMA06G45080 transcript:GLYMA06G45080.4 | 2 | 1725 | 0.02 | 16 | 1.77778 | 3.5 | 5' CCGGAAGAGGAA-AATTAAGCAA 3' |o||||||||| |||||||| | 3' TACTCGTCTTCTCCTTATTAATTCGATAACAA 5' |
574 | Glycine max | TTCATTTTTAAAATAGGCATT | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA07G05360.2 cdna:novel chromosome:V1.0:Gm07:3999102:4001108:1 gene:GLYMA07G05360 transcript:GLYMA07G05360.2 | 2 | 889 | 0 | 4 | 2 | 0.5 | 5' TTCATTTTTAAAATAGGCATT 3' |||||||o||||||||||||| 3' ACAAAAGTAAAGATTTTATCCGTAACAATTTA 5' |
575 | Glycine max | TCGCTTGGTGCAGGTCGGGAA | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA05G25150.1 cdna:novel chromosome:V1.0:Gm05:31295886:31298052:1 gene:GLYMA05G25150 transcript:GLYMA05G25150.1 | 0 | 974 | 0.01 | 30 | 10 | 3.5 | 5' TCGCTTGG-TGCAGGTCGGGAA 3' | |||||| |||||oo|o|||| 3' ATCAACGAACCGACGTCTGGTCCTTGCTCTCT 5' |
576 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA09G34565.1 cdna:novel chromosome:V1.0:Gm09:40925699:40929850:1 gene:GLYMA09G34565 transcript:GLYMA09G34565.1 | 1 | 610 | 0 | 60 | 30 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' ACTAAGGTGTCCGAAAGAACTTGCCATTGCTG 5' |
577 | Glycine max | TGGAGAAGCAGGGCACGTGCA | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA04G33270.1 cdna:novel chromosome:V1.0:Gm04:38776490:38778616:-1 gene:GLYMA04G33270 transcript:GLYMA04G33270.1 | 2 | 1066 | 0.04 | 23 | 4.6 | 3.5 | 5' TGGAGAAGCAGGGCACGTGCA 3' ||||||||||||| ||||o 3' CCTAACCTCTTCGTCCCATGCATTCGGCATAG 5' |
578 | Glycine max | TGCCTGGCTCCCTGTATGCC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA13G02410.1 cdna:novel chromosome:V1.0:Gm13:2276691:2281351:-1 gene:GLYMA13G02410 transcript:GLYMA13G02410.1 | 0 | 1530 | 0 | 60 | 60 | 0.5 | 5' TGCCTGGCTCCCTGTATGCC 3' ||||||||||||||o||||| 3' TAGTACGGACCGAGGGACGTACGGTCGTCCTT 5' |
579 | Glycine max | TCCAAAGGGATCGCATTGATC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA03G36770.1 cdna:novel chromosome:V1.0:Gm03:43630257:43634178:1 gene:GLYMA03G36770 transcript:GLYMA03G36770.1 | 2 | 1806 | 0 | 14 | 7 | 1 | 5' TCCAAAGGGATCGCATTGATC 3' |||||||||||||||||| || 3' CTGTAGGTTTCCCTAGCGTAAC-AGAGGTCGA 5' |
580 | Glycine max | TCGGACCAGGCTTCATTCC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA06G09100.1 cdna:novel chromosome:V1.0:Gm06:6696969:6703161:1 gene:GLYMA06G09100 transcript:GLYMA06G09100.1 | 2 | 957 | 0 | 60 | 6 | 1 | 5' TCGGACCAGGCTTCATTCC 3' o|||||||||||||||o|| 3' CTTAGGCCTGGTCCGAAGTAGGGTCCGTAAAC 5' |
581 | Glycine max | TCGGACCAGGCTTCATTCCC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA06G09100.1 cdna:novel chromosome:V1.0:Gm06:6696969:6703161:1 gene:GLYMA06G09100 transcript:GLYMA06G09100.1 | 2 | 957 | 0 | 60 | 6 | 1.5 | 5' TCGGACCAGGCTTCATTCCC 3' o||||||||||||||| ||| 3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAAA 5' |
582 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA04G40880.2 cdna:novel chromosome:V1.0:Gm04:46789378:46792963:-1 gene:GLYMA04G40880 transcript:GLYMA04G40880.2 | 2 | 1113 | 0 | 41 | 8.2 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' TTGAAGGTGTCCGAAAGAACTTGCCCCTGCCG 5' |
583 | Glycine max | TGCCTGGCTCCCTGTATGCC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA10G06080.2 cdna:novel chromosome:V1.0:Gm10:4819433:4824893:-1 gene:GLYMA10G06080 transcript:GLYMA10G06080.2 | 0 | 2010 | 0 | 60 | 15 | 0.5 | 5' TGCCTGGCTCCCTGTATGCC 3' ||||||||||||||o||||| 3' TCGTACGGACCGAGGGACGTACGGTCGTCCAC 5' |
584 | Glycine max | TTTGGATTGAAGGGAGCTC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA15G35860.4 cdna:novel chromosome:V1.0:Gm15:40661766:40666367:1 gene:GLYMA15G35860 transcript:GLYMA15G35860.4 | 2 | 1930 | 0.04 | 10 | 2 | 2 | 5' TTTGGATTGAAGGGAGCTC 3' ||||| |||||||||||| 3' CCTATAACCTCACTTCCCTCGAGGTTGAAGTG 5' |
585 | Glycine max | CTTTGTATTCTTCCACAGCTT | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA12G32780.4 cdna:novel chromosome:V1.0:Gm12:36201283:36214886:-1 gene:GLYMA12G32780 transcript:GLYMA12G32780.4 | 1 | 1899 | 0.01 | 30 | 5 | 4 | 5' CTTTGTATTCTTCCACAGCTT 3' ||||||| || ||||| | || 3' CTAAGAAACATCAGTAGGTG-CTAAGTTGTCA 5' |
586 | Glycine max | TTGACAGAAGATAGAGAGCAC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA02G30670.2 cdna:novel chromosome:V1.0:Gm02:32711340:32716829:-1 gene:GLYMA02G30670 transcript:GLYMA02G30670.2 | 0 | 962 | 0 | 60 | 60 | 1 | 5' TTGACAGAAGATAGAGAGCAC 3' ||||||||||| ||||||||| 3' ACTGAACTGTCTTCTCTCTCTCGTGTCAAACT 5' |
587 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA06G13960.2 cdna:novel chromosome:V1.0:Gm06:11041407:11044426:1 gene:GLYMA06G13960 transcript:GLYMA06G13960.2 | 2 | 713 | 0 | 41 | 8.2 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' TTGAAGGTGTCCGAAAGAACTTGCCCCTGCCG 5' |
588 | Glycine max | TGACAGAAGAGAGTGAGCAC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA02G30670.2 cdna:novel chromosome:V1.0:Gm02:32711340:32716829:-1 gene:GLYMA02G30670 transcript:GLYMA02G30670.2 | 2 | 961 | 0 | 37 | 37 | 1 | 5' TGACAGAAGAGAGTGAGCAC 3' ||||||||||||| |||||| 3' CTGAACTGTCTTCTCTCTCTCGTGTCAAACTC 5' |
589 | Glycine max | TTGACAGAAGATAGAGAGCAC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA18G36960.1 cdna:novel chromosome:V1.0:Gm18:43828448:43833563:1 gene:GLYMA18G36960 transcript:GLYMA18G36960.1 | 2 | 902 | 0 | 20 | 20 | 1 | 5' TTGACAGAAGATAGAGAGCAC 3' ||||||||||| ||||||||| 3' ACAGAACTGTCTTCTCTCTCTCGTGTCAAACT 5' |
590 | Glycine max | ATTGAGCCGCGTCAATATC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA05G27850.1 cdna:novel chromosome:V1.0:Gm05:33708696:33715812:-1 gene:GLYMA05G27850 transcript:GLYMA05G27850.1 | 0 | 2167 | 0.02 | 28 | 14 | 3.5 | 5' ATTGAGCCGCGTCAATATC 3' |o| ||||o| ||||o||| 3' GTCATGA-TCGGTGGAGTTGTAGGAAGAACCC 5' |
591 | Glycine max | CAGAGAGCAGAAACAGAACTG | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA01G35410.1 cdna:novel chromosome:V1.0:Gm01:47910024:47911708:-1 gene:GLYMA01G35410 transcript:GLYMA01G35410.1 | 0 | 705 | 0.05 | 30 | 30 | 4 | 5' CAGAGAGCAGAAACAGAACTG 3' |||| |o|||||| ||| |o| 3' CTTCGTCT-TTGTCTTTCTCTGGGCAGAAATC 5' |
592 | Glycine max | CTTGTTTGTGGTGATGTCT | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA07G39020.1 cdna:known chromosome:V1.0:Gm07:43621171:43623713:-1 gene:GLYMA07G39020 transcript:GLYMA07G39020.1 | 2 | 366 | 0 | 29 | 14.5 | 1.5 | 5' CTTGTT-TGTGGTGATGTCT 3' |||||| ||||o|||||||| 3' ACTGAACAAGACACTACTACAGAAGTCGGACT 5' |
593 | Glycine max | TCCAAAGGGATCGCATTGATC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA19G39420.1 cdna:novel chromosome:V1.0:Gm19:46102119:46105994:1 gene:GLYMA19G39420 transcript:GLYMA19G39420.1 | 2 | 1788 | 0 | 14 | 7 | 1 | 5' TCCAAAGGGATCGCATTGATC 3' |||||||||||||||||| || 3' CTGTAGGTTTCCCTAGCGTAAC-AGAGGTCGA 5' |
594 | Glycine max | TTAATCAAGGAAATCACGGTT | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA08G08430.1 cdna:known chromosome:V1.0:Gm08:6040931:6043635:1 gene:GLYMA08G08430 transcript:GLYMA08G08430.1 | 1 | 325 | 0.02 | 30 | 30 | 4 | 5' TTAATCAAGGAAATCACGGTT 3' o||||||||| |||| |||o 3' ACGTCGTTAGTTCCTGTAGTCCCAGCCTTTGC 5' |
595 | Glycine max | TGCCTGGCTCCCTGTATGCC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA13G40030.1 cdna:novel chromosome:V1.0:Gm13:40591013:40594198:1 gene:GLYMA13G40030 transcript:GLYMA13G40030.1 | 1 | 1779 | 0 | 30 | 30 | 0 | 5' TGCCTGGCTCCCTGTATGCC 3' |||||||||||||||||||| 3' TCTTACGGACCGAGGGACATACGGACGTCCTC 5' |
596 | Glycine max | TTTGGATTGAAGGGAGCTC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA20G11040.2 cdna:novel chromosome:V1.0:Gm20:15555630:15561246:1 gene:GLYMA20G11040 transcript:GLYMA20G11040.2 | 2 | 1525 | 0.03 | 3 | 1.5 | 2 | 5' TTTGGATTGAAGGGAGCTC 3' ||||| |||||||||||| 3' CCTATAACCTCACTTCCCTCGAGGTTGAAGTA 5' |
597 | Glycine max | TTCCACAGCTTTCTTGAACTT | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA04G40880.4 cdna:novel chromosome:V1.0:Gm04:46789378:46792991:-1 gene:GLYMA04G40880 transcript:GLYMA04G40880.4 | 2 | 1141 | 0.04 | 41 | 8.2 | 3 | 5' TTCCACA-GCTTTCTTGAACTT 3' ||||||| |||||||||||| 3' TTGAAGGTGTCCGAAAGAACTTGCCCCTGCCG 5' |
598 | Glycine max | ATGCACTGCCTGTTCCCTGGC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA06G12680.1 cdna:known chromosome:V1.0:Gm06:9846264:9847599:-1 gene:GLYMA06G12680 transcript:GLYMA06G12680.1 | 2 | 113 | 0 | 17 | 17 | 2.5 | 5' ATGCACTGCCTGTTCCCTGGC 3' ||||||||||| |||||||o 3' TTTCTACGTGACGGAGAAGGGACTCTGTAAGA 5' |
599 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA09G07990.1 cdna:novel chromosome:V1.0:Gm09:7003261:7005873:-1 gene:GLYMA09G07990 transcript:GLYMA09G07990.1 | 2 | 486 | 0 | 60 | 12 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' TTGAAGGTGTCCGAAAGAACTTGCTAAGAAGG 5' |
600 | Glycine max | TTGCCGATTCCACCCATTCCTA | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA17G34650.2 cdna:novel chromosome:V1.0:Gm17:38635991:38640855:1 gene:GLYMA17G34650 transcript:GLYMA17G34650.2 | 2 | 384 | 0.02 | 20 | 4 | 4 | 5' TTGCCGATTCCACCCATTCCTA 3' |||||o|o||| ||| ||||| 3' CGAGAACGGTTGAGGAGGGAAAGGACTGTTCT 5' |
601 | Glycine max | TCATCATCATCATCATCTTCA | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA20G23790.1 cdna:novel chromosome:V1.0:Gm20:33530315:33537439:-1 gene:GLYMA20G23790 transcript:GLYMA20G23790.1 | 2 | 568 | 0.01 | 3 | 3 | 1 | 5' TCATCATCATCATCATCTTCA 3' || |||||||||||||||||| 3' TAGGAGGAGTAGTAGTAGTAGAAGTAGTAGTA 5' |
602 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA17G05800.1 cdna:novel chromosome:V1.0:Gm17:4086935:4089150:1 gene:GLYMA17G05800 transcript:GLYMA17G05800.1 | 0 | 422 | 0 | 60 | 12 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' TTGAAGGTGTCCGAAAGAACTTGCCAAAAAGG 5' |
603 | Glycine max | TGCCTGGCTCCCTGTATGCC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA19G36571.1 cdna:novel chromosome:V1.0:Gm19:43842474:43846765:-1 gene:GLYMA19G36571 transcript:GLYMA19G36571.1 | 0 | 2324 | 0 | 41 | 41 | 0 | 5' TGCCTGGCTCCCTGTATGCC 3' |||||||||||||||||||| 3' TCGTACGGACCGAGGGACATACGGTCGTCCTC 5' |
604 | Glycine max | TGCACTGCCTCTTTCCTGGCT | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA06G12680.1 cdna:known chromosome:V1.0:Gm06:9846264:9847599:-1 gene:GLYMA06G12680 transcript:GLYMA06G12680.1 | 2 | 112 | 0.03 | 29 | 29 | 3 | 5' TGCACTGCCTCTTTCCTGGCT 3' |||||||||||||o||||o 3' TTCTACGTGACGGAGAAGGGACTCTGTAAGAC 5' |
605 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA10G07790.2 cdna:novel chromosome:V1.0:Gm10:6583388:6586706:1 gene:GLYMA10G07790 transcript:GLYMA10G07790.2 | 0 | 646 | 0 | 60 | 60 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' AACAAGGTGTCCGAAAGAACTTGCCAAGGCCG 5' |
606 | Glycine max | TTTGGATTGAAGGGAGCTC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA04G15150.3 cdna:novel chromosome:V1.0:Gm04:15669460:15674719:1 gene:GLYMA04G15150 transcript:GLYMA04G15150.3 | 1 | 1355 | 0 | 60 | 15 | 1 | 5' TTTGGATTGAAGGGAGCTC 3' |||||| |||||||||||| 3' CCTTAAACCTCACTTCCCTCGAGACTGAAACG 5' |
607 | Glycine max | TGCCTGGCTCCCTGTATGCC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA09G28360.2 cdna:novel chromosome:V1.0:Gm09:35348339:35353261:1 gene:GLYMA09G28360 transcript:GLYMA09G28360.2 | 2 | 2521 | 0 | 60 | 15 | 0.5 | 5' TGCCTGGCTCCCTGTATGCC 3' ||||||||||||o||||||| 3' TCGTACGGACCGAGGGGCATACGGACGTCTGG 5' |
608 | Glycine max | AGGGATAGGTAAAACAATGAC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA02G08415.1 cdna:novel chromosome:V1.0:Gm02:6599275:6600860:1 gene:GLYMA02G08415 transcript:GLYMA02G08415.1 | 2 | 96 | 0 | 17 | 17 | 2.5 | 5' AGGGATAGGTAAAACAATGAC 3' ||o|||||||||||||oo|| 3' AACCACCTTATCCATTTTGTTGTTGATTGATA 5' |
609 | Glycine max | TTTGGATTGAAGGGAGCTC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA15G08630.1 cdna:novel chromosome:V1.0:Gm15:6108906:6112083:-1 gene:GLYMA15G08630 transcript:GLYMA15G08630.1 | 2 | 1080 | 0.01 | 4 | 4 | 1.5 | 5' TTTGGATTGAAGGGAGCTC 3' ||||| |||||||o||||| 3' TTTGAAACCAAACTTCCTTCGAGACCTAGACC 5' |
610 | Glycine max | TCGGACCAGGCTTCATTCC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA08G13110.1 cdna:novel chromosome:V1.0:Gm08:9562597:9569062:1 gene:GLYMA08G13110 transcript:GLYMA08G13110.1 | 2 | 1092 | 0 | 60 | 12 | 1 | 5' TCGGACCAGGCTTCATTCC 3' o|||||||||||||||o|| 3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAAAC 5' |
611 | Glycine max | TCGGACCAGGCTTCATTCCC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA08G13110.1 cdna:novel chromosome:V1.0:Gm08:9562597:9569062:1 gene:GLYMA08G13110 transcript:GLYMA08G13110.1 | 2 | 1092 | 0 | 60 | 12 | 1.5 | 5' TCGGACCAGGCTTCATTCCC 3' o||||||||||||||| ||| 3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAAA 5' |
612 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA11G11826.1 cdna:novel chromosome:V1.0:Gm11:8435940:8440047:1 gene:GLYMA11G11826 transcript:GLYMA11G11826.1 | 2 | 615 | 0 | 60 | 12 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' ACTAAGGTGTCCGAAAGAACTTGCCAACGCCG 5' |
613 | Glycine max | TTGACAGAAGATAGAGAGCAC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA07G07870.1 cdna:known chromosome:V1.0:Gm07:6522220:6529131:1 gene:GLYMA07G07870 transcript:GLYMA07G07870.1 | 0 | 335 | 0 | 60 | 60 | 3.5 | 5' TTGACAGAAGATAGAGAGCAC 3' |||||||||| o||||||| 3' CACCCACTGTCTTCTCGTTCTCGTGTCTCCTC 5' |
614 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA13G21625.1 cdna:novel chromosome:V1.0:Gm13:25212900:25216570:1 gene:GLYMA13G21625 transcript:GLYMA13G21625.1 | 0 | 604 | 0 | 30 | 30 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' AACAAGGTGTCCGAAAGAACTTGCCAAAGCCG 5' |
615 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA07G04290.1 cdna:novel chromosome:V1.0:Gm07:3149413:3151946:-1 gene:GLYMA07G04290 transcript:GLYMA07G04290.1 | 2 | 728 | 0 | 60 | 12 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' TTGAAGGTGTCCGAAAGAACTTGCCAAAGACG 5' |
616 | Glycine max | TGAAGCTGCCAGCATGATCT | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA15G00770.2 cdna:novel chromosome:V1.0:Gm15:462686:466246:-1 gene:GLYMA15G00770 transcript:GLYMA15G00770.2 | 0 | 1634 | 0 | 50 | 50 | 2 | 5' TGAAGCTGCCAGCATGATCT 3' ||||||||||||| || ||| 3' GTAGACTTCGACGGTCG-ACAAGATGGCAGGA 5' |
617 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA15G19460.1 cdna:novel chromosome:V1.0:Gm15:16759912:16762499:-1 gene:GLYMA15G19460 transcript:GLYMA15G19460.1 | 0 | 450 | 0 | 60 | 60 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' TTGAAGGTGTCCGAAAGAACTTGCTAAGAAGG 5' |
618 | Glycine max | CAGAGAGCAGAAACAGAACTG | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA18G39771.2 cdna:novel chromosome:V1.0:Gm18:47890776:47893894:-1 gene:GLYMA18G39771 transcript:GLYMA18G39771.2 | 0 | 777 | 0 | 47 | 23.5 | 3 | 5' CAGAGAGCAGAAACAGAACTG 3' ||| | ||||||| ||||||| 3' CGTAGTCGCACGTCTTT-TCTTGACAATCTTC 5' |
619 | Glycine max | TTGACAGAAGATAGAGAGCAC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA03G29901.1 cdna:novel chromosome:V1.0:Gm03:37904151:37914523:-1 gene:GLYMA03G29901 transcript:GLYMA03G29901.1 | 0 | 1149 | 0 | 30 | 15 | 1 | 5' TTGACAGAAGATAGAGAGCAC 3' ||||||||||| ||||||||| 3' ACTAAACTGTCTTCTCTCTCTCGTGTCGAGCT 5' |
620 | Glycine max | TGAAGCTGCCAGCATGATCT | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA18G05330.1 cdna:novel chromosome:V1.0:Gm18:4066963:4074557:1 gene:GLYMA18G05330 transcript:GLYMA18G05330.1 | 0 | 2926 | 0.03 | 30 | 30 | 3 | 5' TGAAGCTGCCAGCATGATCT 3' ||||||||||| |||||| 3' CTTGTGTTCGACGGTCGGACTAGATTCTCCCA 5' |
621 | Glycine max | GCCTGGCTCCCTGTATGCC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA02G12900.3 cdna:novel chromosome:V1.0:Gm02:11166630:11169455:1 gene:GLYMA02G12900 transcript:GLYMA02G12900.3 | 2 | 1435 | 0.03 | 30 | 6 | 2.5 | 5' GCCTGGCTCCCTGTATGCC 3' o||||||| ||||| |||| 3' GACTTGGACCGATGGACA-ACGGAGTATACCT 5' |
622 | Glycine max | CAGAGAGCAGAAACAGAACTG | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA08G15090.1 cdna:known chromosome:V1.0:Gm08:10946832:10949797:1 gene:GLYMA08G15090 transcript:GLYMA08G15090.1 | 1 | 660 | 0.04 | 30 | 30 | 4 | 5' CAGAGAGCAGAAACAGAACTG 3' |||o|| ||||||| ||||o 3' AACGATCTTTCATCTTTGT-TTGATAACAGAT 5' |
623 | Glycine max | TAACAAGTGGGTTTGTTGACTG | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA05G30140.1 cdna:known chromosome:V1.0:Gm05:35569728:35575763:-1 gene:GLYMA05G30140 transcript:GLYMA05G30140.1 | 2 | 1489 | 0.02 | 30 | 30 | 3 | 5' TAACAAGTGGGTTTGTTGACTG 3' o | |||||||||o|||||||| 3' AACAGGT-TTCACCCAAGCAACTGACCAAGTA 5' |
624 | Glycine max | GTATAGCATCATGAGCAATCA | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA20G23760.1 cdna:known chromosome:V1.0:Gm20:33512670:33523842:-1 gene:GLYMA20G23760 transcript:GLYMA20G23760.1 | 1 | 495 | 0.01 | 15 | 15 | 4 | 5' GTATAGCATCATGAGCAATCA 3' || | ||||||||| ||||| 3' CACCCA-ACCGTAGTACTAGTTAGAAATGTTG 5' |
625 | Glycine max | CAATCAGAACGTGACACGTGA | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA11G34970.1 cdna:novel chromosome:V1.0:Gm11:36719683:36722379:1 gene:GLYMA11G34970 transcript:GLYMA11G34970.1 | 2 | 1456 | 0.04 | 19 | 19 | 3.5 | 5' CAATCAGA-ACGTGACACGTGA 3' |||o|||| ||||o| ||o||| 3' ATGGTTGGTCTGTGCATTTTGTACTTGAGTCT 5' |
626 | Glycine max | CAAACCTCCGTAGCCTGTATC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA15G06570.1 cdna:novel chromosome:V1.0:Gm15:4643944:4647571:-1 gene:GLYMA15G06570 transcript:GLYMA15G06570.1 | 1 | 2645 | 0 | 30 | 30 | 3 | 5' CAAACCTCCGTAGCCTGTATC 3' |||| |||||o|o||| |||| 3' CATAGTTTTGAGGCGTTGGA-ATAGTGTCAGG 5' |
627 | Glycine max | TGGAGAAGCAGGGCACGTGCA | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA17G10970.1 cdna:known chromosome:V1.0:Gm17:8247753:8249783:1 gene:GLYMA17G10970 transcript:GLYMA17G10970.1 | 2 | 918 | 0.02 | 23 | 4.6 | 2.5 | 5' TGGAGAAGCAGGGCACGTGCA 3' ||||||||||||||||||o 3' CCTAACCTCTTCGTCCCGTGCATTCGGCATAG 5' |
628 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA12G01730.2 cdna:novel chromosome:V1.0:Gm12:1061212:1065353:1 gene:GLYMA12G01730 transcript:GLYMA12G01730.2 | 2 | 576 | 0 | 60 | 12 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' ACTAAGGTGTCCGAAAGAACTTGCCAACGCCG 5' |
629 | Glycine max | TGCGAGTGTCTTCGCCTCTG | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA03G14888.1 cdna:novel chromosome:V1.0:Gm03:19079982:19089860:-1 gene:GLYMA03G14888 transcript:GLYMA03G14888.1 | 2 | 144 | 0 | 19 | 19 | 2.5 | 5' TGCGAGTGTCTTCGCCTCTG 3' oo|||||o||||| |||||| 3' CATCGTGCTCATAGAAGAGGAGACTTCGAGTA 5' |
630 | Glycine max | TCGGACCAGGCTTCATTCC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA05G21726.1 cdna:novel chromosome:V1.0:Gm05:26595908:26602630:1 gene:GLYMA05G21726 transcript:GLYMA05G21726.1 | 2 | 193 | 0 | 60 | 6 | 0.5 | 5' TCGGACCAGGCTTCATTCC 3' o|||||||||||||||||| 3' CTTAGGCCTGGTCCGAAGTAAGGTACGTAAAC 5' |
631 | Glycine max | TCGCTTGGTGCAGGTCGGGAA | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA10G30650.1 cdna:novel chromosome:V1.0:Gm10:39265566:39269217:1 gene:GLYMA10G30650 transcript:GLYMA10G30650.1 | 2 | 137 | 0.04 | 30 | 30 | 3 | 5' TCGCTTGGTGCAGGTCGGGAA 3' |||||o|| ||||o |||||| 3' AACTAGCGAGCCTCGTCTTGCCCTTTGTCTAC 5' |
632 | Glycine max | CTTGTTTGTGGTGATGTCT | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA04G10761.1 cdna:novel chromosome:V1.0:Gm04:9030583:9031520:-1 gene:GLYMA04G10761 transcript:GLYMA04G10761.1 | 2 | 15 | 0.01 | 29 | 14.5 | 1.5 | 5' CTTGTT-TGTGGTGATGTCT 3' |||||| ||||o|||||||| 3' ACTGAACAAGACACTACTACAGAAGTCG 5' |
633 | Glycine max | AAGCCAAGGATGACTTGCCGA | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA12G36540.2 cdna:novel chromosome:V1.0:Gm12:39579501:39585865:-1 gene:GLYMA12G36540 transcript:GLYMA12G36540.2 | 2 | 1163 | 0.05 | 30 | 4.28571 | 3.5 | 5' AAGCCAAGGATGACTTGCCGA 3' ||||||||o|||| ||||| 3' TTGATTCGGTTCTTACTTAACGGAAGATATGT 5' |
634 | Glycine max | TTGCCGATTCCACCCATTCCTA | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA06G45200.2 cdna:novel chromosome:V1.0:Gm06:48018462:48023777:1 gene:GLYMA06G45200 transcript:GLYMA06G45200.2 | 2 | 1018 | 0.01 | 5 | 1.66667 | 4 | 5' TTGCCGATTCCACCCATTCCTA 3' |||||o|||||| || ||||o 3' CGTAAACGGTTAAGGTTGGAAAGGGCACCGCC 5' |
635 | Glycine max | TGCCTGGCTCCCTGTATGCC | alignment | plot | GSM848963_Cot25_unique_seq_count | GLYMA20G32040.1 cdna:novel chromosome:V1.0:Gm20:40662803:40666056:-1 gene:GLYMA20G32040 transcript:GLYMA20G32040.1 | 2 | 1600 | 0 | 17 | 17 | 0 | 5' TGCCTGGCTCCCTGTATGCC 3' |||||||||||||||||||| 3' TCCTACGGACCGAGGGACATACGGAGGTCTTG 5' |
636 | Glycine max | TAGCATCATCAAGATTCACAT | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA11G05581.1 cdna:novel chromosome:V1.0:Gm11:3926579:3929091:1 gene:GLYMA11G05581 transcript:GLYMA11G05581.1 | 0 | 76 | 0.01 | 20 | 6.66667 | 3.5 | 5' TAGCATCATCAAGATTCAC-AT 3' o|||| ||||||||oo||| || 3' AAGGGTCGTCGTAGTTCTGGGTGGTAGTCTTA 5' |
637 | Glycine max | TCATTTTGCGTGCAATGATCTG | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA09G02920.2 cdna:novel chromosome:V1.0:Gm09:2023553:2036875:-1 gene:GLYMA09G02920 transcript:GLYMA09G02920.2 | 2 | 3072 | 0 | 18 | 9 | 2 | 5' TCATTTTGCGTGCAATGATCTG 3' |||||||| |||||||||||oo 3' TTAAAGTAAAACACACGTTACTAGGTTTACGT 5' |
638 | Glycine max | TGAGAGAAAGCCATGACTTAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA08G27941.2 cdna:novel chromosome:V1.0:Gm08:22208426:22211736:-1 gene:GLYMA08G27941 transcript:GLYMA08G27941.2 | 2 | 190 | 0 | 19 | 9.5 | 1 | 5' TGAGAGAAAGCCATGACTTAC 3' | ||||||||||||||||||| 3' CTCTAGTCTCTTTCGGTACTGAATGTTTGTGT 5' |
639 | Glycine max | TTCCACAGCTTTCTTGAACTGT | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA02G02942.2 cdna:novel chromosome:V1.0:Gm02:2254118:2257679:1 gene:GLYMA02G02942 transcript:GLYMA02G02942.2 | 2 | 549 | 0.04 | 20 | 10 | 3 | 5' TTCCACA-GCTTTCTTGAACTGT 3' o||| || ||||||o|||||||| 3' AACGAGGCGTCCGAAAGGACTTGACAAAAGAG 5' |
640 | Glycine max | TGACAGAAGAGAGTGAGCAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA02G13371.2 cdna:novel chromosome:V1.0:Gm02:11670695:11677264:-1 gene:GLYMA02G13371 transcript:GLYMA02G13371.2 | 2 | 1398 | 0 | 15 | 3 | 1 | 5' TGACAGAAGAGAGTGAGCAC 3' ||||||||||||| |||||| 3' CTAGACTGTCTTCTCTCTCTCGTGTCGAACTA 5' |
641 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA14G10090.1 cdna:novel chromosome:V1.0:Gm14:8190765:8195025:-1 gene:GLYMA14G10090 transcript:GLYMA14G10090.1 | 2 | 1104 | 0 | 40 | 13.3333 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' CGGAAGGTGTCCGAAAGAACTTGCTACCGCAG 5' |
642 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA10G01400.1 cdna:novel chromosome:V1.0:Gm10:1026614:1033301:1 gene:GLYMA10G01400 transcript:GLYMA10G01400.1 | 2 | 1170 | 0.02 | 40 | 5.71429 | 2 | 5' TTCCACAGCTTTCTTGA-AC 3' |||||| |||||||||| || 3' CAAGAAGGTGACGAAAGAACTATGGAAGTATC 5' |
643 | Glycine max | TCATCATCATCATCTTCTTCT | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA03G32020.3 cdna:novel chromosome:V1.0:Gm03:39830110:39837209:-1 gene:GLYMA03G32020 transcript:GLYMA03G32020.3 | 2 | 824 | 0 | 30 | 30 | 0 | 5' TCATCATCATCATCTTCTTCT 3' ||||||||||||||||||||| 3' AAGGAGTAGTAGTAGTAGAAGAAGAACGACAC 5' |
644 | Glycine max | TGTTGTTTTACCTATTCCACC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA16G25097.1 cdna:novel chromosome:V1.0:Gm16:29030264:29034103:-1 gene:GLYMA16G25097 transcript:GLYMA16G25097.1 | 0 | 792 | 0 | 3 | 3 | 1 | 5' TGTTGTTTTACCTATTCCACC 3' ||||||||||||o|o|||||| 3' GTTCACAACAAAATGGGTGAGGTGGCTCAGGT 5' |
645 | Glycine max | ATTGAGCCGCGTCAATATC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA20G28090.2 cdna:novel chromosome:V1.0:Gm20:37034336:37042352:1 gene:GLYMA20G28090 transcript:GLYMA20G28090.2 | 1 | 761 | 0.05 | 20 | 5 | 3.5 | 5' ATTGAGCCGCGTCAATATC 3' |||||o| |||| ||||| 3' GGACTAACTTGACGCA-TTATAACTTATTCTA 5' |
646 | Glycine max | TTGACAGAAGATAGAGAGCAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA0005S50.1 cdna:novel chromosome:V1.0:Gm05:16185:21667:1 gene:GLYMA0005S50 transcript:GLYMA0005S50.1 | 1 | 1912 | 0 | 40 | 10 | 2 | 5' TTGACAGAAGATAGAGAGCAC 3' |||||||||| ||||||||| 3' ACTCTACTGTCTTCTCTCTCTCGTGTTGTTCT 5' |
647 | Glycine max | TTGGCATTCTGTCCACCTCC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA08G11030.4 cdna:novel chromosome:V1.0:Gm08:8058634:8062620:1 gene:GLYMA08G11030 transcript:GLYMA08G11030.4 | 2 | 1264 | 0 | 8 | 2.66667 | 1 | 5' TTGGCATTCTGTCCACCTCC 3' ||||||||||||| |||||| 3' TGCAAACCGTAAGACAGTTGGAGGAAGGTGTT 5' |
648 | Glycine max | TTGCCGATTCCACCCATTCCTA | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA12G01010.6 cdna:novel chromosome:V1.0:Gm12:553523:557447:-1 gene:GLYMA12G01010 transcript:GLYMA12G01010.6 | 2 | 107 | 0.03 | 12 | 3 | 3.5 | 5' TTGCCGATTCCACCCATTCCTA 3' o||||| ||||| || |||||| 3' TGGTGACGGCGAAGGTAGGGAAGGATTTGGGA 5' |
649 | Glycine max | TCGGACCAGGCTTCATTCC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA12G08080.1 cdna:novel chromosome:V1.0:Gm12:5801673:5808673:1 gene:GLYMA12G08080 transcript:GLYMA12G08080.1 | 1 | 1424 | 0 | 40 | 20 | 1 | 5' TCGGACCAGGCTTCATTCC 3' o|||||||||||||||o|| 3' CTTAGGCCTGGTCCGAAGTAGGGTCCGTAGAC 5' |
650 | Glycine max | TCGGACCAGGCTTCATTCCC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA12G08080.1 cdna:novel chromosome:V1.0:Gm12:5801673:5808673:1 gene:GLYMA12G08080 transcript:GLYMA12G08080.1 | 1 | 1424 | 0 | 40 | 20 | 1.5 | 5' TCGGACCAGGCTTCATTCCC 3' o||||||||||||||| ||| 3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAGA 5' |
651 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA03G35010.3 cdna:novel chromosome:V1.0:Gm03:42329293:42333139:1 gene:GLYMA03G35010 transcript:GLYMA03G35010.3 | 1 | 1191 | 0 | 20 | 5 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' ATCAAGGTGTCCGAAAGAACTTGCCAAAGAAG 5' |
652 | Glycine max | ATATAGCATCGTGAGCAATCA | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA03G38100.1 cdna:known chromosome:V1.0:Gm03:44505410:44509305:-1 gene:GLYMA03G38100 transcript:GLYMA03G38100.1 | 2 | 788 | 0.04 | 20 | 20 | 3 | 5' ATATAGCATCGTGA-GCAATCA 3' |||o||||||||o| ||| ||| 3' TTCGTATGTCGTAGCATTACGTAAGTTATAAG 5' |
653 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA19G37740.1 cdna:novel chromosome:V1.0:Gm19:44838730:44842363:1 gene:GLYMA19G37740 transcript:GLYMA19G37740.1 | 1 | 943 | 0 | 20 | 5 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' ATCAAGGTGTCCGAAAGAACTTGCCAAAGAAG 5' |
654 | Glycine max | TGAAGCTGCCAGCATGATCT | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA11G31940.2 cdna:novel chromosome:V1.0:Gm11:33249980:33257973:-1 gene:GLYMA11G31940 transcript:GLYMA11G31940.2 | 0 | 2802 | 0 | 40 | 20 | 3 | 5' TGAAGCTGCCAGCATGATCT 3' ||||||||||| |||||| 3' CTTGTGTTCGACGGTCGGACTAGATTCTCCCA 5' |
655 | Glycine max | TTGACAGAAGATAGAGAGCAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA11G36980.3 cdna:known chromosome:V1.0:Gm11:38244535:38250746:1 gene:GLYMA11G36980 transcript:GLYMA11G36980.3 | 2 | 3527 | 0 | 21 | 5.25 | 1 | 5' TTGACAGAAGATAGAGAGCAC 3' ||||||||||| ||||||||| 3' AAGCAACTGTCTTCTCTCTCTCGTGCCAATTG 5' |
656 | Glycine max | TGAAGCTGCCAGCATGATCT | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA13G29320.1 cdna:novel chromosome:V1.0:Gm13:32246000:32253054:1 gene:GLYMA13G29320 transcript:GLYMA13G29320.1 | 1 | 3359 | 0.03 | 40 | 10 | 3 | 5' TGAAGCTGCCAGCATGATCT 3' ||||||||||| |||||| 3' TTTATGTTCGACGGTCGGACTAGAGTGTCCCA 5' |
657 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA02G30885.1 cdna:novel chromosome:V1.0:Gm02:33329697:33330499:-1 gene:GLYMA02G30885 transcript:GLYMA02G30885.1 | 1 | 385 | 0.02 | 3 | 1.5 | 2.5 | 5' TTCCACAGCTTTCTTGAAC 3' o||||||||||||||| | 3' AACCGAGGTGTCGAAAGAACCAGACAAAGAAC 5' |
658 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA14G10100.2 cdna:novel chromosome:V1.0:Gm14:8199978:8204920:-1 gene:GLYMA14G10100 transcript:GLYMA14G10100.2 | 0 | 1147 | 0 | 36 | 12 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' CGGAAGGTGTCCGAAAGAACTTGCTACCGCAG 5' |
659 | Glycine max | TTGCCGATTCCACCCATTCCTA | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA13G37990.1 cdna:novel chromosome:V1.0:Gm13:38922846:38923913:1 gene:GLYMA13G37990 transcript:GLYMA13G37990.1 | 1 | 340 | 0 | 19 | 19 | 3.5 | 5' TTGCCGATTCCACCCATTCCTA 3' |||||o||o||| ||||o||| 3' TGGGAACGGTTAGGGTCGGTAGGGAATTATTT 5' |
660 | Glycine max | TGCACTGCCTCTTTCCTGGCT | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA07G13840.1 cdna:novel chromosome:V1.0:Gm07:12990407:12992274:-1 gene:GLYMA07G13840 transcript:GLYMA07G13840.1 | 2 | 884 | 0.01 | 7 | 7 | 2.5 | 5' TGCACTGCCTCTTTCCTGGCT 3' ||||||||||||o|||o||o 3' TTTGTCGTGACGGAGAAGGGATCGGGTACTTT 5' |
661 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA13G16924.2 cdna:novel chromosome:V1.0:Gm13:20777152:20779829:-1 gene:GLYMA13G16924 transcript:GLYMA13G16924.2 | 0 | 769 | 0 | 40 | 8 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' TTGAAGGTGTCCGAAAGAACTTGCTAAAAAGG 5' |
662 | Glycine max | TCATTTTGCGTGCAATGATCTG | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA20G11300.1 cdna:novel chromosome:V1.0:Gm20:15974440:15978138:1 gene:GLYMA20G11300 transcript:GLYMA20G11300.1 | 1 | 752 | 0.03 | 20 | 10 | 4 | 5' TCA-TTTTGCGTGCAATGATCTG 3' ||| |||o||||||| |o| ||| 3' GTTAGTGAAAGCGCACGTAATTTGACCACGAC 5' |
663 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA02G01370.5 cdna:novel chromosome:V1.0:Gm02:988758:995852:1 gene:GLYMA02G01370 transcript:GLYMA02G01370.5 | 0 | 1154 | 0 | 40 | 5.71429 | 2 | 5' TTCCACAGCTTTCTTGAAC 3' |||||| |||||||||| | 3' CAAGAAGGTGACGAAAGAACTAGGGAAGTATC 5' |
664 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA02G27016.1 cdna:novel chromosome:V1.0:Gm02:28170820:28176308:1 gene:GLYMA02G27016 transcript:GLYMA02G27016.1 | 0 | 492 | 0 | 40 | 5.71429 | 3 | 5' TTCCACAGCTTTCTTGAAC 3' |||||| |||||||||| 3' CAAGAAGGTGACGAAAGAACTAAGGACTTTGT 5' |
665 | Glycine max | GGATATTGGTCCGGTTCAATA | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA06G09050.2 cdna:novel chromosome:V1.0:Gm06:6647326:6651348:1 gene:GLYMA06G09050 transcript:GLYMA06G09050.2 | 2 | 672 | 0.04 | 19 | 6.33333 | 3.5 | 5' GGATATTGGTCC-GGTTCAATA 3' o||| ||||||| |||o|||o| 3' GTCTTCTAAAACCAGGTCCAGGTTGTCGTTCT 5' |
666 | Glycine max | TGAAGCTGCCAGCATGATCTG | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA02G40650.2 cdna:novel chromosome:V1.0:Gm02:45888235:45899367:-1 gene:GLYMA02G40650 transcript:GLYMA02G40650.2 | 1 | 2942 | 0.02 | 40 | 10 | 3.5 | 5' TGAAGCTGCCAGCATGATCTG 3' ||||||||||| ||||||o 3' CTTATGTTCGACGGTCGGACTAGATTCTCCCA 5' |
667 | Glycine max | TTTGGATTGAAGGGAGCTC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA06G47000.2 cdna:novel chromosome:V1.0:Gm06:49543622:49548924:-1 gene:GLYMA06G47000 transcript:GLYMA06G47000.2 | 2 | 1343 | 0 | 6 | 1.5 | 1 | 5' TTTGGATTGAAGGGAGCTC 3' |||||| |||||||||||| 3' CCTTAAACCTCACTTCCCTCGAGACTGAAGTG 5' |
668 | Glycine max | TGCCTGGCTCCCTGTATGCC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA10G35481.1 cdna:novel chromosome:V1.0:Gm10:43704337:43707929:1 gene:GLYMA10G35481 transcript:GLYMA10G35481.1 | 2 | 1609 | 0 | 40 | 10 | 0 | 5' TGCCTGGCTCCCTGTATGCC 3' |||||||||||||||||||| 3' TCGTACGGACCGAGGGACATACGGAGGTCTTG 5' |
669 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA16G00971.4 cdna:novel chromosome:V1.0:Gm16:636293:639481:-1 gene:GLYMA16G00971 transcript:GLYMA16G00971.4 | 0 | 955 | 0 | 40 | 8 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' TTGAAGGTGTCCGAAAGAACTTGCCAAAGACG 5' |
670 | Glycine max | TCGGACCAGGCTTCATTCC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA05G30000.1 cdna:novel chromosome:V1.0:Gm05:35421769:35428492:1 gene:GLYMA05G30000 transcript:GLYMA05G30000.1 | 2 | 1080 | 0 | 40 | 8 | 1 | 5' TCGGACCAGGCTTCATTCC 3' o|||||||||||||||o|| 3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAGAC 5' |
671 | Glycine max | TCGGACCAGGCTTCATTCCC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA05G30000.1 cdna:novel chromosome:V1.0:Gm05:35421769:35428492:1 gene:GLYMA05G30000 transcript:GLYMA05G30000.1 | 2 | 1080 | 0 | 40 | 8 | 1.5 | 5' TCGGACCAGGCTTCATTCCC 3' o||||||||||||||| ||| 3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5' |
672 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA01G44471.1 cdna:known chromosome:V1.0:Gm01:55141915:55148004:-1 gene:GLYMA01G44471 transcript:GLYMA01G44471.1 | 2 | 835 | 0 | 40 | 8 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' ACTAAGGTGTCCGAAAGAACTTGCCAACGCCG 5' |
673 | Glycine max | TCGGACCAGGCTTCATTCC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA09G02750.1 cdna:novel chromosome:V1.0:Gm09:1901637:1907522:-1 gene:GLYMA09G02750 transcript:GLYMA09G02750.1 | 2 | 968 | 0 | 40 | 8 | 1 | 5' TCGGACCAGGCTTCATTCC 3' o|||||||||||||||o|| 3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAGAC 5' |
674 | Glycine max | TCGGACCAGGCTTCATTCCC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA09G02750.1 cdna:novel chromosome:V1.0:Gm09:1901637:1907522:-1 gene:GLYMA09G02750 transcript:GLYMA09G02750.1 | 2 | 968 | 0 | 40 | 8 | 1.5 | 5' TCGGACCAGGCTTCATTCCC 3' o||||||||||||||| ||| 3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5' |
675 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA11G01060.1 cdna:novel chromosome:V1.0:Gm11:573836:577693:1 gene:GLYMA11G01060 transcript:GLYMA11G01060.1 | 2 | 486 | 0 | 40 | 8 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' ACTAAGGTGTCCGAAAGAACTTGCCAACGCCG 5' |
676 | Glycine max | TCGGACCAGGCTTCATTCC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA08G21620.3 cdna:novel chromosome:V1.0:Gm08:16441681:16450105:-1 gene:GLYMA08G21620 transcript:GLYMA08G21620.3 | 2 | 866 | 0 | 40 | 4 | 0.5 | 5' TCGGACCAGGCTTCATTCC 3' o|||||||||||||||||| 3' CTTAGGCCTGGTCCGAAGTAAGGTCCGTAAAC 5' |
677 | Glycine max | TTGAGCCGTGCCAATATCA | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA03G03760.2 cdna:novel chromosome:V1.0:Gm03:3581308:3584468:-1 gene:GLYMA03G03760 transcript:GLYMA03G03760.2 | 1 | 1642 | 0 | 40 | 13.3333 | 1.5 | 5' TTGAGCCGTGCCAATATCA 3' ||||||||o||||||||| 3' CACTAACTCGGCGCGGTTATAGGGAACGCGTA 5' |
678 | Glycine max | ATTGAGCCGCGTCAATATC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA03G03760.2 cdna:novel chromosome:V1.0:Gm03:3581308:3584468:-1 gene:GLYMA03G03760 transcript:GLYMA03G03760.2 | 2 | 1643 | 0 | 20 | 6.66667 | 0.5 | 5' ATTGAGCCGCGTCAATATC 3' |||||||||||o||||||| 3' CCACTAACTCGGCGCGGTTATAGGGAACGCGT 5' |
679 | Glycine max | TGATTGAGCCGTGCCAATAT | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA03G03760.2 cdna:novel chromosome:V1.0:Gm03:3581308:3584468:-1 gene:GLYMA03G03760 transcript:GLYMA03G03760.2 | 1 | 1645 | 0 | 40 | 13.3333 | 0.5 | 5' TGATTGAGCCGTGCCAATAT 3' |||||||||||o|||||||| 3' GACCACTAACTCGGCGCGGTTATAGGGAACGC 5' |
680 | Glycine max | TGAGCCGTGCCAATATCAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA03G03760.2 cdna:novel chromosome:V1.0:Gm03:3581308:3584468:-1 gene:GLYMA03G03760 transcript:GLYMA03G03760.2 | 2 | 1641 | 0 | 18 | 6 | 1.5 | 5' TGAGCCGTGCCAATATCAC 3' |||||||o||||||||| | 3' ACTAACTCGGCGCGGTTATAGGGAACGCGTAC 5' |
681 | Glycine max | CAGCCAAGGATGACTTGCCG | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA02G12185.1 cdna:novel chromosome:V1.0:Gm02:10421144:10423720:1 gene:GLYMA02G12185 transcript:GLYMA02G12185.1 | 2 | 1116 | 0 | 5 | 1.25 | 1.5 | 5' CAGCCAAGGATGACTTGCCG 3' ||||||o|||||||||||| 3' GTACATCGGTTTCTACTGAACGGCTTAAATGG 5' |
682 | Glycine max | TGCCTGGCTCCCTGTATGCC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA12G08110.1 cdna:novel chromosome:V1.0:Gm12:5840398:5844362:-1 gene:GLYMA12G08110 transcript:GLYMA12G08110.1 | 2 | 1640 | 0 | 40 | 10 | 1 | 5' TGCCTGGCTCCCTGTATGCC 3' ||||||||||||||||| || 3' TCGTACGGACCGAGGGACATAGGGACGTCCTC 5' |
683 | Glycine max | TCGGACCAGGCTTCATTCC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA15G13640.1 cdna:novel chromosome:V1.0:Gm15:10250637:10256541:-1 gene:GLYMA15G13640 transcript:GLYMA15G13640.1 | 2 | 945 | 0 | 40 | 4 | 1 | 5' TCGGACCAGGCTTCATTCC 3' o|||||||||||||||o|| 3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAGAC 5' |
684 | Glycine max | TCGGACCAGGCTTCATTCCC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA15G13640.1 cdna:novel chromosome:V1.0:Gm15:10250637:10256541:-1 gene:GLYMA15G13640 transcript:GLYMA15G13640.1 | 2 | 945 | 0 | 40 | 4 | 1.5 | 5' TCGGACCAGGCTTCATTCCC 3' o||||||||||||||| ||| 3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5' |
685 | Glycine max | ATTGAGCCGCGTCAATATC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA01G33270.1 cdna:novel chromosome:V1.0:Gm01:45164207:45167759:-1 gene:GLYMA01G33270 transcript:GLYMA01G33270.1 | 2 | 1209 | 0 | 20 | 6.66667 | 0.5 | 5' ATTGAGCCGCGTCAATATC 3' |||||||||||o||||||| 3' CCACTAACTCGGCGCGGTTATAGGGAACGCGT 5' |
686 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA17G35100.2 cdna:novel chromosome:V1.0:Gm17:39088426:39092940:1 gene:GLYMA17G35100 transcript:GLYMA17G35100.2 | 2 | 1159 | 0.01 | 40 | 13.3333 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' CGGAAGGTGTCCGAAAGAACTTGCTACCGCAG 5' |
687 | Glycine max | TCCAAAGGGATCGCATTGATC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA02G17170.2 cdna:novel chromosome:V1.0:Gm02:15488295:15491581:1 gene:GLYMA02G17170 transcript:GLYMA02G17170.2 | 2 | 1741 | 0 | 20 | 5 | 1 | 5' TCCAAAGGGATCGCATTGATC 3' |||||||||||||||||| || 3' CTGTAGGTTTCCCTAGCGTAAC-AGAGGTCGA 5' |
688 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA01G34650.2 cdna:novel chromosome:V1.0:Gm01:47081811:47085604:1 gene:GLYMA01G34650 transcript:GLYMA01G34650.2 | 0 | 793 | 0 | 20 | 6.66667 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' ACAAAGGTGTCCGAAAGAACTTGCTAAAGCTG 5' |
689 | Glycine max | TTGACAGAAGATAGAGAGCAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA19G32800.1 cdna:novel chromosome:V1.0:Gm19:40502386:40507238:-1 gene:GLYMA19G32800 transcript:GLYMA19G32800.1 | 1 | 1139 | 0 | 40 | 20 | 1 | 5' TTGACAGAAGATAGAGAGCAC 3' ||||||||||| ||||||||| 3' ACTAAACTGTCTTCTCTCTCTCGTGTCGAGCA 5' |
690 | Glycine max | TTGAGCCGTGCCAATATCA | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA01G33270.1 cdna:novel chromosome:V1.0:Gm01:45164207:45167759:-1 gene:GLYMA01G33270 transcript:GLYMA01G33270.1 | 2 | 1208 | 0 | 40 | 13.3333 | 1.5 | 5' TTGAGCCGTGCCAATATCA 3' ||||||||o||||||||| 3' CACTAACTCGGCGCGGTTATAGGGAACGCGTA 5' |
691 | Glycine max | TGCCTGGCTCCCTGTATGCC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA12G29720.1 cdna:novel chromosome:V1.0:Gm12:33175269:33178907:-1 gene:GLYMA12G29720 transcript:GLYMA12G29720.1 | 0 | 1654 | 0 | 40 | 40 | 0 | 5' TGCCTGGCTCCCTGTATGCC 3' |||||||||||||||||||| 3' TCGTACGGACCGAGGGACATACGGACGTCCTC 5' |
692 | Glycine max | TTGAGCCGTGCCAATATCA | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA01G18040.1 cdna:novel chromosome:V1.0:Gm01:22484145:22487576:-1 gene:GLYMA01G18040 transcript:GLYMA01G18040.1 | 1 | 1768 | 0 | 40 | 20 | 1.5 | 5' TTGAGCCGTGCCAATATCA 3' ||||||||o||||||||| 3' CACTAACTCGGCGCGGTTATAGGGTACGCGCT 5' |
693 | Glycine max | TGCCTGGCTCCCTGTATGCC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA14G33730.1 cdna:novel chromosome:V1.0:Gm14:41889885:41894154:1 gene:GLYMA14G33730 transcript:GLYMA14G33730.1 | 1 | 1184 | 0 | 40 | 20 | 0.5 | 5' TGCCTGGCTCCCTGTATGCC 3' ||||||||||||||o||||| 3' TAGTACGGACCGAGGGACGTACGGTCGTCCTT 5' |
694 | Glycine max | TGATTGAGCCGTGCCAATAT | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA01G33270.1 cdna:novel chromosome:V1.0:Gm01:45164207:45167759:-1 gene:GLYMA01G33270 transcript:GLYMA01G33270.1 | 2 | 1211 | 0 | 40 | 13.3333 | 0.5 | 5' TGATTGAGCCGTGCCAATAT 3' |||||||||||o|||||||| 3' GACCACTAACTCGGCGCGGTTATAGGGAACGC 5' |
695 | Glycine max | TGATTGAGCCGTGCCAATAT | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA01G18040.1 cdna:novel chromosome:V1.0:Gm01:22484145:22487576:-1 gene:GLYMA01G18040 transcript:GLYMA01G18040.1 | 1 | 1771 | 0 | 40 | 20 | 0.5 | 5' TGATTGAGCCGTGCCAATAT 3' |||||||||||o|||||||| 3' AACCACTAACTCGGCGCGGTTATAGGGTACGC 5' |
696 | Glycine max | TCCAAAGGGATCGCATTGATC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA10G02630.1 cdna:novel chromosome:V1.0:Gm10:1861030:1864010:-1 gene:GLYMA10G02630 transcript:GLYMA10G02630.1 | 2 | 2166 | 0 | 20 | 5 | 1 | 5' TCCAAAGGGATCGCATTGATC 3' |||||||||||||||||| || 3' CTGTAGGTTTCCCTAGCGTAAC-AGAGGTCGA 5' |
697 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA01G35145.1 cdna:novel chromosome:V1.0:Gm01:47696214:47700220:1 gene:GLYMA01G35145 transcript:GLYMA01G35145.1 | 0 | 556 | 0 | 40 | 20 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' ACTAAGGTGTCCGAAAGAACTTGCCATTGCGG 5' |
698 | Glycine max | TTCCACAGCTTTCTTGAACT | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA11G12140.5 cdna:novel chromosome:V1.0:Gm11:8671668:8673811:1 gene:GLYMA11G12140 transcript:GLYMA11G12140.5 | 0 | 645 | 0.04 | 20 | 3.33333 | 4 | 5' TTCCACAGCTTTCTTGAACT 3' ||||| ||||| |||| || 3' AGACAAGGTTTCGAA-GAACACGAAACTAAAG 5' |
699 | Glycine max | TGCCTGGCTCCCTGTATGCC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA04G43350.1 cdna:novel chromosome:V1.0:Gm04:48947065:48951466:1 gene:GLYMA04G43350 transcript:GLYMA04G43350.1 | 0 | 1540 | 0 | 34 | 34 | 0.5 | 5' TGCCTGGCTCCCTGTATGCC 3' ||||||||||||||o||||| 3' TAGTACGGACCGAGGGACGTACGGTCGTCCTT 5' |
700 | Glycine max | TGAAGCTGCCAGCATGATCTA | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA14G38940.1 cdna:novel chromosome:V1.0:Gm14:48094947:48103242:-1 gene:GLYMA14G38940 transcript:GLYMA14G38940.1 | 2 | 2943 | 0.01 | 20 | 4 | 3 | 5' TGAAGCTGCCAGCATGATCTA 3' ||||||||||| ||||||| 3' CTTATGTTCGACGGTCGGACTAGATTCTCCCA 5' |
701 | Glycine max | TGCCTGGCTCCCTGTATGCC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA13G20382.2 cdna:novel chromosome:V1.0:Gm13:23822784:23826849:-1 gene:GLYMA13G20382 transcript:GLYMA13G20382.2 | 2 | 1754 | 0 | 20 | 5 | 0.5 | 5' TGCCTGGCTCCCTGTATGCC 3' ||||||||||||||o||||| 3' TCGTACGGACCGAGGGACGTACGGTCGTCCTC 5' |
702 | Glycine max | ATGAAGTGTTTGGGGGAACTC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA14G34210.2 cdna:novel chromosome:V1.0:Gm14:42623747:42629645:-1 gene:GLYMA14G34210 transcript:GLYMA14G34210.2 | 2 | 484 | 0.05 | 15 | 7.5 | 3 | 5' ATGAAGTGTTTGGGGGAACTC 3' ||||||||||||| ||||| 3' AACAAACTTCACAAACCCACTTGAAACCAGTC 5' |
703 | Glycine max | TCATCATCATCATCATCTTGC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA13G42580.1 cdna:novel chromosome:V1.0:Gm13:42527796:42529226:-1 gene:GLYMA13G42580 transcript:GLYMA13G42580.1 | 1 | 1007 | 0.04 | 11 | 1.375 | 2.5 | 5' TCATCATCATCATCATCTTGC 3' ||||||o|||||||||| | | 3' TAGTAGTAGTGGTAGTAGTAGTA-GAAGTACG 5' |
704 | Glycine max | ATTGAGCCGCGTCAATATC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA13G10490.2 cdna:novel chromosome:V1.0:Gm13:12349681:12355036:-1 gene:GLYMA13G10490 transcript:GLYMA13G10490.2 | 0 | 2148 | 0.02 | 19 | 9.5 | 3.5 | 5' ATTGAGCCGCGTCAATATC 3' ||| ||| || ||||o||| 3' TTGTTAA-TCGCCGAAGTTGTAGTTTTGGAGA 5' |
705 | Glycine max | TTGCCGATTCCACCCATTCCTA | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA08G12860.1 cdna:novel chromosome:V1.0:Gm08:9404952:9417893:1 gene:GLYMA08G12860 transcript:GLYMA08G12860.1 | 1 | 1964 | 0.01 | 20 | 10 | 4 | 5' TTGCCGATTCCACCCATTCCTA 3' |||||||||||| | ||||| 3' AATACACGGCTAAGGTGCGGAAGGAATGTAGT 5' |
706 | Glycine max | CAGAGGAAGCAGCACTTGTACC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA02G35260.2 cdna:novel chromosome:V1.0:Gm02:39988375:40003681:1 gene:GLYMA02G35260 transcript:GLYMA02G35260.2 | 2 | 5990 | 0.03 | 20 | 10 | 3.5 | 5' CAGAGGAAGCAGCACTTGTACC 3' ||||o|| |||||| ||| ||| 3' CCTTGTCTTCTACGTCGTCAACTTGGTAACTA 5' |
707 | Glycine max | TGGAGAAGCAGGGCACGTGCA | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA05G00930.1 cdna:novel chromosome:V1.0:Gm05:542676:544662:-1 gene:GLYMA05G00930 transcript:GLYMA05G00930.1 | 2 | 883 | 0.01 | 37 | 7.4 | 2.5 | 5' TGGAGAAGCAGGGCACGTGCA 3' ||||||||||||||||||o 3' CCTAACCTCTTCGTCCCGTGCATTCGGCTTAG 5' |
708 | Glycine max | TGACAGAAGAGAGTGAGCAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA01G08056.2 cdna:novel chromosome:V1.0:Gm01:9051047:9057050:-1 gene:GLYMA01G08056 transcript:GLYMA01G08056.2 | 2 | 1284 | 0 | 15 | 3 | 1 | 5' TGACAGAAGAGAGTGAGCAC 3' ||||||||||||| |||||| 3' CTAGACTGTCTTCTCTCTCTCGTGTCGAACTA 5' |
709 | Glycine max | TGGAGAAGCAGGGCACGTGCA | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA08G18470.1 cdna:known chromosome:V1.0:Gm08:13867947:13872796:1 gene:GLYMA08G18470 transcript:GLYMA08G18470.1 | 0 | 730 | 0 | 12 | 6 | 2 | 5' TGGAGAAGCAGGGCACGTGCA 3' |||||||||||||||| ||| 3' TTTTACCTCTTCGTCCCGTGAACGAGTTTGAG 5' |
710 | Glycine max | TGAAGCTGCCAGCATGATCTGA | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA13G29320.2 cdna:novel chromosome:V1.0:Gm13:32246000:32253106:1 gene:GLYMA13G29320 transcript:GLYMA13G29320.2 | 1 | 3356 | 0.05 | 40 | 10 | 4 | 5' TGAAGCTGCCAGCATGATCTGA 3' ||||||||||| |||||| | 3' TTTATGTTCGACGGTCGGACTAGAGTGTCCCA 5' |
711 | Glycine max | TTGACAGAAGATAGAGAGCAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA18G00903.1 cdna:novel chromosome:V1.0:Gm18:426939:431809:1 gene:GLYMA18G00903 transcript:GLYMA18G00903.1 | 0 | 2437 | 0 | 40 | 40 | 1 | 5' TTGACAGAAGATAGAGAGCAC 3' ||||||||||| ||||||||| 3' AAGCAACTGTCTTCTCTCTCTCGTGCCAATTG 5' |
712 | Glycine max | TTGAGCCGTGCCAATATCA | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA11G17490.1 cdna:novel chromosome:V1.0:Gm11:13613694:13616986:1 gene:GLYMA11G17490 transcript:GLYMA11G17490.1 | 1 | 1658 | 0 | 40 | 20 | 1.5 | 5' TTGAGCCGTGCCAATATCA 3' ||||||||o||||||||| 3' CACTAACTCGGCGCGGTTATAGGGCACGCGCT 5' |
713 | Glycine max | TTTGGATTGAAGGGAGCTC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA13G25716.2 cdna:novel chromosome:V1.0:Gm13:28929349:28934215:1 gene:GLYMA13G25716 transcript:GLYMA13G25716.2 | 2 | 1830 | 0.03 | 11 | 2.2 | 2 | 5' TTTGGATTGAAGGGAGCTC 3' ||||| |||||||||||| 3' CCTATAACCTCACTTCCCTCGAGGTTGAAGTA 5' |
714 | Glycine max | TGATTGAGCCGTGCCAATAT | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA11G17490.1 cdna:novel chromosome:V1.0:Gm11:13613694:13616986:1 gene:GLYMA11G17490 transcript:GLYMA11G17490.1 | 1 | 1661 | 0 | 40 | 20 | 0.5 | 5' TGATTGAGCCGTGCCAATAT 3' |||||||||||o|||||||| 3' AACCACTAACTCGGCGCGGTTATAGGGCACGC 5' |
715 | Glycine max | TGGAGAAGCAGGGCACGTGCA | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA06G21020.1 cdna:known chromosome:V1.0:Gm06:17431771:17433898:1 gene:GLYMA06G21020 transcript:GLYMA06G21020.1 | 2 | 1106 | 0 | 37 | 7.4 | 2.5 | 5' TGGAGAAGCAGGGCACGTGCA 3' ||||||||||||||||||o 3' CCTAACCTCTTCGTCCCGTGCATTCGTCTTAG 5' |
716 | Glycine max | TGAAGCTGCCAGCATGATCT | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA15G09750.2 cdna:novel chromosome:V1.0:Gm15:6969486:6976414:-1 gene:GLYMA15G09750 transcript:GLYMA15G09750.2 | 1 | 3239 | 0.03 | 40 | 10 | 3 | 5' TGAAGCTGCCAGCATGATCT 3' ||||||||||| |||||| 3' TTTATGTTCGACGGTCGGACTAGAGTGTCCCA 5' |
717 | Glycine max | CAATCAGAACGTGACACGTGA | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA06G02900.1 cdna:novel chromosome:V1.0:Gm06:2007259:2009448:-1 gene:GLYMA06G02900 transcript:GLYMA06G02900.1 | 2 | 1491 | 0.02 | 20 | 20 | 3 | 5' CAATCAGAACGTGACACGTGA 3' |||o|||||||o||| ||| | 3' GGTCGTTGGTCTTGCGCTG-GCAGTGCTTCGT 5' |
718 | Glycine max | TTGACAGAAGATAGAGAGCAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA04G32002.1 cdna:novel chromosome:V1.0:Gm04:36451982:36456753:1 gene:GLYMA04G32002 transcript:GLYMA04G32002.1 | 2 | 1937 | 0 | 40 | 10 | 2 | 5' TTGACAGAAGATAGAGAGCAC 3' |||||||||| ||||||||| 3' ACTCTACTGTCTTCTCTCTCTCGTGTCGGTCT 5' |
719 | Glycine max | TTGACAGAAGATAGAGAGCAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA17G08840.2 cdna:novel chromosome:V1.0:Gm17:6526544:6532020:-1 gene:GLYMA17G08840 transcript:GLYMA17G08840.2 | 2 | 1901 | 0 | 40 | 10 | 2 | 5' TTGACAGAAGATAGAGAGCAC 3' |||||||||| ||||||||| 3' ACTCTACTGTCTTCTCTCTCTCGTGTTGTTCT 5' |
720 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA09G34565.1 cdna:novel chromosome:V1.0:Gm09:40925699:40929850:1 gene:GLYMA09G34565 transcript:GLYMA09G34565.1 | 1 | 610 | 0 | 40 | 20 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' ACTAAGGTGTCCGAAAGAACTTGCCATTGCTG 5' |
721 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA04G40880.2 cdna:novel chromosome:V1.0:Gm04:46789378:46792963:-1 gene:GLYMA04G40880 transcript:GLYMA04G40880.2 | 0 | 1113 | 0 | 40 | 8 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' TTGAAGGTGTCCGAAAGAACTTGCCCCTGCCG 5' |
722 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA19G40610.1 cdna:novel chromosome:V1.0:Gm19:46975408:46981467:-1 gene:GLYMA19G40610 transcript:GLYMA19G40610.1 | 0 | 1153 | 0.01 | 40 | 5.71429 | 3 | 5' TTCCACAGCTTTCTTGA-AC 3' |||||| ||||| |||| || 3' CAAGAAGGTGACGAAAAAACTATGGAAGTACC 5' |
723 | Glycine max | TGCCTGGCTCCCTGTATGCC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA13G02410.1 cdna:novel chromosome:V1.0:Gm13:2276691:2281351:-1 gene:GLYMA13G02410 transcript:GLYMA13G02410.1 | 0 | 1530 | 0 | 40 | 40 | 0.5 | 5' TGCCTGGCTCCCTGTATGCC 3' ||||||||||||||o||||| 3' TAGTACGGACCGAGGGACGTACGGTCGTCCTT 5' |
724 | Glycine max | TTCCACAGCTTTCTTGAACTG | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA01G04610.4 cdna:novel chromosome:V1.0:Gm01:4217441:4221353:-1 gene:GLYMA01G04610 transcript:GLYMA01G04610.4 | 2 | 397 | 0.05 | 9 | 4.5 | 3 | 5' TTCCAC-AGCTTTCTTGAACTG 3' o||| | |||||||o||||||| 3' AACGAGGCGTTCGAAAGGACTTGACCAAAGAG 5' |
725 | Glycine max | TCAAAGGGAGTTGTAGGGGAA | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA14G24860.1 cdna:known chromosome:V1.0:Gm14:29966155:29973516:1 gene:GLYMA14G24860 transcript:GLYMA14G24860.1 | 1 | 118 | 0.01 | 40 | 40 | 3.5 | 5' TCAAAGGGAGTTGTAGGGGAA 3' |||||||||||| ||o||| 3' ATGCCGTTTCCCTCAACTTCTCCTAGGAGTTT 5' |
726 | Glycine max | TCCAAAGGGATCGCATTGATC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA03G36770.1 cdna:novel chromosome:V1.0:Gm03:43630257:43634178:1 gene:GLYMA03G36770 transcript:GLYMA03G36770.1 | 2 | 1806 | 0 | 33 | 16.5 | 1 | 5' TCCAAAGGGATCGCATTGATC 3' |||||||||||||||||| || 3' CTGTAGGTTTCCCTAGCGTAAC-AGAGGTCGA 5' |
727 | Glycine max | CGATTACCAGAAGGCTTATTAG | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA14G35070.1 cdna:novel chromosome:V1.0:Gm14:43792798:43799059:-1 gene:GLYMA14G35070 transcript:GLYMA14G35070.1 | 2 | 1579 | 0.04 | 20 | 10 | 4 | 5' CGATTACCAGAAGGCTTATTAG 3' ||o| ||||||||||o|| || 3' TTGAACTGACGGTCTTCCGAGTA-TCAAACGT 5' |
728 | Glycine max | TCGGACCAGGCTTCATTCC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA06G09100.1 cdna:novel chromosome:V1.0:Gm06:6696969:6703161:1 gene:GLYMA06G09100 transcript:GLYMA06G09100.1 | 2 | 957 | 0.01 | 40 | 4 | 1 | 5' TCGGACCAGGCTTCATTCC 3' o|||||||||||||||o|| 3' CTTAGGCCTGGTCCGAAGTAGGGTCCGTAAAC 5' |
729 | Glycine max | TCGGACCAGGCTTCATTCCC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA06G09100.1 cdna:novel chromosome:V1.0:Gm06:6696969:6703161:1 gene:GLYMA06G09100 transcript:GLYMA06G09100.1 | 2 | 957 | 0.01 | 40 | 4 | 1.5 | 5' TCGGACCAGGCTTCATTCCC 3' o||||||||||||||| ||| 3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAAA 5' |
730 | Glycine max | TGCCTGGCTCCCTGTATGCC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA10G06080.2 cdna:novel chromosome:V1.0:Gm10:4819433:4824893:-1 gene:GLYMA10G06080 transcript:GLYMA10G06080.2 | 2 | 2010 | 0 | 20 | 5 | 0.5 | 5' TGCCTGGCTCCCTGTATGCC 3' ||||||||||||||o||||| 3' TCGTACGGACCGAGGGACGTACGGTCGTCCAC 5' |
731 | Glycine max | TTGACAGAAGATAGAGAGCAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA02G30670.2 cdna:novel chromosome:V1.0:Gm02:32711340:32716829:-1 gene:GLYMA02G30670 transcript:GLYMA02G30670.2 | 0 | 962 | 0 | 40 | 40 | 1 | 5' TTGACAGAAGATAGAGAGCAC 3' ||||||||||| ||||||||| 3' ACTGAACTGTCTTCTCTCTCTCGTGTCAAACT 5' |
732 | Glycine max | TTTGGATTGAAGGGAGCTC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA15G35860.4 cdna:novel chromosome:V1.0:Gm15:40661766:40666367:1 gene:GLYMA15G35860 transcript:GLYMA15G35860.4 | 2 | 1930 | 0.03 | 11 | 2.2 | 2 | 5' TTTGGATTGAAGGGAGCTC 3' ||||| |||||||||||| 3' CCTATAACCTCACTTCCCTCGAGGTTGAAGTG 5' |
733 | Glycine max | TGAAGCTGCCAGCATGATCTT | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA15G09750.3 cdna:novel chromosome:V1.0:Gm15:6969486:6976414:-1 gene:GLYMA15G09750 transcript:GLYMA15G09750.3 | 1 | 3236 | 0.03 | 40 | 10 | 3.5 | 5' TGAAGCTGCCAGCATGATCTT 3' ||||||||||| ||||||o 3' TTTATGTTCGACGGTCGGACTAGAGTGTCCCA 5' |
734 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA06G13960.2 cdna:novel chromosome:V1.0:Gm06:11041407:11044426:1 gene:GLYMA06G13960 transcript:GLYMA06G13960.2 | 2 | 713 | 0 | 40 | 8 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' TTGAAGGTGTCCGAAAGAACTTGCCCCTGCCG 5' |
735 | Glycine max | TGACAGAAGAGAGTGAGCAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA02G30670.2 cdna:novel chromosome:V1.0:Gm02:32711340:32716829:-1 gene:GLYMA02G30670 transcript:GLYMA02G30670.2 | 2 | 961 | 0 | 20 | 20 | 1 | 5' TGACAGAAGAGAGTGAGCAC 3' ||||||||||||| |||||| 3' CTGAACTGTCTTCTCTCTCTCGTGTCAAACTC 5' |
736 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA02G02240.1 cdna:novel chromosome:V1.0:Gm02:1593908:1598929:-1 gene:GLYMA02G02240 transcript:GLYMA02G02240.1 | 0 | 336 | 0.04 | 40 | 20 | 3 | 5' TTCCACAGCTTTCTTGAAC 3' ||||||||||| ||| || 3' GGCTCAGGTGTCGAAAAAACATGCTCAGGCGT 5' |
737 | Glycine max | TGGAGAAGCAGGGCACGTGCA | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA12G26190.1 cdna:novel chromosome:V1.0:Gm12:29514536:29517365:1 gene:GLYMA12G26190 transcript:GLYMA12G26190.1 | 2 | 879 | 0 | 20 | 20 | 2 | 5' TGGAGAAGCAGGGCACGTGCA 3' |||||||o||||o||||||| 3' TACCACCTCTTTGTCCTGTGCACGAGGGAAAC 5' |
738 | Glycine max | TCCAAAGGGATCGCATTGATC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA19G39420.1 cdna:novel chromosome:V1.0:Gm19:46102119:46105994:1 gene:GLYMA19G39420 transcript:GLYMA19G39420.1 | 2 | 1788 | 0 | 33 | 16.5 | 1 | 5' TCCAAAGGGATCGCATTGATC 3' |||||||||||||||||| || 3' CTGTAGGTTTCCCTAGCGTAAC-AGAGGTCGA 5' |
739 | Glycine max | TTAATCAAGGAAATCACGGTCG | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA08G08430.1 cdna:known chromosome:V1.0:Gm08:6040931:6043635:1 gene:GLYMA08G08430 transcript:GLYMA08G08430.1 | 2 | 325 | 0.01 | 20 | 20 | 3.5 | 5' TTAATCAAGGAAATCACGGTCG 3' o||||||||| |||| ||||| 3' ACGTCGTTAGTTCCTGTAGTCCCAGCCTTTGC 5' |
740 | Glycine max | TCGCTTGGTGCAGGTCGGGAA | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA08G08180.3 cdna:known chromosome:V1.0:Gm08:5840900:5843303:1 gene:GLYMA08G08180 transcript:GLYMA08G08180.3 | 2 | 950 | 0.05 | 21 | 7 | 3.5 | 5' TCGCTTGG-TGCAGGTCGGGAA 3' | |||||| |||||oo|o|||| 3' ATCAACGAACCGACGTCTGGTCCTTGCTCTCT 5' |
741 | Glycine max | TGCCTGGCTCCCTGTATGCC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA13G40030.1 cdna:novel chromosome:V1.0:Gm13:40591013:40594198:1 gene:GLYMA13G40030 transcript:GLYMA13G40030.1 | 1 | 1779 | 0 | 40 | 40 | 0 | 5' TGCCTGGCTCCCTGTATGCC 3' |||||||||||||||||||| 3' TCTTACGGACCGAGGGACATACGGACGTCCTC 5' |
742 | Glycine max | TGAAGCTGCCAGCATGATCT | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA19G33690.1 cdna:novel chromosome:V1.0:Gm19:41283582:41298735:-1 gene:GLYMA19G33690 transcript:GLYMA19G33690.1 | 0 | 1081 | 0.04 | 20 | 20 | 3.5 | 5' TGAAGCTGCCAGCATGATCT 3' |||o|||||||||| ||| 3' AGGTCCTTTGACGGTCGTAGGAGAAGGGGGAC 5' |
743 | Glycine max | TTGACAGAAGATAGAGAGCAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA11G02260.1 cdna:novel chromosome:V1.0:Gm11:1409681:1414565:1 gene:GLYMA11G02260 transcript:GLYMA11G02260.1 | 1 | 868 | 0.03 | 20 | 20 | 3.5 | 5' TTGACAGAAGATAGAGAGCAC 3' |||| ||||||o|||||| | 3' CCCGAACT-TCTTCTGTCTCTCTGGCTTCAGG 5' |
744 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA17G05800.1 cdna:novel chromosome:V1.0:Gm17:4086935:4089150:1 gene:GLYMA17G05800 transcript:GLYMA17G05800.1 | 0 | 422 | 0 | 40 | 8 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' TTGAAGGTGTCCGAAAGAACTTGCCAAAAAGG 5' |
745 | Glycine max | TGCCTGGCTCCCTGTATGCC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA19G36571.1 cdna:novel chromosome:V1.0:Gm19:43842474:43846765:-1 gene:GLYMA19G36571 transcript:GLYMA19G36571.1 | 1 | 2324 | 0 | 20 | 20 | 0 | 5' TGCCTGGCTCCCTGTATGCC 3' |||||||||||||||||||| 3' TCGTACGGACCGAGGGACATACGGTCGTCCTC 5' |
746 | Glycine max | TTTGGATTGAAGGGAGCTCT | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA13G25716.1 cdna:novel chromosome:V1.0:Gm13:28928845:28934215:1 gene:GLYMA13G25716 transcript:GLYMA13G25716.1 | 2 | 1340 | 0.04 | 11 | 2.2 | 2.5 | 5' TTTGGATTGAAGGGAGCTCT 3' ||||| ||||||||||||o 3' CCTATAACCTCACTTCCCTCGAGGTTGAAGTA 5' |
747 | Glycine max | TGTGTTCTCAGGTCGCCCCT | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA03G40280.2 cdna:novel chromosome:V1.0:Gm03:46076955:46080391:1 gene:GLYMA03G40280 transcript:GLYMA03G40280.2 | 2 | 156 | 0.03 | 5 | 2.5 | 2.5 | 5' TGTGTTCTCAGGTCGCCCCT 3' |||| ||||||| |o||||| 3' AGTTACACTAGAGTCCCGTGGGGAATCTGTCT 5' |
748 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA09G07990.1 cdna:novel chromosome:V1.0:Gm09:7003261:7005873:-1 gene:GLYMA09G07990 transcript:GLYMA09G07990.1 | 2 | 486 | 0 | 40 | 8 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' TTGAAGGTGTCCGAAAGAACTTGCTAAGAAGG 5' |
749 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA09G17255.1 cdna:novel chromosome:V1.0:Gm09:21116187:21116784:1 gene:GLYMA09G17255 transcript:GLYMA09G17255.1 | 1 | 284 | 0.04 | 3 | 1.5 | 2.5 | 5' TTCCACAGCTTTCTTGAAC 3' o||||||||||||||| | 3' AACCGAGGTGTCGAAAGAACCAGACAAAGAAC 5' |
750 | Glycine max | TATTGGCTAGAGATAAGACAAAGA | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA01G37790.1 cdna:known chromosome:V1.0:Gm01:50071777:50075271:-1 gene:GLYMA01G37790 transcript:GLYMA01G37790.1 | 2 | 119 | 0.01 | 19 | 9.5 | 3.5 | 5' TATTGGC-TAGAGATAAGACAAAGA 3' | |||o| ||||||||||| ||||| 3' GGTACAACTGAATCTCTATTCTCTTTCTCAGC 5' |
751 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA10G07790.2 cdna:novel chromosome:V1.0:Gm10:6583388:6586706:1 gene:GLYMA10G07790 transcript:GLYMA10G07790.2 | 0 | 646 | 0 | 32 | 32 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' AACAAGGTGTCCGAAAGAACTTGCCAAGGCCG 5' |
752 | Glycine max | TGCCTGGCTCCCTGTATGCC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA09G28360.2 cdna:novel chromosome:V1.0:Gm09:35348339:35353261:1 gene:GLYMA09G28360 transcript:GLYMA09G28360.2 | 2 | 2521 | 0 | 40 | 10 | 0.5 | 5' TGCCTGGCTCCCTGTATGCC 3' ||||||||||||o||||||| 3' TCGTACGGACCGAGGGGCATACGGACGTCTGG 5' |
753 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA08G04800.1 cdna:known chromosome:V1.0:Gm08:3411980:3414173:-1 gene:GLYMA08G04800 transcript:GLYMA08G04800.1 | 1 | 692 | 0.05 | 20 | 10 | 3 | 5' TTCCACAGCTTTCTTGAAC 3' ||| |||||| ||||||| 3' TACCAAGTTGTCGACAGAACTTCTCTTCCTGT 5' |
754 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA11G11826.1 cdna:novel chromosome:V1.0:Gm11:8435940:8440047:1 gene:GLYMA11G11826 transcript:GLYMA11G11826.1 | 0 | 615 | 0 | 40 | 8 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' ACTAAGGTGTCCGAAAGAACTTGCCAACGCCG 5' |
755 | Glycine max | TGGAGAAGCAGGGCACGTGCA | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA13G34950.1 cdna:novel chromosome:V1.0:Gm13:36439653:36442281:1 gene:GLYMA13G34950 transcript:GLYMA13G34950.1 | 2 | 1066 | 0 | 7 | 3.5 | 2 | 5' TGGAGAAGCAGGGCACGTGCA 3' |||||||o||||o||||||| 3' TAACACCTCTTTGTCCTGTGCACGAGGAAAAA 5' |
756 | Glycine max | AGGGATAGGTAAAACAATGAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA02G08415.1 cdna:novel chromosome:V1.0:Gm02:6599275:6600860:1 gene:GLYMA02G08415 transcript:GLYMA02G08415.1 | 2 | 96 | 0 | 8 | 8 | 2.5 | 5' AGGGATAGGTAAAACAATGAC 3' ||o|||||||||||||oo|| 3' AACCACCTTATCCATTTTGTTGTTGATTGATA 5' |
757 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA03G22874.1 cdna:novel chromosome:V1.0:Gm03:29537652:29541762:1 gene:GLYMA03G22874 transcript:GLYMA03G22874.1 | 0 | 492 | 0.01 | 40 | 5.71429 | 2 | 5' TTCCACAGCTTTCTTGAAC 3' |||||| |||||||||| | 3' CAAGAAGGTGACGAAAGAACTAGGTGAATTAT 5' |
758 | Glycine max | TCGGACCAGGCTTCATTCC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA08G13110.1 cdna:novel chromosome:V1.0:Gm08:9562597:9569062:1 gene:GLYMA08G13110 transcript:GLYMA08G13110.1 | 2 | 1092 | 0 | 40 | 8 | 1 | 5' TCGGACCAGGCTTCATTCC 3' o|||||||||||||||o|| 3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAAAC 5' |
759 | Glycine max | TCGGACCAGGCTTCATTCCC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA08G13110.1 cdna:novel chromosome:V1.0:Gm08:9562597:9569062:1 gene:GLYMA08G13110 transcript:GLYMA08G13110.1 | 2 | 1092 | 0 | 40 | 8 | 1.5 | 5' TCGGACCAGGCTTCATTCCC 3' o||||||||||||||| ||| 3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAAA 5' |
760 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA13G21625.1 cdna:novel chromosome:V1.0:Gm13:25212900:25216570:1 gene:GLYMA13G21625 transcript:GLYMA13G21625.1 | 0 | 604 | 0 | 40 | 40 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' AACAAGGTGTCCGAAAGAACTTGCCAAAGCCG 5' |
761 | Glycine max | CAGTGCATGACTATATCGCCAG | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA19G28780.1 cdna:novel chromosome:V1.0:Gm19:36366963:36371834:-1 gene:GLYMA19G28780 transcript:GLYMA19G28780.1 | 0 | 555 | 0 | 18 | 9 | 3.5 | 5' CAGTGCATGACTATATCGCCAG 3' ||||||| |||o|| | ||||| 3' CGAGGTCACGT-CTGGTAGAACGGTCTACGTT 5' |
762 | Glycine max | TGAAGCTGCCAGCATGATCTA | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA08G00420.2 cdna:known chromosome:V1.0:Gm08:140729:147970:-1 gene:GLYMA08G00420 transcript:GLYMA08G00420.2 | 1 | 549 | 0.01 | 20 | 20 | 3.5 | 5' TGAAGCTGCCAGCATGATCTA 3' ||| | ||||||||||| |o| 3' TCTAACTCCTACGGTCGTACTTGGTACTGGCC 5' |
763 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA07G04290.1 cdna:novel chromosome:V1.0:Gm07:3149413:3151946:-1 gene:GLYMA07G04290 transcript:GLYMA07G04290.1 | 2 | 728 | 0 | 40 | 8 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' TTGAAGGTGTCCGAAAGAACTTGCCAAAGACG 5' |
764 | Glycine max | TTTGGATTGAAGGGAGCTC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA04G15150.3 cdna:novel chromosome:V1.0:Gm04:15669460:15674719:1 gene:GLYMA04G15150 transcript:GLYMA04G15150.3 | 2 | 1355 | 0.01 | 6 | 1.5 | 1 | 5' TTTGGATTGAAGGGAGCTC 3' |||||| |||||||||||| 3' CCTTAAACCTCACTTCCCTCGAGACTGAAACG 5' |
765 | Glycine max | CAGCCAAGGATGACTTGCCG | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA14G01360.1 cdna:novel chromosome:V1.0:Gm14:766608:770587:1 gene:GLYMA14G01360 transcript:GLYMA14G01360.1 | 2 | 1555 | 0 | 11 | 5.5 | 1.5 | 5' CAGCCAAGGATGACTTGCCG 3' ||||||||o|||| |||||| 3' TTGTGTCGGTTCTTACTAAACGGCGAACTGTA 5' |
766 | Glycine max | TCGGACCAGGCTTCATTCCCC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA05G30080.4 cdna:novel chromosome:V1.0:Gm05:35506087:35526765:1 gene:GLYMA05G30080 transcript:GLYMA05G30080.4 | 1 | 6240 | 0.03 | 20 | 10 | 4 | 5' TCGGACCAGGCTTCATTCCCC 3' ||o||||||| o|||||| | 3' GCTCAGTCTGGTCCCTGGTAAGGTGAGGTGAA 5' |
767 | Glycine max | TGGAGAAGCAGGGCACGTGCA | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA15G40510.1 cdna:known chromosome:V1.0:Gm15:47503232:47508060:-1 gene:GLYMA15G40510 transcript:GLYMA15G40510.1 | 1 | 734 | 0 | 12 | 6 | 2 | 5' TGGAGAAGCAGGGCACGTGCA 3' |||||||||||||||| ||| 3' TTTTACCTCTTCGTCCCGTGAACGAGTTTGAG 5' |
768 | Glycine max | TGAAGCTGCCAGCATGATCT | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA15G00770.2 cdna:novel chromosome:V1.0:Gm15:462686:466246:-1 gene:GLYMA15G00770 transcript:GLYMA15G00770.2 | 1 | 1634 | 0 | 40 | 40 | 2 | 5' TGAAGCTGCCAGCATGATCT 3' ||||||||||||| || ||| 3' GTAGACTTCGACGGTCG-ACAAGATGGCAGGA 5' |
769 | Glycine max | AAGCCAAGGATGACTTGCCGA | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA03G36140.6 cdna:known chromosome:V1.0:Gm03:43160314:43165126:-1 gene:GLYMA03G36140 transcript:GLYMA03G36140.6 | 2 | 1420 | 0.04 | 2 | 0.666667 | 3 | 5' AAGCCAAGGATGACTTGCCGA 3' ||||||||||||| ||||| 3' GTAGTTCGGTTCCTACTCAACGGAAGTCAATG 5' |
770 | Glycine max | TGAAGCTGCCAGCATGATCT | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA18G07890.2 cdna:novel chromosome:V1.0:Gm18:6636288:6639893:1 gene:GLYMA18G07890 transcript:GLYMA18G07890.2 | 0 | 716 | 0.04 | 40 | 20 | 4 | 5' TGAAGCTGCCAGCATGATCT 3' | ||||||||| |||| o|o 3' TGGTA-TTCGACGGTAGTACGGGGGTATTATG 5' |
771 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA15G19460.1 cdna:novel chromosome:V1.0:Gm15:16759912:16762499:-1 gene:GLYMA15G19460 transcript:GLYMA15G19460.1 | 0 | 450 | 0 | 28 | 28 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' TTGAAGGTGTCCGAAAGAACTTGCTAAGAAGG 5' |
772 | Glycine max | TTGACAGAAGATAGAGAGCAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA03G29901.1 cdna:novel chromosome:V1.0:Gm03:37904151:37914523:-1 gene:GLYMA03G29901 transcript:GLYMA03G29901.1 | 1 | 1149 | 0 | 40 | 20 | 1 | 5' TTGACAGAAGATAGAGAGCAC 3' ||||||||||| ||||||||| 3' ACTAAACTGTCTTCTCTCTCTCGTGTCGAGCT 5' |
773 | Glycine max | TTGGACTGAAGGGAGCTCCT | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA13G29160.1 cdna:novel chromosome:V1.0:Gm13:32078442:32088927:-1 gene:GLYMA13G29160 transcript:GLYMA13G29160.1 | 2 | 2296 | 0.03 | 14 | 7 | 2.5 | 5' TTGGACTGAAGGGAGCTCCT 3' ||||||||||||| |o||| 3' TCTTAACCTGACTTCCCAGGGGGATAACAACA 5' |
774 | Glycine max | TTGGACTGAAGGGAGCTCCCT | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA13G29160.1 cdna:novel chromosome:V1.0:Gm13:32078442:32088927:-1 gene:GLYMA13G29160 transcript:GLYMA13G29160.1 | 2 | 2296 | 0.04 | 14 | 7 | 3 | 5' TTGGACTGAAGGGAGCTCCCT 3' ||||||||||||| | |||| 3' TCTTAACCTGACTTCCCAGG-GGGATAACAAC 5' |
775 | Glycine max | CAGAGGAAGCAGCACTTGTACC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA11G09980.1 cdna:known chromosome:V1.0:Gm11:7137966:7142199:1 gene:GLYMA11G09980 transcript:GLYMA11G09980.1 | 1 | 30 | 0.02 | 20 | 20 | 4 | 5' CAGAGGAAGCAGCACTTG-TACC 3' |||||| ||||| ||| | |||| 3' CAGCGTCTCCCTCGTCATGATCGATGGAGAAG 5' |
776 | Glycine max | CAGAGGAAGCAGCACTTGTACC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA10G10154.1 cdna:novel chromosome:V1.0:Gm10:9750456:9776568:-1 gene:GLYMA10G10154 transcript:GLYMA10G10154.1 | 2 | 5918 | 0.03 | 20 | 10 | 3.5 | 5' CAGAGGAAGCAGCACTTGTACC 3' ||||o|| |||||| ||| ||| 3' CCTTGTCTTCTACGTCGTCAACTTGGTAACAA 5' |
777 | Glycine max | TAACAAGTGGGTTTGTTGACTG | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA05G30140.1 cdna:known chromosome:V1.0:Gm05:35569728:35575763:-1 gene:GLYMA05G30140 transcript:GLYMA05G30140.1 | 2 | 1489 | 0.02 | 20 | 20 | 3 | 5' TAACAAGTGGGTTTGTTGACTG 3' o | |||||||||o|||||||| 3' AACAGGT-TTCACCCAAGCAACTGACCAAGTA 5' |
778 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA12G01730.2 cdna:novel chromosome:V1.0:Gm12:1061212:1065353:1 gene:GLYMA12G01730 transcript:GLYMA12G01730.2 | 0 | 576 | 0 | 40 | 8 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' ACTAAGGTGTCCGAAAGAACTTGCCAACGCCG 5' |
779 | Glycine max | TGAAGCTGCCAGCATGATCTA | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA18G05330.1 cdna:novel chromosome:V1.0:Gm18:4066963:4074557:1 gene:GLYMA18G05330 transcript:GLYMA18G05330.1 | 2 | 2926 | 0.05 | 20 | 20 | 3 | 5' TGAAGCTGCCAGCATGATCTA 3' ||||||||||| ||||||| 3' CTTGTGTTCGACGGTCGGACTAGATTCTCCCA 5' |
780 | Glycine max | CAAACCTCCGTAGCCTGTATC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA15G06570.1 cdna:novel chromosome:V1.0:Gm15:4643944:4647571:-1 gene:GLYMA15G06570 transcript:GLYMA15G06570.1 | 2 | 2645 | 0.01 | 20 | 20 | 3 | 5' CAAACCTCCGTAGCCTGTATC 3' |||| |||||o|o||| |||| 3' CATAGTTTTGAGGCGTTGGA-ATAGTGTCAGG 5' |
781 | Glycine max | TTGACAGAAGATAGAGAGCAC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA19G02020.1 cdna:novel chromosome:V1.0:Gm19:1729371:1736065:-1 gene:GLYMA19G02020 transcript:GLYMA19G02020.1 | 1 | 1019 | 0 | 20 | 20 | 2.5 | 5' TTGACAGAAGATAGAGAGCAC 3' |||| ||||| ||||o||||| 3' TTCGAACTATCTTCCATCTTTCGTGTGTGGAA 5' |
782 | Glycine max | CAATTGGATCGGTCCAACCGGC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA13G25480.1 cdna:novel chromosome:V1.0:Gm13:28726715:28731381:1 gene:GLYMA13G25480 transcript:GLYMA13G25480.1 | 2 | 799 | 0.01 | 20 | 20 | 3.5 | 5' CAATTGGATCGGTCCAACCGGC 3' |||o||||o|o|o||| ||o|| 3' CCTAGTTGACCTGGTCGGGTCGGTCGTGGTGG 5' |
783 | Glycine max | TCTCATTCCATACATCGTCTG | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA04G29220.3 cdna:novel chromosome:V1.0:Gm04:33301245:33307654:-1 gene:GLYMA04G29220 transcript:GLYMA04G29220.3 | 2 | 1108 | 0 | 4 | 1.33333 | 2.5 | 5' TCTCATTCCATACATCGTCTG 3' o|||||||||o|||||o||oo 3' GCTAGGAGTAAGGTGTGTAGTAGGTCGTGTTC 5' |
784 | Glycine max | TCGGACCAGGCTTCATTCCCC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA16G17090.5 cdna:novel chromosome:V1.0:Gm16:18358481:18361869:1 gene:GLYMA16G17090 transcript:GLYMA16G17090.5 | 1 | 1059 | 0.04 | 20 | 5 | 4 | 5' TCGGACCAGGCTTCATTCCCC 3' || |||| |||||| |||| | 3' GGGAAGACTGG-CCGAAGGAAGGAGGCGTATG 5' |
785 | Glycine max | TGGAGAAGCAGGGCACGTGCA | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA17G10970.1 cdna:known chromosome:V1.0:Gm17:8247753:8249783:1 gene:GLYMA17G10970 transcript:GLYMA17G10970.1 | 2 | 918 | 0.01 | 37 | 7.4 | 2.5 | 5' TGGAGAAGCAGGGCACGTGCA 3' ||||||||||||||||||o 3' CCTAACCTCTTCGTCCCGTGCATTCGGCATAG 5' |
786 | Glycine max | TCAAAGGGAGTTGTAGGGGAA | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA13G09530.2 cdna:novel chromosome:V1.0:Gm13:10957230:10963280:-1 gene:GLYMA13G09530 transcript:GLYMA13G09530.2 | 1 | 369 | 0.02 | 40 | 20 | 3.5 | 5' TCAAAGGGAGTTGTAGGGGAA 3' |||||||||||| ||o||| 3' ATGCCGTTTCCCTCAACTTCTCCTAGAAGTTT 5' |
787 | Glycine max | TGAAGCTGCCAGCATGATCTT | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA01G43960.4 cdna:novel chromosome:V1.0:Gm01:54800646:54805855:-1 gene:GLYMA01G43960 transcript:GLYMA01G43960.4 | 2 | 2819 | 0.05 | 20 | 4 | 3 | 5' TGAAGCTGCCAGCATGATCTT 3' |o|||||o|||||| || ||| 3' CGGTATTTCGATGGTCGTTCTCGAAAGTCTAG 5' |
788 | Glycine max | TGGAGAAGCAGGGCACGTGCA | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA12G35530.1 cdna:novel chromosome:V1.0:Gm12:38654911:38657537:-1 gene:GLYMA12G35530 transcript:GLYMA12G35530.1 | 2 | 995 | 0 | 7 | 3.5 | 2 | 5' TGGAGAAGCAGGGCACGTGCA 3' |||||||o||||o||||||| 3' TAACACCTCTTTGTCCTGTGCACGAGGAAAAA 5' |
789 | Glycine max | TCGGACCAGGCTTCATTCC | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA05G21726.1 cdna:novel chromosome:V1.0:Gm05:26595908:26602630:1 gene:GLYMA05G21726 transcript:GLYMA05G21726.1 | 2 | 193 | 0 | 40 | 4 | 0.5 | 5' TCGGACCAGGCTTCATTCC 3' o|||||||||||||||||| 3' CTTAGGCCTGGTCCGAAGTAAGGTACGTAAAC 5' |
790 | Glycine max | TGAAGCTGCCAGCATGATCT | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA06G18070.2 cdna:novel chromosome:V1.0:Gm06:14387066:14392468:1 gene:GLYMA06G18070 transcript:GLYMA06G18070.2 | 2 | 1036 | 0.05 | 20 | 20 | 2.5 | 5' TGAAGCTGCCAGCATGATCT 3' ||||o||o|||||||o||| 3' TGTAACTTTGATGGTCGTATTAGTGGTGGTGT 5' |
791 | Glycine max | ATATAGCATCGTGAGCAATCA | alignment | plot | GSM848964_SC25_unique_seq_count | GLYMA13G23520.3 cdna:novel chromosome:V1.0:Gm13:26916462:26919844:-1 gene:GLYMA13G23520 transcript:GLYMA13G23520.3 | 1 | 298 | 0.01 | 20 | 6.66667 | 4 | 5' ATATAGCATCGTGAGCAATCA 3' |||o|||||| o|o|||o|| 3' AAAGTATGTCGTAGGTTTTGTTGGTGGGTATG 5' |
792 | Glycine max | TGCCTGGCTCCCTGTATGCC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA13G02410.1 cdna:novel chromosome:V1.0:Gm13:2276691:2281351:-1 gene:GLYMA13G02410 transcript:GLYMA13G02410.1 | 0 | 1530 | 0 | 144 | 144 | 0.5 | 5' TGCCTGGCTCCCTGTATGCC 3' ||||||||||||||o||||| 3' TAGTACGGACCGAGGGACGTACGGTCGTCCTT 5' |
793 | Glycine max | TGACAGAAGAGAGTGAGCAC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA02G43950.1 cdna:novel chromosome:V1.0:Gm02:48631576:48640556:1 gene:GLYMA02G43950 transcript:GLYMA02G43950.1 | 0 | 719 | 0.04 | 18 | 18 | 4 | 5' TGACAGAAGAGAGTGAGCAC 3' |o||||||||||||o| | 3' CGTTATTGTCTTCTCTCATTATTTCTGACAAA 5' |
794 | Glycine max | TGACAGAAGAGAGTGAGCACA | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA02G43950.1 cdna:novel chromosome:V1.0:Gm02:48631576:48640556:1 gene:GLYMA02G43950 transcript:GLYMA02G43950.1 | 0 | 719 | 0.01 | 18 | 18 | 4 | 5' TGACAGAAGAGAGTGAGCACA 3' |o||||||||||||o| | | 3' CGTTATTGTCTTCTCTCATTATT-TCTGACAA 5' |
795 | Glycine max | TCGGACCAGGCTTCATTCC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA11G20520.1 cdna:novel chromosome:V1.0:Gm11:17333852:17340583:-1 gene:GLYMA11G20520 transcript:GLYMA11G20520.1 | 0 | 1302 | 0 | 348 | 174 | 1 | 5' TCGGACCAGGCTTCATTCC 3' o|||||||||||||||o|| 3' CTTAGGCCTGGTCCGAAGTAGGGTCCGTAGAC 5' |
796 | Glycine max | TCGGACCAGGCTTCATTCCC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA11G20520.1 cdna:novel chromosome:V1.0:Gm11:17333852:17340583:-1 gene:GLYMA11G20520 transcript:GLYMA11G20520.1 | 0 | 1302 | 0 | 348 | 174 | 1.5 | 5' TCGGACCAGGCTTCATTCCC 3' o||||||||||||||| ||| 3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAGA 5' |
797 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA01G34650.3 cdna:novel chromosome:V1.0:Gm01:47082620:47085604:1 gene:GLYMA01G34650 transcript:GLYMA01G34650.3 | 0 | 397 | 0 | 61 | 20.3333 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' ACAAAGGTGTCCGAAAGAACTTGCTAAAGCTG 5' |
798 | Glycine max | TCCAAAGGGATCGCATTGATC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA03G36770.1 cdna:novel chromosome:V1.0:Gm03:43630257:43634178:1 gene:GLYMA03G36770 transcript:GLYMA03G36770.1 | 2 | 1806 | 0 | 10 | 5 | 1 | 5' TCCAAAGGGATCGCATTGATC 3' |||||||||||||||||| || 3' CTGTAGGTTTCCCTAGCGTAAC-AGAGGTCGA 5' |
799 | Glycine max | TTGACAGAAGATAGAGAGCAC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA02G13371.1 cdna:novel chromosome:V1.0:Gm02:11670695:11677275:-1 gene:GLYMA02G13371 transcript:GLYMA02G13371.1 | 0 | 1261 | 0 | 55 | 11 | 1.5 | 5' TTGACAGAAGATAGAGAGCAC 3' o|||||||||| ||||||||| 3' ACTAGACTGTCTTCTCTCTCTCGTGTCGAACT 5' |
800 | Glycine max | TGAGACCAAATGAGCAGCTGA | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA11G37820.1 cdna:novel chromosome:V1.0:Gm11:38824883:38827744:-1 gene:GLYMA11G37820 transcript:GLYMA11G37820.1 | 2 | 1675 | 0 | 3 | 3 | 3 | 5' TGAGACCA-AATGAGCAGCTGA 3' |o|o|||| ||||||||||| | 3' TCAATTTTGGTGTTACTCGTCGAGTTCGACGT 5' |
801 | Glycine max | TGACAGAAGAGAGTGAGCAC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA02G13371.1 cdna:novel chromosome:V1.0:Gm02:11670695:11677275:-1 gene:GLYMA02G13371 transcript:GLYMA02G13371.1 | 2 | 1260 | 0 | 7 | 1.4 | 1 | 5' TGACAGAAGAGAGTGAGCAC 3' ||||||||||||| |||||| 3' CTAGACTGTCTTCTCTCTCTCGTGTCGAACTA 5' |
802 | Glycine max | TTGACAGAAGATAGAGAGCAC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA02G30670.2 cdna:novel chromosome:V1.0:Gm02:32711340:32716829:-1 gene:GLYMA02G30670 transcript:GLYMA02G30670.2 | 0 | 962 | 0 | 68 | 68 | 1 | 5' TTGACAGAAGATAGAGAGCAC 3' ||||||||||| ||||||||| 3' ACTGAACTGTCTTCTCTCTCTCGTGTCAAACT 5' |
803 | Glycine max | TGAAGCTGCCAGCATGATCT | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA05G27580.1 cdna:novel chromosome:V1.0:Gm05:33489312:33494876:-1 gene:GLYMA05G27580 transcript:GLYMA05G27580.1 | 2 | 2318 | 0.03 | 160 | 32 | 3 | 5' TGAAGCTGCCAGCATGATCT 3' ||||||||||| |||||| 3' CTTATGTTCGACGGTCGGACTAGAGTGTCCCA 5' |
804 | Glycine max | TTTGGATTGAAGGGAGCTC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA12G35701.1 cdna:novel chromosome:V1.0:Gm12:38824454:38828331:-1 gene:GLYMA12G35701 transcript:GLYMA12G35701.1 | 2 | 1305 | 0 | 20 | 5 | 2 | 5' TTTGGATTGAAGGGAGCTC 3' ||||| |||||||| |||| 3' AACAAAACCAAACTTCCCCCGAGATAACACTT 5' |
805 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA14G10090.1 cdna:novel chromosome:V1.0:Gm14:8190765:8195025:-1 gene:GLYMA14G10090 transcript:GLYMA14G10090.1 | 2 | 1104 | 0 | 51 | 17 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' CGGAAGGTGTCCGAAAGAACTTGCTACCGCAG 5' |
806 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA06G13960.2 cdna:novel chromosome:V1.0:Gm06:11041407:11044426:1 gene:GLYMA06G13960 transcript:GLYMA06G13960.2 | 2 | 713 | 0 | 93 | 18.6 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' TTGAAGGTGTCCGAAAGAACTTGCCCCTGCCG 5' |
807 | Glycine max | TGACAGAAGAGAGTGAGCAC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA02G30670.2 cdna:novel chromosome:V1.0:Gm02:32711340:32716829:-1 gene:GLYMA02G30670 transcript:GLYMA02G30670.2 | 2 | 961 | 0 | 9 | 9 | 1 | 5' TGACAGAAGAGAGTGAGCAC 3' ||||||||||||| |||||| 3' CTGAACTGTCTTCTCTCTCTCGTGTCAAACTC 5' |
808 | Glycine max | TGAAGCTGCCAGCATGATCTGA | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA15G09750.3 cdna:novel chromosome:V1.0:Gm15:6969486:6976414:-1 gene:GLYMA15G09750 transcript:GLYMA15G09750.3 | 2 | 3236 | 0.03 | 33 | 8.25 | 4 | 5' TGAAGCTGCCAGCATGATCTGA 3' ||||||||||| |||||| | 3' TTTATGTTCGACGGTCGGACTAGAGTGTCCCA 5' |
809 | Glycine max | TCCAAAGGGATCGCATTGATC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA19G39420.1 cdna:novel chromosome:V1.0:Gm19:46102119:46105994:1 gene:GLYMA19G39420 transcript:GLYMA19G39420.1 | 2 | 1788 | 0 | 10 | 5 | 1 | 5' TCCAAAGGGATCGCATTGATC 3' |||||||||||||||||| || 3' CTGTAGGTTTCCCTAGCGTAAC-AGAGGTCGA 5' |
810 | Glycine max | TTCCACAGCTTTCTTGAACTG | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA02G02942.2 cdna:novel chromosome:V1.0:Gm02:2254118:2257679:1 gene:GLYMA02G02942 transcript:GLYMA02G02942.2 | 2 | 549 | 0.02 | 2 | 1 | 3 | 5' TTCCACA-GCTTTCTTGAACTG 3' o||| || ||||||o||||||| 3' AACGAGGCGTCCGAAAGGACTTGACAAAAGAG 5' |
811 | Glycine max | TCATCATCATCATCTTCTTCT | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA03G32020.3 cdna:novel chromosome:V1.0:Gm03:39830110:39837209:-1 gene:GLYMA03G32020 transcript:GLYMA03G32020.3 | 2 | 827 | 0.04 | 264 | 264 | 2 | 5' TCATCATCATCATCTTCTTCT 3' || ||||||||||| |||||| 3' GAGAAGGAGTAGTAGTAGTAGAAGAAGAACGA 5' |
812 | Glycine max | TCATCATCATCATCTTCTTCT | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA03G32020.3 cdna:novel chromosome:V1.0:Gm03:39830110:39837209:-1 gene:GLYMA03G32020 transcript:GLYMA03G32020.3 | 2 | 824 | 0 | 46 | 46 | 0 | 5' TCATCATCATCATCTTCTTCT 3' ||||||||||||||||||||| 3' AAGGAGTAGTAGTAGTAGAAGAAGAACGACAC 5' |
813 | Glycine max | CTTTGTATTCTTCCACAGCTT | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA19G29180.3 cdna:novel chromosome:V1.0:Gm19:36747960:36752977:-1 gene:GLYMA19G29180 transcript:GLYMA19G29180.3 | 2 | 526 | 0.02 | 29 | 5.8 | 3 | 5' CTTTGTATTCTTCCACAGCTT 3' |o|||||||| || |||||o| 3' CGGAGGAACATAAGTAGTTGTCGGAACACTCT 5' |
814 | Glycine max | TGAAGCTGCCAGCATGATCTT | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA02G40650.1 cdna:novel chromosome:V1.0:Gm02:45888235:45899367:-1 gene:GLYMA02G40650 transcript:GLYMA02G40650.1 | 0 | 2942 | 0.05 | 72 | 18 | 4 | 5' TGAAGCTGCCAGCATGATCTT 3' ||||||||||| |||||| 3' CTTATGTTCGACGGTCGGACTAGATTCTCCCA 5' |
815 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA04G40880.4 cdna:novel chromosome:V1.0:Gm04:46789378:46792991:-1 gene:GLYMA04G40880 transcript:GLYMA04G40880.4 | 2 | 1141 | 0 | 93 | 18.6 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' TTGAAGGTGTCCGAAAGAACTTGCCCCTGCCG 5' |
816 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA09G07990.1 cdna:novel chromosome:V1.0:Gm09:7003261:7005873:-1 gene:GLYMA09G07990 transcript:GLYMA09G07990.1 | 0 | 486 | 0 | 120 | 24 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' TTGAAGGTGTCCGAAAGAACTTGCTAAGAAGG 5' |
817 | Glycine max | TGACAGAAGAGAGTGAGCAC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA0005S50.1 cdna:novel chromosome:V1.0:Gm05:16185:21667:1 gene:GLYMA0005S50 transcript:GLYMA0005S50.1 | 2 | 1911 | 0 | 5 | 1.25 | 1 | 5' TGACAGAAGAGAGTGAGCAC 3' ||||||||||||| |||||| 3' CTCTACTGTCTTCTCTCTCTCGTGTTGTTCTC 5' |
818 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA16G00971.3 cdna:novel chromosome:V1.0:Gm16:636293:639481:-1 gene:GLYMA16G00971 transcript:GLYMA16G00971.3 | 2 | 955 | 0 | 74 | 14.8 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' TTGAAGGTGTCCGAAAGAACTTGCCAAAGACG 5' |
819 | Glycine max | TTGACAGAAGATAGAGAGCAC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA11G36980.3 cdna:known chromosome:V1.0:Gm11:38244535:38250746:1 gene:GLYMA11G36980 transcript:GLYMA11G36980.3 | 0 | 3527 | 0 | 45 | 11.25 | 1 | 5' TTGACAGAAGATAGAGAGCAC 3' ||||||||||| ||||||||| 3' AAGCAACTGTCTTCTCTCTCTCGTGCCAATTG 5' |
820 | Glycine max | TTTGGATTGAAGGGAGCTC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA06G47000.2 cdna:novel chromosome:V1.0:Gm06:49543622:49548924:-1 gene:GLYMA06G47000 transcript:GLYMA06G47000.2 | 2 | 1343 | 0 | 5 | 1.25 | 1 | 5' TTTGGATTGAAGGGAGCTC 3' |||||| |||||||||||| 3' CCTTAAACCTCACTTCCCTCGAGACTGAAGTG 5' |
821 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA13G16924.1 cdna:novel chromosome:V1.0:Gm13:20777152:20779829:-1 gene:GLYMA13G16924 transcript:GLYMA13G16924.1 | 0 | 769 | 0 | 120 | 24 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' TTGAAGGTGTCCGAAAGAACTTGCTAAAAAGG 5' |
822 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA03G35010.3 cdna:novel chromosome:V1.0:Gm03:42329293:42333139:1 gene:GLYMA03G35010 transcript:GLYMA03G35010.3 | 2 | 1191 | 0 | 14 | 3.5 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' ATCAAGGTGTCCGAAAGAACTTGCCAAAGAAG 5' |
823 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA17G05800.1 cdna:novel chromosome:V1.0:Gm17:4086935:4089150:1 gene:GLYMA17G05800 transcript:GLYMA17G05800.1 | 0 | 422 | 0 | 120 | 24 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' TTGAAGGTGTCCGAAAGAACTTGCCAAAAAGG 5' |
824 | Glycine max | TGCCTGGCTCCCTGTATGCC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA11G20490.1 cdna:novel chromosome:V1.0:Gm11:17300321:17304135:1 gene:GLYMA11G20490 transcript:GLYMA11G20490.1 | 0 | 1552 | 0 | 1003 | 250.75 | 1 | 5' TGCCTGGCTCCCTGTATGCC 3' ||||||||||||||||| || 3' TCGTACGGACCGAGGGACATAGGGACGTCCTC 5' |
825 | Glycine max | TGTGTTCTCAGGTCGCCCCT | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA03G40280.2 cdna:novel chromosome:V1.0:Gm03:46076955:46080391:1 gene:GLYMA03G40280 transcript:GLYMA03G40280.2 | 2 | 156 | 0.01 | 5 | 2.5 | 2.5 | 5' TGTGTTCTCAGGTCGCCCCT 3' |||| ||||||| |o||||| 3' AGTTACACTAGAGTCCCGTGGGGAATCTGTCT 5' |
826 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA19G37740.1 cdna:novel chromosome:V1.0:Gm19:44838730:44842363:1 gene:GLYMA19G37740 transcript:GLYMA19G37740.1 | 2 | 943 | 0 | 14 | 3.5 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' ATCAAGGTGTCCGAAAGAACTTGCCAAAGAAG 5' |
827 | Glycine max | TGCCTGGCTCCCTGTATGCC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA09G28360.2 cdna:novel chromosome:V1.0:Gm09:35348339:35353261:1 gene:GLYMA09G28360 transcript:GLYMA09G28360.2 | 1 | 2521 | 0 | 1003 | 250.75 | 0.5 | 5' TGCCTGGCTCCCTGTATGCC 3' ||||||||||||o||||||| 3' TCGTACGGACCGAGGGGCATACGGACGTCTGG 5' |
828 | Glycine max | TGGAGAAGCAGGGCACGTGCA | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA05G00930.2 cdna:novel chromosome:V1.0:Gm05:542676:544662:-1 gene:GLYMA05G00930 transcript:GLYMA05G00930.2 | 2 | 889 | 0 | 10 | 2 | 2.5 | 5' TGGAGAAGCAGGGCACGTGCA 3' ||||||||||||||||||o 3' CCTAACCTCTTCGTCCCGTGCATTCGGCTTAG 5' |
829 | Glycine max | TTGAGCCGTGCCAATATCA | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA03G03760.1 cdna:novel chromosome:V1.0:Gm03:3581308:3584468:-1 gene:GLYMA03G03760 transcript:GLYMA03G03760.1 | 0 | 1729 | 0 | 399 | 133 | 1.5 | 5' TTGAGCCGTGCCAATATCA 3' ||||||||o||||||||| 3' CACTAACTCGGCGCGGTTATAGGGAACGCGTA 5' |
830 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA10G07790.2 cdna:novel chromosome:V1.0:Gm10:6583388:6586706:1 gene:GLYMA10G07790 transcript:GLYMA10G07790.2 | 0 | 646 | 0 | 15 | 15 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' AACAAGGTGTCCGAAAGAACTTGCCAAGGCCG 5' |
831 | Glycine max | GGAATCTTGATGATGCTGCAG | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA11G00920.2 cdna:novel chromosome:V1.0:Gm11:478506:483371:-1 gene:GLYMA11G00920 transcript:GLYMA11G00920.2 | 2 | 2132 | 0.04 | 2 | 2 | 3.5 | 5' GGAATCTTGATGATGCTGCAG 3' o|||||| |||||| || ||| 3' ATCGTCTTAGACCTACTAAGA-GTCATAAGAC 5' |
832 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA11G11826.1 cdna:novel chromosome:V1.0:Gm11:8435940:8440047:1 gene:GLYMA11G11826 transcript:GLYMA11G11826.1 | 0 | 615 | 0 | 131 | 26.2 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' ACTAAGGTGTCCGAAAGAACTTGCCAACGCCG 5' |
833 | Glycine max | TTTGGATTGAAGGGAGCTC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA04G15150.3 cdna:novel chromosome:V1.0:Gm04:15669460:15674719:1 gene:GLYMA04G15150 transcript:GLYMA04G15150.3 | 0 | 1355 | 0 | 5 | 1.25 | 1 | 5' TTTGGATTGAAGGGAGCTC 3' |||||| |||||||||||| 3' CCTTAAACCTCACTTCCCTCGAGACTGAAACG 5' |
834 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA14G10100.2 cdna:novel chromosome:V1.0:Gm14:8199978:8204920:-1 gene:GLYMA14G10100 transcript:GLYMA14G10100.2 | 2 | 1147 | 0 | 40 | 13.3333 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' CGGAAGGTGTCCGAAAGAACTTGCTACCGCAG 5' |
835 | Glycine max | TGCCTGGCTCCCTGTATGCC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA10G35481.1 cdna:novel chromosome:V1.0:Gm10:43704337:43707929:1 gene:GLYMA10G35481 transcript:GLYMA10G35481.1 | 0 | 1609 | 0 | 1003 | 250.75 | 0 | 5' TGCCTGGCTCCCTGTATGCC 3' |||||||||||||||||||| 3' TCGTACGGACCGAGGGACATACGGAGGTCTTG 5' |
836 | Glycine max | TCGGACCAGGCTTCATTCC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA05G30000.1 cdna:novel chromosome:V1.0:Gm05:35421769:35428492:1 gene:GLYMA05G30000 transcript:GLYMA05G30000.1 | 2 | 1080 | 0 | 42 | 8.4 | 1 | 5' TCGGACCAGGCTTCATTCC 3' o|||||||||||||||o|| 3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAGAC 5' |
837 | Glycine max | TCGGACCAGGCTTCATTCCC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA05G30000.1 cdna:novel chromosome:V1.0:Gm05:35421769:35428492:1 gene:GLYMA05G30000 transcript:GLYMA05G30000.1 | 2 | 1080 | 0 | 42 | 8.4 | 1.5 | 5' TCGGACCAGGCTTCATTCCC 3' o||||||||||||||| ||| 3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5' |
838 | Glycine max | AGGGATAGGTAAAACAATGAC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA16G27510.1 cdna:novel chromosome:V1.0:Gm16:31518766:31520692:1 gene:GLYMA16G27510 transcript:GLYMA16G27510.1 | 0 | 213 | 0 | 43 | 43 | 2.5 | 5' AGGGATAGGTAAAACAATGAC 3' ||o|||||||||||||oo|| 3' ACCCACCTTATCCATTTTGTTGTTGATTGATA 5' |
839 | Glycine max | TGAAGCTGCCAGCATGATCTT | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA08G10550.2 cdna:novel chromosome:V1.0:Gm08:7667326:7674265:-1 gene:GLYMA08G10550 transcript:GLYMA08G10550.2 | 0 | 3570 | 0.02 | 160 | 32 | 3.5 | 5' TGAAGCTGCCAGCATGATCTT 3' ||||||||||| ||||||o 3' CTTATGTTCGACGGTCGGACTAGAGTGTCCCA 5' |
840 | Glycine max | TGCACTGCCTCTTTCCTGGCT | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA08G13510.1 cdna:known chromosome:V1.0:Gm08:9884834:9886018:-1 gene:GLYMA08G13510 transcript:GLYMA08G13510.1 | 2 | 211 | 0.02 | 7 | 3.5 | 3 | 5' TGCACTGCCTCTTTCCTG-GCT 3' |||||||||||||o|| | ||o 3' GGTGACGTGACGGAGAAGGGTCTCGGTATAAT 5' |
841 | Glycine max | TCGGACCAGGCTTCATTCC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA08G13110.1 cdna:novel chromosome:V1.0:Gm08:9562597:9569062:1 gene:GLYMA08G13110 transcript:GLYMA08G13110.1 | 2 | 1092 | 0 | 42 | 8.4 | 1 | 5' TCGGACCAGGCTTCATTCC 3' o|||||||||||||||o|| 3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAAAC 5' |
842 | Glycine max | TCGGACCAGGCTTCATTCCC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA08G13110.1 cdna:novel chromosome:V1.0:Gm08:9562597:9569062:1 gene:GLYMA08G13110 transcript:GLYMA08G13110.1 | 2 | 1092 | 0 | 42 | 8.4 | 1.5 | 5' TCGGACCAGGCTTCATTCCC 3' o||||||||||||||| ||| 3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAAA 5' |
843 | Glycine max | TTATTGTAACTAATTTGTCGGT | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA04G03330.2 cdna:novel chromosome:V1.0:Gm04:2446812:2449903:-1 gene:GLYMA04G03330 transcript:GLYMA04G03330.2 | 2 | 226 | 0.03 | 19 | 4.75 | 4 | 5' TTATTGTAACTAATTTGTCGGT 3' ||||o||||| |||||o ||oo 3' AAGAAATAGCATTGTTTAAATCGCTGATTCGG 5' |
844 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA01G44471.1 cdna:known chromosome:V1.0:Gm01:55141915:55148004:-1 gene:GLYMA01G44471 transcript:GLYMA01G44471.1 | 0 | 835 | 0 | 131 | 26.2 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' ACTAAGGTGTCCGAAAGAACTTGCCAACGCCG 5' |
845 | Glycine max | TCGGACCAGGCTTCATTCC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA09G02750.1 cdna:novel chromosome:V1.0:Gm09:1901637:1907522:-1 gene:GLYMA09G02750 transcript:GLYMA09G02750.1 | 2 | 968 | 0 | 42 | 8.4 | 1 | 5' TCGGACCAGGCTTCATTCC 3' o|||||||||||||||o|| 3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAGAC 5' |
846 | Glycine max | TCGGACCAGGCTTCATTCCC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA09G02750.1 cdna:novel chromosome:V1.0:Gm09:1901637:1907522:-1 gene:GLYMA09G02750 transcript:GLYMA09G02750.1 | 2 | 968 | 0 | 42 | 8.4 | 1.5 | 5' TCGGACCAGGCTTCATTCCC 3' o||||||||||||||| ||| 3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5' |
847 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA07G04290.1 cdna:novel chromosome:V1.0:Gm07:3149413:3151946:-1 gene:GLYMA07G04290 transcript:GLYMA07G04290.1 | 2 | 728 | 0 | 74 | 14.8 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' TTGAAGGTGTCCGAAAGAACTTGCCAAAGACG 5' |
848 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA11G01060.1 cdna:novel chromosome:V1.0:Gm11:573836:577693:1 gene:GLYMA11G01060 transcript:GLYMA11G01060.1 | 0 | 486 | 0 | 131 | 26.2 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' ACTAAGGTGTCCGAAAGAACTTGCCAACGCCG 5' |
849 | Glycine max | TCGGACCAGGCTTCATTCC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA15G13640.1 cdna:novel chromosome:V1.0:Gm15:10250637:10256541:-1 gene:GLYMA15G13640 transcript:GLYMA15G13640.1 | 0 | 945 | 0 | 152 | 15.2 | 1 | 5' TCGGACCAGGCTTCATTCC 3' o|||||||||||||||o|| 3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAGAC 5' |
850 | Glycine max | TCGGACCAGGCTTCATTCCC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA15G13640.1 cdna:novel chromosome:V1.0:Gm15:10250637:10256541:-1 gene:GLYMA15G13640 transcript:GLYMA15G13640.1 | 0 | 945 | 0 | 152 | 15.2 | 1.5 | 5' TCGGACCAGGCTTCATTCCC 3' o||||||||||||||| ||| 3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5' |
851 | Glycine max | CAGCCAAGGATGACTTGCCG | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA14G01360.1 cdna:novel chromosome:V1.0:Gm14:766608:770587:1 gene:GLYMA14G01360 transcript:GLYMA14G01360.1 | 2 | 1555 | 0 | 11 | 5.5 | 1.5 | 5' CAGCCAAGGATGACTTGCCG 3' ||||||||o|||| |||||| 3' TTGTGTCGGTTCTTACTAAACGGCGAACTGTA 5' |
852 | Glycine max | TCGGACCAGGCTTCATTCC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA08G21620.3 cdna:novel chromosome:V1.0:Gm08:16441681:16450105:-1 gene:GLYMA08G21620 transcript:GLYMA08G21620.3 | 2 | 866 | 0 | 152 | 15.2 | 0.5 | 5' TCGGACCAGGCTTCATTCC 3' o|||||||||||||||||| 3' CTTAGGCCTGGTCCGAAGTAAGGTCCGTAAAC 5' |
853 | Glycine max | AGGTGGGCATACTGTCAACT | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA14G25810.2 cdna:novel chromosome:V1.0:Gm14:31317051:31322038:-1 gene:GLYMA14G25810 transcript:GLYMA14G25810.2 | 2 | 1568 | 0 | 5 | 2.5 | 3 | 5' AGGTGGGCATACTGTCAACT 3' |||||||||| || | |||| 3' TTTTTCCACCCGTAGGA-ATTTGAATTAATAA 5' |
854 | Glycine max | TCGGACCAGGCTTCATTCC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA04G09000.2 cdna:novel chromosome:V1.0:Gm04:7150718:7157032:1 gene:GLYMA04G09000 transcript:GLYMA04G09000.2 | 2 | 939 | 0 | 152 | 15.2 | 1 | 5' TCGGACCAGGCTTCATTCC 3' o|||||||||||||||o|| 3' CTTAGGCCTGGTCCGAAGTAGGGTCCGTAAAC 5' |
855 | Glycine max | TCGGACCAGGCTTCATTCCC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA04G09000.2 cdna:novel chromosome:V1.0:Gm04:7150718:7157032:1 gene:GLYMA04G09000 transcript:GLYMA04G09000.2 | 2 | 939 | 0 | 152 | 15.2 | 1.5 | 5' TCGGACCAGGCTTCATTCCC 3' o||||||||||||||| ||| 3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAAA 5' |
856 | Glycine max | TTGACAGAAGATAGAGAGCAC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA01G08056.1 cdna:novel chromosome:V1.0:Gm01:9051133:9057025:-1 gene:GLYMA01G08056 transcript:GLYMA01G08056.1 | 0 | 1408 | 0 | 55 | 11 | 1.5 | 5' TTGACAGAAGATAGAGAGCAC 3' o|||||||||| ||||||||| 3' ACTAGACTGTCTTCTCTCTCTCGTGTCGAACT 5' |
857 | Glycine max | TTCATTTTTAAAATAGGCATT | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA05G01240.4 cdna:novel chromosome:V1.0:Gm05:785189:792757:-1 gene:GLYMA05G01240 transcript:GLYMA05G01240.4 | 2 | 1884 | 0.01 | 2 | 0.333333 | 3 | 5' TTCATTTTTA-AAATAGGCATT 3' |||||o|||| |||||||| o| 3' TTAAAAGTAGAAATGTTTATCCGAGACCATTT 5' |
858 | Glycine max | TGACAGAAGAGAGTGAGCAC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA01G08056.1 cdna:novel chromosome:V1.0:Gm01:9051133:9057025:-1 gene:GLYMA01G08056 transcript:GLYMA01G08056.1 | 2 | 1407 | 0 | 7 | 1.4 | 1 | 5' TGACAGAAGAGAGTGAGCAC 3' ||||||||||||| |||||| 3' CTAGACTGTCTTCTCTCTCTCGTGTCGAACTA 5' |
859 | Glycine max | TTCCACAGCTTTCTTGAACTT | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA14G10100.3 cdna:novel chromosome:V1.0:Gm14:8199978:8204018:-1 gene:GLYMA14G10100 transcript:GLYMA14G10100.3 | 2 | 668 | 0.05 | 40 | 13.3333 | 3 | 5' TTCCACA-GCTTTCTTGAACTT 3' ||||||| |||||||||||| 3' CGGAAGGTGTCCGAAAGAACTTGCTACCGCAG 5' |
860 | Glycine max | ATATAGCATCGTGAGCAATCA | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA13G23520.1 cdna:known chromosome:V1.0:Gm13:26916462:26919844:-1 gene:GLYMA13G23520 transcript:GLYMA13G23520.1 | 1 | 298 | 0 | 16 | 5.33333 | 4 | 5' ATATAGCATCGTGAGCAATCA 3' |||o|||||| o|o|||o|| 3' AAAGTATGTCGTAGGTTTTGTTGGTGGGTATG 5' |
861 | Glycine max | TTGAGCCGTGCCAATATCA | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA01G33270.1 cdna:novel chromosome:V1.0:Gm01:45164207:45167759:-1 gene:GLYMA01G33270 transcript:GLYMA01G33270.1 | 0 | 1208 | 0 | 399 | 133 | 1.5 | 5' TTGAGCCGTGCCAATATCA 3' ||||||||o||||||||| 3' CACTAACTCGGCGCGGTTATAGGGAACGCGTA 5' |
862 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA17G35100.2 cdna:novel chromosome:V1.0:Gm17:39088426:39092940:1 gene:GLYMA17G35100 transcript:GLYMA17G35100.2 | 2 | 1159 | 0 | 51 | 17 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' CGGAAGGTGTCCGAAAGAACTTGCTACCGCAG 5' |
863 | Glycine max | TTTGGATTGAAGGGAGCTC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA13G34710.1 cdna:novel chromosome:V1.0:Gm13:36249608:36253233:1 gene:GLYMA13G34710 transcript:GLYMA13G34710.1 | 1 | 1214 | 0 | 20 | 5 | 2 | 5' TTTGGATTGAAGGGAGCTC 3' ||||| |||||||| |||| 3' AACAAAACCAAACTTCCCCCGAGATAACACTT 5' |
864 | Glycine max | TGAAGCTGCCAGCATGATCT | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA15G00770.2 cdna:novel chromosome:V1.0:Gm15:462686:466246:-1 gene:GLYMA15G00770 transcript:GLYMA15G00770.2 | 0 | 1634 | 0 | 124 | 124 | 2 | 5' TGAAGCTGCCAGCATGATCT 3' ||||||||||||| || ||| 3' GTAGACTTCGACGGTCG-ACAAGATGGCAGGA 5' |
865 | Glycine max | TGCCTGGCTCCCTGTATGCC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA12G29720.1 cdna:novel chromosome:V1.0:Gm12:33175269:33178907:-1 gene:GLYMA12G29720 transcript:GLYMA12G29720.1 | 0 | 1654 | 0 | 120 | 120 | 0 | 5' TGCCTGGCTCCCTGTATGCC 3' |||||||||||||||||||| 3' TCGTACGGACCGAGGGACATACGGACGTCCTC 5' |
866 | Glycine max | TGCCTGGCTCCCTGTATGCC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA14G33730.1 cdna:novel chromosome:V1.0:Gm14:41889885:41894154:1 gene:GLYMA14G33730 transcript:GLYMA14G33730.1 | 0 | 1184 | 0 | 94 | 47 | 0.5 | 5' TGCCTGGCTCCCTGTATGCC 3' ||||||||||||||o||||| 3' TAGTACGGACCGAGGGACGTACGGTCGTCCTT 5' |
867 | Glycine max | CAGAGAGCAGAAACAGAACTG | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA08G15090.1 cdna:known chromosome:V1.0:Gm08:10946832:10949797:1 gene:GLYMA08G15090 transcript:GLYMA08G15090.1 | 0 | 660 | 0.02 | 55 | 55 | 4 | 5' CAGAGAGCAGAAACAGAACTG 3' |||o|| ||||||| ||||o 3' AACGATCTTTCATCTTTGT-TTGATAACAGAT 5' |
868 | Glycine max | ATGCACTGCCTGTTCCCTGGC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA06G10490.1 cdna:known chromosome:V1.0:Gm06:7957133:7959717:1 gene:GLYMA06G10490 transcript:GLYMA06G10490.1 | 1 | 889 | 0 | 33 | 8.25 | 4 | 5' ATGCACTGCCTGTTCCCTGGC 3' |||||| ||o||o|||||| 3' CTGAAACGTGA-GGGCAGGGGACCAACAACTT 5' |
869 | Glycine max | TGAAGCTGCCAGCATGATCT | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA14G38940.1 cdna:novel chromosome:V1.0:Gm14:48094947:48103242:-1 gene:GLYMA14G38940 transcript:GLYMA14G38940.1 | 1 | 2943 | 0 | 160 | 32 | 3 | 5' TGAAGCTGCCAGCATGATCT 3' ||||||||||| |||||| 3' CTTATGTTCGACGGTCGGACTAGATTCTCCCA 5' |
870 | Glycine max | AATCGTCTTCTTCCTCGCTTT | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA01G36460.2 cdna:novel chromosome:V1.0:Gm01:48974135:48978029:-1 gene:GLYMA01G36460 transcript:GLYMA01G36460.2 | 1 | 539 | 0 | 43 | 21.5 | 4 | 5' AATCGTCTTCTTCCTCGCTTT 3' ||||| ||o|||| o|||o|o 3' AGTCTTAGCCGAGGAAGAGGCGGAGCTCGAAC 5' |
871 | Glycine max | TTGAGCCGTGCCAATATCA | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA01G18040.1 cdna:novel chromosome:V1.0:Gm01:22484145:22487576:-1 gene:GLYMA01G18040 transcript:GLYMA01G18040.1 | 2 | 1768 | 0 | 13 | 6.5 | 1.5 | 5' TTGAGCCGTGCCAATATCA 3' ||||||||o||||||||| 3' CACTAACTCGGCGCGGTTATAGGGTACGCGCT 5' |
872 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA15G19460.1 cdna:novel chromosome:V1.0:Gm15:16759912:16762499:-1 gene:GLYMA15G19460 transcript:GLYMA15G19460.1 | 2 | 450 | 0 | 16 | 16 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' TTGAAGGTGTCCGAAAGAACTTGCTAAGAAGG 5' |
873 | Glycine max | TCCAAAGGGATCGCATTGATC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA10G02630.1 cdna:novel chromosome:V1.0:Gm10:1861030:1864010:-1 gene:GLYMA10G02630 transcript:GLYMA10G02630.1 | 2 | 2166 | 0 | 2 | 0.5 | 1 | 5' TCCAAAGGGATCGCATTGATC 3' |||||||||||||||||| || 3' CTGTAGGTTTCCCTAGCGTAAC-AGAGGTCGA 5' |
874 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA01G35145.1 cdna:novel chromosome:V1.0:Gm01:47696214:47700220:1 gene:GLYMA01G35145 transcript:GLYMA01G35145.1 | 0 | 556 | 0 | 260 | 130 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' ACTAAGGTGTCCGAAAGAACTTGCCATTGCGG 5' |
875 | Glycine max | TTCCACAGCTTTCTTGAACTT | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA11G12140.5 cdna:novel chromosome:V1.0:Gm11:8671668:8673811:1 gene:GLYMA11G12140 transcript:GLYMA11G12140.5 | 0 | 645 | 0.04 | 17 | 2.83333 | 4 | 5' TTCCACAGCTTTCTTGAACTT 3' ||||| ||||| |||| ||| 3' AGACAAGGTTTCGAA-GAACACGAAACTAAAG 5' |
876 | Glycine max | AGAATTTGTGGGAATGGGCTGA | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA19G03410.2 cdna:novel chromosome:V1.0:Gm19:3423610:3427657:1 gene:GLYMA19G03410 transcript:GLYMA19G03410.2 | 2 | 1600 | 0.05 | 18 | 6 | 4 | 5' AGAATTTGTGGGAATGGGCTGA 3' ||||||||||oo|| ||| || 3' CGTTTCTTAAACACTTTT-CCCCCCTTTTTCT 5' |
877 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA12G01730.2 cdna:novel chromosome:V1.0:Gm12:1061212:1065353:1 gene:GLYMA12G01730 transcript:GLYMA12G01730.2 | 2 | 576 | 0 | 131 | 26.2 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' ACTAAGGTGTCCGAAAGAACTTGCCAACGCCG 5' |
878 | Glycine max | TGAGCCGTGCCAATATCAC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA09G40830.1 cdna:novel chromosome:V1.0:Gm09:45645746:45647859:1 gene:GLYMA09G40830 transcript:GLYMA09G40830.1 | 0 | 1305 | 0.03 | 109 | 54.5 | 3.5 | 5' TGAGCCGTGCCAATATCAC 3' | |o|| ||||||o|o||| 3' GGTCAGTTGGAACGGTTGTGGTGTTTTCTGTA 5' |
879 | Glycine max | AGGGATAGGTAAAACAATGAC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA12G02510.4 cdna:novel chromosome:V1.0:Gm12:1615086:1624839:1 gene:GLYMA12G02510 transcript:GLYMA12G02510.4 | 2 | 1325 | 0.04 | 56 | 14 | 4 | 5' AGGGATAGGTAAAACAATGAC 3' | |o|||o||||||| |||| 3' CAGGT-CTTATTCATTTTGGTACTCTTTTACT 5' |
880 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA03G02500.1 cdna:known chromosome:V1.0:Gm03:2276240:2279952:-1 gene:GLYMA03G02500 transcript:GLYMA03G02500.1 | 2 | 793 | 0 | 61 | 20.3333 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' ACAAAGGTGTCCGAAAGAACTTGCTAAAGCTG 5' |
881 | Glycine max | CAAACCTCCGTAGCCTGTATC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA15G06570.1 cdna:novel chromosome:V1.0:Gm15:4643944:4647571:-1 gene:GLYMA15G06570 transcript:GLYMA15G06570.1 | 2 | 2645 | 0 | 85 | 85 | 3 | 5' CAAACCTCCGTAGCCTGTATC 3' |||| |||||o|o||| |||| 3' CATAGTTTTGAGGCGTTGGA-ATAGTGTCAGG 5' |
882 | Glycine max | CTGCCATTGCCATTGCCATTG | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA11G12471.1 cdna:novel chromosome:V1.0:Gm11:8907787:8908946:-1 gene:GLYMA11G12471 transcript:GLYMA11G12471.1 | 2 | 571 | 0.05 | 18 | 18 | 3.5 | 5' CTGCCATTGCCATTGCCATTG 3' |o||||| ||||oo||||oo| 3' CGGTGGCGGTATCGGTGGCGGTGGCGGTGGCG 5' |
883 | Glycine max | ATATAGCATCGTGAGCAATCA | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA13G23520.2 cdna:known chromosome:V1.0:Gm13:26916462:26919844:-1 gene:GLYMA13G23520 transcript:GLYMA13G23520.2 | 1 | 303 | 0.01 | 16 | 5.33333 | 4 | 5' ATATAGCATCGTGAGCAATCA 3' |||o|||||| o|o|||o|| 3' AAAGTATGTCGTAGGTTTTGTTGGTGACAAGG 5' |
884 | Glycine max | TCGGACCAGGCTTCATTCC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA05G21726.1 cdna:novel chromosome:V1.0:Gm05:26595908:26602630:1 gene:GLYMA05G21726 transcript:GLYMA05G21726.1 | 2 | 193 | 0 | 152 | 15.2 | 0.5 | 5' TCGGACCAGGCTTCATTCC 3' o|||||||||||||||||| 3' CTTAGGCCTGGTCCGAAGTAAGGTACGTAAAC 5' |
885 | Glycine max | TGAAGCTGCCAGCATGATCT | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA13G29320.2 cdna:novel chromosome:V1.0:Gm13:32246000:32253106:1 gene:GLYMA13G29320 transcript:GLYMA13G29320.2 | 2 | 3356 | 0.05 | 33 | 8.25 | 3 | 5' TGAAGCTGCCAGCATGATCT 3' ||||||||||| |||||| 3' TTTATGTTCGACGGTCGGACTAGAGTGTCCCA 5' |
886 | Glycine max | TTTGGATTGAAGGGAGCTCTA | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA19G42890.4 cdna:novel chromosome:V1.0:Gm19:48706603:48709235:1 gene:GLYMA19G42890 transcript:GLYMA19G42890.4 | 2 | 378 | 0.05 | 22 | 4.4 | 4 | 5' TTTGGATTGAAGGGAGCTCTA 3' || ||||||||o | ||||o| 3' CAATAATCCTAACTTTACGCGAGGTCAACTGT 5' |
887 | Glycine max | TTGAGCCGTGCCAATATCA | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA11G17490.1 cdna:novel chromosome:V1.0:Gm11:13613694:13616986:1 gene:GLYMA11G17490 transcript:GLYMA11G17490.1 | 0 | 1658 | 0 | 13 | 6.5 | 1.5 | 5' TTGAGCCGTGCCAATATCA 3' ||||||||o||||||||| 3' CACTAACTCGGCGCGGTTATAGGGCACGCGCT 5' |
888 | Glycine max | TCATCATCATCATCATCTTGC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA07G31880.2 cdna:known chromosome:V1.0:Gm07:36863009:36864165:1 gene:GLYMA07G31880 transcript:GLYMA07G31880.2 | 1 | 464 | 0.04 | 6 | 0.428571 | 3 | 5' TCATCATCATCATCATCTTGC 3' |||||||||| ||||||| | 3' AAGTAGTAGTAGTAAAAGTAGAAGGAGAAACA 5' |
889 | Glycine max | TGGAGAAGCAGGGCACGTGCA | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA06G21020.1 cdna:known chromosome:V1.0:Gm06:17431771:17433898:1 gene:GLYMA06G21020 transcript:GLYMA06G21020.1 | 2 | 1106 | 0.01 | 10 | 2 | 2.5 | 5' TGGAGAAGCAGGGCACGTGCA 3' ||||||||||||||||||o 3' CCTAACCTCTTCGTCCCGTGCATTCGTCTTAG 5' |
890 | Glycine max | AAGCTCAGGAGGGATAGCACC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA10G35510.2 cdna:novel chromosome:V1.0:Gm10:43728062:43744504:-1 gene:GLYMA10G35510 transcript:GLYMA10G35510.2 | 2 | 1277 | 0.04 | 5 | 2.5 | 4 | 5' AAGCTCAGGAGGGATAGCACC 3' ||||o|||o|o|| o|||| | 3' TCAGTTCGGGTCTTTCCGGTCGTTGGAGAAAC 5' |
891 | Glycine max | TGACAGAAGAGAGTGAGCAC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA17G08840.2 cdna:novel chromosome:V1.0:Gm17:6526544:6532020:-1 gene:GLYMA17G08840 transcript:GLYMA17G08840.2 | 2 | 1900 | 0 | 5 | 1.25 | 1 | 5' TGACAGAAGAGAGTGAGCAC 3' ||||||||||||| |||||| 3' CTCTACTGTCTTCTCTCTCTCGTGTTGTTCTC 5' |
892 | Glycine max | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA09G34565.1 cdna:novel chromosome:V1.0:Gm09:40925699:40929850:1 gene:GLYMA09G34565 transcript:GLYMA09G34565.1 | 0 | 610 | 0 | 260 | 130 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' ACTAAGGTGTCCGAAAGAACTTGCCATTGCTG 5' |
893 | Glycine max | TCATCATCATCATCTTCTTCT | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA08G06370.1 cdna:novel chromosome:V1.0:Gm08:4519476:4521326:1 gene:GLYMA08G06370 transcript:GLYMA08G06370.1 | 1 | 1035 | 0.02 | 6 | 0.428571 | 2.5 | 5' TCATCATCATCATCTTCTTCT 3' ||||||||||||o| || ||| 3' AAGTAGTAGTAGTAGTGGTAGTAGAAGAAGAA 5' |
894 | Glycine max | TCATCATCATCATCATCTTGC | alignment | plot | GSM848965_Cot100_unique_seq_count | GLYMA08G06370.1 cdna:novel chromosome:V1.0:Gm08:4519476:4521326:1 gene:GLYMA08G06370 transcript:GLYMA08G06370.1 | 1 | 1035 | 0.02 | 6 | 0.428571 | 2.5 | 5' TCATCATCATCATCATCTTGC 3' ||||||||||||o|||| | | 3' AAGTAGTAGTAGTAGTGGTAGTA-GAAGAAGA 5' |
895 | Hordeum vulgare | TCCTAAATACTTGTTGTTGGG | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_52639.4 cdna:novel chromosome:030312v2:7:533269741:533273012:1 gene:MLOC_52639 transcript:MLOC_52639.4 | 2 | 1359 | 0 | 36 | 3.6 | 0 | 5' TCCTAAATACTTGTTGTTGGG 3' ||||||||||||||||||||| 3' GGCAAGGATTTATGAACAACAACCCCTTTTGA 5' |
896 | Hordeum vulgare | TTTGGGACGGAGGGAGTACTG | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_26643.6 cdna:novel chromosome:030312v2:4:90497913:90501180:1 gene:MLOC_26643 transcript:MLOC_26643.6 | 1 | 1113 | 0 | 20 | 2.85714 | 2.5 | 5' TTTGGGACGGAGGGAGTACTG 3' ||| ||||||||o||||||| 3' CATAAAAGCCTGCCTCTCTCATGAGAGAATAG 5' |
897 | Hordeum vulgare | TATGGGACGGAGGGAGTATCT | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_26643.6 cdna:novel chromosome:030312v2:4:90497913:90501180:1 gene:MLOC_26643 transcript:MLOC_26643.6 | 1 | 1113 | 0 | 20 | 2.85714 | 3.5 | 5' TATGGGACGGAGGGAGTATCT 3' | | ||||||||o||||| || 3' CATAAAAGCCTGCCTCTCTCAT-GAGAGAATA 5' |
898 | Hordeum vulgare | TATGGGACGGAGGGAGTATCT | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_43138.1 cdna:novel chromosome:030312v2:5HS:8583045:8586254:-1 gene:MLOC_43138 transcript:MLOC_43138.1 | 2 | 1440 | 0 | 5 | 2.5 | 2 | 5' TATGGGACGGAGGGAGTATCT 3' ||||||||||||||||| | | 3' TGTAATACCCTGCCTCCCTCACA-ATGCTGAG 5' |
899 | Hordeum vulgare | TATTATGGGACGGAGGGAGTA | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_58213.3 cdna:novel chromosome:030312v2:4:491585828:491587718:-1 gene:MLOC_58213 transcript:MLOC_58213.3 | 2 | 1476 | 0 | 3 | 0.75 | 1 | 5' TATTATGGGACGGAGGGAGTA 3' |||| |||||||||||||||| 3' GTTAATAAAACCCTGCCTCCCTCATGACATAT 5' |
900 | Hordeum vulgare | TATAGTACTCCCTCCGTCCGG | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_26643.6 cdna:novel chromosome:030312v2:4:90497913:90501180:1 gene:MLOC_26643 transcript:MLOC_26643.6 | 2 | 1217 | 0 | 7 | 1 | 3 | 5' TATAGTACTCCCTCCGTCCGG 3' ||o| |||||||| |o||||| 3' TATGATGT-ATGAGGGAAGTAGGCCTTAATGA 5' |
901 | Hordeum vulgare | TTTGGGACGGAGGGAGTACTG | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_53316.1 cdna:known chromosome:030312v2:1:416027895:416032751:1 gene:MLOC_53316 transcript:MLOC_53316.1 | 2 | 3455 | 0 | 8 | 0.888889 | 1 | 5' TTTGGGACGGAGGGAGTACTG 3' ||||||||||||o|||||||o 3' AATAAAACCCTGCCTCTCTCATGATTAAATCA 5' |
902 | Hordeum vulgare | TATGGGACGGAGGGAGTATCT | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_53316.1 cdna:known chromosome:030312v2:1:416027895:416032751:1 gene:MLOC_53316 transcript:MLOC_53316.1 | 2 | 3455 | 0.01 | 8 | 0.888889 | 2.5 | 5' TATGGGACGGAGGGAGTATCT 3' | ||||||||||o||||| || 3' AATAAAACCCTGCCTCTCTCAT-GATTAAATC 5' |
903 | Hordeum vulgare | AGTACTTCCTCCGTCCCAAAA | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_54692.6 cdna:novel chromosome:030312v2:2:465643059:465648897:-1 gene:MLOC_54692 transcript:MLOC_54692.6 | 2 | 1187 | 0 | 12 | 2 | 3 | 5' AGTACTTCCTCCGTCCCAAAA 3' |o||||o|||| ||| ||||| 3' TACTTTATGAGGGAGACAGTGTTTTCTATTCA 5' |
904 | Hordeum vulgare | TATTATGGGACGGAGGGAGTA | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_48886.1 cdna:novel contig:220312v1:morex_contig_331488:20:2271:1 gene:MLOC_48886 transcript:MLOC_48886.1 | 2 | 112 | 0 | 7 | 7 | 2 | 5' TATTATGGGACGGAGGGAGTA 3' |||| ||||| |||||||||| 3' GTGAATAAAACCCTACCTCCCTCATGTTTTAT 5' |
905 | Hordeum vulgare | TATTTCTTTACAGAGGGAGTA | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_56099.2 cdna:novel chromosome:030312v2:5:215441467:215449220:-1 gene:MLOC_56099 transcript:MLOC_56099.2 | 2 | 1492 | 0.05 | 12 | 2 | 3 | 5' TATTTCTTTACAGAGGGAGTA 3' || |o|||||||o|o||||o| 3' TCATAT-AGGAAATGTTTTCCTCGTTATCGTC 5' |
906 | Hordeum vulgare | TTACTCCCTCCGTCCTAAAAT | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_52900.2 cdna:novel chromosome:030312v2:3HS:1323545:1325511:1 gene:MLOC_52900 transcript:MLOC_52900.2 | 2 | 1428 | 0.01 | 10 | 5 | 3.5 | 5' TTACTCCCTCCGTCCTAAAAT 3' | ||| ||||||| |o||||| 3' AGTGACTGATGGAGGCATGGTTTTATATTCAG 5' |
907 | Hordeum vulgare | GTACTCCCTCCGTCCTAAAAT | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_52900.2 cdna:novel chromosome:030312v2:3HS:1323545:1325511:1 gene:MLOC_52900 transcript:MLOC_52900.2 | 2 | 1428 | 0.05 | 10 | 5 | 3.5 | 5' GTACTCCCTCCGTCCTAAAAT 3' | ||| ||||||| |o||||| 3' GTGAC-TGATGGAGGCATGGTTTTATATTCAG 5' |
908 | Hordeum vulgare | TCCACAGGCTTTCTTGAACTG | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_67201.1 cdna:known chromosome:030312v2:4:31377429:31381415:-1 gene:MLOC_67201 transcript:MLOC_67201.1 | 2 | 722 | 0 | 28 | 9.33333 | 2 | 5' TCCACAGGCTTTCTTGAACTG 3' |||||| |||||||||||| | 3' CGGAAGGTGTACGAAAGAACTTG-CTACCGCA 5' |
909 | Hordeum vulgare | GAGCTCCTATCATTCCAATGA | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_10773.6 cdna:novel chromosome:030312v2:2:455211817:455213748:-1 gene:MLOC_10773 transcript:MLOC_10773.6 | 2 | 617 | 0 | 18 | 3 | 3 | 5' GAGCTCCTATCATTCCAATGA 3' ||o|| |o||||oo||||||| 3' AGTTCTTGACGGTAGTGGGGTTACTATTTTCG 5' |
910 | Hordeum vulgare | TCGGACCAGGCTTCATTCC | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_79063.2 cdna:novel chromosome:030312v2:3:89144249:89147977:-1 gene:MLOC_79063 transcript:MLOC_79063.2 | 2 | 146 | 0 | 65 | 7.22222 | 1 | 5' TCGGACCAGGCTTCATTCC 3' o|||||||||||||||o|| 3' CTTAGGCCTGGTCCGAAGTAGGGTCCGTAAAC 5' |
911 | Hordeum vulgare | TCGGACCAGGCTTCATTCCC | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_79063.2 cdna:novel chromosome:030312v2:3:89144249:89147977:-1 gene:MLOC_79063 transcript:MLOC_79063.2 | 2 | 146 | 0 | 65 | 7.22222 | 1.5 | 5' TCGGACCAGGCTTCATTCCC 3' o||||||||||||||| ||| 3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAAA 5' |
912 | Hordeum vulgare | TCCTAAATACTTGTTGTTGGG | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_10773.6 cdna:novel chromosome:030312v2:2:455211817:455213748:-1 gene:MLOC_10773 transcript:MLOC_10773.6 | 0 | 219 | 0 | 36 | 3.6 | 0 | 5' TCCTAAATACTTGTTGTTGGG 3' ||||||||||||||||||||| 3' GGCAAGGATTTATGAACAACAACCCCTCTTGA 5' |
913 | Hordeum vulgare | TGACAGAAGAGAGTGAGCACA | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_11199.7 cdna:known chromosome:030312v2:6HS:3424827:3430372:-1 gene:MLOC_11199 transcript:MLOC_11199.7 | 0 | 2791 | 0.02 | 20 | 2.85714 | 3 | 5' TGACAGAAGAGAGTGAGCACA 3' ||||||||||||| ||||| 3' ACGAACTGTCTTCTCTCTCTCGTACGACTTCT 5' |
914 | Hordeum vulgare | TATTTCTTTACGGAGGGAGTA | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_56099.6 cdna:novel chromosome:030312v2:5:215442226:215449206:-1 gene:MLOC_56099 transcript:MLOC_56099.6 | 0 | 1439 | 0.02 | 12 | 2 | 3.5 | 5' TATTTCTTTACGGAGGGAGTA 3' || |o||||||oo|o||||o| 3' TCATAT-AGGAAATGTTTTCCTCGTTATCGTC 5' |
915 | Hordeum vulgare | TTATTTTGGGACGGAGGGAGT | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_34489.2 cdna:known chromosome:030312v2:1H:14965287:14969538:1 gene:MLOC_34489 transcript:MLOC_34489.2 | 2 | 1238 | 0 | 11 | 5.5 | 2.5 | 5' TTATTTTGGGACGGAGGGAGT 3' |o|||o|||||| ||o||||| 3' AGTGAGTAAGACCCTGACTTCCTCATGTTTTA 5' |
916 | Hordeum vulgare | TCCACAGGCTTTCTTGAACTG | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_64055.3 cdna:novel chromosome:030312v2:7HS:3568107:3569803:-1 gene:MLOC_64055 transcript:MLOC_64055.3 | 1 | 831 | 0 | 10 | 2.5 | 1 | 5' TCCACAGGCTTTCTTGAACTG 3' ||||||||||||||||||| | 3' ACCAAGGTGTCCGAAAGAACTTGCCAAGAACG 5' |
917 | Hordeum vulgare | ACTCCCTCTGTCCCAAAATAG | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_52900.2 cdna:novel chromosome:030312v2:3HS:1323545:1325511:1 gene:MLOC_52900 transcript:MLOC_52900.2 | 2 | 1426 | 0.04 | 11 | 5.5 | 3.5 | 5' ACTCCCTCTGTCCCAAAATAG 3' ||| ||||o|| |||||||| 3' TGACTGATGGAGGCATGGTTTTATATTCAGCA 5' |
918 | Hordeum vulgare | CTCCGTTCCTAAATATAAGTT | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_10773.6 cdna:novel chromosome:030312v2:2:455211817:455213748:-1 gene:MLOC_10773 transcript:MLOC_10773.6 | 2 | 225 | 0 | 4 | 2 | 2.5 | 5' CTCCGTTCCTAAATATAAGTT 3' |||||||||||||||o ||| 3' GAGGGAGGCAAGGATTTATGAACAACAACCCC 5' |
919 | Hordeum vulgare | CGATTCCGTAGTCCATGAGCG | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_10392.3 cdna:novel chromosome:030312v2:2:29135635:29144630:1 gene:MLOC_10392 transcript:MLOC_10392.3 | 2 | 2695 | 0.04 | 8 | 0.888889 | 3 | 5' CGATTCCGTAGTCCATGAGCG 3' |||| ||||||| ||| |||| 3' TTTAGCTATGGCATCATGTA-TCGCCATTCGC 5' |
920 | Hordeum vulgare | TACTCCCTCCGTTCCAAAATA | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_52900.2 cdna:novel chromosome:030312v2:3HS:1323545:1325511:1 gene:MLOC_52900 transcript:MLOC_52900.2 | 2 | 1427 | 0 | 17 | 8.5 | 3 | 5' TACTCCCTCCGTTCCAAAATA 3' ||| ||||||| |||||||| 3' GTGACTGATGGAGGCATGGTTTTATATTCAGC 5' |
921 | Hordeum vulgare | TATATACTCCCTCCGTCCGGA | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_20184.2 cdna:novel chromosome:030312v2:3HS:1959986:1965218:1 gene:MLOC_20184 transcript:MLOC_20184.2 | 2 | 1847 | 0.02 | 40 | 13.3333 | 2.5 | 5' TATATACTCCCTCCGTCCGGA 3' o| ||||||||||||| |||| 3' AAAAGTTTATGAGGGAGGCAAGCCTTTGTTCA 5' |
922 | Hordeum vulgare | AAGCCAAGGATGAGTTGCCTG | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_67781.5 cdna:known chromosome:030312v2:2HS:6286392:6289320:-1 gene:MLOC_67781 transcript:MLOC_67781.5 | 2 | 993 | 0 | 12 | 2.4 | 2.5 | 5' AAGCCAAGGATGAGTTGCCTG 3' |||||||||||||o||||| 3' AGTATTCGGTTCCTACTTAACGGTGGCCGCGG 5' |
923 | Hordeum vulgare | TTTGGGACGGAGGGAGTACTG | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_55628.1 cdna:novel chromosome:030312v2:6:459158255:459167089:-1 gene:MLOC_55628 transcript:MLOC_55628.1 | 2 | 4138 | 0.01 | 61 | 7.625 | 2.5 | 5' TTTGGGACGGAGGGAGTACTG 3' || ||o||||| ||||||||| 3' TATAAATCCTTGCCTACCTCATGACCTGTGCC 5' |
924 | Hordeum vulgare | TATAGTACTCCCTCCGTCCGG | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_20184.2 cdna:novel chromosome:030312v2:3HS:1959986:1965218:1 gene:MLOC_20184 transcript:MLOC_20184.2 | 2 | 1848 | 0 | 18 | 6 | 3 | 5' TATAGTACTCCCTCCGTCCGG 3' o| |o|||||||||||| ||| 3' AAAAGT-TTATGAGGGAGGCAAGCCTTTGTTC 5' |
925 | Hordeum vulgare | TTTTGGGACGGAGTGAGTATT | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_26643.6 cdna:novel chromosome:030312v2:4:90497913:90501180:1 gene:MLOC_26643 transcript:MLOC_26643.6 | 2 | 1114 | 0.01 | 11 | 1.57143 | 2.5 | 5' TTTTGGGACGGAGTGAGTATT 3' |||| |||||||| |||||o| 3' TCATAAAAGCCTGCCTCTCTCATGAGAGAATA 5' |
926 | Hordeum vulgare | TTTTGGGACGGAGGGAGTAAC | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_26643.6 cdna:novel chromosome:030312v2:4:90497913:90501180:1 gene:MLOC_26643 transcript:MLOC_26643.6 | 2 | 1114 | 0 | 11 | 1.57143 | 2.5 | 5' TTTTGGGACGGAGGGAGTAAC 3' |||| ||||||||o||||| | 3' TCATAAAAGCCTGCCTCTCTCAT-GAGAGAAT 5' |
927 | Hordeum vulgare | TTTTGGAACGGAGGGAGTA | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_26643.6 cdna:novel chromosome:030312v2:4:90497913:90501180:1 gene:MLOC_26643 transcript:MLOC_26643.6 | 2 | 1114 | 0 | 11 | 1.57143 | 2 | 5' TTTTGGAACGGAGGGAGTA 3' |||o|| ||||||o||||| 3' CATAAAAGCC-TGCCTCTCTCATGAGAGAATA 5' |
928 | Hordeum vulgare | GCCACCGCAGCCGCTGCCGCA | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_43909.1 cdna:novel chromosome:030312v2:1:900801:906383:1 gene:MLOC_43909 transcript:MLOC_43909.1 | 2 | 2088 | 0.05 | 7 | 7 | 3 | 5' GCCACCGCAGCCGCTGCCGCA 3' ||||||o| |||||o||||| 3' TGGTCGGTGGTG-CGGCGGCGGCGAGGACCAG 5' |
929 | Hordeum vulgare | AAGCCAAGGATGAGTTGCCTG | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_62730.2 cdna:known chromosome:030312v2:4:501096251:501099501:1 gene:MLOC_62730 transcript:MLOC_62730.2 | 2 | 1014 | 0 | 98 | 32.6667 | 2 | 5' AAGCCAAGGATGAGTTGCCTG 3' ||||||||||||| ||||| | 3' TGTATTCGGTTCCTACTAAACGGTCCCCCGTT 5' |
930 | Hordeum vulgare | TACTACTCCCTCTGTCCCAAA | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_16305.1 cdna:known chromosome:030312v2:7:423890823:423893423:1 gene:MLOC_16305 transcript:MLOC_16305.1 | 2 | 47 | 0 | 5 | 5 | 2 | 5' TACTACTCCCTCTGTCCCAAA 3' | ||||| ||||||||||||| 3' ATGAAAGATGATGGAGACAGGGTTTTATTCAC 5' |
931 | Hordeum vulgare | CCGTTGAGTGCAGCGTTGATG | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_57090.1 cdna:novel chromosome:030312v2:6HS:3576185:3577861:-1 gene:MLOC_57090 transcript:MLOC_57090.1 | 2 | 1285 | 0 | 6 | 6 | 0 | 5' CCGTTGAGTGCAGCGTTGATG 3' ||||||||||||||||||||| 3' CCACGGCAACTCACGTCGCAACTACTTGGCAG 5' |
932 | Hordeum vulgare | ATTATGGAACGGAGGGAGT | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_3881.1 cdna:known chromosome:030312v2:5:482646165:482647970:-1 gene:MLOC_3881 transcript:MLOC_3881.1 | 2 | 1534 | 0.05 | 4 | 2 | 3 | 5' ATTATGGAACGGAGGGAGT 3' ||| ||o||||o| ||||| 3' AAGTTAA-ACTTTGCTTACCTCATGTTGTATC 5' |
933 | Hordeum vulgare | AAGCCAAGGATGAGTTGCCTG | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_76757.4 cdna:known chromosome:030312v2:5:17021024:17025606:1 gene:MLOC_76757 transcript:MLOC_76757.4 | 0 | 1653 | 0 | 45 | 7.5 | 3 | 5' AAGCCAAGGATGAGTTGCCTG 3' |||||||o||||o|||||oo 3' GGTACTCGGTTCTTACTTAACGGGTGCCTGTC 5' |
934 | Hordeum vulgare | AAGCCAAGGATGAGTTGCCTG | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_36554.1 cdna:known chromosome:030312v2:6:504853210:504857063:-1 gene:MLOC_36554 transcript:MLOC_36554.1 | 1 | 957 | 0 | 20 | 20 | 0 | 5' AAGCCAAGGATGAGTTGCCTG 3' ||||||||||||||||||||| 3' TTATTTCGGTTCCTACTCAACGGACTAGTAGT 5' |
935 | Hordeum vulgare | TTTTGGGACAGAGGGAGTAGA | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_58251.5 cdna:known chromosome:030312v2:1:402469628:402477057:1 gene:MLOC_58251 transcript:MLOC_58251.5 | 2 | 3068 | 0.01 | 8 | 1 | 3 | 5' TTTTGGGACAGAGGGAGTAGA 3' ||| || |||||||||||| | 3' TCATAAATCCATGTCTCCCTCAT-TGTCGCAT 5' |
936 | Hordeum vulgare | TTATGGGACAGAGGGAGTAAT | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_58251.5 cdna:known chromosome:030312v2:1:402469628:402477057:1 gene:MLOC_58251 transcript:MLOC_58251.5 | 2 | 3068 | 0.01 | 8 | 1 | 2.5 | 5' TTATGGGACAGAGGGAGTAAT 3' ||| || |||||||||||||o 3' CATAAAT-CCATGTCTCCCTCATTGTCGCATA 5' |
937 | Hordeum vulgare | TTATTTTGGGACGGAGGGAGT | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_62418.1 cdna:known chromosome:030312v2:1:405153016:405156721:-1 gene:MLOC_62418 transcript:MLOC_62418.1 | 2 | 151 | 0 | 3 | 3 | 2 | 5' TTATTTTGGGACGGAGGGAGT 3' ||||| |||||||||||||| 3' CTGATATAAATCCCTGCCTCCCTCATCTAGGA 5' |
938 | Hordeum vulgare | TATTATGGGACGGAGGGAGTA | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_57414.3 cdna:known chromosome:030312v2:4:530999410:531002030:-1 gene:MLOC_57414 transcript:MLOC_57414.3 | 2 | 1265 | 0 | 16 | 5.33333 | 3 | 5' TATTATGGGACGGAGGGAGTA 3' |||| |||o||o| ||||||| 3' GTAAATAAAACCTTGTCCCCCTCATCATCTCC 5' |
939 | Hordeum vulgare | ATTATGGAACGGAGGGAGT | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_4326.11 cdna:novel chromosome:030312v2:5:483673941:483679038:1 gene:MLOC_4326 transcript:MLOC_4326.11 | 2 | 172 | 0.01 | 6 | 2 | 2 | 5' ATTATGGAACGGAGGGAGT 3' ||| ||| ||||||||||| 3' TAAATAAAACCCTGCCTCCCTCATCTAGAAAG 5' |
940 | Hordeum vulgare | CGCAGCTGTAGTCGCCGGCGT | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_65066.2 cdna:novel chromosome:030312v2:2:233087088:233088804:-1 gene:MLOC_65066 transcript:MLOC_65066.2 | 2 | 510 | 0.02 | 22 | 7.33333 | 3 | 5' CGCAGCTGTAGTCGCCGGCGT 3' || |||o||||||||||o|| 3' CCCAGCTTCGGCATCAGCGGCTGCTCGCACGG 5' |
941 | Hordeum vulgare | TATTATGGGACGGAGGGAGTA | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_56507.1 cdna:novel chromosome:030312v2:2:24894587:24898152:1 gene:MLOC_56507 transcript:MLOC_56507.1 | 1 | 1143 | 0 | 4 | 0.8 | 2 | 5' TATTATGGGACGGAGGGAGTA 3' o||||||||| |o|||||||| 3' GAATGTAATACCCTCCTTCCCTCATTCTTAAT 5' |
942 | Hordeum vulgare | TATTTGCAGGTTTTAGGTCTAA | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_70446.3 cdna:novel chromosome:030312v2:7:2801779:2804764:1 gene:MLOC_70446 transcript:MLOC_70446.3 | 0 | 1363 | 0 | 25 | 3.125 | 2.5 | 5' TATTTGCAGGTTTTAGGTCTAA 3' o||||||||||||||o|||o| 3' TTTTGTAAACGTCCAAAATTCAGGTCTACCTT 5' |
943 | Hordeum vulgare | TATTATGGGACGGAGGGAGTA | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_65095.2 cdna:novel chromosome:030312v2:4HL:22603070:22604387:-1 gene:MLOC_65095 transcript:MLOC_65095.2 | 1 | 1159 | 0.01 | 17 | 5.66667 | 1.5 | 5' TATTATGGGACGGAGGGAGTA 3' |||| |||||||o|||||||| 3' ATGAATAAAACCCTGCTTCCCTCATCATAGAT 5' |
944 | Hordeum vulgare | GGGAGTGGGAGTGGGAGTGGG | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_4689.1 cdna:novel chromosome:030312v2:4HS:3687378:3687747:-1 gene:MLOC_4689 transcript:MLOC_4689.1 | 1 | 272 | 0.05 | 2 | 1 | 4 | 5' GGGAGTGGGAGTGGGAGTGGG 3' || |||||||||||o| o || 3' ACGCCCGTCACCCTCACCTTGGACCGCCGCTA 5' |
945 | Hordeum vulgare | TATTATGGGACGGAGGGAGTA | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_58552.5 cdna:novel chromosome:030312v2:2:475555959:475559690:-1 gene:MLOC_58552 transcript:MLOC_58552.5 | 2 | 466 | 0 | 4 | 0.8 | 2 | 5' TATTATGGGACGGAGGGAGTA 3' o||||||||||o| ||||||| 3' GAATGTAATACCCTGTCGCCCTCATTAAAGAT 5' |
946 | Hordeum vulgare | TCGGACCAGGCTTCATTCC | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_61603.3 cdna:known chromosome:030312v2:1:192064052:192072095:-1 gene:MLOC_61603 transcript:MLOC_61603.3 | 0 | 1046 | 0 | 80 | 16 | 1 | 5' TCGGACCAGGCTTCATTCC 3' o|||||||||||||||o|| 3' CTTAGGCCTGGTCCGAAGTAGGGTCCGTAGCC 5' |
947 | Hordeum vulgare | TCGGACCAGGCTTCATTCCC | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_61603.3 cdna:known chromosome:030312v2:1:192064052:192072095:-1 gene:MLOC_61603 transcript:MLOC_61603.3 | 0 | 1046 | 0 | 80 | 16 | 1.5 | 5' TCGGACCAGGCTTCATTCCC 3' o||||||||||||||| ||| 3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAGC 5' |
948 | Hordeum vulgare | TCGGACCAGGCTTCATTCC | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_44268.1 cdna:known chromosome:030312v2:2:540255156:540257216:1 gene:MLOC_44268 transcript:MLOC_44268.1 | 1 | 302 | 0 | 8 | 8 | 3 | 5' TCGGACCAGGCTTCATTCC 3' ||||||||||||| ||| 3' TCTTTGCCTGGTCCGAAGGAAGTGGCGGCACC 5' |
949 | Hordeum vulgare | TCGGACCAGGCTTCATTCC | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_33978.4 cdna:novel chromosome:030312v2:5:492709362:492713465:-1 gene:MLOC_33978 transcript:MLOC_33978.4 | 0 | 622 | 0 | 65 | 7.22222 | 1 | 5' TCGGACCAGGCTTCATTCC 3' o|||||||||||||||o|| 3' CTTAGGCCTGGTCCGAAGTAGGGTTGGTAAAC 5' |
950 | Hordeum vulgare | TCGGACCAGGCTTCATTCCC | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_33978.4 cdna:novel chromosome:030312v2:5:492709362:492713465:-1 gene:MLOC_33978 transcript:MLOC_33978.4 | 0 | 622 | 0 | 65 | 7.22222 | 1.5 | 5' TCGGACCAGGCTTCATTCCC 3' o||||||||||||||| ||| 3' CTTAGGCCTGGTCCGAAGTA-GGGTTGGTAAA 5' |
951 | Hordeum vulgare | CTTCCGTCCCAAAATAAGTGA | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_75925.3 cdna:known chromosome:030312v2:3HL:6935342:6940187:1 gene:MLOC_75925 transcript:MLOC_75925.3 | 2 | 1790 | 0.02 | 12 | 3 | 3 | 5' CTTCCGTCCCAAAATAAGTGA 3' |||||||||||||||||| 3' TGAAACAGGCAGGGTTTTATTCACAGAGTTGA 5' |
952 | Hordeum vulgare | ACTCCCTCTGTCCCAAAATAG | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_32803.1 cdna:novel chromosome:030312v2:5:559812611:559815128:-1 gene:MLOC_32803 transcript:MLOC_32803.1 | 2 | 1588 | 0 | 5 | 2.5 | 1 | 5' ACTCCCTCTGTCCCAAAATAG 3' ||||||||||| ||||||||| 3' ATGATGAGGGAGACAAGGTTTTATCCACAGAG 5' |
953 | Hordeum vulgare | GCCACCGCAGCCGCTGCCGCA | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_54588.1 cdna:known chromosome:030312v2:3:423499986:423508987:1 gene:MLOC_54588 transcript:MLOC_54588.1 | 2 | 244 | 0 | 8 | 4 | 2 | 5' GCCACCGCAGCCGCTGCCGCA 3' |||||||| ||||||||||| 3' GGTCCGGTGGCGACGGCGACGGCGGCGGTGGG 5' |
954 | Hordeum vulgare | TTTTGGAACGGAGGGAGTATC | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_26643.10 cdna:novel chromosome:030312v2:4:90497928:90501178:1 gene:MLOC_26643 transcript:MLOC_26643.10 | 2 | 975 | 0.05 | 11 | 1.57143 | 3.5 | 5' TTTTGGAACGGAGGGAGTATC 3' |||o|| ||||||o|||||o 3' CATAAAAGCC-TGCCTCTCTCATGAGAGAATA 5' |
955 | Hordeum vulgare | AATGCTCATATGCATCACAAT | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_13246.3 cdna:novel chromosome:030312v2:7:21323731:21327547:1 gene:MLOC_13246 transcript:MLOC_13246.3 | 0 | 848 | 0.05 | 19 | 6.33333 | 4 | 5' AATGCTCATATGCATCACAAT 3' || |o||||o||| |||||| 3' GTAAATA-GGGTATGCGTTGTGTTATCACAAG 5' |
956 | Hordeum vulgare | CTCTGTAAACTAATATAAGAC | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_73290.2 cdna:novel chromosome:030312v2:6:178934013:178934653:-1 gene:MLOC_73290 transcript:MLOC_73290.2 | 0 | 98 | 0.02 | 13 | 6.5 | 4 | 5' CTCTGTAAA-CTAATATAAGAC 3' ||||||||| |o||o|||| | 3' TAGGAGACATTTAGGTTGTATTGAGTATAGTG 5' |
957 | Hordeum vulgare | TATAGTACTCCCTCCGTCCCG | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_9522.1 cdna:novel chromosome:030312v2:1:124351345:124353037:1 gene:MLOC_9522 transcript:MLOC_9522.1 | 2 | 714 | 0.01 | 13 | 13 | 2.5 | 5' TATAGTACTCCCTCCGTCCCG 3' ||| |||||||||||||||o 3' TCATCTATGATGAGGGAGGCAGGGTATTTTCA 5' |
958 | Hordeum vulgare | TGACAGAAGAGAGTGAGCACA | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_37841.2 cdna:known chromosome:030312v2:7:214318191:214323478:1 gene:MLOC_37841 transcript:MLOC_37841.2 | 2 | 638 | 0 | 6 | 3 | 1 | 5' TGACAGAAGAGAGTGAGCACA 3' ||||||||||||| ||||||| 3' CTCGACTGTCTTCTCTCTCTCGTGTCAGGCTC 5' |
959 | Hordeum vulgare | TTTTGGGACAGAGGAAGTACT | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_5651.2 cdna:known chromosome:030312v2:4:87404865:87410843:-1 gene:MLOC_5651 transcript:MLOC_5651.2 | 2 | 2107 | 0.01 | 8 | 4 | 3 | 5' TTTTGGGACAGAGGAAGTACT 3' ||| || ||||||||||||| 3' CAATAAATCCATGTCTCCTTCATGTGGATATC 5' |
960 | Hordeum vulgare | TTATGGGACAGAGGGAGTACA | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_5651.2 cdna:known chromosome:030312v2:4:87404865:87410843:-1 gene:MLOC_5651 transcript:MLOC_5651.2 | 2 | 2107 | 0 | 8 | 4 | 2.5 | 5' TTATGGGACAGAGGGAGTACA 3' ||| || |||||||o|||||| 3' AATAAAT-CCATGTCTCCTTCATGTGGATATC 5' |
961 | Hordeum vulgare | CTGACAGAAGAGAGTGAGCAC | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_61297.1 cdna:known chromosome:030312v2:7:224856072:224859310:-1 gene:MLOC_61297 transcript:MLOC_61297.1 | 2 | 788 | 0.01 | 6 | 2 | 2 | 5' CTGACAGAAGAGAGTGAGCAC 3' ||||||||||||| |||||| 3' ACTCAACTGTCTTCTCTCTCTCGTGTCGACCT 5' |
962 | Hordeum vulgare | ATGCGACAAGTAATTCCGAAT | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_20389.2 cdna:novel chromosome:030312v2:3HS:22824816:22825946:1 gene:MLOC_20389 transcript:MLOC_20389.2 | 2 | 884 | 0.03 | 11 | 3.66667 | 3 | 5' ATGCGACAAGTAATTCCGAAT 3' ||||||| ||o|||| |o||| 3' TATGTACGCTGATCGTTAATGTTTAAGGGAGG 5' |
963 | Hordeum vulgare | TTTTGGGTCAGAGGGAGTATC | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_54045.8 cdna:novel chromosome:030312v2:7:380757072:380758954:1 gene:MLOC_54045 transcript:MLOC_54045.8 | 0 | 119 | 0 | 89 | 29.6667 | 3.5 | 5' TTTTGGGTCAGAGGGAGTATC 3' |||o||| ||||||||||| 3' TTCATAAATCCA-TCTCCCTCATATATTTTTC 5' |
964 | Hordeum vulgare | TGATTGAGCCGTGCCAATAT | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_16514.1 cdna:novel chromosome:030312v2:7:2773139:2774808:1 gene:MLOC_16514 transcript:MLOC_16514.1 | 2 | 38 | 0 | 17 | 17 | 0.5 | 5' TGATTGAGCCGTGCCAATAT 3' |||||||||||o|||||||| 3' GGCCACTAACTCGGCGCGGTTATAGAGCGCGC 5' |
965 | Hordeum vulgare | TGTTACTCCCTCCGTCCGAAA | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_14460.1 cdna:novel chromosome:030312v2:2:547147066:547152122:1 gene:MLOC_14460 transcript:MLOC_14460.1 | 2 | 2935 | 0.01 | 29 | 14.5 | 3.5 | 5' TGTTACTCCCTCCGTCCGAAA 3' ||||| || ||||o|||| || 3' TTTGACAATAAGCGAGGTAGGCCTTTTACCCT 5' |
966 | Hordeum vulgare | ATTATGGAACGGAGGGAGT | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_69582.1 cdna:novel chromosome:030312v2:2HS:406041:407531:1 gene:MLOC_69582 transcript:MLOC_69582.1 | 2 | 1378 | 0 | 10 | 10 | 2 | 5' ATTATGGAACGGAGGGAGT 3' ||| ||| ||||||||||| 3' TTAATAAAACCCTGCCTCCCTCATATTGTATC 5' |
967 | Hordeum vulgare | ATATTATGGGACGGAGGGAGG | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_13746.1 cdna:novel chromosome:030312v2:7HS:12098986:12101271:-1 gene:MLOC_13746 transcript:MLOC_13746.1 | 2 | 636 | 0 | 9 | 4.5 | 2.5 | 5' ATATTATGGGACGGAGGGAGG 3' ||||||o|||||||| |||| 3' AGAATATAATGCCCTGCCTACCTCATCTAATA 5' |
968 | Hordeum vulgare | ATACTCTCTCCGTCCCAGAAT | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_80569.1 cdna:known chromosome:030312v2:4:455650531:455651768:-1 gene:MLOC_80569 transcript:MLOC_80569.1 | 2 | 964 | 0.05 | 14 | 14 | 3.5 | 5' ATACTCTCTCCGTCCCAGAAT 3' ||| |||| |||||||||| o 3' TGAGTAT-AGAGCGGCAGGGTCTCGAGGAGCT 5' |
969 | Hordeum vulgare | TTTTGGAACGGAGGGAGTATA | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_26643.8 cdna:novel chromosome:030312v2:4:90497928:90501178:1 gene:MLOC_26643 transcript:MLOC_26643.8 | 2 | 1076 | 0.05 | 11 | 1.57143 | 3.5 | 5' TTTTGGAACGGAGGGAGTATA 3' |||o|| ||||||o|||||o 3' CATAAAAGCC-TGCCTCTCTCATGAGAGAATA 5' |
970 | Hordeum vulgare | TGACAGAAGAGAGTGAGCACA | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_52321.2 cdna:known chromosome:030312v2:3:518753339:518756802:-1 gene:MLOC_52321 transcript:MLOC_52321.2 | 0 | 690 | 0 | 84 | 21 | 1 | 5' TGACAGAAGAGAGTGAGCACA 3' ||||||||||||| ||||||| 3' ACAGACTGTCTTCTCTCTCTCGTGTCAACACC 5' |
971 | Hordeum vulgare | CTGACAGAAGAGAGTGAGCAC | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_52321.2 cdna:known chromosome:030312v2:3:518753339:518756802:-1 gene:MLOC_52321 transcript:MLOC_52321.2 | 2 | 691 | 0 | 4 | 1 | 1 | 5' CTGACAGAAGAGAGTGAGCAC 3' |||||||||||||| |||||| 3' AACAGACTGTCTTCTCTCTCTCGTGTCAACAC 5' |
972 | Hordeum vulgare | TATTATGGGACGGAGGGAGTA | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_6897.4 cdna:known chromosome:030312v2:7:547221774:547225949:1 gene:MLOC_6897 transcript:MLOC_6897.4 | 2 | 1243 | 0 | 127 | 63.5 | 2 | 5' TATTATGGGACGGAGGGAGTA 3' |||||||| |||||||| ||| 3' GTATATAATACCGTGCCTCCCCCATCAATGTT 5' |
973 | Hordeum vulgare | TATTATGGGACGGAGGGAGTA | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_58213.4 cdna:novel chromosome:030312v2:4:491585850:491587608:-1 gene:MLOC_58213 transcript:MLOC_58213.4 | 2 | 1469 | 0 | 3 | 0.75 | 1 | 5' TATTATGGGACGGAGGGAGTA 3' |||| |||||||||||||||| 3' GTTAATAAAACCCTGCCTCCCTCATGACATAT 5' |
974 | Hordeum vulgare | ATTATGGAACGGAGGGAGT | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_6897.4 cdna:known chromosome:030312v2:7:547221774:547225949:1 gene:MLOC_6897 transcript:MLOC_6897.4 | 2 | 1242 | 0.01 | 11 | 5.5 | 2 | 5' ATTATGGAACGGAGGGAGT 3' ||||||| |||||||| || 3' TATATAATACCGTGCCTCCCCCATCAATGTTT 5' |
975 | Hordeum vulgare | TATTATGGGACGGAGGGAGTA | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_72849.6 cdna:known chromosome:030312v2:5:32062940:32069184:-1 gene:MLOC_72849 transcript:MLOC_72849.6 | 2 | 870 | 0 | 9 | 1.8 | 2 | 5' TATTATGGGACGGAGGGAGTA 3' |||| |||||||||||||| | 3' GTGAATAAAACCCTGCCTCCCTCCTATACTGT 5' |
976 | Hordeum vulgare | AAGCCAAGGATGAGTTGCCTG | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_24655.1 cdna:novel chromosome:030312v2:5HL:34097857:34099120:1 gene:MLOC_24655 transcript:MLOC_24655.1 | 2 | 740 | 0.01 | 15 | 15 | 2.5 | 5' AAGCCAAGGATGAGTTGCCTG 3' |||||||o|||| ||||||| 3' TCATCTCGGTTCTTACTAAACGGACGTCCGTT 5' |
977 | Hordeum vulgare | AGGGTCATCTGTGACGGGCTC | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_55673.10 cdna:known chromosome:030312v2:2:379955737:379958978:-1 gene:MLOC_55673 transcript:MLOC_55673.10 | 2 | 1317 | 0.01 | 16 | 5.33333 | 3 | 5' AGGGTCATCTGTGACGGGCTC 3' |||o|||||||||||o| || 3' CAGGTCCTAGTAGACACTGTCGAAGAAGAGGT 5' |
978 | Hordeum vulgare | TCCCTCTGTAAAGAAATAAAA | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_56418.3 cdna:known chromosome:030312v2:4:419972008:419977821:1 gene:MLOC_56418 transcript:MLOC_56418.3 | 2 | 3209 | 0.01 | 20 | 20 | 2.5 | 5' TCCCTCTGTAAAGAAATAAAA 3' ||||||o||||||||||| | 3' CATTAGGGAGGCATTTCTTTATACTCACAAAT 5' |
979 | Hordeum vulgare | TCCCTCTGTAAACAAATATAG | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_56418.3 cdna:known chromosome:030312v2:4:419972008:419977821:1 gene:MLOC_56418 transcript:MLOC_56418.3 | 2 | 3209 | 0 | 20 | 20 | 2.5 | 5' TCCCTCTGTAAACAAATATAG 3' ||||||o||||| |||||| | 3' CATTAGGGAGGCATTTCTTTATA-CTCACAAA 5' |
980 | Hordeum vulgare | TCGGACCAGGCTTCATTCC | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_58644.2 cdna:novel chromosome:030312v2:5:32050369:32056315:-1 gene:MLOC_58644 transcript:MLOC_58644.2 | 2 | 809 | 0 | 65 | 7.22222 | 0.5 | 5' TCGGACCAGGCTTCATTCC 3' o|||||||||||||||||| 3' CTTAGGCCTGGTCCGAAGTAAGGGTAGTAAAC 5' |
981 | Hordeum vulgare | AAACATAGAGAAGTATGACTT | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_57585.6 cdna:novel chromosome:030312v2:7:568935343:568939061:-1 gene:MLOC_57585 transcript:MLOC_57585.6 | 1 | 1533 | 0 | 3 | 3 | 3.5 | 5' AAACATAGAGAAGTATGACTT 3' ||||| ||||||| | |||o| 3' TTAGTTTGTCTCTCTTCCT-CTGGACTTTAAT 5' |
982 | Hordeum vulgare | TATAGTACTCCCTCCGTCCCG | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_59190.1 cdna:novel chromosome:030312v2:4:491510721:491518872:-1 gene:MLOC_59190 transcript:MLOC_59190.1 | 2 | 2934 | 0.02 | 9 | 4.5 | 3.5 | 5' TATA-GTACTCCCTCCGTCCCG 3' |||| |||||||||||| ||o 3' TATATATCCATGAGGGAGGCTAGGTATAATTT 5' |
983 | Hordeum vulgare | TTTTGGGACGGAGTGAGTATT | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_72849.6 cdna:known chromosome:030312v2:5:32062940:32069184:-1 gene:MLOC_72849 transcript:MLOC_72849.6 | 2 | 868 | 0.05 | 18 | 3.6 | 3 | 5' TTTTGGGACGGAGTGAGTATT 3' ||||||||||||| ||| || 3' GAATAAAACCCTGCCTCCCTCCTATACTGTGG 5' |
984 | Hordeum vulgare | TTTTGGAACGGAGGGAGTACT | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_72849.6 cdna:known chromosome:030312v2:5:32062940:32069184:-1 gene:MLOC_72849 transcript:MLOC_72849.6 | 2 | 868 | 0.01 | 18 | 3.6 | 3 | 5' TTTTGGAACGGAGGGAGTACT 3' |||||| |||||||||| | | 3' GAATAAAACCCTGCCTCCCTCCT-ATACTGTG 5' |
985 | Hordeum vulgare | TTTGGGACGGAGGGAGTACTG | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_69670.1 cdna:known chromosome:030312v2:7HS:11964591:11968606:-1 gene:MLOC_69670 transcript:MLOC_69670.1 | 2 | 1636 | 0 | 8 | 4 | 2 | 5' TTTGGGACGGAGGGAGTACTG 3' |||||o|||||||||||| |o 3' AATAAAACCTTGCCTCCCTCAT-ATTATTAAA 5' |
986 | Hordeum vulgare | TATGGGACGGAGGGAGTATCT | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_69670.1 cdna:known chromosome:030312v2:7HS:11964591:11968606:-1 gene:MLOC_69670 transcript:MLOC_69670.1 | 2 | 1636 | 0.03 | 8 | 4 | 3.5 | 5' TATGGGACGGAGGGAGTATCT 3' | |||o||||||||||||| 3' AATAAAACCTTGCCTCCCTCATATTATTAAAA 5' |
987 | Hordeum vulgare | TATTATGGGACGGAGGGAGTA | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_69518.1 cdna:novel chromosome:030312v2:7:523831801:523835346:1 gene:MLOC_69518 transcript:MLOC_69518.1 | 2 | 1103 | 0 | 9 | 1.8 | 1 | 5' TATTATGGGACGGAGGGAGTA 3' |||| |||||||||||||||| 3' GTGAATAAAACCCTGCCTCCCTCATAAAGAAA 5' |
988 | Hordeum vulgare | TGATTGAGCCGTGCCAATAT | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_43989.1 cdna:novel chromosome:030312v2:6HL:11132556:11134798:1 gene:MLOC_43989 transcript:MLOC_43989.1 | 2 | 903 | 0 | 26 | 13 | 0.5 | 5' TGATTGAGCCGTGCCAATAT 3' |||||||||||o|||||||| 3' GACCACTAACTCGGCGCGGTTATAGAGTGCGC 5' |
989 | Hordeum vulgare | ATACTCCCTTCGTTCCAAAAT | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_60590.1 cdna:known chromosome:030312v2:5:438053681:438055320:-1 gene:MLOC_60590 transcript:MLOC_60590.1 | 2 | 1125 | 0.02 | 20 | 20 | 3 | 5' ATACTCCCTTCGTTCCAAAAT 3' |||| ||||| ||| |||||| 3' ATCGTATGTGGGAA-CAACGTTTTAGTGTAAT 5' |
990 | Hordeum vulgare | TTTTGGGACGGAGTGAGTATT | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_69518.1 cdna:novel chromosome:030312v2:7:523831801:523835346:1 gene:MLOC_69518 transcript:MLOC_69518.1 | 2 | 1101 | 0 | 18 | 3.6 | 1 | 5' TTTTGGGACGGAGTGAGTATT 3' ||||||||||||| ||||||| 3' GAATAAAACCCTGCCTCCCTCATAAAGAAAAG 5' |
991 | Hordeum vulgare | TTTTGGGACGGAGTGAGTATT | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_66594.2 cdna:novel chromosome:030312v2:6:167557563:167563549:-1 gene:MLOC_66594 transcript:MLOC_66594.2 | 2 | 287 | 0 | 18 | 3.6 | 2 | 5' TTTTGGGACGGAGTGAGTATT 3' ||||||||||||| ||||| | 3' GAATAAAACCCTGCCTCCCTCATCAAACGTTG 5' |
992 | Hordeum vulgare | TATAGTACTCCCTCCGTCCCG | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_6070.4 cdna:known chromosome:030312v2:6HS:2185538:2188313:1 gene:MLOC_6070 transcript:MLOC_6070.4 | 2 | 1681 | 0.01 | 3 | 3 | 3.5 | 5' TATAGTACTCCCTCCGTCCCG 3' ||| |||||||||||| ||o 3' CGTTTTATGATGAGGGAGGCAAGGTTTTNNNN 5' |
993 | Hordeum vulgare | TTTTGGGACGGAGTGAGTATT | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_40346.1 cdna:novel chromosome:030312v2:7HS:34897922:34898994:-1 gene:MLOC_40346 transcript:MLOC_40346.1 | 2 | 191 | 0.01 | 3 | 1.5 | 3 | 5' TTTTGGGACGGAGTGAGTATT 3' ||||||||||||| o||||o 3' GAATAAAACCCTGCCTCCTTCATGTCATATTA 5' |
994 | Hordeum vulgare | TTTTGGGACGGAGGGAGTAAC | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_40346.1 cdna:novel chromosome:030312v2:7HS:34897922:34898994:-1 gene:MLOC_40346 transcript:MLOC_40346.1 | 2 | 191 | 0 | 3 | 1.5 | 1.5 | 5' TTTTGGGACGGAGGGAGTAAC 3' ||||||||||||||o|||| | 3' GAATAAAACCCTGCCTCCTTCAT-GTCATATT 5' |
995 | Hordeum vulgare | TGACAGAAGAGAGTGAGCACA | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_13032.1 cdna:novel contig:220312v1:morex_contig_1564635:477:3263:1 gene:MLOC_13032 transcript:MLOC_13032.1 | 2 | 750 | 0.03 | 5 | 5 | 3 | 5' TGACAGAAGAGAGTGAGCACA 3' ||||||||||||| ||||| 3' ACGTACTGTCTTCTCTCCCTCGTACGAATCCA 5' |
996 | Hordeum vulgare | TTATTTTGGGACGGAGGGAGT | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_10723.3 cdna:novel chromosome:030312v2:2:605996561:605997943:-1 gene:MLOC_10723 transcript:MLOC_10723.3 | 1 | 911 | 0 | 10 | 10 | 0 | 5' TTATTTTGGGACGGAGGGAGT 3' ||||||||||||||||||||| 3' AGTGAATAAAACCCTGCCTCCCTCATATAATC 5' |
997 | Hordeum vulgare | TTTGGATTGAAGGGAGCTCTG | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_71332.1 cdna:novel chromosome:030312v2:3:466323274:466326190:-1 gene:MLOC_71332 transcript:MLOC_71332.1 | 2 | 869 | 0.01 | 64 | 32 | 2.5 | 5' TTTGGATTGAAGGGAGCTCTG 3' o||||| ||||||||||||oo 3' CATAGAACCTCACTTCCCTCGAGGTAGAAGTT 5' |
998 | Hordeum vulgare | TGCAGTTGTTGCCTCATGCTT | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_16182.1 cdna:novel chromosome:030312v2:7HL:17469123:17471345:-1 gene:MLOC_16182 transcript:MLOC_16182.1 | 0 | 1441 | 0 | 24 | 24 | 2.5 | 5' TGCAGTTGTTGCCTCATGCTT 3' |||||o||o||||||| |||o 3' GTATACGTCGACGACGGAGTTCGAGAGTGAGG 5' |
999 | Hordeum vulgare | TGCAGTTGCTGTCTCAAGCTT | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_36835.2 cdna:known chromosome:030312v2:3HL:7674503:7678074:1 gene:MLOC_36835 transcript:MLOC_36835.2 | 0 | 644 | 0.02 | 10 | 5 | 3.5 | 5' TGCAGTTGCTGTCTCAAGCTT 3' |||||||||||o|o||| |o 3' TCTTACGTCAACGACGGGGTTAGGTCGACTAG 5' |
1000 | Hordeum vulgare | TATTATGGGACGGAGGGAGTA | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_14970.2 cdna:novel chromosome:030312v2:6HL:8061294:8064196:1 gene:MLOC_14970 transcript:MLOC_14970.2 | 2 | 1597 | 0 | 11 | 11 | 2.5 | 5' TATTATGGGACGGAGGGAGTA 3' |||| ||o|||oo|||||||| 3' GTAAATAAAACTCTGTTTCCCTCATGTACTGT 5' |
1001 | Hordeum vulgare | TTTGGGACGGAGGGAGTACTG | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_22135.1 cdna:novel chromosome:030312v2:5:525347519:525349048:-1 gene:MLOC_22135 transcript:MLOC_22135.1 | 2 | 1407 | 0.03 | 8 | 4 | 3 | 5' TTTGGGACGGAGGGAGTACTG 3' |||||o||||||o|||o| |o 3' AATAAAACCTTGCCTCTCTCGTCATGTAATAT 5' |
1002 | Hordeum vulgare | TTTTGGGACGGAGGGAGTAT | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_76689.9 cdna:novel chromosome:030312v2:6:484423834:484425583:-1 gene:MLOC_76689 transcript:MLOC_76689.9 | 2 | 1497 | 0 | 3 | 1.5 | 2.5 | 5' TTTTGGGACGGAGGGAGTAT 3' ||| ||o|||o||||||||o 3' TTATAAATCCTTGCTTCCCTCATGATTGATGG 5' |
1003 | Hordeum vulgare | TTTTGGGACGGAGGGAGTAAC | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_76689.9 cdna:novel chromosome:030312v2:6:484423834:484425583:-1 gene:MLOC_76689 transcript:MLOC_76689.9 | 2 | 1497 | 0.01 | 3 | 1.5 | 3 | 5' TTTTGGGACGGAGGGAGTAAC 3' ||| ||o|||o|||||||| | 3' TTATAAATCCTTGCTTCCCTCAT-GATTGATG 5' |
1004 | Hordeum vulgare | TTATTTTGGGACGGAGGGAGT | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_20818.1 cdna:known chromosome:030312v2:7:322531768:322533960:1 gene:MLOC_20818 transcript:MLOC_20818.1 | 2 | 104 | 0 | 18 | 18 | 0 | 5' TTATTTTGGGACGGAGGGAGT 3' ||||||||||||||||||||| 3' TGTGAATAAAACCCTGCCTCCCTCATCATAAT 5' |
1005 | Hordeum vulgare | TTTTGGGACGGAGTGAGTATT | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_72495.1 cdna:known chromosome:030312v2:3:542235938:542240994:1 gene:MLOC_72495 transcript:MLOC_72495.1 | 2 | 1798 | 0 | 16 | 16 | 2 | 5' TTTTGGGACGGAGTGAGTATT 3' ||||o|||||||| |||||o| 3' CAATAAAATCCTGCCTCCCTCATGATGCTTTC 5' |
1006 | Hordeum vulgare | TTTTGGGACGGAGGGAGTAAC | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_72495.1 cdna:known chromosome:030312v2:3:542235938:542240994:1 gene:MLOC_72495 transcript:MLOC_72495.1 | 2 | 1798 | 0 | 16 | 16 | 1.5 | 5' TTTTGGGACGGAGGGAGTAAC 3' ||||o|||||||||||||| | 3' CAATAAAATCCTGCCTCCCTCAT-GATGCTTT 5' |
1007 | Hordeum vulgare | TTTAGGAACGGAGTGAGTAGT | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_72495.1 cdna:known chromosome:030312v2:3:542235938:542240994:1 gene:MLOC_72495 transcript:MLOC_72495.1 | 2 | 1798 | 0.03 | 16 | 16 | 3 | 5' TTTAGGAACGGAGTGAGTAGT 3' |||||| |||||| ||||| | 3' AATAAAATCC-TGCCTCCCTCATGATGCTTTC 5' |
1008 | Hordeum vulgare | TTTGGGACGGAGGGAGTACTG | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_13576.3 cdna:novel chromosome:030312v2:2:432768357:432771331:1 gene:MLOC_13576 transcript:MLOC_13576.3 | 2 | 2284 | 0.05 | 61 | 7.625 | 3.5 | 5' TTTGGGACGGAGGGAGTACTG 3' || ||o||||| |||||| || 3' TATAAATCCTTGCCTACCTCAT-ACTCAGATG 5' |
1009 | Hordeum vulgare | TTTGGGACGGAGGGAGTACTG | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_53358.5 cdna:known chromosome:030312v2:1:271628792:271630780:-1 gene:MLOC_53358 transcript:MLOC_53358.5 | 2 | 1782 | 0 | 61 | 7.625 | 2.5 | 5' TTTGGGACGGAGGGAGTA-CTG 3' || ||o|||||||||||| ||| 3' TATAAATCCTTGCCTCCCTCATAGACTATCCT 5' |
1010 | Hordeum vulgare | TATGGGACGGAGGGAGTATCT | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_53358.5 cdna:known chromosome:030312v2:1:271628792:271630780:-1 gene:MLOC_53358 transcript:MLOC_53358.5 | 2 | 1782 | 0 | 61 | 7.625 | 1.5 | 5' TATGGGACGGAGGGAGTATCT 3' || ||o||||||||||||||| 3' ATAAAT-CCTTGCCTCCCTCATAGACTATCCT 5' |
1011 | Hordeum vulgare | TTATTTTGGGACGGAGGGAGT | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_34489.5 cdna:novel chromosome:030312v2:1H:14966757:14969573:1 gene:MLOC_34489 transcript:MLOC_34489.5 | 2 | 2758 | 0 | 11 | 5.5 | 2.5 | 5' TTATTTTGGGACGGAGGGAGT 3' |o|||o|||||| ||o||||| 3' AGTGAGTAAGACCCTGACTTCCTCATGTTTTA 5' |
1012 | Hordeum vulgare | TATTATGGGACGGAGGGAGTA | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_52671.1 cdna:known chromosome:030312v2:4:473729757:473733382:-1 gene:MLOC_52671 transcript:MLOC_52671.1 | 2 | 1294 | 0.01 | 18 | 18 | 3 | 5' TATTATGGGACGGAGGGAGTA 3' |||| |||o||| |o|||||| 3' GTTCATAAAACCTTGCGTTCCTCATATATCTT 5' |
1013 | Hordeum vulgare | TTTGGGACGGAGGGAGTACTG | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_37946.5 cdna:novel chromosome:030312v2:5:188989229:188992900:1 gene:MLOC_37946 transcript:MLOC_37946.5 | 2 | 188 | 0.01 | 8 | 2 | 2.5 | 5' TTTGGGACGGAGGGAGTACTG 3' ||||||||o||||||||| | 3' AATAAAACCCTGTCTCCCTCATAAACAGATCA 5' |
1014 | Hordeum vulgare | TGTACTCCCTCCGTTCCTAAA | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_67470.1 cdna:known chromosome:030312v2:2:576417261:576422103:-1 gene:MLOC_67470 transcript:MLOC_67470.1 | 2 | 1986 | 0.01 | 18 | 18 | 3 | 5' TGTACTCCCTCCGTTCCTAAA 3' |||||||||||| |||||| 3' AAGATGATGAGGGAGGCA-GGATTTTATTCNN 5' |
1015 | Hordeum vulgare | TATACTCCCTCCGTCCGAAAT | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_67470.1 cdna:known chromosome:030312v2:2:576417261:576422103:-1 gene:MLOC_67470 transcript:MLOC_67470.1 | 2 | 1986 | 0.01 | 18 | 18 | 3 | 5' TA-TACTCCCTCCGTCCGAAAT 3' || |||||||||||||| ||| 3' AAGATGATGAGGGAGGCAGGATTTTATTCNNN 5' |
1016 | Hordeum vulgare | TTTGGGACGGAGGGAGTACTG | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_78409.3 cdna:novel chromosome:030312v2:5:560101869:560105791:1 gene:MLOC_78409 transcript:MLOC_78409.3 | 2 | 2464 | 0 | 8 | 2 | 2 | 5' TTTGGGACGGAGGGAGTACTG 3' ||||||||o||||||||| |o 3' AATAAAACCCTGTCTCCCTCATCATTATTTAT 5' |
1017 | Hordeum vulgare | CTCCGTTCCTAAATATAAGTT | alignment | plot | GSE38755_PARE-unique.norm.11-15_DPA | MLOC_72099.7 cdna:novel chromosome:030312v2:5:545657294:545660369:1 gene:MLOC_72099 transcript:MLOC_72099.7 | 2 | 116 | 0.01 | 3 | 1.5 | 2.5 | 5' CTCCGTTCCTAAATATA-AGTT 3' ||||||||||||||||| |o | 3' GAGGGAGGCAAGGATTTATATATTCAAATAGC 5' |
1018 | Hordeum vulgare | CTTATATTATGGGACGGAGGG | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_5727.1 cdna:novel chromosome:030312v2:1:440381374:440383150:-1 gene:MLOC_5727 transcript:MLOC_5727.1 | 0 | 991 | 0 | 5 | 5 | 0 | 5' CTTATATTATGGGACGGAGGG 3' ||||||||||||||||||||| 3' GCAAGAATATAATACCCTGCCTCCCTCATAAA 5' |
1019 | Hordeum vulgare | TATGGGACGGAGGGAGTATCT | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_78266.1 cdna:novel chromosome:030312v2:3HL:8993115:8994352:-1 gene:MLOC_78266 transcript:MLOC_78266.1 | 2 | 1206 | 0.05 | 9 | 4.5 | 3.5 | 5' TATGGGACGGAGGGAGTATCT 3' || ||o||||||| ||||| | 3' ATAAAT-CCTTGCCTCCATCATATAAAAACGT 5' |
1020 | Hordeum vulgare | TATACTCCCTCCGTCCGAAAT | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_26643.6 cdna:novel chromosome:030312v2:4:90497913:90501180:1 gene:MLOC_26643 transcript:MLOC_26643.6 | 2 | 1214 | 0.01 | 13 | 1.85714 | 3 | 5' TATACTCCCTCCGTCCGAAAT 3' o||||||||| |o|||| ||| 3' TGATGTATGAGGGAAGTAGGCCTTAATGAACA 5' |
1021 | Hordeum vulgare | TATAGTACTCCCTCCGTCCGG | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_26643.6 cdna:novel chromosome:030312v2:4:90497913:90501180:1 gene:MLOC_26643 transcript:MLOC_26643.6 | 2 | 1217 | 0.01 | 21 | 3 | 3 | 5' TATAGTACTCCCTCCGTCCGG 3' ||o| |||||||| |o||||| 3' TATGATGT-ATGAGGGAAGTAGGCCTTAATGA 5' |
1022 | Hordeum vulgare | TTTGGCACCTTGAAACTGGGA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_57965.4 cdna:novel chromosome:030312v2:2:568452460:568455916:-1 gene:MLOC_57965 transcript:MLOC_57965.4 | 0 | 910 | 0 | 22 | 3.66667 | 3 | 5' TTTGGCACCTTGAAACTGGGA 3' |o||o|| |||||| |||||| 3' AAGAAGACTGTTGAACTTCGACCCTTTCTTAT 5' |
1023 | Hordeum vulgare | TTTGGGACGGAGGGAGTACTG | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_26643.6 cdna:novel chromosome:030312v2:4:90497913:90501180:1 gene:MLOC_26643 transcript:MLOC_26643.6 | 2 | 1113 | 0 | 20 | 2.85714 | 2.5 | 5' TTTGGGACGGAGGGAGTACTG 3' ||| ||||||||o||||||| 3' CATAAAAGCCTGCCTCTCTCATGAGAGAATAG 5' |
1024 | Hordeum vulgare | CTCCGTTCCTAAATATAAGTT | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_52639.4 cdna:novel chromosome:030312v2:7:533269741:533273012:1 gene:MLOC_52639 transcript:MLOC_52639.4 | 2 | 1365 | 0 | 4 | 1 | 2.5 | 5' CTCCGTTCCTAAATATAAGTT 3' |||||||||||||||o ||| 3' GAGGGAGGCAAGGATTTATGAACAACAACCCC 5' |
1025 | Hordeum vulgare | TATTATGGGACGGAGGGAGTA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_48886.1 cdna:novel contig:220312v1:morex_contig_331488:20:2271:1 gene:MLOC_48886 transcript:MLOC_48886.1 | 2 | 112 | 0 | 5 | 5 | 2 | 5' TATTATGGGACGGAGGGAGTA 3' |||| ||||| |||||||||| 3' GTGAATAAAACCCTACCTCCCTCATGTTTTAT 5' |
1026 | Hordeum vulgare | TGCAGTTGCTGCCTCAAGCTT | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_22069.3 cdna:novel chromosome:030312v2:3HL:6136111:6138507:1 gene:MLOC_22069 transcript:MLOC_22069.3 | 2 | 783 | 0.02 | 12 | 1.71429 | 2.5 | 5' TGCAGTTGCTGCCTCAAGCTT 3' oo|||||||||||||| |||o 3' AAAGGTGTCAACGACGGAGT-CGAGTACTTCT 5' |
1027 | Hordeum vulgare | TGTACTCCCTCCGTTCCTAAA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_63462.2 cdna:known chromosome:030312v2:2:53816820:53821954:1 gene:MLOC_63462 transcript:MLOC_63462.2 | 2 | 1825 | 0.02 | 10 | 5 | 3 | 5' TGTACTCCCTCCGTTCCTAAA 3' | ||||||||||o|o|| ||| 3' TAATAGATGAGGGAGGTAGGGTTTTATTCACA 5' |
1028 | Hordeum vulgare | TCCACAGGCTTTCTTGAACTG | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_67201.1 cdna:known chromosome:030312v2:4:31377429:31381415:-1 gene:MLOC_67201 transcript:MLOC_67201.1 | 1 | 722 | 0 | 97 | 32.3333 | 2 | 5' TCCACAGGCTTTCTTGAACTG 3' |||||| |||||||||||| | 3' CGGAAGGTGTACGAAAGAACTTG-CTACCGCA 5' |
1029 | Hordeum vulgare | TCGGACCAGGCTTCATTCC | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_79063.2 cdna:novel chromosome:030312v2:3:89144249:89147977:-1 gene:MLOC_79063 transcript:MLOC_79063.2 | 0 | 146 | 0 | 152 | 16.8889 | 1 | 5' TCGGACCAGGCTTCATTCC 3' o|||||||||||||||o|| 3' CTTAGGCCTGGTCCGAAGTAGGGTCCGTAAAC 5' |
1030 | Hordeum vulgare | TCGGACCAGGCTTCATTCCC | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_79063.2 cdna:novel chromosome:030312v2:3:89144249:89147977:-1 gene:MLOC_79063 transcript:MLOC_79063.2 | 0 | 146 | 0 | 152 | 16.8889 | 1.5 | 5' TCGGACCAGGCTTCATTCCC 3' o||||||||||||||| ||| 3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAAA 5' |
1031 | Hordeum vulgare | AGTACTTCCTCCGTCCCAAAA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_10600.5 cdna:novel chromosome:030312v2:6:354028574:354033288:-1 gene:MLOC_10600 transcript:MLOC_10600.5 | 2 | 1613 | 0.01 | 10 | 5 | 3 | 5' AGTACTTCCTCCGTCCCAAAA 3' | ||||||||| || |||||| 3' TTAGT-ATGAAGGAGACATGGTTTTATTAACA 5' |
1032 | Hordeum vulgare | AATACTTCCTCCGTCCCAAAA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_10600.5 cdna:novel chromosome:030312v2:6:354028574:354033288:-1 gene:MLOC_10600 transcript:MLOC_10600.5 | 2 | 1613 | 0.01 | 10 | 5 | 3 | 5' AATACTTCCTCCGTCCCAAAA 3' |||||||||| || |||||| 3' CTTAGTATGAAGGAGACATGGTTTTATTAACA 5' |
1033 | Hordeum vulgare | TGACAGAAGAGAGTGAGCACA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_11199.7 cdna:known chromosome:030312v2:6HS:3424827:3430372:-1 gene:MLOC_11199 transcript:MLOC_11199.7 | 0 | 2791 | 0 | 52 | 7.42857 | 3 | 5' TGACAGAAGAGAGTGAGCACA 3' ||||||||||||| ||||| 3' ACGAACTGTCTTCTCTCTCTCGTACGACTTCT 5' |
1034 | Hordeum vulgare | TACTACTCCCTCTGTCCCAAA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_56030.2 cdna:novel chromosome:030312v2:5:532041610:532045691:1 gene:MLOC_56030 transcript:MLOC_56030.2 | 2 | 2656 | 0.05 | 11 | 2.75 | 3 | 5' TACTACTCCCTCTGTCCCAAA 3' o|||||||||o|||| || || 3' TCAAGTGATGAGGGGGACAAGGATTTATGAAC 5' |
1035 | Hordeum vulgare | TTTTGGGACGGAGGGAGTAT | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_78266.1 cdna:novel chromosome:030312v2:3HL:8993115:8994352:-1 gene:MLOC_78266 transcript:MLOC_78266.1 | 2 | 1207 | 0.03 | 5 | 5 | 2.5 | 5' TTTTGGGACGGAGGGAGTAT 3' ||| ||o||||||| ||||| 3' ACATAAATCCTTGCCTCCATCATATAAAAACG 5' |
1036 | Hordeum vulgare | TTTTGGAACGGAGGGAGTACT | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_78266.1 cdna:novel chromosome:030312v2:3HL:8993115:8994352:-1 gene:MLOC_78266 transcript:MLOC_78266.1 | 2 | 1207 | 0.03 | 5 | 5 | 3 | 5' TTTTGGAACGGAGGGAGTACT 3' ||| |||||||||| |||| | 3' ACATAAATCCTTGCCTCCATCAT-ATAAAAAC 5' |
1037 | Hordeum vulgare | TTTGGATTGAAGGGAGCTCTG | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_4149.1 cdna:novel chromosome:030312v2:7:96045484:96047844:-1 gene:MLOC_4149 transcript:MLOC_4149.1 | 0 | 734 | 0 | 9 | 1.8 | 3.5 | 5' TTTGGATTGAAGGGAGCTCTG 3' |||| |o|o||||||o|| || 3' TAAGAAACGTGATTTCCCTTGA-ACGAAGCAT 5' |
1038 | Hordeum vulgare | TTTTGGGACGGAGTGAGTATT | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_26643.6 cdna:novel chromosome:030312v2:4:90497913:90501180:1 gene:MLOC_26643 transcript:MLOC_26643.6 | 2 | 1114 | 0.01 | 13 | 1.85714 | 2.5 | 5' TTTTGGGACGGAGTGAGTATT 3' |||| |||||||| |||||o| 3' TCATAAAAGCCTGCCTCTCTCATGAGAGAATA 5' |
1039 | Hordeum vulgare | TTTTGGGACGGAGGGAGTAAC | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_26643.6 cdna:novel chromosome:030312v2:4:90497913:90501180:1 gene:MLOC_26643 transcript:MLOC_26643.6 | 2 | 1114 | 0 | 13 | 1.85714 | 2.5 | 5' TTTTGGGACGGAGGGAGTAAC 3' |||| ||||||||o||||| | 3' TCATAAAAGCCTGCCTCTCTCAT-GAGAGAAT 5' |
1040 | Hordeum vulgare | TTTTGGAACGGAGGGAGTA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_26643.6 cdna:novel chromosome:030312v2:4:90497913:90501180:1 gene:MLOC_26643 transcript:MLOC_26643.6 | 2 | 1114 | 0 | 13 | 1.85714 | 2 | 5' TTTTGGAACGGAGGGAGTA 3' |||o|| ||||||o||||| 3' CATAAAAGCC-TGCCTCTCTCATGAGAGAATA 5' |
1041 | Hordeum vulgare | TCCACAGGCTTTCTTGAACTG | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_64055.3 cdna:novel chromosome:030312v2:7HS:3568107:3569803:-1 gene:MLOC_64055 transcript:MLOC_64055.3 | 0 | 831 | 0 | 259 | 64.75 | 1 | 5' TCCACAGGCTTTCTTGAACTG 3' ||||||||||||||||||| | 3' ACCAAGGTGTCCGAAAGAACTTGCCAAGAACG 5' |
1042 | Hordeum vulgare | TATTTCTTTACAGAGGGAGTA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_81382.2 cdna:novel chromosome:030312v2:6:112757030:112764870:-1 gene:MLOC_81382 transcript:MLOC_81382.2 | 0 | 679 | 0 | 36 | 36 | 3.5 | 5' TATTTCTTTACA-GAGGGAGTA 3' ||o|||o|o||| ||||o||o| 3' ACAGATGAAGGAGTGTTCTCCTTCGTTCATTT 5' |
1043 | Hordeum vulgare | ACTCCCTCCGTCCTAAAATGT | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_52900.2 cdna:novel chromosome:030312v2:3HS:1323545:1325511:1 gene:MLOC_52900 transcript:MLOC_52900.2 | 2 | 1426 | 0.02 | 12 | 6 | 3 | 5' ACTCCCTCCGTCCTAAAATGT 3' ||| ||||||| |o|||||o| 3' TGACTGATGGAGGCATGGTTTTATATTCAGCA 5' |
1044 | Hordeum vulgare | AAGCCAAGGATGAGTTGCCTG | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_67781.5 cdna:known chromosome:030312v2:2HS:6286392:6289320:-1 gene:MLOC_67781 transcript:MLOC_67781.5 | 2 | 993 | 0.01 | 23 | 4.6 | 2.5 | 5' AAGCCAAGGATGAGTTGCCTG 3' |||||||||||||o||||| 3' AGTATTCGGTTCCTACTTAACGGTGGCCGCGG 5' |
1045 | Hordeum vulgare | AAGCCAAGGATGAGTTGCCTG | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_62730.2 cdna:known chromosome:030312v2:4:501096251:501099501:1 gene:MLOC_62730 transcript:MLOC_62730.2 | 0 | 1014 | 0 | 225 | 75 | 2 | 5' AAGCCAAGGATGAGTTGCCTG 3' ||||||||||||| ||||| | 3' TGTATTCGGTTCCTACTAAACGGTCCCCCGTT 5' |
1046 | Hordeum vulgare | TTTGGGACGGAGGGAGTACTG | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_52823.1 cdna:novel chromosome:030312v2:3:333972822:333974303:-1 gene:MLOC_52823 transcript:MLOC_52823.1 | 2 | 870 | 0.05 | 9 | 9 | 3 | 5' TTTGGGACGGAGGGAGTACTG 3' ||||||||o| |o|||| ||| 3' AGTTAAACCCTGTCCCTCTCA-GACTACCACT 5' |
1047 | Hordeum vulgare | CTGACAGAAGAGAGTGAGCAC | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_11199.1 cdna:known chromosome:030312v2:6HS:3424576:3430071:-1 gene:MLOC_11199 transcript:MLOC_11199.1 | 2 | 2682 | 0.04 | 29 | 4.14286 | 3 | 5' CTGACAGAAGAGAGTGAGCAC 3' ||||||||||||| ||||| 3' AACGAACTGTCTTCTCTCTCTCGTACGACTTC 5' |
1048 | Hordeum vulgare | TTACTCCCTCCGTCCTAAAAT | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_58351.3 cdna:novel chromosome:030312v2:5:550929856:550930292:1 gene:MLOC_58351 transcript:MLOC_58351.3 | 2 | 240 | 0 | 5 | 2.5 | 1.5 | 5' TTACTCCCTCCGTCCTAAAAT 3' o||||||||||o|||o||||| 3' GGTTGATGAGGGAGGTAGGGTTTTATATTCTC 5' |
1049 | Hordeum vulgare | GTATTCCCTCCGTCCCAAATA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_58351.3 cdna:novel chromosome:030312v2:5:550929856:550930292:1 gene:MLOC_58351 transcript:MLOC_58351.3 | 2 | 240 | 0.01 | 5 | 2.5 | 3 | 5' GTATTCCCTCCGTCCCAAATA 3' ||o|||||||o||||||| | 3' GGTTGATGAGGGAGGTAGGGTTT-TATATTCT 5' |
1050 | Hordeum vulgare | TGTACTCCCTCCGTTCCTAAA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_17833.1 cdna:novel chromosome:030312v2:5:530617343:530619382:1 gene:MLOC_17833 transcript:MLOC_17833.1 | 2 | 1227 | 0.02 | 7 | 3.5 | 3 | 5' TGTACTCCCTCCGTTCCTAAA 3' |||||| | |||||||| ||| 3' TTGTACATGATGAAGGCAAGGTTTTATATACT 5' |
1051 | Hordeum vulgare | TTTGGGACGGAGGGAGTACTG | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_71605.1 cdna:novel chromosome:030312v2:6:536383101:536385272:-1 gene:MLOC_71605 transcript:MLOC_71605.1 | 0 | 1926 | 0.03 | 9 | 1.125 | 4 | 5' TTTGGG-ACGGAGGGAGTACTG 3' |||o|| ||o|||||||||| 3' CATAAATCCATGTCTCCCTCATGTATCATACT 5' |
1052 | Hordeum vulgare | TAGTTCTTTACAGAGGGAGTA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_24214.1 cdna:novel chromosome:030312v2:6HS:10897770:10898254:-1 gene:MLOC_24214 transcript:MLOC_24214.1 | 2 | 204 | 0.01 | 31 | 31 | 3 | 5' TAGTTCTTTACAGAGGGAGTA 3' o|o||| |||||||||| ||| 3' TCGTGTTAAG-AATGTCTCCCACATTGTAGCA 5' |
1053 | Hordeum vulgare | TCGCTTGGTGCAGATCGGGAC | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_12447.3 cdna:novel chromosome:030312v2:7:8067698:8073409:1 gene:MLOC_12447 transcript:MLOC_12447.3 | 2 | 249 | 0.03 | 50 | 10 | 3 | 5' TCGCTTGGTGCAGATCGGGAC 3' | ||||||||||| |||||| 3' GACCA-CGAACCACGTCGAGCCCTTGACAAGA 5' |
1054 | Hordeum vulgare | TTTGGATTGAAGGGAGCTCTG | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_4149.4 cdna:novel chromosome:030312v2:7:96045515:96048098:-1 gene:MLOC_4149 transcript:MLOC_4149.4 | 0 | 879 | 0.02 | 9 | 1.8 | 3.5 | 5' TTTGGATTGAAGGGAGCTCTG 3' |||| |o|o||||||o|| || 3' TAAGAAACGTGATTTCCCTTGA-ACGAAGCAT 5' |
1055 | Hordeum vulgare | AAGCCAAGGATGAGTTGCCTG | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_76757.4 cdna:known chromosome:030312v2:5:17021024:17025606:1 gene:MLOC_76757 transcript:MLOC_76757.4 | 2 | 1653 | 0.04 | 31 | 5.16667 | 3 | 5' AAGCCAAGGATGAGTTGCCTG 3' |||||||o||||o|||||oo 3' GGTACTCGGTTCTTACTTAACGGGTGCCTGTC 5' |
1056 | Hordeum vulgare | TATTATGGGACGGAGGGAGTA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_9817.2 cdna:known chromosome:030312v2:3:28801378:28804417:1 gene:MLOC_9817 transcript:MLOC_9817.2 | 2 | 467 | 0.05 | 10 | 2.5 | 3.5 | 5' TATTATGGGACGGAGGGAGTA 3' ||| ||||| |||||o|||| 3' GTTCTTAAAACCCTACCTCCTTCATACACAGA 5' |
1057 | Hordeum vulgare | CTTCCGTCCCAAAATAAGTGA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_52653.1 cdna:known chromosome:030312v2:7HS:3583589:3589465:-1 gene:MLOC_52653 transcript:MLOC_52653.1 | 2 | 1192 | 0 | 7 | 7 | 1.5 | 5' CTTCCGTCCCAAAATAAGTGA 3' |o||||| ||||||||||||| 3' TGAGGGAGGCAAGGTTTTATTCACTGAGTTCG 5' |
1058 | Hordeum vulgare | AAGCCAAGGATGAGTTGCCTG | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_36554.1 cdna:known chromosome:030312v2:6:504853210:504857063:-1 gene:MLOC_36554 transcript:MLOC_36554.1 | 0 | 957 | 0 | 117 | 117 | 0 | 5' AAGCCAAGGATGAGTTGCCTG 3' ||||||||||||||||||||| 3' TTATTTCGGTTCCTACTCAACGGACTAGTAGT 5' |
1059 | Hordeum vulgare | TATTATGGGACGGAGGGAGTA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_51067.6 cdna:novel chromosome:030312v2:7HL:926384:935090:1 gene:MLOC_51067 transcript:MLOC_51067.6 | 2 | 2915 | 0 | 10 | 2.5 | 2 | 5' TATTATGGGACGGAGGGAGTA 3' ||| |||||||||||||||| 3' GTTCTTAAAACCCTGCCTCCCTCATGATTTTA 5' |
1060 | Hordeum vulgare | TATTTCTTTACGGAGGGAGTA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_5129.1 cdna:known chromosome:030312v2:2:364176576:364178273:-1 gene:MLOC_5129 transcript:MLOC_5129.1 | 0 | 408 | 0 | 1335 | 1335 | 4 | 5' TATTTCTTTACGGAGGGAGTA 3' ||o|||o|o| || ||o|||| 3' TCGTATGAAGGAGTACC-CCTTCATGAAGAGT 5' |
1061 | Hordeum vulgare | TATTATGGGACGGAGGGAGTA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_57414.3 cdna:known chromosome:030312v2:4:530999410:531002030:-1 gene:MLOC_57414 transcript:MLOC_57414.3 | 2 | 1265 | 0.02 | 5 | 1.66667 | 3 | 5' TATTATGGGACGGAGGGAGTA 3' |||| |||o||o| ||||||| 3' GTAAATAAAACCTTGTCCCCCTCATCATCTCC 5' |
1062 | Hordeum vulgare | TCCTAAATACTTGTTGTTGGG | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_53290.1 cdna:novel chromosome:030312v2:6HS:4882335:4885498:1 gene:MLOC_53290 transcript:MLOC_53290.1 | 2 | 1085 | 0 | 22 | 3.14286 | 0 | 5' TCCTAAATACTTGTTGTTGGG 3' ||||||||||||||||||||| 3' GACAAGGATTTATGAACAACAACCCTTCTTGA 5' |
1063 | Hordeum vulgare | ACATTATGGGACGGAGGGAGT | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_4643.4 cdna:known chromosome:030312v2:2:411917930:411924478:-1 gene:MLOC_4643 transcript:MLOC_4643.4 | 2 | 3231 | 0 | 8 | 2 | 3 | 5' ACATTATGGGACGGAGGGAGT 3' || |o|||||| |||o||||| 3' CGTGTG-AGTACCCTACCTTCCTCATAAACTA 5' |
1064 | Hordeum vulgare | ACTCCCTCCATCCCATAATAT | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_44548.1 cdna:novel chromosome:030312v2:1:108823500:108826797:-1 gene:MLOC_44548 transcript:MLOC_44548.1 | 2 | 2046 | 0 | 7 | 3.5 | 1 | 5' ACTCCCTCCATCCCATAATAT 3' ||||||||||||| ||||||| 3' TTGATGAGGGAGGTAGG-TATTATATTCTCGC 5' |
1065 | Hordeum vulgare | ATATTATGGGACGGAGGGAGG | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_56507.1 cdna:novel chromosome:030312v2:2:24894587:24898152:1 gene:MLOC_56507 transcript:MLOC_56507.1 | 0 | 1144 | 0.01 | 10 | 2 | 3 | 5' ATATTATGGGACGGAGGGAGG 3' |o||||||||| |o|||||| 3' AGAATGTAATACCCTCCTTCCCTCATTCTTAA 5' |
1066 | Hordeum vulgare | TATTATGGGACGGAGGGAGTA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_65523.4 cdna:novel chromosome:030312v2:7HL:6851059:6852521:1 gene:MLOC_65523 transcript:MLOC_65523.4 | 2 | 1286 | 0 | 5 | 2.5 | 2 | 5' TATTATGGGACGGAGGGAGTA 3' |||| |o|||||||o|||||| 3' GTAAATAAAATCCTGCCTTCCTCATAAGTGTT 5' |
1067 | Hordeum vulgare | TATTTGCAGGTTTTAGGTCTAA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_70446.3 cdna:novel chromosome:030312v2:7:2801779:2804764:1 gene:MLOC_70446 transcript:MLOC_70446.3 | 2 | 1363 | 0 | 14 | 1.75 | 2.5 | 5' TATTTGCAGGTTTTAGGTCTAA 3' o||||||||||||||o|||o| 3' TTTTGTAAACGTCCAAAATTCAGGTCTACCTT 5' |
1068 | Hordeum vulgare | TTATTTTGGGACGGAGGGAGT | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_58552.5 cdna:novel chromosome:030312v2:2:475555959:475559690:-1 gene:MLOC_58552 transcript:MLOC_58552.5 | 0 | 467 | 0.02 | 10 | 2 | 4 | 5' TTATTTTGGGACGGAGGGAGT 3' o||| ||||||o| |||||| 3' AGAATGTAATACCCTGTCGCCCTCATTAAAGA 5' |
1069 | Hordeum vulgare | TATTATGGGACGGAGGGAGTA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_56507.1 cdna:novel chromosome:030312v2:2:24894587:24898152:1 gene:MLOC_56507 transcript:MLOC_56507.1 | 2 | 1143 | 0 | 8 | 1.6 | 2 | 5' TATTATGGGACGGAGGGAGTA 3' o||||||||| |o|||||||| 3' GAATGTAATACCCTCCTTCCCTCATTCTTAAT 5' |
1070 | Hordeum vulgare | TATTATGGGACGGAGGGAGTA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_58552.5 cdna:novel chromosome:030312v2:2:475555959:475559690:-1 gene:MLOC_58552 transcript:MLOC_58552.5 | 2 | 466 | 0 | 8 | 1.6 | 2 | 5' TATTATGGGACGGAGGGAGTA 3' o||||||||||o| ||||||| 3' GAATGTAATACCCTGTCGCCCTCATTAAAGAT 5' |
1071 | Hordeum vulgare | CTTATATTATGGGACGGAGGG | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_58552.5 cdna:novel chromosome:030312v2:2:475555959:475559690:-1 gene:MLOC_58552 transcript:MLOC_58552.5 | 2 | 470 | 0 | 12 | 1.5 | 2 | 5' CTTATATTATGGGACGGAGGG 3' ||||o||||||||||o| ||| 3' TGCAGAATGTAATACCCTGTCGCCCTCATTAA 5' |
1072 | Hordeum vulgare | TTTGGGACGGAGGGAGTACTG | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_4425.8 cdna:novel chromosome:030312v2:6:244732157:244735974:1 gene:MLOC_4425 transcript:MLOC_4425.8 | 2 | 1139 | 0.03 | 9 | 1.28571 | 3 | 5' TTTGGGACGGAGGGAGTACTG 3' || || |||||||||||| || 3' AATAAATCCATGCCTCCCTCAT-ACTCTATTA 5' |
1073 | Hordeum vulgare | ACTCCCTCTGTCCCAAAATAG | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_32803.1 cdna:novel chromosome:030312v2:5:559812611:559815128:-1 gene:MLOC_32803 transcript:MLOC_32803.1 | 2 | 1588 | 0 | 8 | 4 | 1 | 5' ACTCCCTCTGTCCCAAAATAG 3' ||||||||||| ||||||||| 3' ATGATGAGGGAGACAAGGTTTTATCCACAGAG 5' |
1074 | Hordeum vulgare | GCCACCGCAGCCGCTGCCGCA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_43626.1 cdna:known chromosome:030312v2:3HS:18114321:18115355:1 gene:MLOC_43626 transcript:MLOC_43626.1 | 0 | 580 | 0.03 | 16 | 16 | 4 | 5' GCCACCGCAGCCGCTGCCGCA 3' || || |||||||| ||||| 3' CAGTCGCTGTCGTCGGCG-CGGCGGAGGAGGA 5' |
1075 | Hordeum vulgare | TCGGACCAGGCTTCATTCC | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_61603.3 cdna:known chromosome:030312v2:1:192064052:192072095:-1 gene:MLOC_61603 transcript:MLOC_61603.3 | 0 | 1046 | 0 | 164 | 32.8 | 1 | 5' TCGGACCAGGCTTCATTCC 3' o|||||||||||||||o|| 3' CTTAGGCCTGGTCCGAAGTAGGGTCCGTAGCC 5' |
1076 | Hordeum vulgare | TCGGACCAGGCTTCATTCCC | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_61603.3 cdna:known chromosome:030312v2:1:192064052:192072095:-1 gene:MLOC_61603 transcript:MLOC_61603.3 | 0 | 1046 | 0 | 164 | 32.8 | 1.5 | 5' TCGGACCAGGCTTCATTCCC 3' o||||||||||||||| ||| 3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAGC 5' |
1077 | Hordeum vulgare | TCGGACCAGGCTTCATTCC | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_33978.4 cdna:novel chromosome:030312v2:5:492709362:492713465:-1 gene:MLOC_33978 transcript:MLOC_33978.4 | 0 | 622 | 0 | 152 | 16.8889 | 1 | 5' TCGGACCAGGCTTCATTCC 3' o|||||||||||||||o|| 3' CTTAGGCCTGGTCCGAAGTAGGGTTGGTAAAC 5' |
1078 | Hordeum vulgare | TCGGACCAGGCTTCATTCCC | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_33978.4 cdna:novel chromosome:030312v2:5:492709362:492713465:-1 gene:MLOC_33978 transcript:MLOC_33978.4 | 0 | 622 | 0 | 152 | 16.8889 | 1.5 | 5' TCGGACCAGGCTTCATTCCC 3' o||||||||||||||| ||| 3' CTTAGGCCTGGTCCGAAGTA-GGGTTGGTAAA 5' |
1079 | Hordeum vulgare | CTTCCGTCCCAAAATAAGTGA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_75925.3 cdna:known chromosome:030312v2:3HL:6935342:6940187:1 gene:MLOC_75925 transcript:MLOC_75925.3 | 2 | 1790 | 0.02 | 15 | 3.75 | 3 | 5' CTTCCGTCCCAAAATAAGTGA 3' |||||||||||||||||| 3' TGAAACAGGCAGGGTTTTATTCACAGAGTTGA 5' |
1080 | Hordeum vulgare | CTTATATTATGGGACGGAGGG | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_69110.1 cdna:known chromosome:030312v2:3:373793193:373797625:1 gene:MLOC_69110 transcript:MLOC_69110.1 | 0 | 1721 | 0 | 17 | 8.5 | 2 | 5' CTTATATTATGGGACGGAGGG 3' |o||||||||||o| |||||| 3' TGTTGGATATAATACCTTACCTCCCTCATGTA 5' |
1081 | Hordeum vulgare | TATTATGGGACGGAGGGAGTA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_59910.2 cdna:known chromosome:030312v2:2:74913503:74919764:-1 gene:MLOC_59910 transcript:MLOC_59910.2 | 2 | 216 | 0 | 19 | 2.11111 | 1 | 5' TATTATGGGACGGAGGGAGTA 3' |||| |||||||||||||||| 3' GTCAATAAAACCCTGCCTCCCTCATATACTAT 5' |
1082 | Hordeum vulgare | TGTACTCCCTCCGTTCCTAAA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_5347.1 cdna:novel chromosome:030312v2:2HS:10116351:10121217:-1 gene:MLOC_5347 transcript:MLOC_5347.1 | 2 | 1789 | 0.02 | 11 | 11 | 3 | 5' TGTACTCCCTCCGTTCCTAAA 3' ||||||||||||| ||| | | 3' AAGTACATGAGGGAGGCTAGG-TATAATTAAC 5' |
1083 | Hordeum vulgare | TTTTGGGACAGAGGAAGTACT | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_5651.2 cdna:known chromosome:030312v2:4:87404865:87410843:-1 gene:MLOC_5651 transcript:MLOC_5651.2 | 2 | 2107 | 0.05 | 15 | 7.5 | 3 | 5' TTTTGGGACAGAGGAAGTACT 3' ||| || ||||||||||||| 3' CAATAAATCCATGTCTCCTTCATGTGGATATC 5' |
1084 | Hordeum vulgare | TTATGGGACAGAGGGAGTACA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_5651.2 cdna:known chromosome:030312v2:4:87404865:87410843:-1 gene:MLOC_5651 transcript:MLOC_5651.2 | 2 | 2107 | 0.01 | 15 | 7.5 | 2.5 | 5' TTATGGGACAGAGGGAGTACA 3' ||| || |||||||o|||||| 3' AATAAAT-CCATGTCTCCTTCATGTGGATATC 5' |
1085 | Hordeum vulgare | TGTACTCCCTCCGTTCCTAAA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_9522.1 cdna:novel chromosome:030312v2:1:124351345:124353037:1 gene:MLOC_9522 transcript:MLOC_9522.1 | 2 | 711 | 0.02 | 15 | 15 | 3.5 | 5' TGTACTCCCTCCGTTCC-TAAA 3' ||||||||||||o|| |||| 3' TCTATGATGAGGGAGGCAGGGTATTTTCAGGG 5' |
1086 | Hordeum vulgare | TTTTGGGACGGAGTGAGTATT | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_53015.2 cdna:known chromosome:030312v2:7HS:6327789:6334296:1 gene:MLOC_53015 transcript:MLOC_53015.2 | 2 | 1675 | 0 | 4 | 2 | 2.5 | 5' TTTTGGGACGGAGTGAGTATT 3' ||||||||||||| |||||o 3' GAATAAAACCCTGCCTCCCTCATGTTTTATGT 5' |
1087 | Hordeum vulgare | TTTTGGGACGGAGGGAGTAAC | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_53015.2 cdna:known chromosome:030312v2:7HS:6327789:6334296:1 gene:MLOC_53015 transcript:MLOC_53015.2 | 2 | 1675 | 0 | 4 | 2 | 1 | 5' TTTTGGGACGGAGGGAGTAAC 3' ||||||||||||||||||| | 3' GAATAAAACCCTGCCTCCCTCAT-GTTTTATG 5' |
1088 | Hordeum vulgare | TGACAGAAGAGAGTGAGCACA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_37841.2 cdna:known chromosome:030312v2:7:214318191:214323478:1 gene:MLOC_37841 transcript:MLOC_37841.2 | 0 | 638 | 0 | 45 | 22.5 | 1 | 5' TGACAGAAGAGAGTGAGCACA 3' ||||||||||||| ||||||| 3' CTCGACTGTCTTCTCTCTCTCGTGTCAGGCTC 5' |
1089 | Hordeum vulgare | GCATAGCATCATGAGCAATCA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_70472.3 cdna:novel chromosome:030312v2:1:454920596:454923672:1 gene:MLOC_70472 transcript:MLOC_70472.3 | 0 | 771 | 0.03 | 15 | 5 | 4 | 5' GCATAGCATCATGAGCAATCA 3' | |||o|||||| |o|| ||| 3' TAACCATATTGTAGTAGTTGT-AGTCACTTAA 5' |
1090 | Hordeum vulgare | CTTCCGTCCCAAAATAAGTGA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_69556.1 cdna:novel chromosome:030312v2:5HS:841593:846345:-1 gene:MLOC_69556 transcript:MLOC_69556.1 | 2 | 4051 | 0 | 8 | 4 | 1.5 | 5' CTTCCGTCCCAAAATAAGTGA 3' |o|||||||||||||||||| 3' TGAGGGAGGCAGGGTTTTATTCACAGCGACGA 5' |
1091 | Hordeum vulgare | TTTGGATTGAAGGGAGCTCTG | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_74051.5 cdna:novel chromosome:030312v2:7:510581541:510584593:-1 gene:MLOC_74051 transcript:MLOC_74051.5 | 0 | 1694 | 0 | 22 | 5.5 | 3 | 5' TTTGGATTGAAGGGAGCTCTG 3' ||||| ||||||||o|||o| 3' CGTATAACCTTACTTCCCTTGAGGCAAAATTA 5' |
1092 | Hordeum vulgare | TGTACTCCCTCCGTTCCTAAA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_61642.2 cdna:known chromosome:030312v2:7:555938286:555947384:1 gene:MLOC_61642 transcript:MLOC_61642.2 | 2 | 1446 | 0 | 9 | 9 | 2 | 5' TGTACTCCCTCCGTTCCTAAA 3' |o||||||||||||o|| ||| 3' TACAATATGAGGGAGGCAGGGTTTTATTCACA 5' |
1093 | Hordeum vulgare | AGTACTTCCTCCGTCCCAAAA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_61642.2 cdna:known chromosome:030312v2:7:555938286:555947384:1 gene:MLOC_61642 transcript:MLOC_61642.2 | 2 | 1446 | 0 | 9 | 9 | 1.5 | 5' AGTACTTCCTCCGTCCCAAAA 3' | ||||o|||||||||||||| 3' ACAAT-ATGAGGGAGGCAGGGTTTTATTCACA 5' |
1094 | Hordeum vulgare | TGACAGAAGAGAGTGAGCACA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_61297.1 cdna:known chromosome:030312v2:7:224856072:224859310:-1 gene:MLOC_61297 transcript:MLOC_61297.1 | 0 | 787 | 0 | 14 | 4.66667 | 1 | 5' TGACAGAAGAGAGTGAGCACA 3' ||||||||||||| ||||||| 3' CTCAACTGTCTTCTCTCTCTCGTGTCGACCTC 5' |
1095 | Hordeum vulgare | TATTATGGGACGGAGGGAGTA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_52861.1 cdna:novel chromosome:030312v2:3HS:9317676:9318444:-1 gene:MLOC_52861 transcript:MLOC_52861.1 | 2 | 663 | 0.05 | 7 | 7 | 3.5 | 5' TATTATGGGACGGAGGGAGTA 3' |||||o||o| |||o| |||| 3' AATAATAATGCCTTACCTTC-TCATCCAATTA 5' |
1096 | Hordeum vulgare | CTGACAGAAGAGAGTGAGCAC | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_61297.1 cdna:known chromosome:030312v2:7:224856072:224859310:-1 gene:MLOC_61297 transcript:MLOC_61297.1 | 2 | 788 | 0.01 | 4 | 1.33333 | 2 | 5' CTGACAGAAGAGAGTGAGCAC 3' ||||||||||||| |||||| 3' ACTCAACTGTCTTCTCTCTCTCGTGTCGACCT 5' |
1097 | Hordeum vulgare | TGATTGAGCCGTGCCAATAT | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_16514.1 cdna:novel chromosome:030312v2:7:2773139:2774808:1 gene:MLOC_16514 transcript:MLOC_16514.1 | 2 | 38 | 0 | 30 | 30 | 0.5 | 5' TGATTGAGCCGTGCCAATAT 3' |||||||||||o|||||||| 3' GGCCACTAACTCGGCGCGGTTATAGAGCGCGC 5' |
1098 | Hordeum vulgare | TCCTAAATACTTGTTGTTGGG | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_68408.1 cdna:novel chromosome:030312v2:1:140583768:140600726:-1 gene:MLOC_68408 transcript:MLOC_68408.1 | 2 | 8900 | 0 | 22 | 3.14286 | 0 | 5' TCCTAAATACTTGTTGTTGGG 3' ||||||||||||||||||||| 3' GACAAGGATTTATGAACAACAACCCCTCTTGA 5' |
1099 | Hordeum vulgare | TATTATGGGACGGAGGGAGTA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_69582.1 cdna:novel chromosome:030312v2:2HS:406041:407531:1 gene:MLOC_69582 transcript:MLOC_69582.1 | 2 | 1379 | 0 | 7 | 7 | 1 | 5' TATTATGGGACGGAGGGAGTA 3' |||| |||||||||||||||| 3' GTTAATAAAACCCTGCCTCCCTCATATTGTAT 5' |
1100 | Hordeum vulgare | TTTGGGACGGAGGGAGTACTG | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_69582.1 cdna:novel chromosome:030312v2:2HS:406041:407531:1 gene:MLOC_69582 transcript:MLOC_69582.1 | 2 | 1376 | 0.01 | 2 | 2 | 1.5 | 5' TTTGGGACGGAGGGAGTACTG 3' |||||||||||||||||| |o 3' AATAAAACCCTGCCTCCCTCAT-ATTGTATCC 5' |
1101 | Hordeum vulgare | TATGGGACGGAGGGAGTATCT | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_69582.1 cdna:novel chromosome:030312v2:2HS:406041:407531:1 gene:MLOC_69582 transcript:MLOC_69582.1 | 2 | 1376 | 0.02 | 2 | 2 | 3 | 5' TATGGGACGGAGGGAGTATCT 3' | ||||||||||||||||| 3' AATAAAACCCTGCCTCCCTCATATTGTATCCC 5' |
1102 | Hordeum vulgare | TTATTTTGGGACGGAGGGAGT | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_69582.1 cdna:novel chromosome:030312v2:2HS:406041:407531:1 gene:MLOC_69582 transcript:MLOC_69582.1 | 2 | 1380 | 0 | 2 | 2 | 0 | 5' TTATTTTGGGACGGAGGGAGT 3' ||||||||||||||||||||| 3' AGTTAATAAAACCCTGCCTCCCTCATATTGTA 5' |
1103 | Hordeum vulgare | CTCCGTTCCTAAATATAAGTA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_51860.3 cdna:novel chromosome:030312v2:3:12123027:12128342:-1 gene:MLOC_51860 transcript:MLOC_51860.3 | 2 | 3235 | 0 | 6 | 2 | 2.5 | 5' CTCCGTTCCTAAATATAAGTA 3' |||||||||| ||||o| ||| 3' GAGGGAGGCAAGGAATTATGT-CATATTCTGG 5' |
1104 | Hordeum vulgare | TGACAGAAGAGAGTGAGCACA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_52321.2 cdna:known chromosome:030312v2:3:518753339:518756802:-1 gene:MLOC_52321 transcript:MLOC_52321.2 | 0 | 690 | 0 | 87 | 21.75 | 1 | 5' TGACAGAAGAGAGTGAGCACA 3' ||||||||||||| ||||||| 3' ACAGACTGTCTTCTCTCTCTCGTGTCAACACC 5' |
1105 | Hordeum vulgare | TATTATGGGACGGAGGGAGTA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_6897.4 cdna:known chromosome:030312v2:7:547221774:547225949:1 gene:MLOC_6897 transcript:MLOC_6897.4 | 0 | 1243 | 0 | 271 | 135.5 | 2 | 5' TATTATGGGACGGAGGGAGTA 3' |||||||| |||||||| ||| 3' GTATATAATACCGTGCCTCCCCCATCAATGTT 5' |
1106 | Hordeum vulgare | ATTATGGAACGGAGGGAGT | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_6897.4 cdna:known chromosome:030312v2:7:547221774:547225949:1 gene:MLOC_6897 transcript:MLOC_6897.4 | 2 | 1242 | 0.01 | 14 | 7 | 2 | 5' ATTATGGAACGGAGGGAGT 3' ||||||| |||||||| || 3' TATATAATACCGTGCCTCCCCCATCAATGTTT 5' |
1107 | Hordeum vulgare | TATTATGGGACGGAGGGAGTA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_1236.6 cdna:novel chromosome:030312v2:7:588501118:588502025:1 gene:MLOC_1236 transcript:MLOC_1236.6 | 2 | 396 | 0.04 | 8 | 2.66667 | 3 | 5' TATTA-TGGGACGGAGGGAGTA 3' o|||| |||o| |||||||||| 3' GATGTAATAACCTTACCTCCCTCATGGTTTTA 5' |
1108 | Hordeum vulgare | ATTATGGAACGGAGGGAGT | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_61904.2 cdna:novel chromosome:030312v2:2HL:3:12085:1 gene:MLOC_61904 transcript:MLOC_61904.2 | 2 | 4905 | 0 | 11 | 5.5 | 1 | 5' ATTATGGAACGGAGGGAGT 3' ||| ||||||||||||||| 3' TTGATAAAACCTTGCCTCCCTCATGTTCGTCT 5' |
1109 | Hordeum vulgare | TTTTGGGACGGAGTGAGTATT | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_69582.1 cdna:novel chromosome:030312v2:2HS:406041:407531:1 gene:MLOC_69582 transcript:MLOC_69582.1 | 2 | 1377 | 0.01 | 3 | 3 | 2 | 5' TTTTGGGACGGAGTGAGTATT 3' ||||||||||||| |||||| 3' TAATAAAACCCTGCCTCCCTCATATTGTATCC 5' |
1110 | Hordeum vulgare | TTTTGGAACGGAGGGAGTACT | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_69582.1 cdna:novel chromosome:030312v2:2HS:406041:407531:1 gene:MLOC_69582 transcript:MLOC_69582.1 | 2 | 1377 | 0 | 3 | 3 | 2 | 5' TTTTGGAACGGAGGGAGTACT 3' |||||| |||||||||||| | 3' TAATAAAACCCTGCCTCCCTCAT-ATTGTATC 5' |
1111 | Hordeum vulgare | TTTTGGAACGGAGGGAGTATC | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_26643.4 cdna:novel chromosome:030312v2:4:90497913:90501180:1 gene:MLOC_26643 transcript:MLOC_26643.4 | 2 | 981 | 0.05 | 13 | 1.85714 | 3.5 | 5' TTTTGGAACGGAGGGAGTATC 3' |||o|| ||||||o|||||o 3' CATAAAAGCC-TGCCTCTCTCATGAGAGAATA 5' |
1112 | Hordeum vulgare | TTATTTTGGGACGGAGGGAGT | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_11772.4 cdna:novel chromosome:030312v2:3:409997449:410002809:1 gene:MLOC_11772 transcript:MLOC_11772.4 | 2 | 3165 | 0 | 10 | 5 | 2 | 5' TTATTTTGGGACGGAGGGAGT 3' |||o||||o|| ||||||||| 3' AGTGAATGAAACTCTACCTCCCTCATCTTGTG 5' |
1113 | Hordeum vulgare | TATTATGGGACGGAGGGAGTA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_72849.6 cdna:known chromosome:030312v2:5:32062940:32069184:-1 gene:MLOC_72849 transcript:MLOC_72849.6 | 2 | 870 | 0.01 | 8 | 1.6 | 2 | 5' TATTATGGGACGGAGGGAGTA 3' |||| |||||||||||||| | 3' GTGAATAAAACCCTGCCTCCCTCCTATACTGT 5' |
1114 | Hordeum vulgare | GATTTGTCCACGTCATCACAA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_61904.4 cdna:novel chromosome:030312v2:2HL:4:12036:1 gene:MLOC_61904 transcript:MLOC_61904.4 | 2 | 1873 | 0.04 | 5 | 0.833333 | 3 | 5' GATTTGTCCACGTCATCACAA 3' |||o|||||| || |o||||| 3' CATACTAGACAGGTACA-TGGTGTTACATAGA 5' |
1115 | Hordeum vulgare | AAGCCAAGGATGAGTTGCCTG | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_24655.1 cdna:novel chromosome:030312v2:5HL:34097857:34099120:1 gene:MLOC_24655 transcript:MLOC_24655.1 | 2 | 740 | 0.01 | 46 | 46 | 2.5 | 5' AAGCCAAGGATGAGTTGCCTG 3' |||||||o|||| ||||||| 3' TCATCTCGGTTCTTACTAAACGGACGTCCGTT 5' |
1116 | Hordeum vulgare | TCCACAGGCTTTCTTGAACTG | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_80060.2 cdna:novel chromosome:030312v2:5HL:22774025:22775272:-1 gene:MLOC_80060 transcript:MLOC_80060.2 | 0 | 853 | 0 | 47 | 23.5 | 1 | 5' TCCACAGGCTTTCTTGAACTG 3' ||||||||||||||||||| | 3' AGGAAGGTGTCCGAAAGAACTTGCCGGCGCCG 5' |
1117 | Hordeum vulgare | TATTATGGGACGGAGGGAGTA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_34478.1 cdna:novel chromosome:030312v2:5:333694744:333703755:1 gene:MLOC_34478 transcript:MLOC_34478.1 | 2 | 855 | 0 | 19 | 2.11111 | 1 | 5' TATTATGGGACGGAGGGAGTA 3' |||| |||||||||||||||| 3' GTCAATAAAACCCTGCCTCCCTCATCAAACAT 5' |
1118 | Hordeum vulgare | TCGGACCAGGCTTCATTCC | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_58644.2 cdna:novel chromosome:030312v2:5:32050369:32056315:-1 gene:MLOC_58644 transcript:MLOC_58644.2 | 0 | 809 | 0 | 152 | 16.8889 | 0.5 | 5' TCGGACCAGGCTTCATTCC 3' o|||||||||||||||||| 3' CTTAGGCCTGGTCCGAAGTAAGGGTAGTAAAC 5' |
1119 | Hordeum vulgare | GTACTTCCTTCGTCCCAAAAT | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_17792.1 cdna:known chromosome:030312v2:5:394483785:394486837:-1 gene:MLOC_17792 transcript:MLOC_17792.1 | 2 | 658 | 0.03 | 7 | 7 | 3.5 | 5' GTACTTCCT-TCGTCCCAAAAT 3' o|||||||| || || |||||| 3' CGTTATGAAGGACAGGAGCGTTTTAGTAAGCG 5' |
1120 | Hordeum vulgare | TTTTGGGACGGAGGGAGTAT | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_61904.2 cdna:novel chromosome:030312v2:2HL:3:12085:1 gene:MLOC_61904 transcript:MLOC_61904.2 | 2 | 4904 | 0 | 5 | 2.5 | 1 | 5' TTTTGGGACGGAGGGAGTAT 3' ||||||o||||||||||||o 3' TGATAAAACCTTGCCTCCCTCATGTTCGTCTG 5' |
1121 | Hordeum vulgare | TTTTGGGACGGAGGGAGTAAC | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_61904.2 cdna:novel chromosome:030312v2:2HL:3:12085:1 gene:MLOC_61904 transcript:MLOC_61904.2 | 2 | 4904 | 0 | 5 | 2.5 | 1.5 | 5' TTTTGGGACGGAGGGAGTAAC 3' ||||||o|||||||||||| | 3' TGATAAAACCTTGCCTCCCTCAT-GTTCGTCT 5' |
1122 | Hordeum vulgare | CTCCGTTCCTAAATATAAGTC | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_51860.1 cdna:novel chromosome:030312v2:3:12122978:12128352:-1 gene:MLOC_51860 transcript:MLOC_51860.1 | 2 | 3313 | 0.04 | 6 | 2 | 3.5 | 5' CTCCGTTCCTAAATATAAGTC 3' |||||||||| ||||o| || 3' GAGGGAGGCAAGGAATTATGT-CATATTCTGG 5' |
1123 | Hordeum vulgare | TATTATGGGACGGAGGGAGTA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_79070.1 cdna:novel chromosome:030312v2:4:299437015:299441733:-1 gene:MLOC_79070 transcript:MLOC_79070.1 | 2 | 1910 | 0 | 4 | 4 | 2 | 5' TATTATGGGACGGAGGGAGTA 3' |||| ||||| |||||||||| 3' GTAAATAAAACCCTACCTCCCTCATCATCGAA 5' |
1124 | Hordeum vulgare | TATTATGGGACGGAGGGAGTA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_69518.1 cdna:novel chromosome:030312v2:7:523831801:523835346:1 gene:MLOC_69518 transcript:MLOC_69518.1 | 2 | 1103 | 0 | 8 | 1.6 | 1 | 5' TATTATGGGACGGAGGGAGTA 3' |||| |||||||||||||||| 3' GTGAATAAAACCCTGCCTCCCTCATAAAGAAA 5' |
1125 | Hordeum vulgare | TGCAGTTGCTGCCTCAAGCTT | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_73623.1 cdna:known chromosome:030312v2:7:575064402:575067960:-1 gene:MLOC_73623 transcript:MLOC_73623.1 | 2 | 1119 | 0.05 | 15 | 7.5 | 2.5 | 5' TGCAGTTGCTGCCTCAAGCTT 3' ||||| |||||||||| ||o| 3' TAGAACGTCTACGACGGAGT-CGGAGTGTTAG 5' |
1126 | Hordeum vulgare | TGATTGAGCCGTGCCAATAT | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_43989.1 cdna:novel chromosome:030312v2:6HL:11132556:11134798:1 gene:MLOC_43989 transcript:MLOC_43989.1 | 2 | 903 | 0 | 204 | 102 | 0.5 | 5' TGATTGAGCCGTGCCAATAT 3' |||||||||||o|||||||| 3' GACCACTAACTCGGCGCGGTTATAGAGTGCGC 5' |
1127 | Hordeum vulgare | TGCAGTTGTTGCCTCATGCTT | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_73623.2 cdna:novel chromosome:030312v2:7:575064570:575067750:-1 gene:MLOC_73623 transcript:MLOC_73623.2 | 0 | 909 | 0 | 15 | 7.5 | 3 | 5' TGCAGTTGTTGCCTCATGCTT 3' ||||| ||o||||||| ||o| 3' TAGAACGTCTACGACGGAGT-CGGAGTGTTAG 5' |
1128 | Hordeum vulgare | TATTATGGGACGGAGGGAGTA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_59824.3 cdna:novel chromosome:030312v2:5:295978958:295982464:-1 gene:MLOC_59824 transcript:MLOC_59824.3 | 2 | 817 | 0 | 2 | 2 | 1 | 5' TATTATGGGACGGAGGGAGTA 3' |||| |||||||||||||||| 3' GTGAATAAAACCCTGCCTCCCTCATTCATTTT 5' |
1129 | Hordeum vulgare | TTTTGGGACGGAGTGAGTATT | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_61904.6 cdna:novel chromosome:030312v2:2HL:6048:12085:1 gene:MLOC_61904 transcript:MLOC_61904.6 | 2 | 4807 | 0.02 | 5 | 2.5 | 3 | 5' TTTTGGGACGGAGTGAGTATT 3' ||||||o|||||| |||||o 3' TGATAAAACCTTGCCTCCCTCATGTTCGTCTG 5' |
1130 | Hordeum vulgare | AGTCTACTCCCTCCGTTCCTA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_6070.4 cdna:known chromosome:030312v2:6HS:2185538:2188313:1 gene:MLOC_6070 transcript:MLOC_6070.4 | 2 | 1680 | 0.01 | 6 | 6 | 2.5 | 5' AGT-CTACTCCCTCCGTTCCTA 3' |o| |||||||||||||||| | 3' GTTTTATGATGAGGGAGGCAAGGTTTTNNNNA 5' |
1131 | Hordeum vulgare | GTATTTACTCCCTCCGTTCTA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_55064.1 cdna:known chromosome:030312v2:4:539278540:539280461:1 gene:MLOC_55064 transcript:MLOC_55064.1 | 2 | 555 | 0.02 | 15 | 15 | 3 | 5' GTATTTACTCCCTCCGTTCTA 3' ||o||||||||||||||o| 3' CAAGATTAGATGAGGGAGGCAAGGTTTTATTC 5' |
1132 | Hordeum vulgare | TTACTCCCTCCGTCCTAAAAT | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_7480.1 cdna:novel chromosome:030312v2:1H:5846411:5849197:1 gene:MLOC_7480 transcript:MLOC_7480.1 | 2 | 2410 | 0.02 | 8 | 4 | 3 | 5' TTACTCCCTCCGTCCTAAAAT 3' || ||||||||o||o||||| 3' TATGTATAAGGGAGGCGGGGTTTTATTCAATG 5' |
1133 | Hordeum vulgare | GTATTCCCTCCGTCCCAAATA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_7480.1 cdna:novel chromosome:030312v2:1H:5846411:5849197:1 gene:MLOC_7480 transcript:MLOC_7480.1 | 2 | 2410 | 0 | 8 | 4 | 2 | 5' GTATTCCCTCCGTCCCAAATA 3' o|||||||||||o|||||| | 3' TATGTATAAGGGAGGCGGGGTTT-TATTCAAT 5' |
1134 | Hordeum vulgare | TCCTAAATACTTGTTGTTGGG | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_5661.2 cdna:known chromosome:030312v2:3:461455521:461457482:-1 gene:MLOC_5661 transcript:MLOC_5661.2 | 2 | 861 | 0 | 22 | 3.14286 | 0 | 5' TCCTAAATACTTGTTGTTGGG 3' ||||||||||||||||||||| 3' GACAAGGATTTATGAACAACAACCCCTCTTGA 5' |
1135 | Hordeum vulgare | TTTGGATTGAAGGGAGCTCTG | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_71332.1 cdna:novel chromosome:030312v2:3:466323274:466326190:-1 gene:MLOC_71332 transcript:MLOC_71332.1 | 2 | 869 | 0.02 | 185 | 92.5 | 2.5 | 5' TTTGGATTGAAGGGAGCTCTG 3' o||||| ||||||||||||oo 3' CATAGAACCTCACTTCCCTCGAGGTAGAAGTT 5' |
1136 | Hordeum vulgare | TATAGTACTCCCTCCGTCCGG | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_62271.2 cdna:novel chromosome:030312v2:1H:33825500:33826177:-1 gene:MLOC_62271 transcript:MLOC_62271.2 | 2 | 593 | 0.02 | 15 | 7.5 | 3 | 5' TATAGTACTCCCTCCGTCCGG 3' | |||| ||||||||||||oo 3' TATTAGATCAAGAGGGAGGCAGGTTACATGAG 5' |
1137 | Hordeum vulgare | TCCACAGGCTTTCTTGAACTG | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_75225.1 cdna:novel chromosome:030312v2:3HL:14015810:14018279:-1 gene:MLOC_75225 transcript:MLOC_75225.1 | 0 | 768 | 0 | 127 | 127 | 3.5 | 5' TCCACAGGCTTTCTTGAACTG 3' ||||||o|||| ||||| || 3' GAGGAGGTGTTCGAA-GAACTCGAGTGGTTAG 5' |
1138 | Hordeum vulgare | TATTATGGGACGGAGGGAGTA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_43693.4 cdna:novel chromosome:030312v2:1:339618210:339621726:-1 gene:MLOC_43693 transcript:MLOC_43693.4 | 2 | 1772 | 0 | 4 | 1.33333 | 1.5 | 5' TATTATGGGACGGAGGGAGTA 3' |||| ||o||||||||||||| 3' GTGAATAAAACTCTGCCTCCCTCATGGAACGA 5' |
1139 | Hordeum vulgare | CGCAGCTGTAGTCGCCGGCGT | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_65066.1 cdna:novel chromosome:030312v2:2:233087046:233088708:-1 gene:MLOC_65066 transcript:MLOC_65066.1 | 2 | 414 | 0.04 | 8 | 2.66667 | 3 | 5' CGCAGCTGTAGTCGCCGGCGT 3' || |||o||||||||||o|| 3' CCCAGCTTCGGCATCAGCGGCTGCTCGCACGG 5' |
1140 | Hordeum vulgare | AAGCCAAGGATGAGTTGCCTG | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_36747.1 cdna:novel chromosome:030312v2:7:35966124:35967043:-1 gene:MLOC_36747 transcript:MLOC_36747.1 | 2 | 659 | 0.01 | 9 | 9 | 3 | 5' AAGCCAAGGATGAGTTGCCTG 3' ||o| ||||||||oo|||||o 3' ATAATTTGCTTCCTACTTGACGGATGATTGCC 5' |
1141 | Hordeum vulgare | TTTGGATTGAAGGGAGCTCTG | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_4149.5 cdna:novel chromosome:030312v2:7:96045517:96047783:-1 gene:MLOC_4149 transcript:MLOC_4149.5 | 0 | 788 | 0 | 9 | 1.8 | 3.5 | 5' TTTGGATTGAAGGGAGCTCTG 3' |||| |o|o||||||o|| || 3' TAAGAAACGTGATTTCCCTTGA-ACGAAGCAT 5' |
1142 | Hordeum vulgare | AGGGTCATCTGTGACGGGCTC | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_8224.2 cdna:novel chromosome:030312v2:7HL:13076770:13079417:1 gene:MLOC_8224 transcript:MLOC_8224.2 | 2 | 753 | 0 | 12 | 12 | 2.5 | 5' AGGGTCATCTGTGACGGGCTC 3' |||||||||| ||||| o||| 3' GAGGTCCCAGTAGAAACTGCGTGAGAGAGGTA 5' |
1143 | Hordeum vulgare | TGCAGTTGTTGCCTCATGCTT | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_16182.1 cdna:novel chromosome:030312v2:7HL:17469123:17471345:-1 gene:MLOC_16182 transcript:MLOC_16182.1 | 2 | 1441 | 0.01 | 20 | 20 | 2.5 | 5' TGCAGTTGTTGCCTCATGCTT 3' |||||o||o||||||| |||o 3' GTATACGTCGACGACGGAGTTCGAGAGTGAGG 5' |
1144 | Hordeum vulgare | TTTGGGACGGAGGGAGTACTG | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_72495.1 cdna:known chromosome:030312v2:3:542235938:542240994:1 gene:MLOC_72495 transcript:MLOC_72495.1 | 2 | 1797 | 0 | 10 | 10 | 1 | 5' TTTGGGACGGAGGGAGTACTG 3' |||o||||||||||||||||o 3' AATAAAATCCTGCCTCCCTCATGATGCTTTCT 5' |
1145 | Hordeum vulgare | TATGGGACGGAGGGAGTATCT | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_72495.1 cdna:known chromosome:030312v2:3:542235938:542240994:1 gene:MLOC_72495 transcript:MLOC_72495.1 | 2 | 1797 | 0.01 | 10 | 10 | 2.5 | 5' TATGGGACGGAGGGAGTATCT 3' | |o|||||||||||||| || 3' AATAAAATCCTGCCTCCCTCAT-GATGCTTTC 5' |
1146 | Hordeum vulgare | TTTTGGGACGGAGTGAGTATT | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_59824.3 cdna:novel chromosome:030312v2:5:295978958:295982464:-1 gene:MLOC_59824 transcript:MLOC_59824.3 | 2 | 815 | 0 | 4 | 2 | 3 | 5' TTTTGGGACGGAGTGAGTATT 3' ||||||||||||| ||||| 3' GAATAAAACCCTGCCTCCCTCATTCATTTTTT 5' |
1147 | Hordeum vulgare | TTTTGGGACGGAGGGAGTACA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_59824.3 cdna:novel chromosome:030312v2:5:295978958:295982464:-1 gene:MLOC_59824 transcript:MLOC_59824.3 | 2 | 815 | 0 | 4 | 2 | 1 | 5' TTTTGGGACGGAGGGAGTACA 3' ||||||||||||||||||| | 3' GAATAAAACCCTGCCTCCCTCAT-TCATTTTT 5' |
1148 | Hordeum vulgare | TATGGGACGGAGGGAGTATCT | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_26643.11 cdna:novel chromosome:030312v2:4:90497928:90501178:1 gene:MLOC_26643 transcript:MLOC_26643.11 | 2 | 969 | 0.03 | 20 | 2.85714 | 3.5 | 5' TATGGGACGGAGGGAGTATCT 3' | | ||||||||o||||| || 3' CATAAAAGCCTGCCTCTCTCAT-GAGAGAATA 5' |
1149 | Hordeum vulgare | TATTATGGGACGGAGGGAGTA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_52585.1 cdna:novel chromosome:030312v2:4:311693944:311697760:1 gene:MLOC_52585 transcript:MLOC_52585.1 | 2 | 1388 | 0 | 5 | 5 | 1.5 | 5' TATTATGGGACGGAGGGAGTA 3' | |||||||||||||||||o| 3' GAATACAATACCCTGCCTCCCTCGTTTACGTC 5' |
1150 | Hordeum vulgare | GCGAGCTTCTCGAAGATGTCG | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_81642.2 cdna:novel chromosome:030312v2:1:428711220:428717090:-1 gene:MLOC_81642 transcript:MLOC_81642.2 | 2 | 44 | 0 | 22 | 11 | 1 | 5' GCGAGCTTCTCGAAGATGTCG 3' ||||||||||||| ||||||| 3' CGGCCGCTCGAAGAGCTGCTACAGCAACTACT 5' |
1151 | Hordeum vulgare | CTCCGTTCCTAAATATAAGTT | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_51860.2 cdna:novel chromosome:030312v2:3:12123027:12128342:-1 gene:MLOC_51860 transcript:MLOC_51860.2 | 2 | 3495 | 0.05 | 6 | 2 | 3.5 | 5' CTCCGTTCCTAAATATAAGTT 3' |||||||||| ||||o| || 3' GAGGGAGGCAAGGAATTATGT-CATATTCTGG 5' |
1152 | Hordeum vulgare | TGCAGTTGCTGCCTCAAGCTT | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_22069.6 cdna:novel chromosome:030312v2:3HL:6136431:6138520:1 gene:MLOC_22069 transcript:MLOC_22069.6 | 2 | 717 | 0.02 | 12 | 1.71429 | 2.5 | 5' TGCAGTTGCTGCCTCAAGCTT 3' oo|||||||||||||| |||o 3' AAAGGTGTCAACGACGGAGT-CGAGTACTTCT 5' |
1153 | Hordeum vulgare | TATTATGGGACGGAGGGAGTA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_37946.5 cdna:novel chromosome:030312v2:5:188989229:188992900:1 gene:MLOC_37946 transcript:MLOC_37946.5 | 2 | 191 | 0 | 19 | 2.11111 | 1.5 | 5' TATTATGGGACGGAGGGAGTA 3' |||| ||||||o||||||||| 3' GTCAATAAAACCCTGTCTCCCTCATAAACAGA 5' |
1154 | Hordeum vulgare | TTTTGGAACAGAGTGAGTACA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_78729.2 cdna:novel chromosome:030312v2:1H:12201189:12203890:1 gene:MLOC_78729 transcript:MLOC_78729.2 | 1 | 1469 | 0.01 | 6 | 6 | 4 | 5' TTTTGGAACAGAGTGAGTACA 3' ||| |||||| | ||| |||| 3' ATTTAAATCCTTGTATAACTAATGTGGATCGA 5' |
1155 | Hordeum vulgare | CGCAGCTGTAGTCGCCGGCGT | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_68363.1 cdna:novel chromosome:030312v2:3:1893140:1895279:-1 gene:MLOC_68363 transcript:MLOC_68363.1 | 2 | 546 | 0.04 | 3 | 1 | 3 | 5' CGCAGCTGTAGTCGCCGGCGT 3' ||||||o| || ||||||||o 3' CGGGGCGTCGGCCTCCGCGGCCGCGGCCGCGG 5' |
1156 | Hordeum vulgare | TATAGTACTCCCTCCGTCCCG | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_62271.1 cdna:novel chromosome:030312v2:1H:33825497:33826822:-1 gene:MLOC_62271 transcript:MLOC_62271.1 | 2 | 752 | 0.02 | 15 | 7.5 | 3.5 | 5' TATAGTACTCCCTCCGTCCCG 3' | |||| |||||||||||| o 3' TATTAGATCAAGAGGGAGGCAGGTTACATGAG 5' |
1157 | Hordeum vulgare | CTGACAGAAGAGAGTGAGCAC | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_52321.4 cdna:novel chromosome:030312v2:3:518753505:518756746:-1 gene:MLOC_52321 transcript:MLOC_52321.4 | 2 | 637 | 0 | 4 | 1 | 1 | 5' CTGACAGAAGAGAGTGAGCAC 3' |||||||||||||| |||||| 3' AACAGACTGTCTTCTCTCTCTCGTGTCAACAC 5' |
1158 | Hordeum vulgare | TATTATGGGACGGAGGGAGTA | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_78409.3 cdna:novel chromosome:030312v2:5:560101869:560105791:1 gene:MLOC_78409 transcript:MLOC_78409.3 | 2 | 2467 | 0 | 19 | 2.11111 | 1.5 | 5' TATTATGGGACGGAGGGAGTA 3' |||| ||||||o||||||||| 3' GTCAATAAAACCCTGTCTCCCTCATCATTATT 5' |
1159 | Hordeum vulgare | TATACTCCCTCCGTCCGAAAT | alignment | plot | GSE38755_PARE-unique.norm.1-5_DPA | MLOC_63462.1 cdna:novel chromosome:030312v2:2:53816820:53821954:1 gene:MLOC_63462 transcript:MLOC_63462.1 | 2 | 1796 | 0.03 | 10 | 5 | 3.5 | 5' TATACTCCCTCCGTCCGAAAT 3' | ||||||||||o||| ||| 3' TAATAGATGAGGGAGGTAGGGTTTTATTCACA 5' |
1160 | Malus domestica | TTGATGATGCTGCATCTGCAA | alignment | plot | GSM880656_apple_deg_proc | MDP0000153157 | 0 | 780 | 0.02 | 8 | 8 | 3.5 | 5' TTGATGATGCTGCATCTGCAA 3' | ||||||o|| | ||||||| 3' AGACATCTACTATGAAGAAGACGTTCCGAACG 5' |
1161 | Malus domestica | GGAATCTTGATGATGCTGCA | alignment | plot | GSM880656_apple_deg_proc | MDP0000130802 | 0 | 1300 | 0 | 4 | 2 | 0.5 | 5' GGAATCTTGATGATGCTGCA 3' ||||||o||||||||||||| 3' CTACCCTTAGGACTACTACGACGTTATCTTTT 5' |
1162 | Malus domestica | GCGTATGAGGAGCCATGCATA | alignment | plot | GSM880656_apple_deg_proc | MDP0000181200 | 2 | 1750 | 0.04 | 5 | 2.5 | 3.5 | 5' GCGTATGAGGAGCCATGCATA 3' ||||||||||o ||||||| 3' CGAAGGCATACTCCTTCGTACGTACGTTGTGT 5' |
1164 | Malus domestica | GGAATCTTGATGATGCTGCA | alignment | plot | GSM880656_apple_deg_proc | MDP0000285955 | 0 | 1300 | 0 | 43 | 21.5 | 0.5 | 5' GGAATCTTGATGATGCTGCA 3' ||||||o||||||||||||| 3' CTACCCTTAGGACTACTACGACGTTACCTTAT 5' |
1166 | Malus domestica | GGAATCTTGATGATGCTGCA | alignment | plot | GSM880656_apple_deg_proc | MDP0000296716 | 2 | 1267 | 0 | 7 | 2.33333 | 1 | 5' GGAATCTTGATGATGCTGCA 3' o|||||o||||||||||||| 3' TTACTCTTAGGACTACTACGACGTCATCTCTT 5' |
1167 | Malus domestica | TCATCATCATCATCATCATCA | alignment | plot | GSM880656_apple_deg_proc | MDP0000294303 | 0 | 89 | 0 | 6 | 2 | 1 | 5' TCATCATCATCATCATCAT-CA 3' ||||||||||||||||||| || 3' TAGTAGTAGTAGTAGTAGTAGTACGTAAGAAG 5' |
1168 | Malus domestica | CATCTTCCTCTTCCTCTTCCT | alignment | plot | GSM880656_apple_deg_proc | MDP0000300629 | 0 | 124 | 0.04 | 12 | 0.8 | 3 | 5' CATCTTCCTCTTCCTCTTCCT 3' | ||o|||||||| |||o||| 3' AGAAGAAGGAGGAGAAGTAGAGGGAGTGGTAG 5' |
1169 | Malus domestica | GCTCTCTATGCTTCTGTCATC | alignment | plot | GSM880656_apple_deg_proc | MDP0000742828 | 1 | 440 | 0.03 | 7 | 3.5 | 4 | 5' GCTCTCTATGCTTCTGTCATC 3' ||||| | |||o||||o||| 3' TTTTCGAGATAAACGGAGACGGTAAGATACTC 5' |
1170 | Malus domestica | CATCTTCCTCTTCCTCTTCCT | alignment | plot | GSM880656_apple_deg_proc | MDP0000566422 | 2 | 1159 | 0.05 | 20 | 1.66667 | 2 | 5' CATCTTCCTCTTCCTCTTCCT 3' | ||||||||||||||||| | 3' AGAAGGAGAAGGAGAAGGAGAAG-AGGTTCAA 5' |
1171 | Malus domestica | GTGCCTGTCTCCCTGTATGCC | alignment | plot | GSM880656_apple_deg_proc | MDP0000900893 | 2 | 30 | 0.03 | 5 | 5 | 3.5 | 5' GTGCCTGTCTCCCTGTATGCC 3' |||||||| | ||||| |o|| 3' AGCCCACGGACA-AAGGACAGATGGCAATATG 5' |
1174 | Malus domestica | TCTTCCCAAGCCCGCCCATTCC | alignment | plot | GSM880656_apple_deg_proc | MDP0000305711 | 0 | 1054 | 0.02 | 93 | 23.25 | 4 | 5' TCTTCCCAAGCCCGCCCATTCC 3' |||| || || || |||||||| 3' CAGCAGAAAGGCTCAGGGGGGTAAGGGTGTTA 5' |
1175 | Malus domestica | GGAATCTTGATGATGCTGCA | alignment | plot | GSM880656_apple_deg_proc | MDP0000200319 | 0 | 1273 | 0 | 5 | 5 | 0.5 | 5' GGAATCTTGATGATGCTGCA 3' ||||||o||||||||||||| 3' CTCCCCTTAGGACTACTACGACGTCGTCTCTT 5' |
1176 | Malus domestica | TCTTCCCAAGCCCGCCCATTCC | alignment | plot | GSM880656_apple_deg_proc | MDP0000272830 | 0 | 625 | 0 | 93 | 23.25 | 4 | 5' TCTTCCCAAGCCCGCCCATTCC 3' |||| || || || |||||||| 3' CAGCAGAAAGGCTCAGGAGGGTAAGGGTGTTA 5' |
1177 | Malus domestica | GCTCTCTATGCTTCTGTCATC | alignment | plot | GSM880656_apple_deg_proc | MDP0000224116 | 2 | 1391 | 0.04 | 9 | 9 | 3 | 5' GCTCTCTATGCTTCTGTCATC 3' ||o|| ||||||o|| ||||| 3' TCTACGGGATATACGAGGA-AGTAGCATGTTC 5' |
1178 | Medicago truncatula | TTCCACAGCTTTCTTGAACTT | alignment | plot | GSM643817_GDN-4 | gi|13596348|gb|BG581284.1|BG581284 EST483017 GVN Medicago truncatula cDNA clone pGVN-64K10 5' end, mRNA sequence | 0 | 186 | 0.03 | 10 | 10 | 3.5 | 5' TTCCACAGCTTTCTTGAACTT 3' ||||||||||| |||||| o 3' TTTAAAGGTGTCGAA-GAACTTTCGACGGTAG 5' |
1179 | Medicago truncatula | TTTATTCTCAGTTTGTTGCTC | alignment | plot | GSM643817_GDN-4 | gi|8745860|gb|BE202597.1|BE202597 EST402619 KV1 Medicago truncatula cDNA clone pKV1-2A24, mRNA sequence | 1 | 517 | 0.02 | 4 | 0.571429 | 3 | 5' TTTATTCTCAGTTTGTTGCTC 3' ||||o|||||o| |||| ||| 3' AGGTAAATGAGAGTTATACAA-GAGAGCGTTG 5' |
1180 | Medicago truncatula | CGTTTAGGTCCCTTAACTTTA | alignment | plot | GSM643817_GDN-4 | gi|209562398|gb|GE345400.1|GE345400 MEUAN81TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence | 2 | 532 | 0.01 | 2 | 0.25 | 2 | 5' CGTTTAGGTCCCTTAACTTTA 3' |o||| |||||||||||||o| 3' TTCTGTAAA-CCAGGGAATTGAAGTGACGATC 5' |
1181 | Medicago truncatula | TCGATAAACCTCTGCATCCA | alignment | plot | GSM643817_GDN-4 | gi|11895969|gb|BF631811.1|BF631811 NF008E10DT1F1072 Drought Medicago truncatula cDNA clone NF008E10DT 5', mRNA sequence | 2 | 19 | 0.03 | 2 | 1 | 2.5 | 5' TCGATAAACCTCTGCATCCA 3' ||o|||||||||| ||||| 3' GAGAAGTTATTTGGAGA-GTAGGAAACAAAGA 5' |
1182 | Medicago truncatula | GGAATCTTGATGATTCTGCAC | alignment | plot | GSM643817_GDN-4 | gi|7643303|gb|AW736449.1|AW736449 EST332463 KV3 Medicago truncatula cDNA clone pKV3-13M16, mRNA sequence | 0 | 569 | 0 | 49 | 16.3333 | 3 | 5' GGAATCTTGATGATTCTGCAC 3' o|||||o||||||| ||||| 3' TACCTCTTAGGACTACTACGACGTCTTCTCTT 5' |
1183 | Medicago truncatula | TCTTCTTCTTCTTCTTGCACC | alignment | plot | GSM643817_GDN-4 | gi|11965315|gb|BE248055.2|BE248055 NF001A03DT1F1017 Drought Medicago truncatula cDNA clone NF001A03DT 5', mRNA sequence | 2 | 19 | 0.01 | 2 | 0.0869565 | 2 | 5' TCTTCTTCTTCTTCTTGCACC 3' ||||||||||||||||| | | 3' GTAGAGAAGAAGAAGAAGAAC-TAGATTCCTT 5' |
1184 | Medicago truncatula | TCTTCTTCTTCTTCTTGCACC | alignment | plot | GSM643817_GDN-4 | gi|22088722|gb|AJ498279.1|AJ498279 AJ498279 MTPOSE Medicago truncatula cDNA clone mt--acc955203a09, mRNA sequence | 2 | 76 | 0.03 | 2 | 0.0869565 | 2 | 5' TCTTCTTCTTCTTCTTGCACC 3' ||||||||||||||||| | | 3' GTAGAGAAGAAGAAGAAGAAC-TAGATTCCTT 5' |
1185 | Medicago truncatula | TGGAGAAGCAGGGCACGTGCA | alignment | plot | GSM643817_GDN-4 | gi|209563603|gb|GE344778.1|GE344778 MEUAG72TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence | 2 | 184 | 0.05 | 5 | 0.238095 | 3.5 | 5' TGGAGAAGCAGGGCACGTGCA 3' |o||||| ||o|||||o||| 3' CAAAATCTCTT-GTTCCGTGTACGACTGTTGT 5' |
1186 | Medicago truncatula | TGGAGAAGCAGGGCACGTGCA | alignment | plot | GSM643817_GDN-4 | gi|11915228|gb|BF650098.1|BF650098 NF087H02EC1F1026 Elicited cell culture Medicago truncatula cDNA clone NF087H02EC 5', mRNA seq | 0 | 422 | 0 | 22 | 5.5 | 2 | 5' TGGAGAAGCAGGGCACGTGCA 3' |||||||||||||||| ||| 3' TTGTACCTCTTCGTCCCGTGAACGAGTATAAG 5' |
1187 | Medicago truncatula | GGGCTTCTCTTTCTTGGCAGG | alignment | plot | GSM643817_GDN-4 | gi|11958943|gb|BE316474.2|BE316474 NF035G01LF1F1004 Developing leaf Medicago truncatula cDNA clone NF035G01LF 5', mRNA sequence | 1 | 328 | 0 | 2 | 0.181818 | 3 | 5' GGGCTTCTCTTTCTTGGCAGG 3' oo||||||||||||||| || 3' GAAGTTCGAAGAGAAAGAACCATCGTAGACCA 5' |
1188 | Medicago truncatula | TTCCACAGCTTTCTTGAACTT | alignment | plot | GSM643817_GDN-4 | gi|260523486|gb|GT140315.1|GT140315 METCV28TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence | 2 | 503 | 0 | 3 | 0.75 | 2 | 5' TTCCACAGCTTTCTTGAACTT 3' |||||||o|||o||||| ||| 3' GTTGAAGGTGTTGAAGGAACTAGAAACTATAC 5' |
1189 | Medicago truncatula | CGTCTTCATCATCATCACATT | alignment | plot | GSM643817_GDN-4 | gi|157979521|gb|EX527793.1|EX527793 MTGland_A033_2007-06-18/MTGlandA033_C04_014_1 Medicago truncatula A17 glandular trichome Med | 1 | 638 | 0.05 | 63 | 0.347713 | 3 | 5' CGTCTTCATCATCATCA-CATT 3' |o|| |||||||||||| |||o 3' AGTAGTAGTAGTAGTAGTAGTAGTAGTAATAA 5' |
1190 | Medicago truncatula | TGAAGCTGCCAGCATGATCTA | alignment | plot | GSM643817_GDN-4 | gi|11965303|gb|BE247883.2|BE247883 NF023B01DT1F1010 Drought Medicago truncatula cDNA clone NF023B01DT 5', mRNA sequence | 0 | 326 | 0.04 | 55 | 11 | 4 | 5' TGAAGCTGCCAGCATGATCTA 3' ||||||||||| |||||| 3' TTTATGTTCGACGGTCGGACTAGAATGTCCCA 5' |
1191 | Medicago truncatula | TTACCTATTCCACCAATTCCAT | alignment | plot | GSM643817_GDN-4 | gi|157983461|gb|EX531733.1|EX531733 MTGland_B027_2007-05-25/MTGlandB027_E09_036_1 Medicago truncatula A17 glandular trichome Med | 0 | 68 | 0.03 | 497 | 497 | 4 | 5' TTACCTATTCCACCAATTCCAT 3' ||||| ||||| || |||||| 3' CCGAAATGGTTAAGGAGGGTAAGGTTGTAATG 5' |
1192 | Medicago truncatula | TCCAAAGGGATCGCATTGTTT | alignment | plot | GSM643817_GDN-4 | gi|10518586|gb|BE940827.1|BE940827 EST420406 MGHG Medicago truncatula cDNA clone pMGHG-2A7, mRNA sequence | 2 | 322 | 0 | 3 | 0.375 | 0 | 5' TCCAAAGGGATCGCATTGTTT 3' ||||||||||||||||||||| 3' CTGTAGGTTTCCCTAGCGTAACAAAGTATGAA 5' |
1193 | Medicago truncatula | ATTATTGTCAACGTGACTAG | alignment | plot | GSM643817_GDN-4 | gi|83665229|gb|DW015637.1|DW015637 EST1224598 MTY Medicago truncatula cDNA clone MTYA782, mRNA sequence | 2 | 652 | 0.03 | 2 | 2 | 2.5 | 5' ATTATTGTCAACGTGACTAG 3' ||| |||o||||o|o||||| 3' TCTCTAA-AACGGTTGTATTGATCGTATCTAT 5' |
1194 | Medicago truncatula | TTCCACAGCTTTCTTGAACTG | alignment | plot | GSM643817_GDN-4 | gi|209563259|gb|GE346711.1|GE346711 MEUAZ47TFB JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence | 0 | 592 | 0.02 | 5 | 1.25 | 3 | 5' TTCCACA-GCTTTCTTGAACTG 3' o||| || ||||||o||||||| 3' AACGAGGCGTACGAAAGGACTTGACCGAAGAG 5' |
1195 | Medicago truncatula | TAAGACATCAGCTATAAGCTA | alignment | plot | GSM643817_GDN-4 | gi|27522998|gb|CA990104.1|CA990104 EST643612 GESD Medicago truncatula cDNA clone GESD-27F23, mRNA sequence | 2 | 253 | 0.05 | 3 | 0.428571 | 3 | 5' TAAGACATCAGCTATAAGCTA 3' |||| ||o|| ||||||||o| 3' ACAGATTCGGTGGT-GATATTCGGTCTTGTTG 5' |
1196 | Medicago truncatula | TACATTTTCTTCTTTATGTCT | alignment | plot | GSM643817_GDN-4 | gi|11935751|gb|BE325297.2|BE325297 NF120F01ST1F1013 Developing stem Medicago truncatula cDNA clone NF120F01ST 5', mRNA sequence | 0 | 420 | 0.02 | 2 | 2 | 3 | 5' TACATTTTCTTCTTTATGTCT 3' | ||||||||||o||||||o 3' TCTGTTATAAAAGAAGAGATACAGGGTTTGGA 5' |
1197 | Medicago truncatula | ATATAGCATCGTGAGCAATCA | alignment | plot | GSM643817_GDN-4 | gi|9679875|gb|AL380123.1|AL380123 MtBB50E12R1 MtBB Medicago truncatula cDNA clone MtBB50E12 T7, mRNA sequence | 2 | 377 | 0.03 | 3 | 0.428571 | 2.5 | 5' ATATAGCATCGTGAGCAATCA 3' |||o|||||| |||||||| | 3' TCAATATGTCGTAG-ACTCGTTATTGTTACCG 5' |
1198 | Medicago truncatula | TCTTCTTCTTCTTCTTGCACC | alignment | plot | GSM643817_GDN-4 | gi|11901900|gb|BF637742.1|BF637742 NF040D12PL1F1096 Phosphate starved leaf Medicago truncatula cDNA clone NF040D12PL 5', mRNA se | 2 | 22 | 0.01 | 2 | 0.0869565 | 2 | 5' TCTTCTTCTTCTTCTTGCACC 3' ||||||||||||||||| | | 3' GTAGAGAAGAAGAAGAAGAAC-TAGATTCGAG 5' |
1199 | Medicago truncatula | ATATAGCATCGTGAGCAATCA | alignment | plot | GSM643817_GDN-4 | gi|89245650|gb|DY617437.1|DY617437 AC3425 NOLLY Medicago truncatula cDNA 5', mRNA sequence | 2 | 769 | 0.02 | 3 | 0.428571 | 2.5 | 5' ATATAGCATCGTGAGCAATCA 3' |||o|||||| |||||||| | 3' TCAATATGTCGTAG-ACTCGTTATTGGTTACC 5' |
1200 | Medicago truncatula | TCTTCTTCTTCTTCTTGCACC | alignment | plot | GSM643817_GDN-4 | gi|7560622|gb|AW685886.1|AW685886 NF031D10NR1F1000 Nodulated root Medicago truncatula cDNA clone NF031D10NR 5', mRNA sequence | 0 | 559 | 0.05 | 11 | 1.375 | 3.5 | 5' TCTTCTTCTTCTTCTTGCACC 3' o||||o|| |||||o| |||| 3' AGGAGGAAGGAG-AGAAGGAGGTGGTGGCGGC 5' |
1201 | Medicago truncatula | TGATACACTAGCACGGATCAC | alignment | plot | GSM643817_GDN-4 | gi|57567314|gb|CX540289.1|CX540289 s13dNF68C08GS065_463852 Germinating Seed Medicago truncatula cDNA, mRNA sequence | 0 | 207 | 0 | 14 | 0.7 | 3.5 | 5' TGATACACTAGCACGGATCAC 3' ||||||||o||| |o| o||| 3' TGGAACTATGTGGTCG-GTCGGGTGTACAGCA 5' |
1202 | Medicago truncatula | TTAATCTAGGAAATTACACTCG | alignment | plot | GSM643817_GDN-4 | gi|57501596|gb|CX532877.1|CX532877 s13dNF46C06MJ038_272036 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago trunc | 2 | 328 | 0 | 13 | 0.590909 | 1 | 5' TTAATCTAGGAAATTACACTCG 3' |||||| ||||||||||||||| 3' GTTAAATTAGTTCCTTTAATGTGAGCTACGTC 5' |
1203 | Medicago truncatula | TTTATTCTCAGTTTGTTGCTC | alignment | plot | GSM643817_GDN-4 | gi|57566747|gb|CX539722.1|CX539722 s13dNF67D06GS046_462714 Germinating Seed Medicago truncatula cDNA, mRNA sequence | 0 | 155 | 0.04 | 4 | 0.363636 | 3.5 | 5' TTTATTC-TCAGTTTGTTGCTC 3' |||||o| ||| |||| ||||| 3' TAGAAATAGGAAGTGAAACCACGAGGTGAAGT 5' |
1204 | Medicago truncatula | TGCCTGGCTCCCTGTATGCCA | alignment | plot | GSM643817_GDN-4 | gi|20286000|gb|BQ148941.1|BQ148941 NF084G06FL1F1052 Developing flower Medicago truncatula cDNA clone NF084G06FL 5', mRNA sequenc | 0 | 279 | 0 | 40 | 40 | 2 | 5' TGCCTGGCTCCCTGTATGCCA 3' ||||||||||||||||||| 3' TCGTACGGACCGAGGGACATACGAACTACGTT 5' |
1205 | Medicago truncatula | TTGGACTGAAGGGAGCTCCC | alignment | plot | GSM643817_GDN-4 | gi|14877734|gb|BI270282.1|BI270282 NF008H08FL1F1076 Developing flower Medicago truncatula cDNA clone NF008H08FL 5', mRNA sequenc | 0 | 610 | 0.01 | 10 | 2.5 | 3 | 5' TTGGACTGAAGGGAGCTCCC 3' ||||||||||||| | ||| 3' ACTTAACCTGACTTCCCAGG-GGGATAATATT 5' |
1206 | Medicago truncatula | TGCCAAAGGAGATTTGCCCTG | alignment | plot | GSM643817_GDN-4 | gi|13783492|gb|BG648380.1|BG648380 EST509999 HOGA Medicago truncatula cDNA clone pHOGA-19J15 5' end, mRNA sequence | 2 | 39 | 0 | 6 | 1.5 | 1.5 | 5' TGCCAAAGGAGATTTGCCCTG 3' ||||||||||||||||||| o 3' ATTTACGGTTTCCTCTAAACGGGTTGTCCTGT 5' |
1207 | Medicago truncatula | TTAATCTAGGAAATTACACTCG | alignment | plot | GSM643817_GDN-4 | gi|57493540|gb|CX524821.1|CX524821 s13dNF11D10AT090_478276 Aphid-Infected Shoots Medicago truncatula cDNA, mRNA sequence | 0 | 200 | 0.05 | 42 | 21 | 4 | 5' TTAATCTAGGAAATTACACTCG 3' |||||| |||||||||| | | 3' GATTAATTAGTTCCTTTAATGCCA-CTATCTA 5' |
1208 | Medicago truncatula | TTAATCTAGGAAAATACGGTG | alignment | plot | GSM643817_GDN-4 | gi|57493540|gb|CX524821.1|CX524821 s13dNF11D10AT090_478276 Aphid-Infected Shoots Medicago truncatula cDNA, mRNA sequence | 0 | 200 | 0 | 42 | 21 | 2 | 5' TTAATCTAGGAAAATACGGTG 3' |||||| |||||| ||||||| 3' GATTAATTAGTTCCTTTAATGCCACTATCTAT 5' |
1209 | Medicago truncatula | TTCCACAGCTTTCTTGAACTT | alignment | plot | GSM643817_GDN-4 | gi|151386367|gb|EV256245.1|EV256245 MTYCU62TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence | 0 | 305 | 0.05 | 14 | 7 | 3.5 | 5' TTCCACA-GCTTTCTTGAACTT 3' |||| || ||||||o|||||| 3' AAGAAGGCGTACGAAAGGACTTGACAAAAGAA 5' |
1210 | Medicago truncatula | TGTTATTTCATCGATTTTGTTG | alignment | plot | GSM643817_GDN-4 | gi|209563606|gb|GE344781.1|GE344781 MEUAG75TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence | 1 | 659 | 0.05 | 8 | 1 | 4 | 5' TGTTATTTCATCGATTTTGTTG 3' | |o| ||||||o||||oo||| 3' AGTTAAAGT-AAGTAGTTAAAGTAACGAAGTT 5' |
1211 | Medicago truncatula | TTGAGCCGTGCCAATATCACG | alignment | plot | GSM643817_GDN-4 | gi|33106441|gb|CF069782.1|CF069782 EST670503 MTUS Medicago truncatula cDNA clone MTUS-24C6, mRNA sequence | 0 | 92 | 0 | 308 | 154 | 2.5 | 5' TTGAGCCGTGCCAATATCACG 3' ||||||||o||||||||| | 3' CACTAACTCGGCGCGGTTATAGGGAACGCGAA 5' |
1212 | Medicago truncatula | TAATCTGCATCCTGAGGTTTA | alignment | plot | GSM643817_GDN-4 | gi|161108073|gb|EY476819.1|EY476819 METAV56TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence | 0 | 267 | 0 | 147 | 49 | 2 | 5' TAATCTGCATCCTGAGGTTTA 3' |||||||||||||||||| | 3' TAATATTAGACGTAGGACTCCATTTCCAAGAA 5' |
1213 | Medicago truncatula | TGATTGAGTCGTGCCAATATC | alignment | plot | GSM643817_GDN-4 | gi|33106441|gb|CF069782.1|CF069782 EST670503 MTUS Medicago truncatula cDNA clone MTUS-24C6, mRNA sequence | 2 | 95 | 0 | 4 | 2 | 1 | 5' TGATTGAGTCGTGCCAATATC 3' ||||||||o||o||||||||| 3' GACCACTAACTCGGCGCGGTTATAGGGAACGC 5' |
1214 | Medicago truncatula | TTCCACAGCTTTCTTGAACTG | alignment | plot | GSM643817_GDN-4 | gi|7560553|gb|AW685817.1|AW685817 NF030F06NR1F1000 Nodulated root Medicago truncatula cDNA clone NF030F06NR 5', mRNA sequence | 0 | 616 | 0.03 | 15 | 1.36364 | 3.5 | 5' TTCCACAGCTTTCTTGAACTG 3' | ||||||||||||| | |o| 3' ATCGACGGTGTCGAAAGAAGT-GGCCTCGAAA 5' |
1215 | Medicago truncatula | TGGAGAAGCAGGGCACGTGCA | alignment | plot | GSM643817_GDN-4 | gi|20293470|gb|BQ156411.1|BQ156411 NF092E09IR1F1071 Irradiated Medicago truncatula cDNA clone NF092E09IR 5', mRNA sequence | 2 | 124 | 0.01 | 5 | 0.238095 | 2.5 | 5' TGGAGAAGCAGGGCACGTGCA 3' |o||||| ||o|||||o|||| 3' CAAAATCTCTT-GTTCCGTGTACGTCTATCGT 5' |
1216 | Medicago truncatula | TTTTGGGACGGAGGGAGTATA | alignment | plot | GSM643817_GDN-4 | gi|157982721|gb|EX530993.1|EX530993 MTGland_B017_2007-05-25/MTGlandB017_H11_041_1 Medicago truncatula A17 glandular trichome Med | 2 | 115 | 0 | 2 | 0.666667 | 2.5 | 5' TTTTGGGACGGAGGGAGTATA 3' ||||||||||||||||||o 3' ATGTTAAACCCTGCCTCCCTCATGAGGGAATT 5' |
1217 | Medicago truncatula | TGCCTGGCTCCCTGTATGCCA | alignment | plot | GSM643817_GDN-4 | gi|14883236|gb|BI273231.1|BI273231 NF097C02FL1F1017 Developing flower Medicago truncatula cDNA clone NF097C02FL 5', mRNA sequenc | 0 | 41 | 0 | 188 | 188 | 0.5 | 5' TGCCTGGCTCCCTGTATGCCA 3' ||||||||||||||o|||||| 3' TAGTACGGACCGAGGGACGTACGGTCGTCCTT 5' |
1218 | Medicago truncatula | TCCAAAGGGATCGCATTGTTT | alignment | plot | GSM643817_GDN-4 | gi|151388508|gb|EV258379.1|EV258379 MTYDJ65TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence | 0 | 650 | 0 | 17 | 8.5 | 0.5 | 5' TCCAAAGGGATCGCATTGTTT 3' |||||||||||||||||||o| 3' CTGTAGGTTTCCCTAGCGTAACAGAGGTTGAA 5' |
1219 | Medicago truncatula | TCCAAAGGGATCGCATTGATC | alignment | plot | GSM643817_GDN-4 | gi|151388508|gb|EV258379.1|EV258379 MTYDJ65TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence | 0 | 650 | 0 | 17 | 8.5 | 1 | 5' TCCAAAGGGATCGCATTGATC 3' |||||||||||||||||| || 3' CTGTAGGTTTCCCTAGCGTAAC-AGAGGTTGA 5' |
1220 | Medicago truncatula | ATGCATGTGCATGTGCATCTG | alignment | plot | GSM643817_GDN-4 | gi|14982947|gb|BI308620.1|BI308620 EST530030 GPOD Medicago truncatula cDNA clone pGPOD-7K16 5' end, mRNA sequence | 1 | 807 | 0.05 | 3 | 3 | 4 | 5' ATGCATGTGCATGTGCATCTG 3' ||| ||o|o|||o||||o|oo 3' TATTTACATATATGTATACGTGGGTAACACTG 5' |
1221 | Medicago truncatula | AACTTAAATATGTTTTCAGTCC | alignment | plot | GSM643817_GDN-4 | gi|11906327|gb|BF642169.1|BF642169 NF017C04IN1F1034 Insect herbivory Medicago truncatula cDNA clone NF017C04IN 5', mRNA sequence | 2 | 304 | 0.01 | 4 | 0.333333 | 2.5 | 5' AACTTAAATATGTTTTCAGTCC 3' |||| |||o|| |||||||||| 3' ATATTTGACTTTGTAAAAAAGTCAGGATCCTA 5' |
1222 | Medicago truncatula | AGTTTTCCTCGGTAGTTAACT | alignment | plot | GSM643817_GDN-4 | gi|6605651|gb|AW257394.1|AW257394 EST305531 KV2 Medicago truncatula cDNA clone KV2-9H1, mRNA sequence | 0 | 476 | 0.03 | 5 | 1.25 | 3.5 | 5' AGTTTTCCTCGGTAGTTAACT 3' ||o|o| |||o|o||o||||| 3' TAACTCGAGA-GAGTCGTCGATTGAACAGAAG 5' |
1223 | Medicago truncatula | TTACCTATTCCACCAATTCCAT | alignment | plot | GSM643817_GDN-4 | gi|9685795|gb|AL386044.1|AL386044 MtBC32C04F1 MtBC Medicago truncatula cDNA clone MtBC32C04 T3, mRNA sequence | 0 | 13 | 0.01 | 135 | 1.73193 | 3 | 5' TTACCTATTCCACCAATTCCAT 3' oo||||| |||||||||o|||o 3' TAGTGGTGGATCAGGTGGTTAGGGTG 5' |
1224 | Medicago truncatula | TGGAGAAGCAGGGCACATGCT | alignment | plot | GSM643817_GDN-4 | gi|57485828|gb|CX517302.1|CX517302 s13dNF07C11VI086_399623 Virus-Infected Leaves Medicago truncatula cDNA, mRNA sequence | 2 | 19 | 0 | 5 | 0.238095 | 2 | 5' TGGAGAAGCAGGGCACATGCT 3' |o||||| ||o|||||||||| 3' CAAAATCTCTT-GTTCCGTGTACGACTGTTGT 5' |
1225 | Medicago truncatula | TCAAGATGCTTGGGTTTTGGA | alignment | plot | GSM643817_GDN-4 | gi|151387296|gb|EV257167.1|EV257167 MTYD529TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence | 0 | 404 | 0.01 | 2 | 2 | 4 | 5' TCAAGATGCTTGGGTTTTGGA 3' || ||| |||||| oo||||| 3' CCAGAGATCTTCGAACCAGGAACCTTATGAAA 5' |
1226 | Medicago truncatula | TCCTCGGTACCTATGTTGAT | alignment | plot | GSM643817_GDN-4 | gi|10699935|gb|BE999659.1|BE999659 EST431382 GVSN Medicago truncatula cDNA clone pGVSN-24M7, mRNA sequence | 0 | 546 | 0.01 | 12 | 1.71429 | 3.5 | 5' TCCTCGGTACCTATGTTGAT 3' ||| |o|||||o ||||o|| 3' TTAAAGGTGTCATGGGAACAATTAGAAACACC 5' |
1227 | Medicago truncatula | TGTTATTTCATCGATTTTGTTG | alignment | plot | GSM643817_GDN-4 | gi|161109822|gb|EY478525.1|EY478525 METBF24TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence | 1 | 764 | 0.04 | 8 | 1 | 4 | 5' TGTTATTTCATCGATTTTGTTG 3' | |o| ||||||o||||oo||| 3' AGTTAAAGT-AAGTAGTTAAAGTAACGAAGTT 5' |
1228 | Medicago truncatula | TTTTGGGACGGAGGGAGTATA | alignment | plot | GSM643817_GDN-4 | gi|157979068|gb|EX527340.1|EX527340 MTGland_A027_2007-06-13/MTGlandA027_E06_020_1 Medicago truncatula A17 glandular trichome Med | 2 | 139 | 0 | 2 | 0.5 | 1 | 5' TTTTGGGACGGAGGGAGTATA 3' |||||||||||||||||||| 3' ATGTTAAACCCTGCCTCCCTCATATTATATAA 5' |
1229 | Medicago truncatula | ATTTGGGACGGAGGGAGTAAT | alignment | plot | GSM643817_GDN-4 | gi|157979068|gb|EX527340.1|EX527340 MTGland_A027_2007-06-13/MTGlandA027_E06_020_1 Medicago truncatula A17 glandular trichome Med | 2 | 139 | 0 | 2 | 0.5 | 1 | 5' ATTTGGGACGGAGGGAGTAAT 3' ||||||||||||||||||| | 3' ATGTTAAACCCTGCCTCCCTCAT-ATTATATA 5' |
1230 | Medicago truncatula | TGCCAAAGGAGATTTGCCCTG | alignment | plot | GSM643817_GDN-4 | gi|13781151|gb|BG646039.1|BG646039 EST507658 KV3 Medicago truncatula cDNA clone pKV3-48E12 5' end, mRNA sequence | 2 | 63 | 0 | 6 | 1.5 | 1.5 | 5' TGCCAAAGGAGATTTGCCCTG 3' ||||||||||||||||||| o 3' ATTTACGGTTTCCTCTAAACGGGTTGTCCTGT 5' |
1231 | Medicago truncatula | CGTCTTCATCATCATCACATT | alignment | plot | GSM643817_GDN-4 | gi|157982941|gb|EX531213.1|EX531213 MTGland_B020_2007-05-15/MTGlandB020__G12_042_1 Medicago truncatula A17 glandular trichome Me | 1 | 52 | 0.02 | 2 | 2 | 2.5 | 5' CGTCTTCATCATCATCACATT 3' || ||||||||||o|||||| 3' GTCGCCA-AAGTAGTAGTGGTGTAAGCGATAA 5' |
1232 | Medicago truncatula | TTAATCTAGGAAATTACACTCG | alignment | plot | GSM643817_GDN-4 | gi|11962065|gb|BE317535.2|BE317535 NF051B08LF1F1061 Developing leaf Medicago truncatula cDNA clone NF051B08LF 5', mRNA sequence | 0 | 336 | 0 | 13 | 0.590909 | 1 | 5' TTAATCTAGGAAATTACACTCG 3' |||||| ||||||||||||||| 3' GTTAAATTAGTTCCTTTAATGTGAGCTACGTC 5' |
1233 | Medicago truncatula | AGATTGAGACTTGTATGGCTT | alignment | plot | GSM643817_GDN-4 | gi|14881697|gb|BI272404.1|BI272404 NF024H12FL1F1103 Developing flower Medicago truncatula cDNA clone NF024H12FL 5', mRNA sequenc | 2 | 132 | 0.04 | 5 | 0.714286 | 3 | 5' AGATTGAGACTTGTATGGCTT 3' |||| || |||||||||| || 3' CACCTCTACCTATGAACATACCAAAAAATCCA 5' |
1234 | Medicago truncatula | TTAATCTAGGAAATTACACTCG | alignment | plot | GSM643817_GDN-4 | gi|209562076|gb|GE343848.1|GE343848 MEUA594TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence | 0 | 336 | 0 | 29 | 29 | 3 | 5' TTAATCTAGGAAATTACACTCG 3' |||||| |o|||||o||||| | 3' AAAAAATTAGTTTCTTTAGTGTGAACTCAACT 5' |
1235 | Medicago truncatula | TGATAGTGTCAACTAGTACAG | alignment | plot | GSM643817_GDN-4 | gi|157982243|gb|EX530515.1|EX530515 MTGland_A068_2007-06-27/MTGlandA068_A07_032_1 Medicago truncatula A17 glandular trichome Med | 0 | 663 | 0 | 23 | 23 | 0.5 | 5' TGATAGTGTCAACTAGTACAG 3' |||||||||||||||o||||| 3' ATAAACTATCACAGTTGATTATGTCTTTTAAA 5' |
1236 | Medicago truncatula | TTGCTTGGTGCTGGTCGGGAA | alignment | plot | GSM643817_GDN-4 | gi|7717507|gb|AW773594.1|AW773594 EST332580 KV3 Medicago truncatula cDNA clone pKV3-15A19, mRNA sequence | 0 | 279 | 0.02 | 41 | 13.6667 | 4 | 5' TTGCTTGGTGCTGGTCGGGAA 3' ||||||||||| | ||||| 3' CCCCAACGAACCACGTCGAGCCCCATACTCCC 5' |
1237 | Medicago truncatula | ATATAGCATCGTGAGCAATCA | alignment | plot | GSM643817_GDN-4 | gi|57486979|gb|CX518453.1|CX518453 s13dNF32B09VI077_423739 Virus-Infected Leaves Medicago truncatula cDNA, mRNA sequence | 2 | 526 | 0.03 | 3 | 0.428571 | 2.5 | 5' ATATAGCATCGTGAGCAATCA 3' |||o|||||| |||||||| | 3' TCAATATGTCGTAG-ACTCGTTATTGTTACCG 5' |
1238 | Medicago truncatula | TTGACAGAAGATAGAGGGCAC | alignment | plot | GSM643817_GDN-4 | gi|209566340|gb|GE347410.1|GE347410 MEUB696TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence | 0 | 171 | 0 | 124 | 41.3333 | 0.5 | 5' TTGACAGAAGATAGAGGGCAC 3' ||||||||||||||||o|||| 3' TCACAACTGTCTTCTATCTCTCGTGTTGGGCT 5' |
1239 | Medicago truncatula | TGAGCCAGGATGGCTTGCCGG | alignment | plot | GSM643817_GDN-4 | gi|9056606|gb|BE240422.1|BE240422 EST404471 MHRP- Medicago truncatula cDNA clone pMHRP-45I5, mRNA sequence | 0 | 26 | 0 | 31 | 31 | 3.5 | 5' TGAGCC-AGGATGGCTTGCCGG 3' |||||| ||||||o |||||oo 3' GCAACTCGGTTCCTACTAAACGGTTTCATTAC 5' |
1240 | Medicago truncatula | TGAGCCAAAGATGACTTGCCG | alignment | plot | GSM643817_GDN-4 | gi|9056606|gb|BE240422.1|BE240422 EST404471 MHRP- Medicago truncatula cDNA clone pMHRP-45I5, mRNA sequence | 2 | 27 | 0.01 | 5 | 5 | 2.5 | 5' TGAGCCAAAGATGACTTGCCG 3' |||||||| ||||| |||||o 3' TGCAACTCGGTTCCTACTAAACGGTTTCATTA 5' |
1241 | Medicago truncatula | TGACAGAAGAGAGTGAGCAC | alignment | plot | GSM643817_GDN-4 | gi|209566340|gb|GE347410.1|GE347410 MEUB696TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence | 2 | 170 | 0.01 | 2 | 1 | 2 | 5' TGACAGAAGAGAGTGAGCAC 3' |||||||||| || |||||| 3' CACAACTGTCTTCTATCTCTCGTGTTGGGCTC 5' |
1242 | Medicago truncatula | TTACCGATTCCACCCATTCCTA | alignment | plot | GSM643817_GDN-4 | gi|14879956|gb|BI271442.1|BI271442 NF051F06FL1F1059 Developing flower Medicago truncatula cDNA clone NF051F06FL 5', mRNA sequenc | 0 | 62 | 0.01 | 12 | 12 | 4 | 5' TTACCGATTCCACCCATTCCTA 3' o| ||o|||||| |||||| || 3' AATGGAAGGTTAAGGTAGGTAAG-ATTTTTGG 5' |
1243 | Medicago truncatula | ATACTCCCTCCGTCTCAAATT | alignment | plot | GSM643817_GDN-4 | gi|27404054|gb|CA917124.1|CA917124 EST641271 GPOD Medicago truncatula cDNA clone GPOD-35O19, mRNA sequence | 2 | 296 | 0.01 | 2 | 2 | 2.5 | 5' ATACTCCCTCCGTCTCAAATT 3' ||||| |||| o||||||||| 3' TAGGTATGA-GGAGTTAGAGTTTAACAAGGCA 5' |
1244 | Medicago truncatula | TTAATCTAGGAAATTACACTCG | alignment | plot | GSM643817_GDN-4 | gi|14870189|gb|BI266242.1|BI266242 NF089D06IN1F1058 Insect herbivory Medicago truncatula cDNA clone NF089D06IN 5', mRNA sequence | 0 | 330 | 0 | 13 | 0.590909 | 3 | 5' TTAATCTAGGAAATTACACTCG 3' |||||| ||| ||| ||||||| 3' GTTAAATTAGTTCCATTANTGTGAGCTACGTC 5' |
1245 | Medicago truncatula | TGCCAAAGGAGATTTGCCCTG | alignment | plot | GSM643817_GDN-4 | gi|20281110|gb|BQ144051.1|BQ144051 NF028G06DT1F1049 Drought Medicago truncatula cDNA clone NF028G06DT 5', mRNA sequence | 2 | 167 | 0 | 6 | 1.5 | 1.5 | 5' TGCCAAAGGAGATTTGCCCTG 3' ||||||||||||||||||| o 3' ATTTACGGTTTCCTCTAAACGGGTTGTCCTGT 5' |
1246 | Medicago truncatula | TTCCACAGCTTTCTTGAACTT | alignment | plot | GSM643817_GDN-4 | gi|8172992|gb|AW981431.1|AW981431 EST392584 DSIL Medicago truncatula cDNA clone pDSIL-16F7, mRNA sequence | 0 | 573 | 0.03 | 357 | 178.5 | 3 | 5' TTCCACA-GCTTTCTTGAACTT 3' ||||||| |||||||||||| 3' ACTAAGGTGTCCGAAAGAACTTGCCAACGCCG 5' |
1247 | Medicago truncatula | TGTTATTTCATCGATTTTGTTG | alignment | plot | GSM643817_GDN-4 | gi|151386640|gb|EV256518.1|EV256518 MTYCX85TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence | 1 | 62 | 0.01 | 2 | 2 | 3.5 | 5' TGTTATTTCATCGATTTTGTTG 3' |||| ||o||||| ||||||| 3' AACAACAAGAAGGTAGCAAAAACAAACTAAGA 5' |
1248 | Medicago truncatula | TTAATCTAGGAAATTACACTCG | alignment | plot | GSM643817_GDN-4 | gi|20292305|gb|BQ155246.1|BQ155246 NF078C11IR1F1086 Irradiated Medicago truncatula cDNA clone NF078C11IR 5', mRNA sequence | 1 | 224 | 0 | 2 | 1 | 2.5 | 5' TTAATCTAGGAAATTACACTCG 3' |||||| |o||||||||||| | 3' CAAAAATTAGTTTCTTTAATGTGAACATTAAC 5' |
1249 | Medicago truncatula | TTGGACTGAAGGGAGCTCCC | alignment | plot | GSM643817_GDN-4 | gi|83664945|gb|DW015353.1|DW015353 EST1224314 MTY Medicago truncatula cDNA clone MTYA406, mRNA sequence | 0 | 565 | 0 | 9 | 9 | 3 | 5' TTGGACTGAAGGGAGCTCCC 3' o|||||||||||| | o||| 3' CATTGACCTGACTTCCC-CAGGGGAGACTCAT 5' |
1250 | Medicago truncatula | TTACCTATTCCACCAATTCCAT | alignment | plot | GSM643817_GDN-4 | gi|209563266|gb|GE343973.1|GE343973 MEUA743TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence | 0 | 360 | 0.01 | 135 | 1.73193 | 3 | 5' TTACCTATTCCACCAATTCCAT 3' oo||||| |||||||||o|||o 3' TAGTGGTGGATCAGGTGGTTAGGGTGGACTAG 5' |
1251 | Medicago truncatula | CGTCTTCATCATCATCACATT | alignment | plot | GSM643817_GDN-4 | gi|14879629|gb|BI271284.1|BI271284 NF014D03FL1F1029 Developing flower Medicago truncatula cDNA clone NF014D03FL 5', mRNA sequenc | 1 | 56 | 0.05 | 63 | 0.347713 | 3 | 5' CGTCTTCATCATCATCA-CATT 3' |o|| |||||||||||| |||o 3' AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAG 5' |
1252 | Medicago truncatula | CGTCTTCATCATCATCACATT | alignment | plot | GSM643817_GDN-4 | gi|14879629|gb|BI271284.1|BI271284 NF014D03FL1F1029 Developing flower Medicago truncatula cDNA clone NF014D03FL 5', mRNA sequenc | 1 | 59 | 0.05 | 63 | 0.347713 | 3 | 5' CGTCTTCATCATCATCA-CATT 3' |o|| |||||||||||| |||o 3' AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAG 5' |
1253 | Medicago truncatula | TTACCGATTCCACCCATTCCTA | alignment | plot | GSM643817_GDN-4 | gi|14879902|gb|BI271414.1|BI271414 NF050F09FL1F1079 Developing flower Medicago truncatula cDNA clone NF050F09FL 5', mRNA sequenc | 0 | 176 | 0 | 25 | 25 | 3 | 5' TTACCGATTCCACCCATTCCTA 3' || ||o||||||||||| ||o| 3' GATAAAAGGTTAAGGTGGGTACGGGTTTCCGT 5' |
1254 | Medicago truncatula | GGAATCTTGATGATTCTGCAC | alignment | plot | GSM643817_GDN-4 | gi|13602943|gb|BG587879.1|BG587879 EST489654 KV3 Medicago truncatula cDNA clone pKV3-13M16 5' end, mRNA sequence | 0 | 559 | 0 | 49 | 16.3333 | 3 | 5' GGAATCTTGATGATTCTGCAC 3' o|||||o||||||| ||||| 3' TACCTCTTAGGACTACTACGACGTCTTCTCTT 5' |
1255 | Medicago truncatula | TACAATTCCTTAGGTGCTTTT | alignment | plot | GSM643817_GDN-4 | gi|209561715|gb|GE346021.1|GE346021 MEUAU81TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence | 0 | 604 | 0.03 | 3 | 0.75 | 4 | 5' TACAATTCCTTAGGTGCTTTT 3' | ||||||||o| || ||o|| 3' CCGAAAGTTAAGGAGTACA-GAGAAGGAACAC 5' |
1256 | Medicago truncatula | TGCCAAAGGAGATTTGCCCTG | alignment | plot | GSM643817_GDN-4 | gi|13779528|gb|BG644416.1|BG644416 EST506035 KV3 Medicago truncatula cDNA clone pKV3-37A6 5' end, mRNA sequence | 0 | 156 | 0 | 35 | 35 | 1.5 | 5' TGCCAAAGGAGATTTGCCCTG 3' ||||||||o|||||||||| | 3' GACTACGGTTTCTTCTAAACGGG-CGGTCCTA 5' |
1257 | Medicago truncatula | TGCCAAAGGAGAGTTGCCC | alignment | plot | GSM643817_GDN-4 | gi|13779528|gb|BG644416.1|BG644416 EST506035 KV3 Medicago truncatula cDNA clone pKV3-37A6 5' end, mRNA sequence | 0 | 156 | 0 | 35 | 35 | 1.5 | 5' TGCCAAAGGAGAGTTGCCC 3' ||||||||o||| |||||| 3' GACTACGGTTTCTTCTAAACGGGCGGTCCTAT 5' |
1258 | Medicago truncatula | TTTTGGGACGGAGGGAGTATA | alignment | plot | GSM643817_GDN-4 | gi|157980308|gb|EX528580.1|EX528580 MTGland_A043_2007-05-31/MTGlandA043_E06_020_1 Medicago truncatula A17 glandular trichome Med | 0 | 672 | 0 | 2 | 0.5 | 1 | 5' TTTTGGGACGGAGGGAGTATA 3' |||||||||||||||||||| 3' ATGTTAAACCCTGCCTCCCTCATATTCACTTC 5' |
1259 | Medicago truncatula | ATTTGGGACGGAGGGAGTAAT | alignment | plot | GSM643817_GDN-4 | gi|157980308|gb|EX528580.1|EX528580 MTGland_A043_2007-05-31/MTGlandA043_E06_020_1 Medicago truncatula A17 glandular trichome Med | 0 | 672 | 0 | 2 | 0.5 | 1 | 5' ATTTGGGACGGAGGGAGTAAT 3' ||||||||||||||||||| | 3' ATGTTAAACCCTGCCTCCCTCAT-ATTCACTT 5' |
1260 | Medicago truncatula | TTGGATTGAAGGGAGCTCT | alignment | plot | GSM643817_GDN-4 | gi|57567005|gb|CX539980.1|CX539980 s13dNF43D07GS058_463232 Germinating Seed Medicago truncatula cDNA, mRNA sequence | 0 | 611 | 0.05 | 10 | 2.5 | 3.5 | 5' TTGGATTGAAGGGAGCTCT 3' |||||o||||||| |o|o 3' ACTTAACCTGACTTCCCAGGGGGATAATATTG 5' |
1261 | Medicago truncatula | TTCCACAGCTTTCTTGAACTT | alignment | plot | GSM643817_GDN-4 | gi|27233382|gb|CA859018.1|CA859018 EST636273 GLSD Medicago truncatula cDNA clone pGLSD-39B20, mRNA sequence | 0 | 225 | 0.02 | 814 | 814 | 3 | 5' TTCCACA-GCTTTCTTGAACTT 3' ||||||| |||||||||||| 3' TCTAAGGTGTCCGAAAGAACTTGCCATTGCTG 5' |
1262 | Medicago truncatula | TGACAGAAGATAGAGGGCAC | alignment | plot | GSM643817_GDN-4 | gi|10703511|gb|BF003186.1|BF003186 EST431734 KV1 Medicago truncatula cDNA clone pKV1-2N11, mRNA sequence | 2 | 273 | 0.03 | 30 | 0.681818 | 2.5 | 5' TGACAGAAGATAGAGGGCAC 3' o||||||o|||o||||||| 3' GTGTTTTGTCTTTTATTTCCCGTGTGTATCCT 5' |
1263 | Medicago truncatula | TTGAGCCGTGCCAATATCACG | alignment | plot | GSM643817_GDN-4 | gi|20455996|gb|BQ255243.1|BQ255243 MTNAE61TKM KVKC Medicago truncatula cDNA clone pKVKC-5F1, mRNA sequence | 0 | 519 | 0 | 357 | 357 | 2.5 | 5' TTGAGCCGTGCCAATATCACG 3' ||||||||o||||||||| | 3' CACTAACTCGGCGCGGTTATAGGGAACGCGCA 5' |
1264 | Medicago truncatula | TGCCAAAGGAGATTTGCCCTG | alignment | plot | GSM643817_GDN-4 | gi|13779528|gb|BG644416.1|BG644416 EST506035 KV3 Medicago truncatula cDNA clone pKV3-37A6 5' end, mRNA sequence | 2 | 102 | 0 | 9 | 9 | 2.5 | 5' TGCCAAAGGAGATTTGCCCTG 3' ||||||||||||| ||||| o 3' TTTCACGGTTTCCTCTATACGGGTTAACGCTT 5' |
1265 | Medicago truncatula | TGATACACTAGCACGGATCAC | alignment | plot | GSM643817_GDN-4 | gi|27404253|gb|CA917323.1|CA917323 EST641470 GPOD Medicago truncatula cDNA clone GPOD-35F18, mRNA sequence | 0 | 721 | 0 | 14 | 0.7 | 3.5 | 5' TGATACACTAGCACGGATCAC 3' ||||||||o||| |o| o||| 3' TGGAACTATGTGGTCG-GTCGGGTGTACAGCA 5' |
1266 | Medicago truncatula | TAATCTGCATCCTGAGGTTTA | alignment | plot | GSM643817_GDN-4 | gi|209566404|gb|GE348194.1|GE348194 MEUBF76TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence | 0 | 447 | 0 | 147 | 49 | 2 | 5' TAATCTGCATCCTGAGGTTTA 3' |||||||||||||||||| | 3' TAATATTAGACGTAGGACTCCATTTCCAAGAA 5' |
1267 | Medicago truncatula | TCCAAAGGGATCGCATTGTTT | alignment | plot | GSM643817_GDN-4 | gi|11609208|gb|BF520525.1|BF520525 EST457996 DSIL Medicago truncatula cDNA clone pDSIL-24I14, mRNA sequence | 2 | 397 | 0 | 3 | 0.375 | 0 | 5' TCCAAAGGGATCGCATTGTTT 3' ||||||||||||||||||||| 3' CTGTAGGTTTCCCTAGCGTAACAAAGTATGAA 5' |
1268 | Medicago truncatula | TGATTGAGTCGTGCCAATATC | alignment | plot | GSM643817_GDN-4 | gi|20455996|gb|BQ255243.1|BQ255243 MTNAE61TKM KVKC Medicago truncatula cDNA clone pKVKC-5F1, mRNA sequence | 2 | 522 | 0 | 11 | 11 | 1 | 5' TGATTGAGTCGTGCCAATATC 3' ||||||||o||o||||||||| 3' AACCACTAACTCGGCGCGGTTATAGGGAACGC 5' |
1269 | Medicago truncatula | AGTTTTCCTCGGTAGTTAACT | alignment | plot | GSM643817_GDN-4 | gi|11930806|gb|BE320886.2|BE320886 NF028A05RT1F1033 Developing root Medicago truncatula cDNA clone NF028A05RT 5', mRNA sequence | 0 | 127 | 0 | 5 | 1.25 | 3.5 | 5' AGTTTTCCTCGGTAGTTAACT 3' ||o|o| |||o|o||o||||| 3' TAACTCGAGA-GAGTCGTCGATTGAACAGAAG 5' |
1270 | Medicago truncatula | TGATACACTAGCACGGATCAC | alignment | plot | GSM643817_GDN-4 | gi|148765991|gb|ES612685.1|ES612685 MTGland_A023_2007-05-04/MTGlandA023_D08_029_1 Medicago truncatula A17 glandular trichome Med | 0 | 347 | 0.03 | 14 | 0.7 | 3.5 | 5' TGATACACTAGCACGGATCAC 3' ||||||||o||| |o| o||| 3' TGGAACTATGTGGTCG-GTCGGGTGTATAGCA 5' |
1271 | Medicago truncatula | TCGATAAACCTCTGCATCCA | alignment | plot | GSM643817_GDN-4 | gi|260520284|gb|GT136120.1|GT136120 METBK06TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence | 1 | 393 | 0 | 2 | 1 | 2.5 | 5' TCGATAAACCTCTGCATCCA 3' ||o|||||||||| ||||| 3' GAGAAGTTATTTGGAGA-GTAGGAAACAAAGA 5' |
1272 | Medicago truncatula | GGAATCTTGATGATTCTGCAC | alignment | plot | GSM643817_GDN-4 | gi|57490008|gb|CX521424.1|CX521424 s13dNF75H10VI090_450634 Virus-Infected Leaves Medicago truncatula cDNA, mRNA sequence | 0 | 322 | 0.01 | 26 | 6.5 | 2.5 | 5' GGAATCTTGATGATTCTGCAC 3' ||||||o||||||| ||||| 3' CCACCCTTAGGACTACTACGACGTCGTCGTCA 5' |
1273 | Medicago truncatula | TTCCACAGCTTTCTTGAACTT | alignment | plot | GSM643817_GDN-4 | gi|20176305|gb|BQ124343.1|BQ124343 EST609919 GLSD Medicago truncatula cDNA clone pGLSD-35E7, mRNA sequence | 0 | 77 | 0 | 12 | 6 | 3 | 5' TTCCAC-AGCTTTCTTGAACTT 3' |||||| ||||||||||||| 3' ACAAAGGTGTTCGAAAGAACTTGCTAAAGCTG 5' |
1274 | Medicago truncatula | TTTGGGATCAGAAATTAGAGA | alignment | plot | GSM643817_GDN-4 | gi|57503511|gb|CX534792.1|CX534792 s13dNF77H03MJ032_331275 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago trunc | 1 | 379 | 0.05 | 2 | 0.333333 | 4 | 5' TTTGGGATCAGAAATTAGAGA 3' |||||o||||||| | |o || 3' GTCGAAACCTTAGTCTT-ACTTACTAGTTCAA 5' |
1275 | Medicago truncatula | TGGAGAAGCAGGGCACATGCT | alignment | plot | GSM643817_GDN-4 | gi|13370135|gb|BG451341.1|BG451341 NF107D04DT1F1032 Drought Medicago truncatula cDNA clone NF107D04DT 5', mRNA sequence | 2 | 495 | 0 | 5 | 0.238095 | 2 | 5' TGGAGAAGCAGGGCACATGCT 3' |o||||| ||o|||||||||| 3' CAAAATCTCTT-GTTCCGTGTACGACNGTTGT 5' |
1276 | Medicago truncatula | TCCTCGGTACCTATGTTGAT | alignment | plot | GSM643817_GDN-4 | gi|9196052|gb|BE322275.1|BE322275 NF022E02IN1F1008 Insect herbivory Medicago truncatula cDNA clone NF022E02IN 5', mRNA sequence | 0 | 599 | 0.02 | 12 | 1.71429 | 3.5 | 5' TCCTCGGTACCTATGTTGAT 3' ||| |o|||||o ||||o|| 3' TTAAAGGTGTCATGGGAACAATTAGAAACACC 5' |
1277 | Medicago truncatula | TTACCTATTCCACCAATTCCAT | alignment | plot | GSM643817_GDN-4 | gi|11935465|gb|AW696680.2|AW696680 NF109F07ST1F1062 Developing stem Medicago truncatula cDNA clone NF109F07ST 5', mRNA sequence | 2 | 123 | 0.01 | 2 | 2 | 3 | 5' TTACCTATTCCACCAATTCCAT 3' || ||||||||||| ||o|||o 3' ACAGAAGGGATAAGGTGGGTAGGGTGTTTAAG 5' |
1278 | Medicago truncatula | TTACCGATTCCACCCATTCCTA | alignment | plot | GSM643817_GDN-4 | gi|11935465|gb|AW696680.2|AW696680 NF109F07ST1F1062 Developing stem Medicago truncatula cDNA clone NF109F07ST 5', mRNA sequence | 2 | 123 | 0.03 | 2 | 2 | 3.5 | 5' TTACCGATTCCACCCATTCCTA 3' || || |||||||||||o|| | 3' ACAGAAGGGATAAGGTGGGTAGGG-TGTTTAA 5' |
1279 | Medicago truncatula | CCTCTTCCTCTTCCTCTTCCAC | alignment | plot | GSM643817_GDN-4 | gi|13606813|gb|BG588673.1|BG588673 EST490482 MHRP- Medicago truncatula cDNA clone pMHRP-57M15, mRNA sequence | 2 | 349 | 0.04 | 5 | 0.192308 | 2.5 | 5' CCTCTTCCTCTTCCTCTTCCAC 3' | || |||||o||||||||||| 3' ATGAGCAGTAGGAGGAGGAGAAGGTGGACGGT 5' |
1280 | Medicago truncatula | TTAATCTAGGAAATTACACTCG | alignment | plot | GSM643817_GDN-4 | gi|260519358|gb|GT137907.1|GT137907 METC385TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence | 2 | 371 | 0 | 41 | 20.5 | 1.5 | 5' TTAATCTAGGAAATTACACTCG 3' |||||| ||||||||||||o|| 3' TATTAATTAGTTCCTTTAATGTGGGCTACCTT 5' |
1281 | Medicago truncatula | TGGAGAAGCAGGGCACGTGCA | alignment | plot | GSM643817_GDN-4 | gi|13371358|gb|BG452564.1|BG452564 NF078F03LF1F1028 Developing leaf Medicago truncatula cDNA clone NF078F03LF 5', mRNA sequence | 1 | 355 | 0 | 3 | 1 | 4 | 5' TGGAGAAGCAGGGCACGTGCA 3' ||||||||||| | ||||| 3' GTTCACCTCTTCGTCAGTT-CACGTTTGTCAT 5' |
1282 | Medicago truncatula | TGTGTTCTCAGGTCGCCCCT | alignment | plot | GSM643817_GDN-4 | gi|22083858|gb|AJ502930.1|AJ502930 AJ502930 MTAMP Medicago truncatula cDNA clone mtgmadc120027d12, mRNA sequence | 0 | 46 | 0.05 | 88 | 2.75 | 4 | 5' TGTGTTCTCAGGTCGCCCCT 3' |||| ||||||| o||||o 3' AGTTACACTAGAGTCCTTTGGGGGTCTCTCTT 5' |
1283 | Medicago truncatula | CGTCTTCATCATCATCACATT | alignment | plot | GSM643817_GDN-4 | gi|13368671|gb|BG449889.1|BG449889 NF071H03IN1F1031 Insect herbivory Medicago truncatula cDNA clone NF071H03IN 5', mRNA sequence | 0 | 533 | 0.02 | 3 | 3 | 3 | 5' CGTCTTCATCATCATCA-CATT 3' | ||o|||||||||||| |||o 3' AGAAGGAGGAGTAGTAGTAGTCGTAGCAGAAG 5' |
1284 | Medicago truncatula | TGGAGAAGCAGGGCACGTGCA | alignment | plot | GSM643817_GDN-4 | gi|14982448|gb|BI308121.1|BI308121 EST529531 GPOD Medicago truncatula cDNA clone pGPOD-2M23 5' end, mRNA sequence | 0 | 751 | 0 | 12 | 12 | 3 | 5' TGGAGAAGCAGGGCACGTGCA 3' ||||||||||||o|||||o 3' CTCAACCTCTTCGTCCTGTGCATTCGACTTAG 5' |
1285 | Medicago truncatula | TACAATTCCTTAGGTGCTTTT | alignment | plot | GSM643817_GDN-4 | gi|14878965|gb|BI270917.1|BI270917 NF055F08FL1F1075 Developing flower Medicago truncatula cDNA clone NF055F08FL 5', mRNA sequenc | 1 | 513 | 0 | 2 | 1 | 3.5 | 5' TACAATTCCTTAGGTGCTTTT 3' || |||| || ||o||||||| 3' CAAAATCTTAATGA-TCTACGAAAACTAGGAA 5' |
1286 | Medicago truncatula | TTCCACAGCTTTCTTGAACTT | alignment | plot | GSM643817_GDN-4 | gi|20290484|gb|BQ153425.1|BQ153425 NF036F04IR1F1041 Irradiated Medicago truncatula cDNA clone NF036F04IR 5', mRNA sequence | 0 | 210 | 0.04 | 24 | 24 | 3.5 | 5' TTCCACAGCTTTCTTGAACTT 3' ||| |||||||o|o||||| o 3' GTCGAAGTTGTCGAAGGGACTTGCGTAAATGT 5' |
1287 | Medicago truncatula | TTTGGATTGAAGGGAGCTC | alignment | plot | GSM643817_GDN-4 | gi|11906925|gb|BF642767.1|BF642767 NF072B01IN1F1011 Insect herbivory Medicago truncatula cDNA clone NF072B01IN 5', mRNA sequence | 0 | 84 | 0 | 8 | 4 | 1.5 | 5' TTTGGATTGAAGGGAGCTC 3' ||||||||||||o||| || 3' CAACAAACCTAACTTCTCTC-AGAAATACACT 5' |
1288 | Medicago truncatula | TGGAGAAGCAGGGCACGTGCA | alignment | plot | GSM643817_GDN-4 | gi|9675757|gb|AL376005.1|AL376005 MtBB20F03R1 MtBB Medicago truncatula cDNA clone MtBB20F03 T7, mRNA sequence | 2 | 177 | 0.03 | 6 | 1 | 3.5 | 5' TGGAGAAGCAGGGCACGTGCA 3' |o||||| |||||||||| | 3' CGAATCTTCTTCTTCCCGTGCAC-TGTGGTAG 5' |
1289 | Medicago truncatula | AGCTTGGGCTAGGAATTTGTGC | alignment | plot | GSM643817_GDN-4 | gi|260519199|gb|GT137748.1|GT137748 METC218TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence | 0 | 28 | 0.01 | 18 | 3.6 | 3.5 | 5' AGCTTGGGCTAGGAATTTGTGC 3' |||||||||| |o||||o o|| 3' AGGATCGAACCCGACCTTTAAGGGCGGTGAAA 5' |
1290 | Medicago truncatula | TGAAGCTGCCAGCATGATCTA | alignment | plot | GSM643817_GDN-4 | gi|6708753|gb|AW299076.1|AW299076 EST305750 KV2 Medicago truncatula cDNA clone KV2-12A12, mRNA sequence | 0 | 228 | 0 | 5 | 2.5 | 3 | 5' TGAAGCTGCCAGCATGATCTA 3' ||||||||||| ||||||| 3' TTTATGTTCGACGGTCGGACTAGATTCTCCTA 5' |
1291 | Medicago truncatula | AGAGTTAATTAAGTTTTTAGT | alignment | plot | GSM643817_GDN-4 | gi|9668011|gb|AL368258.1|AL368258 MtBA23C03R1 MtBA Medicago truncatula cDNA clone MtBA23C03 T7, mRNA sequence | 2 | 171 | 0.03 | 2 | 1 | 2.5 | 5' AGAGTTAATTAAGTTTTTAGT 3' || ||||||||||oo|o|||| 3' TTTGTCACAATTAATTCGGAGATCACGGTTTA 5' |
1292 | Medicago truncatula | TTTTGGGACGGAGGGAGTATA | alignment | plot | GSM643817_GDN-4 | gi|157980539|gb|EX528811.1|EX528811 MTGland_A046_2007-06-01/MTGlandA046__D01_005_1 Medicago truncatula A17 glandular trichome Me | 2 | 521 | 0 | 2 | 0.5 | 2 | 5' TTTTGGGACGGAGGGAGTATA 3' |||||||||||||||||| | 3' ATGTTAAACCCTGCCTCCCTCAT-TCTCCCCA 5' |
1293 | Medicago truncatula | ATTTGGGACGGAGGGAGTATT | alignment | plot | GSM643817_GDN-4 | gi|157980539|gb|EX528811.1|EX528811 MTGland_A046_2007-06-01/MTGlandA046__D01_005_1 Medicago truncatula A17 glandular trichome Me | 2 | 521 | 0 | 2 | 0.5 | 2 | 5' ATTTGGGACGGAGGGAGTATT 3' ||||||||||||||||||| 3' ATGTTAAACCCTGCCTCCCTCATTCTCCCCAC 5' |
1294 | Medicago truncatula | TGCCAAAGGAGATTTGCCCTG | alignment | plot | GSM643817_GDN-4 | gi|260520380|gb|GT136216.1|GT136216 METBL11TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence | 0 | 521 | 0 | 8 | 8 | 2 | 5' TGCCAAAGGAGATTTGCCCTG 3' |||||||||||||||| || | 3' GAAAACGGTTTCCTCTAAACAGGTCATGTGTC 5' |
1295 | Medicago truncatula | CCTCGTTCCATACATCATCTAG | alignment | plot | GSM643817_GDN-4 | gi|57503415|gb|CX534696.1|CX534696 s13dNF49D10MJ090_331089 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago trunc | 0 | 222 | 0 | 5 | 5 | 2 | 5' CCTCGTTCCATACATCATCTAG 3' || |o|||||o||||||||||| 3' GTAAGG-GTAAGGTGTGTAGTAGATCTTGTTC 5' |
1296 | Medicago truncatula | TTCCACAGCTTTCTTGAACTG | alignment | plot | GSM643817_GDN-4 | gi|20308276|gb|BQ165653.1|BQ165653 EST611522 KVKC Medicago truncatula cDNA clone pKVKC-10G6, mRNA sequence | 0 | 646 | 0.01 | 15 | 1.36364 | 3.5 | 5' TTCCACAGCTTTCTTGAACTG 3' | ||||||||||||| | |o| 3' ATCGACGGTGTCGAAAGAAGT-GGCCTCGAAA 5' |
1297 | Medicago truncatula | TGCCTGGCTCCCTGTATGCCA | alignment | plot | GSM643817_GDN-4 | gi|148765690|gb|ES612384.1|ES612384 MTGland_A019_2007-05-07/MTGlandA019_F01_003_1 Medicago truncatula A17 glandular trichome Med | 0 | 344 | 0 | 49 | 49 | 0.5 | 5' TGCCTGGCTCCCTGTATGCCA 3' ||||||||||||||o|||||| 3' TCGTACGGACCGAGGGACGTACGGTCGTCCTC 5' |
1298 | Medicago truncatula | TTCCACAGCTTTCTTGAACTG | alignment | plot | GSM643817_GDN-4 | gi|161109516|gb|EY476340.1|EY476340 METAQ25TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence | 0 | 550 | 0.01 | 22 | 11 | 3 | 5' TTCCACA-GCTTTCTTGAACTG 3' ||||||| |||||||||| | | 3' TTCAAGGTGTCCGAAAGAACTCGCCAAAGATG 5' |
1299 | Medicago truncatula | TTCCACAGCTTTCTTGAACTT | alignment | plot | GSM643817_GDN-4 | gi|10704748|gb|BF004473.1|BF004473 EST432971 KV1 Medicago truncatula cDNA clone pKV1-17B18, mRNA sequence | 0 | 358 | 0.01 | 1243 | 1243 | 3 | 5' TTCCACA-GCTTTCTTGAACTT 3' ||||||| |||||||||||| 3' TTGAAGGTGTCCGAAAGAACTTGCCAAAAAAG 5' |
1300 | Medicago truncatula | TTTTGGGACGGAGGGAGTATA | alignment | plot | GSM643817_GDN-4 | gi|148765165|gb|ES611859.1|ES611859 MTGland_A012__2007-05-05/MTGlandA012__H01_001_1 Medicago truncatula A17 glandular trichome M | 0 | 316 | 0 | 2 | 0.666667 | 2 | 5' TTTTGGGACGGAGGGAGTATA 3' |||||||||||||||||| | 3' ATGTTAAACCCTGCCTCCCTCAT-TATGTATT 5' |
1301 | Medicago truncatula | ATTTGGGACGGAGGGAGTATT | alignment | plot | GSM643817_GDN-4 | gi|148765165|gb|ES611859.1|ES611859 MTGland_A012__2007-05-05/MTGlandA012__H01_001_1 Medicago truncatula A17 glandular trichome M | 0 | 316 | 0 | 2 | 0.666667 | 1 | 5' ATTTGGGACGGAGGGAGTATT 3' ||||||||||||||||||| | 3' ATGTTAAACCCTGCCTCCCTCATTATGTATTC 5' |
1302 | Medicago truncatula | TCAAAGGGAGGTGTGGAGTAG | alignment | plot | GSM643817_GDN-4 | gi|13595775|gb|BG580711.1|BG580711 EST482438 GVN Medicago truncatula cDNA clone pGVN-61G24 5' end, mRNA sequence | 2 | 223 | 0.04 | 4 | 0.210526 | 3.5 | 5' TCAAAGGGAGGTGTGGAGTAG 3' |||||||||||| o||||| 3' ACACTGTTTCCCTCCACTTCTCATAGAACTCT 5' |
1303 | Medicago truncatula | CCTCGTTCCATACATCATCTAG | alignment | plot | GSM643817_GDN-4 | gi|57503277|gb|CX534558.1|CX534558 s13dNF47H03MJ032_330823 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago trunc | 0 | 491 | 0 | 30 | 30 | 3 | 5' CCTCGTTCCATACATCATCTAG 3' | ||o|||||||| |||||||o 3' GCTAGTAGTAAGGTATGCAGTAGATTGTGCTG 5' |
1304 | Medicago truncatula | TTACCTATTCCACCAATTCCAT | alignment | plot | GSM643817_GDN-4 | gi|57501174|gb|CX532455.1|CX532455 s13dNF66A11MJ081_271200 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago trunc | 1 | 101 | 0 | 4 | 2 | 3 | 5' TTACCTATTCCACCAATTCCAT 3' || |||||||| || ||||||| 3' ACTAAACGGATAAGGCGGCTAAGGTATTTACG 5' |
1305 | Medicago truncatula | TCAATGTGTTGTGTTTGTCTC | alignment | plot | GSM643817_GDN-4 | gi|11958274|gb|AW695035.2|AW695035 NF082G11ST1F1087 Developing stem Medicago truncatula cDNA clone NF082G11ST 5', mRNA sequence | 0 | 44 | 0.02 | 3 | 3 | 3 | 5' TCAATGTGTTGTGTTTGTCTC 3' || |||| ||||||||||| | 3' GCAAAGATACA-AACACAAACAGTGACACTCA 5' |
1306 | Medicago truncatula | TCCTCGGTACCTATGTTGAT | alignment | plot | GSM643817_GDN-4 | gi|7563856|gb|AW689120.1|AW689120 NF015F02ST1F1000 Developing stem Medicago truncatula cDNA clone NF015F02ST 5', mRNA sequence | 0 | 237 | 0.02 | 12 | 1.71429 | 3.5 | 5' TCCTCGGTACCTATGTTGAT 3' ||| |o|||||o ||||o|| 3' TTAAAGGTGTCATGGGAACAATTAGAAACACC 5' |
1307 | Medicago truncatula | TTGAAGGGGCAGGGAGAGGAG | alignment | plot | GSM643817_GDN-4 | gi|260519406|gb|GT137955.1|GT137955 METC440TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence | 0 | 543 | 0.02 | 4 | 0.458333 | 3.5 | 5' TTGAAGGGGCAGGGAGAGGAG 3' ||||| |o|||||o|o||| | 3' ATTCAACTTGCTCGTCCTTTTCCACGTCCCTT 5' |
1308 | Medicago truncatula | TTAATCTAGGAAATTACACTCG | alignment | plot | GSM643817_GDN-4 | gi|260520915|gb|GT136751.1|GT136751 METBR04TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence | 0 | 362 | 0 | 293 | 146.5 | 1.5 | 5' TTAATCTAGGAAATTACACTCG 3' |||||| ||||||||||||o|| 3' TATGAATTAGTTCCTTTAATGTGGGCTACTTT 5' |
1309 | Medicago truncatula | TCGGACCAGGCTTCATTCC | alignment | plot | GSM643817_GDN-4 | gi|11935327|gb|BE325087.2|BE325087 NF120A06ST1F1040 Developing stem Medicago truncatula cDNA clone NF120A06ST 5', mRNA sequence | 2 | 455 | 0 | 6 | 6 | 1.5 | 5' TCGGACCAGGCTT-CATTCC 3' o|||||||||||| |||||| 3' CTTAGGCCTGGTCCGAAAGTAAGGTCCGTAAA 5' |
1310 | Medicago truncatula | TTAATCTAGGAAATTACACTCG | alignment | plot | GSM643817_GDN-4 | gi|209563806|gb|GE345116.1|GE345116 MEUAK59TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence | 2 | 374 | 0 | 41 | 20.5 | 1.5 | 5' TTAATCTAGGAAATTACACTCG 3' |||||| ||||||||||||o|| 3' TATTAATTAGTTCCTTTAATGTGGGCTACCTT 5' |
1311 | Medicago truncatula | TAAGACATCAGCTATAAGCTA | alignment | plot | GSM643817_GDN-4 | gi|7718765|gb|AW774848.1|AW774848 EST333999 KV3 Medicago truncatula cDNA clone pKV3-24I21, mRNA sequence | 1 | 249 | 0.01 | 2 | 2 | 3.5 | 5' TAAGACATCA-GCTATAAGCTA 3' o|| |||||| ||| ||||||| 3' TACCGTTATGTAGTACGAAATTCGATACTTTA 5' |
1312 | Medicago truncatula | TTCCACAGCTTTCTTGAACTT | alignment | plot | GSM643817_GDN-4 | gi|151389884|gb|EV259762.1|EV259762 MTYDZ84TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence | 0 | 535 | 0.04 | 22 | 11 | 3 | 5' TTCCACA-GCTTTCTTGAACTT 3' ||||||| |||||||||||| 3' TTCAAGGTGTCCGAAAGAACTTGCCAAAGATG 5' |
1313 | Medicago truncatula | TTACCGATTCCACCCATTCCTA | alignment | plot | GSM643817_GDN-4 | gi|83665171|gb|DW015579.1|DW015579 EST1224540 MTY Medicago truncatula cDNA clone MTYA712, mRNA sequence | 0 | 411 | 0 | 96 | 48 | 4 | 5' TTACCGATTCCACCCATTCCTA 3' o| ||o||||||||||o| |o| 3' AATTGA-GGTTAAGGTGGGTGAAGGTTGTGAC 5' |
1314 | Medicago truncatula | CGTCTTCATCATCATCACATT | alignment | plot | GSM643817_GDN-4 | gi|20284133|gb|BQ147074.1|BQ147074 NF032B03FL1F1029 Developing flower Medicago truncatula cDNA clone NF032B03FL 5', mRNA sequenc | 0 | 309 | 0.03 | 11 | 0.716216 | 3 | 5' CGTCTTCATCATCATCA-CATT 3' |o|| |||||||||||| |||o 3' AGAAGTAGTAGTAGTAGTAGTAGTAGTAGTAG 5' |
1315 | Medicago truncatula | TTGGATTGAAGGGAGCTCT | alignment | plot | GSM643817_GDN-4 | gi|260520362|gb|GT136198.1|GT136198 METBK88TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence | 0 | 694 | 0.01 | 10 | 2.5 | 3 | 5' TTGGATTGAAGGGAGCTCT 3' |||||o||||||| |o|| 3' ACTTAACCTGACTTCCCAGGGGATAATATTGG 5' |
1316 | Medicago truncatula | TTGGACTGAAGGGAGCTCCC | alignment | plot | GSM643817_GDN-4 | gi|260520362|gb|GT136198.1|GT136198 METBK88TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence | 0 | 694 | 0.04 | 10 | 2.5 | 4 | 5' TTGGACTGAAGGGAGCTCCC 3' ||||||||||||| | || 3' ACTTAACCTGACTTCCCAGG-GGATAATATTG 5' |
1317 | Medicago truncatula | TTACCTATTCCACCAATTCCAT | alignment | plot | GSM643817_GDN-4 | gi|209561029|gb|GE343715.1|GE343715 MEUA443TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence | 0 | 357 | 0 | 135 | 1.73193 | 3 | 5' TTACCTATTCCACCAATTCCAT 3' oo||||| |||||||||o|||o 3' TAGTGGTGGATCAGGTGGTTAGGGTGGACTAG 5' |
1318 | Medicago truncatula | TGCCTGGCTCCCTGTATGCCA | alignment | plot | GSM643817_GDN-4 | gi|10706464|gb|BF006117.1|BF006117 EST434687 DSLC Medicago truncatula cDNA clone pDSLC-39L12, mRNA sequence | 0 | 227 | 0 | 6 | 6 | 2 | 5' TGCCTGGCTCCCTGTATGCCA 3' |||||||||||||| ||||| 3' TCGTACGGACCGAGGGACTTACGGACGCCGTC 5' |
1319 | Medicago truncatula | ATTTGGGACGGAGGGAGTATT | alignment | plot | GSM643817_GDN-4 | gi|57487645|gb|CX519119.1|CX519119 s13dNF49D08VI074_439458 Virus-Infected Leaves Medicago truncatula cDNA, mRNA sequence | 2 | 93 | 0.05 | 2 | 1 | 3.5 | 5' ATTTGGGACGGAGGGAGTATT 3' ||||| | ||||o|||oo||| 3' GTCTTAAACACAGCCTTCCTTGTAATAATGGA 5' |
1320 | Medicago truncatula | AGAATCCTGATGATGCTGCAG | alignment | plot | GSM643817_GDN-4 | gi|10704197|gb|BF003922.1|BF003922 EST432420 KV1 Medicago truncatula cDNA clone pKV1-14G3, mRNA sequence | 0 | 480 | 0 | 12 | 12 | 1 | 5' AGAATCCTGATGATGCTGCAG 3' ||||||||||||||||||| | 3' TACCTCTTAGGACTACTACGACGACGACGACG 5' |
1321 | Medicago truncatula | TTAATCTAGGAAATTACACTCG | alignment | plot | GSM643817_GDN-4 | gi|8529017|gb|BE124460.1|BE124460 EST393495 GVN Medicago truncatula cDNA clone pGVN-59P9, mRNA sequence | 0 | 109 | 0 | 27 | 27 | 3.5 | 5' TTAATCTAGGAAATTACACTCG 3' |||||| |||||||o||| | | 3' ACTAAATTAGTTCCTTTAGTGTCAACCATTAT 5' |
1322 | Medicago truncatula | TTACCGATTCCACCCATTCCTA | alignment | plot | GSM643817_GDN-4 | gi|11936378|gb|AW693660.2|AW693660 NF066G08ST1F1000 Developing stem Medicago truncatula cDNA clone NF066G08ST 5', mRNA sequence | 0 | 210 | 0 | 235 | 235 | 2 | 5' TTACCGATTCCACCCATTCCTA 3' ||||||| |||||||||o||o| 3' ACAAAATGGCTTAGGTGGGTAGGGGTTCCTAC 5' |
1323 | Medicago truncatula | TTACCTATTCCACCAATTCCAT | alignment | plot | GSM643817_GDN-4 | gi|14866334|gb|BI264259.1|BI264259 NF110C09PL1F1070 Phosphate starved leaf Medicago truncatula cDNA clone NF110C09PL 5', mRNA se | 0 | 602 | 0 | 3 | 3 | 2.5 | 5' TTACCTATTCCACCAATTCCAT 3' || ||||||||||||||o|| | 3' ACAAAAGGGATAAGGTGGTTAGGGCATCTAGG 5' |
1324 | Medicago truncatula | CCTCTTCCTCTTCCTCTTCCAC | alignment | plot | GSM643817_GDN-4 | gi|9195933|gb|BE322156.1|BE322156 NF010F11IN1F1092 Insect herbivory Medicago truncatula cDNA clone NF010F11IN 5', mRNA sequence | 2 | 219 | 0.01 | 2 | 2 | 1.5 | 5' CCTCTTCCTCTTCCTCTTCCAC 3' | ||||||||||||||o||||| 3' AGTAGAAGAAGGAGAAGGAGGAGGTGGAGTGA 5' |
1325 | Medicago truncatula | TTAATCTAGGAAAATACGGTG | alignment | plot | GSM643817_GDN-4 | gi|20274358|gb|BQ138232.1|BQ138232 NF001B02PH1F1015 Phoma-infected Medicago truncatula cDNA clone NF001B02PH 5', mRNA sequence | 0 | 170 | 0.01 | 10 | 10 | 3.5 | 5' TTAATCTAGGAAAATACGGTG 3' |||||| |||||| o||||| 3' GATTAATTAGTTCCTTTAGTGCCAACTTGTGT 5' |
1326 | Medicago truncatula | TCCAAAGGGATCGCATTGTTT | alignment | plot | GSM643817_GDN-4 | gi|157983377|gb|EX531649.1|EX531649 MTGland_B026_2007-07-02/MTGlandB026_E12_044_1 Medicago truncatula A17 glandular trichome Med | 2 | 38 | 0 | 3 | 0.375 | 0 | 5' TCCAAAGGGATCGCATTGTTT 3' ||||||||||||||||||||| 3' CTGTAGGTTTCCCTAGCGTAACAAAGTATGAA 5' |
1327 | Medicago truncatula | TTTGGGATCAGAAATTAGAGA | alignment | plot | GSM643817_GDN-4 | gi|9669808|gb|AL370055.1|AL370055 MtBA35C02R1 MtBA Medicago truncatula cDNA clone MtBA35C02 T7, mRNA sequence | 1 | 27 | 0.03 | 4 | 2 | 4 | 5' TTTGGGATCAGAAATTAGAGA 3' |||||||||| ||| o|o| | 3' ATTAAAACCCTAGTATTTCGTTT-TGAATAAA 5' |
1328 | Medicago truncatula | GAGCCAAGGATGACTTGCCGG | alignment | plot | GSM643817_GDN-4 | gi|13784051|gb|BG648939.1|BG648939 EST510558 HOGA Medicago truncatula cDNA clone pHOGA-24G6 5' end, mRNA sequence | 0 | 518 | 0 | 66 | 66 | 2 | 5' GAGCCAAGGATGACTTGCCGG 3' o|||||||o|||| ||||||| 3' TGTTTTCGGTTCTTACTAAACGGCCGTATATA 5' |
1329 | Medicago truncatula | ATGTGACCTTGTATATGATC | alignment | plot | GSM643817_GDN-4 | gi|6465779|gb|AW191278.1|AW191278 T113573e KV2 Medicago truncatula cDNA clone pKV2-2J13, mRNA sequence | 2 | 229 | 0.02 | 2 | 2 | 2.5 | 5' ATGTGACCTTGTATATGATC 3' |o|||| ||| ||||||||| 3' TGACTGCACTTGAA-ATATACTAGGTCGATGA 5' |
1330 | Medicago truncatula | TGATACACTAGCACGGATCAC | alignment | plot | GSM643817_GDN-4 | gi|20273861|gb|BQ137735.1|BQ137735 NF004G08NR1F1000 Nodulated root Medicago truncatula cDNA clone NF004G08NR 5', mRNA sequence | 0 | 673 | 0.02 | 811 | 811 | 4 | 5' TGATACACTAGCACGGATCAC 3' |||| |||||| ||||||| 3' TAAAACTACGTGATCTGCCCTAGTGTTCATTG 5' |
1331 | Medicago truncatula | TCTTCTTCTTCTTCTTGCACC | alignment | plot | GSM643817_GDN-4 | gi|260520513|gb|GT136349.1|GT136349 METBM56TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence | 2 | 56 | 0.05 | 15 | 0.0215569 | 2 | 5' TCTTCTTCTTCTTCTTGCACC 3' |||||||||||||||| || | 3' AAGAAGAAGAAGAAGAAGAA-GTCGTTTCTTG 5' |
1332 | Medicago truncatula | TCCTCGGTACCTATGTTGAT | alignment | plot | GSM643817_GDN-4 | gi|209563361|gb|GE343546.1|GE343546 MEUA250TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence | 0 | 613 | 0.04 | 8 | 0.228571 | 4 | 5' TCCTCGGTACCTATGTTGAT 3' ||| |o|||||o ||o|o|| 3' CTAAAGGTGTCATGGGAACGATTAGAACCAAC 5' |
1333 | Medicago truncatula | CCTGTAATCCCAGCACTTTGG | alignment | plot | GSM643817_GDN-4 | gi|6708718|gb|AW299041.1|AW299041 EST305715 KV2 Medicago truncatula cDNA clone KV2-11I14, mRNA sequence | 1 | 595 | 0.01 | 4 | 0.666667 | 4 | 5' CCTGTAATCCCAGCACTTTGG 3' ||| |||| ||||||||| | 3' ACCAGGAAATTA-GGTCGTGAACACCGGAACA 5' |
1334 | Medicago truncatula | AAAGGTGCCAATTATGAGTGT | alignment | plot | GSM643817_GDN-4 | gi|9681173|gb|AL381422.1|AL381422 MtBC019H11R1 MtBC Medicago truncatula cDNA clone MtBC019H1 T7, mRNA sequence | 0 | 332 | 0.02 | 8 | 4 | 4 | 5' AAAGGTGCCAATTATGAGTGT 3' ||||||o||| ||| o |||| 3' CTTGTTTCCATGGT-AATTTACACATTTAAGT 5' |
1335 | Medicago truncatula | TAATCTGCATCCTGAGGTTTA | alignment | plot | GSM643817_GDN-4 | gi|13779607|gb|BG644495.1|BG644495 EST506114 KV3 Medicago truncatula cDNA clone pKV3-37O12 5' end, mRNA sequence | 0 | 502 | 0 | 10 | 10 | 2.5 | 5' TAATCTGCATCCTGAGGTTTA 3' |||||||||||||| ||||o 3' TTGTATTAGACGTAGGACGCCAAGAACTGGAC 5' |
1336 | Medicago truncatula | TGATACACTAGCACGGATCAC | alignment | plot | GSM643817_GDN-4 | gi|57564439|gb|CX538597.1|CX538597 s13dNF81C12GS086_460446 Germinating Seed Medicago truncatula cDNA, mRNA sequence | 0 | 99 | 0.02 | 14 | 0.7 | 3.5 | 5' TGATACACTAGCACGGATCAC 3' ||||||||o||| |o| o||| 3' TGGAACTATGTGGTCG-GTCGGGTGTACAGCA 5' |
1337 | Medicago truncatula | TGGAGAAGCAGGGCACATGCT | alignment | plot | GSM643817_GDN-4 | gi|7674738|gb|AW126098.2|AW126098 N100295e rootphos(-) Medicago truncatula cDNA clone MHRP-4C5, mRNA sequence | 2 | 29 | 0 | 5 | 0.238095 | 2 | 5' TGGAGAAGCAGGGCACATGCT 3' |o||||| ||o|||||||||| 3' CAAAATCTCTT-GTTCCGTGTACGACTGTTGT 5' |
1338 | Medicago truncatula | AGATTGAGACTTGTATGGCTT | alignment | plot | GSM643817_GDN-4 | gi|13595643|gb|BG580579.1|BG580579 EST482306 GVN Medicago truncatula cDNA clone pGVN-57P18 5' end, mRNA sequence | 0 | 522 | 0.02 | 2 | 2 | 4 | 5' AGATTGAGACTTGTATGGCTT 3' ||| ||| |||| ||| |||| 3' AAAGTCTTACT-TGAAAATAACGAAATTGTAA 5' |
1339 | Medicago truncatula | TTCCACAGCTTTCTTGAACTG | alignment | plot | GSM643817_GDN-4 | gi|27523320|gb|CA990426.1|CA990426 EST643934 GESD Medicago truncatula cDNA clone GESD-28L1, mRNA sequence | 0 | 537 | 0.05 | 15 | 1.36364 | 3.5 | 5' TTCCACAGCTTTCTTGAACTG 3' | ||||||||||||| | |o| 3' ATCGACGGTGTCGAAAGAAGT-GGCCTCGAAA 5' |
1340 | Medicago truncatula | TTTTGGGACGGAGGGAGTATA | alignment | plot | GSM643817_GDN-4 | gi|157985004|gb|EX533276.1|EX533276 MTGland_B047_2007-06-23/MtGland_B047_E08_028_1 Medicago truncatula A17 glandular trichome Me | 2 | 387 | 0 | 2 | 0.5 | 2 | 5' TTTTGGGACGGAGGGAGTATA 3' ||||||||||||||||||| 3' ATGTTAAACCCTGCCTCCCTCATAAAAGAATT 5' |
1341 | Medicago truncatula | TTGCTTGGTGCTGGTCGGGAA | alignment | plot | GSM643817_GDN-4 | gi|11960861|gb|BE315730.2|BE315730 NF025F05LF1F1043 Developing leaf Medicago truncatula cDNA clone NF025F05LF 5', mRNA sequence | 0 | 312 | 0 | 41 | 13.6667 | 4 | 5' TTGCTTGGTGCTGGTCGGGAA 3' ||||||||||| | ||||| 3' CCCCAACGAACCACGTCGAGCCCCATACTCCC 5' |
1342 | Medicago truncatula | TTCCACAGCTTTCTTGAACTT | alignment | plot | GSM643817_GDN-4 | gi|13372800|gb|BG454006.1|BG454006 NF104A04LF1F1022 Developing leaf Medicago truncatula cDNA clone NF104A04LF 5', mRNA sequence | 0 | 352 | 0.01 | 6 | 6 | 3 | 5' TTCCACA-GCTTTCTTGAACTT 3' ||||||| |||||||||||| 3' TTGAAGGTGTCCGAAAGAACTTGCCAAAAAGG 5' |
1343 | Medicago truncatula | CCTCTTCCTCTTCCTCTTCCAC | alignment | plot | GSM643817_GDN-4 | gi|57497759|gb|CX529040.1|CX529040 s13dNF40B06MJ046_244140 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago trunc | 0 | 38 | 0.05 | 3 | 0.214286 | 4 | 5' CCTCTTCCTCTTCCTCTTCCAC 3' | ||||| |||||||||| | | 3' AGAAGAAGAAGAAGAAGGAGAACGAGAAAGCT 5' |
1344 | Medicago truncatula | TTCCACAGCTTTCTTGAACTT | alignment | plot | GSM643817_GDN-4 | gi|55446482|gb|AJ847301.1|AJ847301 AJ847301 MtSTW Medicago truncatula cDNA clone MtTW07P18N1, mRNA sequence | 0 | 37 | 0 | 214 | 214 | 3 | 5' TTCCACA-GCTTTCTTGAACTT 3' ||||||| |||||||||||| 3' CGGAAGGTGTCCGAAAGAACTTGCTACCGATG 5' |
1345 | Medicago truncatula | GGAATCTTGATGATTCTGCAC | alignment | plot | GSM643817_GDN-4 | gi|9056759|gb|BE240575.1|BE240575 EST404624 MHRP- Medicago truncatula cDNA clone pMHRP-45L2, mRNA sequence | 0 | 245 | 0 | 26 | 6.5 | 2.5 | 5' GGAATCTTGATGATTCTGCAC 3' ||||||o||||||| ||||| 3' CCACCCTTAGGACTACTACGACGTCGTCGTCA 5' |
1346 | Medicago truncatula | TGGAGAAGCAGGGCACGTGCA | alignment | plot | GSM643817_GDN-4 | gi|89245334|gb|DY617121.1|DY617121 AC2814 NOLLY Medicago truncatula cDNA 5', mRNA sequence | 1 | 165 | 0 | 3 | 3 | 3 | 5' TGGAGAAGCAGGGCACGTGCA 3' |||||||||| oo||| |||| 3' CTTAACCTCTTCGTGTTGTGAACGTCGTTCTC 5' |
1347 | Medicago truncatula | TTGACAGAAGATAGAGGGCAC | alignment | plot | GSM643817_GDN-4 | gi|83668422|gb|DW018830.1|DW018830 EST1227791 MTY Medicago truncatula cDNA clone MTYBB44, mRNA sequence | 0 | 610 | 0 | 4 | 4 | 1.5 | 5' TTGACAGAAGATAGAGGGCAC 3' ||||||||||||||||o||| 3' TTCTAACTGTCTTCTATCTCTCGTAACCAGAT 5' |
1348 | Medicago truncatula | TGAGCCAGGATGGCTTGCCGG | alignment | plot | GSM643817_GDN-4 | gi|7206473|gb|AW561047.1|AW561047 EST316095 DSIR Medicago truncatula cDNA clone pDSIR-31M23, mRNA sequence | 0 | 605 | 0 | 48 | 48 | 3.5 | 5' TGAGCC-AGGATGGCTTGCCGG 3' |||||| ||||||| ||||| o 3' ATTACTCGGTTCCTACCTAACGGATTCTGGTT 5' |
1349 | Medicago truncatula | TTACCGATTCCACCCATTCCTA | alignment | plot | GSM643817_GDN-4 | gi|14879467|gb|BI271199.1|BI271199 NF050F01FL1F1015 Developing flower Medicago truncatula cDNA clone NF050F01FL 5', mRNA sequenc | 0 | 99 | 0 | 1087 | 1087 | 2 | 5' TTACCGATTCCACCCATTCCTA 3' ||||||| ||||||||| |||| 3' ACAAAATGGCTTAGGTGGGTACGGATTCCTAC 5' |
1350 | Medicago truncatula | TGAGCCAGGATGGCTTGCCGG | alignment | plot | GSM643817_GDN-4 | gi|7206473|gb|AW561047.1|AW561047 EST316095 DSIR Medicago truncatula cDNA clone pDSIR-31M23, mRNA sequence | 2 | 633 | 0 | 35 | 35 | 3 | 5' TGAGCCAGGATG-GCTTGCCGG 3' |||||||||||| | |||||oo 3' CATTACTCGGTCCTACTCAAACGGTTTCATTA 5' |
1351 | Physcomitrella patens | TGCACTGCCTCTTCCCTGGCT | alignment | plot | GSM410805-5251 | PP1S40_48V6.6 cdna:known scaffold:ASM242v1:DS544929.1:397418:401180:-1 gene:PP1S40_48V6 transcript:PP1S40_48V6.6 | 0 | 1991 | 0 | 507 | 84.5 | 3 | 5' TGCACTGCCTCTTCCCTGGCT 3' |||| ||||||||||| | || 3' GTGTACGTAACGGAGAAGGGTC-GAGTGTGGC 5' |
1352 | Physcomitrella patens | TGATGGTGATGCGCTTGTATC | alignment | plot | GSM410805-5251 | PP1S4_128V6.1 cdna:known scaffold:ASM242v1:DS544893.1:955479:955841:-1 gene:PP1S4_128V6 transcript:PP1S4_128V6.1 | 0 | 54 | 0 | 3 | 3 | 2 | 5' TGATGGTGATGCGCTTGTA-TC 3' |||||||||||| |||||| || 3' AGGAACTACCACTACGAGAACATCAGCGTCTC 5' |
1353 | Physcomitrella patens | TCTTAGATCTACAATGCCTCT | alignment | plot | GSM410805-5251 | PP1S70_252V6.1 cdna:known scaffold:ASM242v1:DS544959.1:1546625:1548213:-1 gene:PP1S70_252V6 transcript:PP1S70_252V6.1 | 2 | 928 | 0.01 | 2 | 2 | 2.5 | 5' TCTTAGATCTACAATGCCTCT 3' | |o||||||||||| ||||| 3' TGTGATAGTCTAGATGTTAGGGAGAGACCGTG 5' |
1354 | Physcomitrella patens | TATGTTGCAGATTCTTCATTT | alignment | plot | GSM410805-5251 | PP1S97_176V6.1 cdna:known scaffold:ASM242v1:DS544986.1:937439:940190:1 gene:PP1S97_176V6 transcript:PP1S97_176V6.1 | 0 | 1396 | 0 | 159 | 159 | 4 | 5' TATGTTGCAGATTCTTCATTT 3' ||| ||||||||||||| | 3' TATGCTACTACGTCTAAGAAGTTCACGCGCTA 5' |
1355 | Physcomitrella patens | TTCTTGCACTCCTCCATCTCT | alignment | plot | GSM410805-5251 | PP1S188_39V6.1 cdna:known scaffold:ASM242v1:DS545077.1:420675:421969:-1 gene:PP1S188_39V6 transcript:PP1S188_39V6.1 | 0 | 588 | 0 | 109641 | 109641 | 1.5 | 5' TTCTTGCACTCCTCCATCTCT 3' |||||||||||||| |||||o 3' CCAGAAGAACGTGAGGAGTTAGAGGGAGTCCT 5' |
1356 | Physcomitrella patens | TAGGTGCGTTTCCACCAAAG | alignment | plot | GSM410805-5251 | PP1S7_389V6.2 cdna:known scaffold:ASM242v1:DS544896.1:2336121:2340324:-1 gene:PP1S7_389V6 transcript:PP1S7_389V6.2 | 2 | 1335 | 0 | 5 | 2.5 | 1 | 5' TAGGTGCGTTTCCACCAAAG 3' |||||||||||| ||||||| 3' GTTCATCCACGCAAAG-TGGTTTCCCAGATAG 5' |
1357 | Physcomitrella patens | ACACTCTCTCCATTTCTCTGC | alignment | plot | GSM410805-5251 | PP1S159_13V6.1 cdna:known scaffold:ASM242v1:DS545048.1:86215:89324:1 gene:PP1S159_13V6 transcript:PP1S159_13V6.1 | 0 | 2472 | 0.01 | 404 | 404 | 3.5 | 5' ACACTCTCTCCATTTCTCTGC 3' ||||||||||||||||| o 3' GTTAAGTGAGAGAGGTAAAGAGTTTGACTTAC 5' |
1358 | Physcomitrella patens | TCATCATCATCATCATCCTCA | alignment | plot | GSM410805-5251 | PP1S7_389V6.2 cdna:known scaffold:ASM242v1:DS544896.1:2336121:2340324:-1 gene:PP1S7_389V6 transcript:PP1S7_389V6.2 | 2 | 790 | 0.04 | 2 | 1 | 0 | 5' TCATCATCATCATCATCCTCA 3' ||||||||||||||||||||| 3' TAGTAGTAGTAGTAGTAGTAGGAGTAGGTACA 5' |
1359 | Physcomitrella patens | TCAATGCTCTCTGGAGCTTCT | alignment | plot | GSM410805-5251 | PP1S18_318V6.1 cdna:known scaffold:ASM242v1:DS544907.1:2489598:2492020:-1 gene:PP1S18_318V6 transcript:PP1S18_318V6.1 | 0 | 1802 | 0.01 | 4 | 4 | 3.5 | 5' TCAATGCTCTCTGGAGCTTCT 3' |||||||||||||o|| | | 3' AGAGAGTTACGAGAGACTTC-ATTAGGTTGGT 5' |
1360 | Physcomitrella patens | TGACAGAAGAGAGTGAGCAC | alignment | plot | GSM410805-5251 | PP1S1_134V6.1 cdna:novel scaffold:ASM242v1:DS544890.1:813596:814136:-1 gene:PP1S1_134V6 transcript:PP1S1_134V6.1 | 0 | 40 | 0 | 104 | 104 | 1 | 5' TGACAGAAGAGAGTGAGCAC 3' ||||||||||||||||||| 3' GTGAACTGTCTTCTCTCACTCGTAGATGTTAA 5' |
1361 | Physcomitrella patens | CGTCTTCCTCTTCCTCTTCCT | alignment | plot | GSM410805-5251 | PP1S44_263V6.3 cdna:known scaffold:ASM242v1:DS544933.1:1674521:1678736:-1 gene:PP1S44_263V6 transcript:PP1S44_263V6.3 | 1 | 32 | 0.05 | 2 | 2 | 4 | 5' CGTCTTCCTCTTCCTCTTCCT 3' |||| |||||o|| | o|||| 3' GGTAGCAGTAGGAGGAGCACGAGGAGGAGGAG 5' |
1362 | Physcomitrella patens | TAAACCCTCTCTCTATTCCTG | alignment | plot | GSM410805-5251 | PP1S14_433V6.1 cdna:known scaffold:ASM242v1:DS544903.1:2747456:2749000:-1 gene:PP1S14_433V6 transcript:PP1S14_433V6.1 | 0 | 536 | 0.04 | 83 | 83 | 4 | 5' TAAACCCTCTCTCTATTCCTG 3' ||||| |||| ||| ||| || 3' TACTATTTGTGAGATAGAGAAGAACCTGTGAG 5' |
1363 | Physcomitrella patens | CTTGGACTGAAGGGAGCTCC | alignment | plot | GSM410805-5251 | PP1S332_22V6.1 cdna:known scaffold:ASM242v1:DS545220.1:67340:71481:1 gene:PP1S332_22V6 transcript:PP1S332_22V6.1 | 1 | 937 | 0.02 | 2 | 2 | 4 | 5' CTTGGACTGAAGGGAGCTCC 3' ||| || |||||||| ||| 3' GGGAGAAACTTACTTCCCT-GAGAAAGTCGGT 5' |
1364 | Physcomitrella patens | TTCTTGCACTCCTCCATCTCT | alignment | plot | GSM410805-5251 | PP1S545_4V6.1 cdna:known scaffold:ASM242v1:DS545413.1:16259:19444:1 gene:PP1S545_4V6 transcript:PP1S545_4V6.1 | 0 | 449 | 0 | 9590 | 9590 | 1.5 | 5' TTCTTGCACTCCTCCATCTCT 3' |||||||||||||| |||||o 3' CCAAAAGAACGTGAGGAGCTAGAGGGAGTTGT 5' |
1365 | Physcomitrella patens | TGCACTGCCTCTTCCCTGGCT | alignment | plot | GSM410805-5251 | PP1S77_277V6.1 cdna:known scaffold:ASM242v1:DS544966.1:1461739:1463836:-1 gene:PP1S77_277V6 transcript:PP1S77_277V6.1 | 2 | 258 | 0 | 5 | 5 | 2 | 5' TGCACTGCCTCTTCCCTGGCT 3' o|||||||||||||||||| o 3' GGTAGCGTGACGGAGAAGGGACCCGGTAAACA 5' |
1366 | Physcomitrella patens | AGAAGGGTCTACATCATAAAC | alignment | plot | GSM410805-5251 | PP1S475_5V6.1 cdna:known scaffold:ASM242v1:DS545354.1:54886:57989:1 gene:PP1S475_5V6 transcript:PP1S475_5V6.1 | 2 | 1142 | 0.01 | 2 | 0.4 | 2 | 5' AGAAGGGTCTACATCATAAAC 3' ||||||| |||||||| |||| 3' ATTATCTTCCCCGATGTAGTCTTTGCCTGAAA 5' |
1367 | Physcomitrella patens | TGGCCCATGCACAGTATCTACG | alignment | plot | GSM410805-5251 | PP1S77_113V6.1 cdna:novel scaffold:ASM242v1:DS544966.1:455191:464493:1 gene:PP1S77_113V6 transcript:PP1S77_113V6.1 | 2 | 1683 | 0.01 | 3 | 3 | 2.5 | 5' TGGCCCATGCACAGTATCTACG 3' ||||||||||||||||o|o| o 3' GTAGACCGGGTACGTGTCATGGGTATAGATGA 5' |
1368 | Physcomitrella patens | TATGTTGCAGATTCTTCATTT | alignment | plot | GSM410805-5251 | PP1S262_39V6.1 cdna:novel scaffold:ASM242v1:DS545151.1:281843:284517:1 gene:PP1S262_39V6 transcript:PP1S262_39V6.1 | 0 | 1085 | 0 | 21 | 21 | 3.5 | 5' TATGTTGCAGATTCTTCATTT 3' ||| |||||||||||||o | 3' TATGCTACTACGTCTAAGAAGTGCACGTGTTA 5' |
1369 | Physcomitrella patens | TGCATGACCGTCTCTTCCTGC | alignment | plot | GSM410805-5251 | PP1S20_21V6.1 cdna:known scaffold:ASM242v1:DS544909.1:98904:101764:1 gene:PP1S20_21V6 transcript:PP1S20_21V6.1 | 0 | 1903 | 0 | 793 | 396.5 | 3.5 | 5' TGCATGACCGTCTCTTCCTGC 3' ||||||| |||| |o||||| 3' CTGTTCGTACTGTCAGAAAGGGACGAAGTTCA 5' |
1370 | Physcomitrella patens | TTGCATGGAGTCTATGTCTGGA | alignment | plot | GSM410805-5251 | PP1S209_130V6.2 cdna:known scaffold:ASM242v1:DS545098.1:754290:759111:-1 gene:PP1S209_130V6 transcript:PP1S209_130V6.2 | 0 | 1004 | 0 | 660 | 220 | 2 | 5' TTGCATGGAGTCTATGTCTGGA 3' ||||||||||||||| ||||| 3' TTCCAACGTACCTCAGATAAAGACCGAAGCTT 5' |
1371 | Physcomitrella patens | CGTCTTCCTCTTCCTCTTCCT | alignment | plot | GSM410805-5251 | PP1S163_90V6.1 cdna:known scaffold:ASM242v1:DS545052.1:680865:682493:1 gene:PP1S163_90V6 transcript:PP1S163_90V6.1 | 1 | 40 | 0.02 | 16 | 16 | 2.5 | 5' CGTCTTCCTCTTCCTCTTCCT 3' ||o|o|||||o|||||o|||o 3' CGCGGCGGGAGGAGGAGGAGGAGGGGAGGGGA 5' |
1372 | Physcomitrella patens | TTCTTGCACTCCTCCATCTCT | alignment | plot | GSM410805-5251 | PP1S545_4V6.1 cdna:known scaffold:ASM242v1:DS545413.1:16259:19444:1 gene:PP1S545_4V6 transcript:PP1S545_4V6.1 | 2 | 1142 | 0.05 | 3568 | 3568 | 2.5 | 5' TTCTTGCACTCCTCCATCTCT 3' |||||||| ||||| |||||o 3' CCAAAAGAACGTAAGGAGCTAGAGGGAGTTGT 5' |
1373 | Physcomitrella patens | TGATGGTGATGCGCTTGTATC | alignment | plot | GSM410805-5251 | PP1S4_301V6.1 cdna:known scaffold:ASM242v1:DS544893.1:2000250:2000630:-1 gene:PP1S4_301V6 transcript:PP1S4_301V6.1 | 0 | 223 | 0 | 361 | 180.5 | 2 | 5' TGATGGTGATGCGCTTGTA-TC 3' ||||||||||||| ||||| || 3' AGTCACTACCACTACGCAAACATTAGGGTCTC 5' |
1374 | Physcomitrella patens | TTCTTGCACTCCTCCATCTCT | alignment | plot | GSM410805-5251 | PP1S459_10V6.1 cdna:known scaffold:ASM242v1:DS545339.1:132585:133622:1 gene:PP1S459_10V6 transcript:PP1S459_10V6.1 | 0 | 568 | 0 | 25755 | 5151 | 1.5 | 5' TTCTTGCACTCCTCCATCTCT 3' |||||||||||||| |||||o 3' CCAGAAGAACGTGAGGAGTTAGAGGGAGTTCT 5' |
1375 | Physcomitrella patens | TTGGACTGAAGGGAGCTCCAC | alignment | plot | GSM410805-5251 | PP1S135_34V6.1 cdna:known scaffold:ASM242v1:DS545024.1:271940:277802:1 gene:PP1S135_34V6 transcript:PP1S135_34V6.1 | 2 | 3508 | 0.04 | 2 | 2 | 3 | 5' TTGGACTGAAGGGAGCTCCAC 3' ||||| |||| | |||||||| 3' ATTTAACCTCACTTGCATCGAGGTGTCTGCTG 5' |
1376 | Physcomitrella patens | TTATGATGTAGATTCTTCAT | alignment | plot | GSM410805-5251 | PP1S105_81V6.1 cdna:known scaffold:ASM242v1:DS544994.1:546983:550759:1 gene:PP1S105_81V6 transcript:PP1S105_81V6.1 | 0 | 1748 | 0.01 | 6 | 6 | 3 | 5' TTATGATGTAGATTCTTCAT 3' o|||| ||o|||o||||||o 3' AAAAGATACAACGTCTGAGAAGTGGTCTAAGT 5' |
1377 | Physcomitrella patens | TGCCTGGCTCCTTGTATGCCA | alignment | plot | GSM410805-5251 | PP1S339_47V6.1 cdna:known scaffold:ASM242v1:DS545227.1:275729:278989:-1 gene:PP1S339_47V6 transcript:PP1S339_47V6.1 | 2 | 1472 | 0 | 2 | 1 | 2 | 5' TGCCTGGCTCCTTGTATGCCA 3' |||||||||||o||o||||| 3' TAGTACGGACCGAGGGACGTACGGACGTCTCC 5' |
1378 | Physcomitrella patens | GGTTCAAGTGAACAGGAAGA | alignment | plot | GSM410805-5251 | PP1S260_24V6.1 cdna:known scaffold:ASM242v1:DS545149.1:226444:230395:-1 gene:PP1S260_24V6 transcript:PP1S260_24V6.1 | 2 | 2107 | 0.05 | 2 | 2 | 2.5 | 5' GGTTCAAGTGAACAGGAAGA 3' oo||| ||||||||||||o| 3' CTATTTAAGGTCACTTGTCCTTTTGAGTTGAA 5' |
1379 | Physcomitrella patens | TCTCCCTCAAAGGCTTCCA | alignment | plot | GSM410805-5251 | PP1S248_7V6.1 cdna:known scaffold:ASM242v1:DS545137.1:70918:75836:-1 gene:PP1S248_7V6 transcript:PP1S248_7V6.1 | 0 | 3728 | 0 | 20 | 10 | 3 | 5' TCTCCCTCAAAGGCTTCCA 3' ||||||||||||| ||| 3' TCGTTGAGGGAGTTTCCGTAGGAAGTGAAGCC 5' |
1380 | Physcomitrella patens | TTCTTGCACTCCTCCATCTCT | alignment | plot | GSM410805-5251 | PP1S56_173V6.1 cdna:known scaffold:ASM242v1:DS544945.1:1196257:1197041:-1 gene:PP1S56_173V6 transcript:PP1S56_173V6.1 | 2 | 452 | 0.04 | 6 | 2 | 2.5 | 5' TTCTTGCACTCCTCCATCTCT 3' ||||||||||||| |||||o 3' GCAGCAGAACGTGAGGAGCTAGAGGGCGTCGT 5' |
1381 | Physcomitrella patens | ACACTCTCTCCATTTCTCTGC | alignment | plot | GSM410805-5251 | PP1S49_283V6.1 cdna:known scaffold:ASM242v1:DS544938.1:2081089:2083512:1 gene:PP1S49_283V6 transcript:PP1S49_283V6.1 | 2 | 534 | 0.05 | 2 | 0.666667 | 2.5 | 5' ACACTCTCTCCATTTCTCTGC 3' |||||||||||o|||||| | 3' CACAAGTGAGAGAGGTGAAGAGA-GCGACAAT 5' |
1382 | Physcomitrella patens | TATGTTGCAGATTCTTCATTT | alignment | plot | GSM410805-5251 | PP1S105_81V6.1 cdna:known scaffold:ASM242v1:DS544994.1:546983:550759:1 gene:PP1S105_81V6 transcript:PP1S105_81V6.1 | 2 | 1747 | 0.01 | 5 | 5 | 2.5 | 5' TATGTTGCAGATTCTTCATTT 3' |||||||||||o||||||oo 3' AAAGATACAACGTCTGAGAAGTGGTCTAAGTG 5' |
1383 | Physcomitrella patens | TGACCACCTTGATTCCGGCCT | alignment | plot | GSM410805-5251 | PP1S233_24V6.1 cdna:known scaffold:ASM242v1:DS545122.1:105627:110001:-1 gene:PP1S233_24V6 transcript:PP1S233_24V6.1 | 0 | 3088 | 0 | 4 | 4 | 4 | 5' TGACCACCTTGATTCCGGCCT 3' ||||||||||||| |o||o 3' CACCCCTGGTGGAACTAAAACTGGGTTGGAAG 5' |
1384 | Physcomitrella patens | TTGCATGGAGTCTATGTCTGGA | alignment | plot | GSM410805-5251 | PP1S55_304V6.2 cdna:known scaffold:ASM242v1:DS544944.1:1829258:1833155:-1 gene:PP1S55_304V6 transcript:PP1S55_304V6.2 | 0 | 1118 | 0 | 54516 | 13629 | 2.5 | 5' TTGCATGGAGTCTATGTCTGGA 3' ||||||||||||||| ||||o 3' TACAAACGTACCTCAGATA-AGACTGACACTT 5' |
1385 | Physcomitrella patens | TCTCCCTCAAAGGCTTCCA | alignment | plot | GSM410805-5251 | PP1S112_154V6.1 cdna:known scaffold:ASM242v1:DS545001.1:733541:736966:1 gene:PP1S112_154V6 transcript:PP1S112_154V6.1 | 2 | 1828 | 0.02 | 2 | 2 | 2 | 5' TCTCCCTCAAAGGCTTCCA 3' |||||||||||||| ||| 3' TGTTAGAGGGAGTTTCCGTAGGGGTAGGGCGT 5' |
1386 | Physcomitrella patens | TCTTTGGGTCTTTCTCTCCTG | alignment | plot | GSM410805-5251 | PP1S29_44V6.2 cdna:known scaffold:ASM242v1:DS544918.1:309069:313749:1 gene:PP1S29_44V6 transcript:PP1S29_44V6.2 | 0 | 872 | 0 | 73 | 36.5 | 1 | 5' TCTTTGGGTCTTTCTCTCCTG 3' ||||| ||||||||||||||| 3' AAAGAGAAA-CCAGAAAGAGAGGACTGAAGGA 5' |
1387 | Physcomitrella patens | GAGCTCAGGAGGGATAGCGCC | alignment | plot | GSM410805-5251 | PP1S91_47V6.1 cdna:novel scaffold:ASM242v1:DS544980.1:275335:275565:-1 gene:PP1S91_47V6 transcript:PP1S91_47V6.1 | 0 | 30 | 0 | 6 | 6 | 3.5 | 5' GAGCTCAGGAGGGATAGCGCC 3' |||||||||o|| ||||| | 3' AGGAATCGAGTCCTTCCAATCGCAGTCATCGA 5' |
1388 | Physcomitrella patens | TGAGCCGCGCCAATATCACAT | alignment | plot | GSM410805-5251 | PP1S205_1V6.1 cdna:known scaffold:ASM242v1:DS545094.1:3903:6350:-1 gene:PP1S205_1V6 transcript:PP1S205_1V6.1 | 0 | 1393 | 0 | 19 | 19 | 2 | 5' TGAGCCGCGCCAATATCACAT 3' ||||||||||||||||| | | 3' ACTAACTCGGCGCGGTTATAGCGAAATCGGTA 5' |
1389 | Physcomitrella patens | TTGCATGGAGTCTATGTCTGGA | alignment | plot | GSM410805-5251 | PP1S118_209V6.2 cdna:known scaffold:ASM242v1:DS545007.1:1023491:1026970:-1 gene:PP1S118_209V6 transcript:PP1S118_209V6.2 | 0 | 1204 | 0 | 42874 | 21437 | 1.5 | 5' TTGCATGGAGTCTATGTCTGGA 3' ||||||||||||||| ||||o| 3' TACAAACGTACCTCAGATA-AGACTTACACTA 5' |
1390 | Physcomitrella patens | TCTCCCTCAAAGGCTTCCA | alignment | plot | GSM410805-5251 | PP1S65_138V6.1 cdna:novel scaffold:ASM242v1:DS544954.1:780636:785346:-1 gene:PP1S65_138V6 transcript:PP1S65_138V6.1 | 1 | 902 | 0.02 | 3 | 3 | 3.5 | 5' TCTCCCTCAAAGGCTTCCA 3' ||| |||||||o|| ||| 3' ACCTAGA-GGAGTTTTCGCAGGGAGGCAGGGT 5' |
1391 | Physcomitrella patens | TTGAGCCGCGCCAATATCACA | alignment | plot | GSM410805-5251 | PP1S205_1V6.1 cdna:known scaffold:ASM242v1:DS545094.1:3903:6350:-1 gene:PP1S205_1V6 transcript:PP1S205_1V6.1 | 2 | 1394 | 0 | 14 | 14 | 2 | 5' TTGAGCCGCGCCAATATCACA 3' |||||||||||||||||| | 3' GACTAACTCGGCGCGGTTATAGCGAAATCGGT 5' |
1392 | Physcomitrella patens | TTCTTGCACTCCTCCATCTCT | alignment | plot | GSM410805-5251 | PP1S251_44V6.1 cdna:known scaffold:ASM242v1:DS545140.1:336620:337706:-1 gene:PP1S251_44V6 transcript:PP1S251_44V6.1 | 0 | 649 | 0 | 3489 | 3489 | 1.5 | 5' TTCTTGCACTCCTCCATCTCT 3' |||||||||||||| |||||o 3' CCAGAAGAACGTGAGGAGTTAGAGGGAGTTAT 5' |
1393 | Physcomitrella patens | TGACAGAAGAGAGTGAGCAC | alignment | plot | GSM410805-5251 | PP1S194_57V6.1 cdna:known scaffold:ASM242v1:DS545083.1:256580:259970:-1 gene:PP1S194_57V6 transcript:PP1S194_57V6.1 | 0 | 1741 | 0 | 205 | 102.5 | 1 | 5' TGACAGAAGAGAGTGAGCAC 3' ||||||||||||| |||||| 3' CGCTACTGTCTTCTCTCTCTCGTGCCGGTCTC 5' |
1394 | Physcomitrella patens | TCTTGTCAATGTTTAGGGGCA | alignment | plot | GSM410805-5251 | PP1S117_107V6.2 cdna:novel scaffold:ASM242v1:DS545006.1:792008:795035:1 gene:PP1S117_107V6 transcript:PP1S117_107V6.2 | 1 | 1293 | 0 | 5 | 5 | 4 | 5' TCTTGTCAATGTTTAGGGGCA 3' ||o||| |||||| ||| o|| 3' CGGAAGGACACTTACAATTCCATGTGTCACTT 5' |
1395 | Physcomitrella patens | TCCCAAATGTATACAAAGCC | alignment | plot | GSM410805-5251 | PP1S54_155V6.1 cdna:known scaffold:ASM242v1:DS544943.1:981461:984271:1 gene:PP1S54_155V6 transcript:PP1S54_155V6.1 | 2 | 1068 | 0.05 | 2 | 1 | 2.5 | 5' TCCCAAATGTATACAAAGCC 3' |||| ||||||o||||| || 3' ATCAAGGGATTACATGTGTTTAGGTGGATGTT 5' |
1396 | Physcomitrella patens | CTCACAGTCTGCACAGCTCTC | alignment | plot | GSM410805-5251 | PP1S838_1V6.1 cdna:novel scaffold:ASM242v1:DS545647.1:5153:7202:1 gene:PP1S838_1V6 transcript:PP1S838_1V6.1 | 1 | 691 | 0.01 | 2 | 1 | 4 | 5' CTCACAGTCTGCACAGCTCTC 3' |o| |||||||||| o |||| 3' CAGTGGGGGTCAGACGTGGTAAGAGGGTAACA 5' |
1397 | Physcomitrella patens | TCTGGTTGGATTGTAGGCCTC | alignment | plot | GSM410805-5251 | PP1S545_11V6.1 cdna:novel scaffold:ASM242v1:DS545413.1:53746:55931:-1 gene:PP1S545_11V6 transcript:PP1S545_11V6.1 | 0 | 1493 | 0.02 | 4 | 4 | 4 | 5' TCTGGTTGGATTGTAGGCCTC 3' |||||| ||||o|||| ||o 3' GTTCAGACCACCCTAGCATC-GGGCAAACTCA 5' |
1398 | Physcomitrella patens | TGATGGTGATGCGCTTGTATC | alignment | plot | GSM410805-5251 | PP1S77_81V6.1 cdna:novel scaffold:ASM242v1:DS544966.1:363971:365277:1 gene:PP1S77_81V6 transcript:PP1S77_81V6.1 | 2 | 554 | 0 | 5 | 5 | 1 | 5' TGATGGTGATGCGCTTGT-ATC 3' |||||||||||||||||| ||| 3' AGGCACTACCACTACGCGAACAATAGCGTCGT 5' |
1399 | Physcomitrella patens | CATCTTGGAGTACTGCATCTT | alignment | plot | GSM410805-5251 | PP1S93_114V6.1 cdna:known scaffold:ASM242v1:DS544982.1:1044093:1046509:1 gene:PP1S93_114V6 transcript:PP1S93_114V6.1 | 0 | 1850 | 0 | 306 | 306 | 3 | 5' CATCTTGGAGTACTGCATCTT 3' ||||| |||||| ||||||| 3' ACTACTAGAAGCTCATGCCGTAGAAAAAGTCT 5' |
1400 | Physcomitrella patens | TTGTAGAGTCATACACCTCT | alignment | plot | GSM410805-5251 | PP1S81_65V6.1 cdna:known scaffold:ASM242v1:DS544970.1:386049:390185:-1 gene:PP1S81_65V6 transcript:PP1S81_65V6.1 | 0 | 2754 | 0.02 | 54 | 54 | 4 | 5' TTGTAGAGTCATACACCTCT 3' ||||| ||||o| |||||o 3' GCAGTACATCCCAGTGTATGGAGGTATTTGAT 5' |
1401 | Physcomitrella patens | CTGAAGGAGTTCATTGGTACA | alignment | plot | GSM410805-5251 | PP1S38_312V6.1 cdna:known scaffold:ASM242v1:DS544927.1:1784879:1788350:-1 gene:PP1S38_312V6 transcript:PP1S38_312V6.1 | 2 | 1889 | 0.02 | 3 | 3 | 2.5 | 5' CTGAAGGAGTTCATTGGTACA 3' |||||||||||||o|| | || 3' ATCAGACTTCCTCAAGTGACGAAGTACTTTTC 5' |
1402 | Physcomitrella patens | TTTCCTGCCTCTCACTAGCTT | alignment | plot | GSM410805-5251 | PP1S504_4V6.1 cdna:known scaffold:ASM242v1:DS545378.1:10247:12549:-1 gene:PP1S504_4V6 transcript:PP1S504_4V6.1 | 1 | 1671 | 0.02 | 47 | 47 | 4 | 5' TTTCCTGCCTCTCACTAGCTT 3' ||||||||||| |||||| 3' GACGTAAGGACGGAGATGGATCGACGTTACGA 5' |
1403 | Physcomitrella patens | CCACTCTCTCCGTTTCCCTTCC | alignment | plot | GSM410805-5251 | PP1S180_108V6.1 cdna:known scaffold:ASM242v1:DS545069.1:700836:702986:-1 gene:PP1S180_108V6 transcript:PP1S180_108V6.1 | 1 | 1232 | 0.03 | 2 | 2 | 4 | 5' CCACTCTCTCCGTTTCCCTTCC 3' |||o||||||o||||||| | 3' GGGTAGTGGGAGAGGTAAAGGGA-GACGTATG 5' |
1404 | Physcomitrella patens | TTCGTGCCAAGCTGTGTGCA | alignment | plot | GSM410805-5251 | PP1S90_9V6.1 cdna:known scaffold:ASM242v1:DS544979.1:38888:43079:-1 gene:PP1S90_9V6 transcript:PP1S90_9V6.1 | 0 | 2039 | 0 | 73 | 73 | 2 | 5' TTCGTGCCAAGCTGTGTGCA 3' |||||||| |||||||| || 3' ATTTAAGCACGGGTCGACACAGGTGGTTCACT 5' |
1405 | Physcomitrella patens | TTATGATGTAGATTCTTCAT | alignment | plot | GSM410805-5251 | PP1S4_166V6.1 cdna:known scaffold:ASM242v1:DS544893.1:1202417:1205054:1 gene:PP1S4_166V6 transcript:PP1S4_166V6.1 | 0 | 1365 | 0 | 1347 | 1347 | 1 | 5' TTATGATGTAGATTCTTCAT 3' ||||||||o||||||||||o 3' GCTTAATACTACGTCTAAGAAGTGTCGATGCT 5' |
1406 | Physcomitrella patens | TGAATGATATTAACGTCCACG | alignment | plot | GSM410805-5251 | PP1S131_71V6.2 cdna:known scaffold:ASM242v1:DS545020.1:284420:287174:-1 gene:PP1S131_71V6 transcript:PP1S131_71V6.2 | 2 | 911 | 0 | 218 | 54.5 | 2 | 5' TGAATGATATTAACGTCCACG 3' ||||||||||| |||| |||| 3' TTCTACTTACTATAACTGCAAGTGCAACTCTC 5' |
1407 | Physcomitrella patens | TTGCGCGTGAATTTGAAGGCT | alignment | plot | GSM410805-5251 | PP1S65_226V6.3 cdna:known scaffold:ASM242v1:DS544954.1:1265650:1269721:1 gene:PP1S65_226V6 transcript:PP1S65_226V6.3 | 0 | 1533 | 0 | 676 | 169 | 3 | 5' TTGCGCGTGAATTTGAAGGCT 3' |||||||o||||| o||| || 3' TGTTAACGCGCGCTTAATTTTCAGAAATCTCC 5' |
1408 | Physcomitrella patens | TGCACTGCCTCTTCCCTGGCT | alignment | plot | GSM410805-5251 | PP1S227_44V6.2 cdna:known scaffold:ASM242v1:DS545116.1:306574:308835:1 gene:PP1S227_44V6 transcript:PP1S227_44V6.2 | 2 | 456 | 0.05 | 16 | 5.33333 | 2.5 | 5' TGCACTGCCTCTTCCCTG-GCT 3' |||||||| ||||||||| ||o 3' CGTAACGTGACGTAGAAGGGACTCGGTACCGC 5' |
1409 | Physcomitrella patens | TATGTCCATTGCAGTTGCATAC | alignment | plot | GSM410805-5251 | PP1S392_41V6.1 cdna:known scaffold:ASM242v1:DS545279.1:241557:245376:-1 gene:PP1S392_41V6 transcript:PP1S392_41V6.1 | 2 | 1326 | 0.01 | 2 | 2 | 3 | 5' TATGTCCATTGCAGTTGCATAC 3' ||||o||||||||||||||o 3' CTTGATACGGGTAACGTCAACGTGGACTTCGA 5' |
1410 | Physcomitrella patens | TATGTCCATTACAGTTGCATAC | alignment | plot | GSM410805-5251 | PP1S28_209V6.1 cdna:known scaffold:ASM242v1:DS544917.1:1287855:1290057:1 gene:PP1S28_209V6 transcript:PP1S28_209V6.1 | 0 | 987 | 0 | 4 | 4 | 2.5 | 5' TATGTCCATTACAGTTGCATAC 3' |||||||||| ||||||||o| 3' CGTGATACAGGTAACGTCAACGTGTTCATCGG 5' |
1411 | Physcomitrella patens | ACACTCTCTCCATTTCTCTGC | alignment | plot | GSM410805-5251 | PP1S13_145V6.1 cdna:known scaffold:ASM242v1:DS544902.1:1046333:1048755:1 gene:PP1S13_145V6 transcript:PP1S13_145V6.1 | 0 | 1833 | 0 | 30 | 30 | 2.5 | 5' ACACTCTCTCCATTTCTC-TGC 3' ||||||||||||o|||| ||| 3' GTGAAGTGAGAGAGGTAGAGAGTACGACTTGT 5' |
1412 | Physcomitrella patens | TATGATGCAGATTCTTCATCT | alignment | plot | GSM410805-5251 | PP1S4_166V6.1 cdna:known scaffold:ASM242v1:DS544893.1:1202417:1205054:1 gene:PP1S4_166V6 transcript:PP1S4_166V6.1 | 2 | 1364 | 0.01 | 186 | 186 | 2 | 5' TATGATGCAGATTCTTCATCT 3' |||||||||||||||||| | 3' CTTAATACTACGTCTAAGAAGT-GTCGATGCT 5' |
1413 | Physcomitrella patens | TCTCTCTCAACCAACCATAC | alignment | plot | GSM410805-5251 | PP1S47_331V6.1 cdna:known scaffold:ASM242v1:DS544936.1:2112084:2114662:-1 gene:PP1S47_331V6 transcript:PP1S47_331V6.1 | 1 | 1982 | 0 | 2 | 2 | 2.5 | 5' TCTCTCTCAACCAACCATAC 3' o||||||||||||||||| 3' TGAAGGAGAGAGTTGGTTGGTACCTGTGGGTG 5' |
1414 | Physcomitrella patens | TCTTAGATCTACAATGTCACA | alignment | plot | GSM410805-5251 | PP1S163_129V6.1 cdna:novel scaffold:ASM242v1:DS545052.1:922382:923413:-1 gene:PP1S163_129V6 transcript:PP1S163_129V6.1 | 1 | 219 | 0 | 2 | 2 | 2.5 | 5' TCTTAGATCTACAATGTCACA 3' ||||||||||||||||o| | 3' GACAAGAATCTAGATGTTACGGGCTTCTCCCT 5' |
1415 | Physcomitrella patens | TCTTAGATCTACAATGCCTCT | alignment | plot | GSM410805-5251 | PP1S163_129V6.1 cdna:novel scaffold:ASM242v1:DS545052.1:922382:923413:-1 gene:PP1S163_129V6 transcript:PP1S163_129V6.1 | 1 | 219 | 0 | 2 | 2 | 2 | 5' TCTTAGATCTACAATGCCTCT 3' |||||||||||||||||| | 3' GACAAGAATCTAGATGTTACGG-GCTTCTCCC 5' |
1416 | Physcomitrella patens | TGACAGAAGAGAGTGAGCAC | alignment | plot | GSM410805-5251 | PP1S142_146V6.1 cdna:known scaffold:ASM242v1:DS545031.1:1046714:1050562:-1 gene:PP1S142_146V6 transcript:PP1S142_146V6.1 | 0 | 1715 | 0 | 110 | 110 | 3 | 5' TGACAGA-AGAGAGTGAGCAC 3' |||||| |||||||||| || 3' CTGTCTGTCTGTCTCTCACTCTTGCTCCCCCA 5' |
1417 | Physcomitrella patens | TCTCCCTCAAAGGCTTCCA | alignment | plot | GSM410805-5251 | PP1S48_150V6.1 cdna:novel scaffold:ASM242v1:DS544937.1:1186304:1186936:-1 gene:PP1S48_150V6 transcript:PP1S48_150V6.1 | 0 | 166 | 0.01 | 3 | 3 | 3 | 5' TCTCCCTCAAAGGCTTCCA 3' |||||||||||| |||| 3' TAATAGAGGGAGTTTCGAAAGGCAGATGAACG 5' |
1418 | Physcomitrella patens | AGATTGACGAGTGCAAGAAGA | alignment | plot | GSM410805-5251 | PP1S249_56V6.2 cdna:known scaffold:ASM242v1:DS545138.1:324623:329162:-1 gene:PP1S249_56V6 transcript:PP1S249_56V6.2 | 1 | 2503 | 0.03 | 3 | 3 | 4 | 5' AGATTGAC-GAGTGCAAGAAGA 3' |||||| | ||o|||| |||o| 3' AGTTCTAACAGTCTTACGTACTTTTTTTGTGC 5' |
1419 | Physcomitrella patens | TGATGGTGATGCGCTTGTATC | alignment | plot | GSM410805-5251 | PP1S4_308V6.1 cdna:known scaffold:ASM242v1:DS544893.1:2050723:2051636:1 gene:PP1S4_308V6 transcript:PP1S4_308V6.1 | 0 | 429 | 0 | 361 | 180.5 | 2 | 5' TGATGGTGATGCGCTTGTA-TC 3' ||||||||||||| ||||| || 3' AGTCACTACCACTACGCAAACATTAGGGTCTC 5' |
1420 | Physcomitrella patens | ACACTCTCTCCATTTCTCTGC | alignment | plot | GSM410805-5251 | PP1S49_283V6.2 cdna:known scaffold:ASM242v1:DS544938.1:2081089:2083512:1 gene:PP1S49_283V6 transcript:PP1S49_283V6.2 | 2 | 440 | 0.04 | 2 | 0.666667 | 2.5 | 5' ACACTCTCTCCATTTCTCTGC 3' |||||||||||o|||||| | 3' CACAAGTGAGAGAGGTGAAGAGA-GCGAGCAA 5' |
1421 | Physcomitrella patens | TGAATGATATTAACGTCCACG | alignment | plot | GSM410805-5251 | PP1S144_8V6.1 cdna:known scaffold:ASM242v1:DS545033.1:55598:58669:-1 gene:PP1S144_8V6 transcript:PP1S144_8V6.1 | 0 | 2144 | 0 | 133 | 133 | 2.5 | 5' TGAATGATATTAACGTCCACG 3' o||||||o||o||||||||| 3' GAATGCTTACTGTAGTTGCAGGTGGACTGTCG 5' |
1422 | Physcomitrella patens | TGAATGATATTAACGTCCACG | alignment | plot | GSM410805-5251 | PP1S58_157V6.1 cdna:known scaffold:ASM242v1:DS544947.1:863228:867298:-1 gene:PP1S58_157V6 transcript:PP1S58_157V6.1 | 2 | 2124 | 0.04 | 2 | 1 | 3 | 5' TGAATGATATTAACGTCCACG 3' o||||||||||||||||| o 3' TGTGGCTTACTATAATTGCAGGCCTTTAACGA 5' |
1423 | Physcomitrella patens | TTGCTGTGCACTACTTAGTAC | alignment | plot | GSM410805-5251 | PP1S66_193V6.2 cdna:novel scaffold:ASM242v1:DS544955.1:915118:917696:1 gene:PP1S66_193V6 transcript:PP1S66_193V6.2 | 0 | 873 | 0 | 132 | 66 | 3.5 | 5' TTGCTGTGCACTACTTAGTAC 3' |||||||||||o| |||| | 3' AACGAACGACACGTGGTTAATCCAGTAGTAGA 5' |
1424 | Physcomitrella patens | GATGGGTTATCTCAAAGTGGA | alignment | plot | GSM410805-5251 | PP1S1_366V6.1 cdna:known scaffold:ASM242v1:DS544890.1:2269143:2269304:1 gene:PP1S1_366V6 transcript:PP1S1_366V6.1 | 0 | 79 | 0 | 3 | 3 | 4 | 5' GATGGGTTATCTCAA-AGTGGA 3' o||||o|o||| ||| |||o|| 3' GCCGTTACCTAGTAGTGTTGTCATCTCGCTAG 5' |
1425 | Physcomitrella patens | TTTCCTGCCTCTCACTAGCTT | alignment | plot | GSM410805-5251 | PP1S134_4V6.1 cdna:known scaffold:ASM242v1:DS545023.1:15064:17235:1 gene:PP1S134_4V6 transcript:PP1S134_4V6.1 | 0 | 1674 | 0.04 | 12 | 12 | 4 | 5' TTTCCTGCCTCTCACTAGCTT 3' ||||||||||| |||||| 3' TATGTAAGGACGGAGATGGATCGACGTCAATC 5' |
1426 | Physcomitrella patens | TGTGTGTTCCGCTTCTTCTTT | alignment | plot | GSM410805-5251 | PP1S22_5V6.1 cdna:known scaffold:ASM242v1:DS544911.1:18974:20621:-1 gene:PP1S22_5V6 transcript:PP1S22_5V6.1 | 0 | 1388 | 0 | 66 | 66 | 2.5 | 5' TGTGTGTTCCGCTTCTTCTTT 3' |||||||||||||||||| o 3' AAATACACACAAGGCGAAGAAGCGCCAAATCT 5' |
1427 | Physcomitrella patens | TGAATGATATTAACGTCCACG | alignment | plot | GSM410805-5251 | PP1S308_11V6.1 cdna:known scaffold:ASM242v1:DS545197.1:269783:272152:-1 gene:PP1S308_11V6 transcript:PP1S308_11V6.1 | 2 | 2006 | 0.01 | 31 | 31 | 3 | 5' TGAATGATATTAACGTCCACG 3' o||||||||||||||o|| | 3' AAGGGCTTACTATAATTGCGGGAGGCACGTAG 5' |
1428 | Physcomitrella patens | TTTTCGGGTGAGAGTGGTCCT | alignment | plot | GSM410805-5251 | PP1S1_206V6.1 cdna:known scaffold:ASM242v1:DS544890.1:1310411:1315271:1 gene:PP1S1_206V6 transcript:PP1S1_206V6.1 | 2 | 1936 | 0 | 2 | 2 | 2.5 | 5' TTTTCGGGTGAGAGTGGTCCT 3' |||||||o|||| |o|||||o 3' AAAGAAAAGCCTACTCACGCCAGGGCCACCTA 5' |
1429 | Physcomitrella patens | TCATGGTCGTGATCATGGTTG | alignment | plot | GSM410805-5251 | PP1S31_130V6.1 cdna:novel scaffold:ASM242v1:DS544920.1:698981:703414:-1 gene:PP1S31_130V6 transcript:PP1S31_130V6.1 | 2 | 1167 | 0 | 12 | 12 | 1.5 | 5' TCATGGTCGTGATCATGGTTG 3' ||||||||||| |||||||o| 3' CACCAGTACCAGCACCAGTACCAGCACTGACA 5' |
1430 | Physcomitrella patens | TTCGTGCCAAGCTGTGTGCA | alignment | plot | GSM410805-5251 | PP1S267_8V6.1 cdna:known scaffold:ASM242v1:DS545156.1:70563:71817:-1 gene:PP1S267_8V6 transcript:PP1S267_8V6.1 | 0 | 289 | 0 | 24 | 24 | 2.5 | 5' TTCGTGCCAAGCTGTGTGCA 3' |||||||||||| o||||| 3' CGCGTAGCACGGTTCGAGGCACGTAGGTTCTC 5' |
1431 | Physcomitrella patens | TTGCATGGAGTCTATGTCTGGA | alignment | plot | GSM410805-5251 | PP1S78_222V6.1 cdna:known scaffold:ASM242v1:DS544967.1:1504432:1507501:1 gene:PP1S78_222V6 transcript:PP1S78_222V6.1 | 0 | 1458 | 0.01 | 182 | 182 | 3.5 | 5' TTGCATGGAGTCTATGTCTGGA 3' |||||o||||||||||o|o | 3' TCCTAACGTGCCTCAGATACGGGACAAACTTC 5' |
1432 | Physcomitrella patens | TGACAGAAGAGAGTGAGCAC | alignment | plot | GSM410805-5251 | PP1S17_236V6.1 cdna:novel scaffold:ASM242v1:DS544906.1:1533196:1534667:-1 gene:PP1S17_236V6 transcript:PP1S17_236V6.1 | 2 | 532 | 0 | 7 | 2.33333 | 1.5 | 5' TGACAGAAGAGAGTGAGCAC 3' ||||||||o||||||| ||| 3' TCGAACTGTCTTTTCTCACTAGTGTTCCCTGT 5' |
1433 | Physcomitrella patens | TTGCGCGTGAATTTGAAGGCT | alignment | plot | GSM410805-5251 | PP1S136_98V6.1 cdna:known scaffold:ASM242v1:DS545025.1:636928:639842:-1 gene:PP1S136_98V6 transcript:PP1S136_98V6.1 | 0 | 660 | 0 | 38 | 38 | 3.5 | 5' TTGCGCGTGAATTTGAAGGCT 3' ||||||||||||||| ||o 3' ATTGAACGCGCACTTAAACCTCTCTGAGTTCG 5' |
1434 | Physcomitrella patens | TTCGTGCCAAGCTGTGTGCA | alignment | plot | GSM410805-5251 | PP1S10_319V6.1 cdna:known scaffold:ASM242v1:DS544899.1:2497693:2499736:-1 gene:PP1S10_319V6 transcript:PP1S10_319V6.1 | 2 | 396 | 0.04 | 5 | 5 | 2.5 | 5' TTCGTGCCAAGCTGTGTGCA 3' |||o||||||||| | |||| 3' CCCGAAGTACGGTTCGAAA-ACGTACCGGAAG 5' |
1435 | Physcomitrella patens | TGACCACCTTGATTCCGGCCT | alignment | plot | GSM410805-5251 | PP1S46_110V6.3 cdna:known scaffold:ASM242v1:DS544935.1:995497:1001219:-1 gene:PP1S46_110V6 transcript:PP1S46_110V6.3 | 2 | 2187 | 0.02 | 6 | 2 | 3 | 5' TGACCACCTTGATTCCGGCCT 3' ||||| ||||||||||o|| o 3' TCGGACTGGAGGAACTAAGGTCGTGCAGGGCC 5' |
1436 | Physcomitrella patens | TTCTTGCACTCCTCCATCTCT | alignment | plot | GSM410805-5251 | PP1S109_145V6.1 cdna:known scaffold:ASM242v1:DS544998.1:906778:907714:1 gene:PP1S109_145V6 transcript:PP1S109_145V6.1 | 0 | 518 | 0 | 25755 | 5151 | 1.5 | 5' TTCTTGCACTCCTCCATCTCT 3' |||||||||||||| |||||o 3' CCAGAAGAACGTGAGGAGTTAGAGGGAGTTGT 5' |
1437 | Physcomitrella patens | TGAATGATATTAACGTCCACG | alignment | plot | GSM410805-5251 | PP1S131_153V6.1 cdna:known scaffold:ASM242v1:DS545020.1:781375:784642:1 gene:PP1S131_153V6 transcript:PP1S131_153V6.1 | 0 | 1316 | 0 | 447 | 223.5 | 2 | 5' TGAATGATATTAACGTCCACG 3' ||||||||||| |||| |||| 3' TATTACTTACTATAACTGCAAGTGCAACTCTC 5' |
1438 | Physcomitrella patens | TTGCGCGTGAATTTGAAGGCT | alignment | plot | GSM410805-5251 | PP1S264_55V6.1 cdna:known scaffold:ASM242v1:DS545153.1:436103:438845:1 gene:PP1S264_55V6 transcript:PP1S264_55V6.1 | 0 | 1123 | 0 | 6570 | 6570 | 3.5 | 5' TTGCGCGTGAATTTGAAGGCT 3' |||||o|||| |||||oo|| 3' TGTTCACGCGTACTTCAACTTTTGACAGATGT 5' |
1439 | Physcomitrella patens | TGACAGAAGAGAGTGAGCAC | alignment | plot | GSM410805-5251 | PP1S50_125V6.1 cdna:known scaffold:ASM242v1:DS544939.1:1240965:1243861:-1 gene:PP1S50_125V6 transcript:PP1S50_125V6.1 | 0 | 1566 | 0 | 205 | 102.5 | 1 | 5' TGACAGAAGAGAGTGAGCAC 3' ||||||||||||| |||||| 3' CGCTACTGTCTTCTCTCTCTCGTGCTGGTCAC 5' |
1440 | Physcomitrella patens | TTCTTGCACTCCTCCATCTCT | alignment | plot | GSM410805-5251 | PP1S12_231V6.1 cdna:known scaffold:ASM242v1:DS544901.1:1365802:1367197:-1 gene:PP1S12_231V6 transcript:PP1S12_231V6.1 | 0 | 574 | 0 | 1092 | 1092 | 1.5 | 5' TTCTTGCACTCCTCCATCTCT 3' |||||||||||||| |||||o 3' CCAAAAGAACGTGAGGAGCTAGAGGGAGTTGT 5' |
1441 | Physcomitrella patens | CCTTCAACTTCATGCGTGCA | alignment | plot | GSM410805-5251 | PP1S414_8V6.1 cdna:known scaffold:ASM242v1:DS545298.1:71291:75557:1 gene:PP1S414_8V6 transcript:PP1S414_8V6.1 | 2 | 687 | 0.05 | 5 | 5 | 2.5 | 5' CCTTCAA-CTTCATGCGTGCA 3' ||o|||| | ||||||||||| 3' TTTGGGAGTTGGTAGTACGCACGTATACGTCA 5' |
1442 | Physcomitrella patens | TTCTTGCACTCCTCCATCTCT | alignment | plot | GSM410805-5251 | PP1S46_42V6.1 cdna:known scaffold:ASM242v1:DS544935.1:471232:472221:1 gene:PP1S46_42V6 transcript:PP1S46_42V6.1 | 0 | 568 | 0 | 21216 | 21216 | 1.5 | 5' TTCTTGCACTCCTCCATCTCT 3' |||||||||||||| |||||o 3' TCAGAAGAACGTGAGGAGTTAGAGGGAGTCCT 5' |
1443 | Physcomitrella patens | TTCTTGCACTCCTCCATCTCT | alignment | plot | GSM410805-5251 | PP1S339_15V6.1 cdna:known scaffold:ASM242v1:DS545227.1:82462:83283:1 gene:PP1S339_15V6 transcript:PP1S339_15V6.1 | 0 | 434 | 0 | 40 | 40 | 1.5 | 5' TTCTTGCACTCCTCCATCTCT 3' |||||||||||||| |||||o 3' GCAGAAGAACGTGAGGAGCTAGAGGGAGTTGT 5' |
1444 | Physcomitrella patens | TGACAACGAGAGAGAGCACGC | alignment | plot | GSM410805-5251 | PP1S50_125V6.1 cdna:known scaffold:ASM242v1:DS544939.1:1240965:1243861:-1 gene:PP1S50_125V6 transcript:PP1S50_125V6.1 | 2 | 1565 | 0.04 | 28 | 14 | 3 | 5' TGACA-ACGAGAGAGAGCACGC 3' ||||| | ||||||||||||| 3' GCTACTGTCTTCTCTCTCTCGTGCTGGTCACA 5' |
1445 | Physcomitrella patens | ACACTCTCTCCATTTCTCTGC | alignment | plot | GSM410805-5251 | PP1S49_283V6.3 cdna:known scaffold:ASM242v1:DS544938.1:2081089:2083512:1 gene:PP1S49_283V6 transcript:PP1S49_283V6.3 | 2 | 447 | 0.04 | 2 | 0.666667 | 2.5 | 5' ACACTCTCTCCATTTCTCTGC 3' |||||||||||o|||||| | 3' CACAAGTGAGAGAGGTGAAGAGA-GCGACAAT 5' |
1446 | Physcomitrella patens | TTCTTGCACTCCTCCATCTCT | alignment | plot | GSM410805-5251 | PP1S352_14V6.1 cdna:known scaffold:ASM242v1:DS545240.1:102740:103698:-1 gene:PP1S352_14V6 transcript:PP1S352_14V6.1 | 0 | 516 | 0 | 25755 | 5151 | 1.5 | 5' TTCTTGCACTCCTCCATCTCT 3' |||||||||||||| |||||o 3' CCAGAAGAACGTGAGGAGTTAGAGGGAGTTGT 5' |
1447 | Physcomitrella patens | CCACTCTCTCCGTTTCCCTTCC | alignment | plot | GSM410805-5251 | PP1S4_174V6.1 cdna:known scaffold:ASM242v1:DS544893.1:1238882:1242329:-1 gene:PP1S4_174V6 transcript:PP1S4_174V6.1 | 0 | 1834 | 0 | 6886 | 6886 | 3 | 5' CCACTCTCTCCGTTTCCCTTCC 3' |||||||||||||||| | || 3' AAGTAGTGAGAGAGGCAAAGG-ACGGGGAACA 5' |
1448 | Physcomitrella patens | ACACTCTCTCCATTTCTCTGC | alignment | plot | GSM410805-5251 | PP1S4_174V6.1 cdna:known scaffold:ASM242v1:DS544893.1:1238882:1242329:-1 gene:PP1S4_174V6 transcript:PP1S4_174V6.1 | 0 | 1834 | 0.01 | 6886 | 6886 | 3 | 5' ACACTCTCTCCATTTCTCTGC 3' |||||||||| |||| |||| 3' AAGTAGTGAGAGAGGCAAAG-GACGGGGAACA 5' |
1449 | Physcomitrella patens | TTTCTATCTTCTCTTCCAATC | alignment | plot | GSM410805-5251 | PP1S809_2V6.1 cdna:novel scaffold:ASM242v1:DS545619.1:11990:14182:1 gene:PP1S809_2V6 transcript:PP1S809_2V6.1 | 1 | 115 | 0 | 2 | 2 | 2 | 5' TTTCTATCTTCTCTTCCAATC 3' |||||||||||||||||| | 3' TTAGAAAGATAGAAGAGAAGGTGATTAGAATA 5' |
1450 | Physcomitrella patens | TGAAAGTCCTTCACAAACAAC | alignment | plot | GSM410805-5251 | PP1S9_288V6.3 cdna:known scaffold:ASM242v1:DS544898.1:2018965:2020418:1 gene:PP1S9_288V6 transcript:PP1S9_288V6.3 | 0 | 54 | 0.01 | 7 | 3.5 | 3.5 | 5' TGAAAGTCCTTCACAAACAAC 3' o|||o||||o||||||| || 3' TTTTCTTTTTAGGAGGTGTTTGGTGGTTTTCG 5' |
1451 | Physcomitrella patens | TGACAGAAGAGAGTGAGCAC | alignment | plot | GSM410805-5251 | PP1S194_53V6.1 cdna:known scaffold:ASM242v1:DS545083.1:250978:253882:-1 gene:PP1S194_53V6 transcript:PP1S194_53V6.1 | 0 | 1401 | 0 | 52 | 52 | 1 | 5' TGACAGAAGAGAGTGAGCAC 3' ||||||||||||| |||||| 3' CGTTACTGTCTTCTCTCTCTCGTGCCGGTCTC 5' |
1452 | Physcomitrella patens | TACTATGAGAATCTCGCGGCC | alignment | plot | GSM410805-5251 | PP1S310_52V6.1 cdna:novel scaffold:ASM242v1:DS545199.1:405418:408410:1 gene:PP1S310_52V6 transcript:PP1S310_52V6.1 | 0 | 1486 | 0 | 30 | 15 | 3.5 | 5' TACTATGAGAATCTCGCGGCC 3' |||||||||||||| ||o| 3' CGCCATGATACTCTTAGA-CGTCCCAATTACC 5' |
1453 | Physcomitrella patens | TGGCATTGTAGGTTTAAGAGC | alignment | plot | GSM410805-5251 | PP1S11_231V6.1 cdna:known scaffold:ASM242v1:DS544900.1:1897397:1904060:1 gene:PP1S11_231V6 transcript:PP1S11_231V6.1 | 0 | 1861 | 0 | 83 | 83 | 3 | 5' TGGCATTGTAGGTTTAAGAGC 3' |||||||| ||||o|||||o 3' GATTACCGTAACCTCCAGATTCTTTAGTGTGT 5' |
1454 | Physcomitrella patens | TGACAACGAGAGAGAGCACGC | alignment | plot | GSM410805-5251 | PP1S194_53V6.1 cdna:known scaffold:ASM242v1:DS545083.1:250978:253882:-1 gene:PP1S194_53V6 transcript:PP1S194_53V6.1 | 2 | 1400 | 0.03 | 5 | 5 | 3 | 5' TGACA-ACGAGAGAGAGCACGC 3' ||||| | ||||||||||||| 3' GTTACTGTCTTCTCTCTCTCGTGCCGGTCTCA 5' |
1455 | Physcomitrella patens | TATGTCCATTACAGTTGCATAC | alignment | plot | GSM410805-5251 | PP1S36_325V6.1 cdna:known scaffold:ASM242v1:DS544925.1:2156476:2159302:1 gene:PP1S36_325V6 transcript:PP1S36_325V6.1 | 0 | 1056 | 0 | 153 | 153 | 3.5 | 5' TATGTCCATTACAGTTGCATAC 3' |||||||||| ||||||||o 3' CGTGATACAGGTAACGTCAACGTGGCCATTGA 5' |
1456 | Physcomitrella patens | TGCATGACCGTCTCTTCCTGC | alignment | plot | GSM410805-5251 | PP1S166_97V6.1 cdna:known scaffold:ASM242v1:DS545055.1:661682:665473:-1 gene:PP1S166_97V6 transcript:PP1S166_97V6.1 | 2 | 1899 | 0.01 | 23 | 23 | 2.5 | 5' TGC-ATGACCGTCTCTTCCTGC 3' ||| ||||||| ||||||||o| 3' GTGACGTTACTGGCTGAGAAGGATGATACGAA 5' |
1457 | Physcomitrella patens | TTCTTGCACTCCTCCATCTCT | alignment | plot | GSM410805-5251 | PP1S66_47V6.1 cdna:known scaffold:ASM242v1:DS544955.1:188370:189289:1 gene:PP1S66_47V6 transcript:PP1S66_47V6.1 | 0 | 529 | 0 | 25755 | 5151 | 2.5 | 5' TTCTTGCACTCCTCCATCTCT 3' ||||||||||| || |||||o 3' CCAGAAGAACGTGAGAAGCTAGAGGGAGTTGT 5' |
1458 | Physcomitrella patens | TTCGTGCCAAGCTGTGTGCA | alignment | plot | GSM410805-5251 | PP1S122_100V6.1 cdna:known scaffold:ASM242v1:DS545011.1:765910:767724:1 gene:PP1S122_100V6 transcript:PP1S122_100V6.1 | 2 | 334 | 0.05 | 11 | 11 | 2.5 | 5' TTCGTGCCAAGCTGTGTGCA 3' |||o||||||||| | |||| 3' ACCAAAGTACGGTTCGAAA-ACGTACCGGAAG 5' |
1459 | Physcomitrella patens | TATGATGCAGATTCTTCATCT | alignment | plot | GSM410805-5251 | PP1S371_62V6.1 cdna:known scaffold:ASM242v1:DS545258.1:311162:313926:1 gene:PP1S371_62V6 transcript:PP1S371_62V6.1 | 2 | 1088 | 0.02 | 6 | 6 | 2.5 | 5' TATGATGCAGATTCTTCATCT 3' |||||||||||||||||o | 3' TACGCTACTACGTCTAAGAAGTGCATGAGTTA 5' |
1460 | Physcomitrella patens | TCTCCCTCAAAGGCTTCCA | alignment | plot | GSM410805-5251 | PP1S78_141V6.1 cdna:known scaffold:ASM242v1:DS544967.1:860994:863829:1 gene:PP1S78_141V6 transcript:PP1S78_141V6.1 | 0 | 2288 | 0 | 20 | 10 | 3 | 5' TCTCCCTCAAAGGCTTCCA 3' ||||||||||||| ||| 3' TCGTTGAGGGAGTTTCCGTAGGAAGTGATGCC 5' |
1461 | Physcomitrella patens | TTCGTGCCAAGCTGTGTGCA | alignment | plot | GSM410805-5251 | PP1S184_64V6.1 cdna:known scaffold:ASM242v1:DS545073.1:411877:413029:-1 gene:PP1S184_64V6 transcript:PP1S184_64V6.1 | 2 | 875 | 0 | 125 | 125 | 2 | 5' TTCGTGCCAAGCTGTGTGCA 3' |||||o|||||||| ||o|| 3' AATAAAGCATGGTTCGACTCATGTCTTTATAA 5' |
1462 | Physcomitrella patens | TTGCATGGAGTCTATGTCTGGA | alignment | plot | GSM410805-5251 | PP1S267_56V6.1 cdna:known scaffold:ASM242v1:DS545156.1:347789:352289:1 gene:PP1S267_56V6 transcript:PP1S267_56V6.1 | 0 | 1852 | 0 | 54516 | 13629 | 1.5 | 5' TTGCATGGAGTCTATGTCTGGA 3' ||||||||||||||| ||||o| 3' TACAAACGTACCTCAGATA-AGACTTACACTT 5' |
1463 | Physcomitrella patens | ACAGTCTCTGACTTCTCGCAG | alignment | plot | GSM410805-5251 | PP1S33_92V6.1 cdna:novel scaffold:ASM242v1:DS544922.1:537516:541093:1 gene:PP1S33_92V6 transcript:PP1S33_92V6.1 | 0 | 1066 | 0 | 14 | 14 | 4 | 5' ACAGTCTCTGACTTCTCGCAG 3' ||||||||||||||||o o 3' TAGAAGTCAGAGACTGAAGAGTAGTCGGAAAA 5' |
1464 | Physcomitrella patens | GCACAAATATGCACTACAAAC | alignment | plot | GSM410805-5251 | PP1S11_129V6.1 cdna:known scaffold:ASM242v1:DS544900.1:1022091:1025077:-1 gene:PP1S11_129V6 transcript:PP1S11_129V6.1 | 2 | 1671 | 0.04 | 6 | 6 | 3 | 5' GCAC-AAATATGCACTACAAAC 3' |||| ||| ||||| ||||||| 3' CTACGTGTTTTCTACGTAATGTTTGAGTCCGA 5' |
1465 | Physcomitrella patens | TTGCTGTGCACTACTTAGTAC | alignment | plot | GSM410805-5251 | PP1S123_164V6.1 cdna:known scaffold:ASM242v1:DS545012.1:1209167:1214007:1 gene:PP1S123_164V6 transcript:PP1S123_164V6.1 | 0 | 1773 | 0 | 24 | 24 | 3 | 5' TTGCTGTGCACTACTTAGTAC 3' |||||||||| |||||| || 3' ATGCTACGACACGTGTTGAATCTTGGAGGTGA 5' |
1466 | Physcomitrella patens | TTGTAGAGTCATGCACCTCTG | alignment | plot | GSM410805-5251 | PP1S301_53V6.1 cdna:known scaffold:ASM242v1:DS545190.1:510354:517593:1 gene:PP1S301_53V6 transcript:PP1S301_53V6.1 | 2 | 1884 | 0.04 | 7 | 7 | 3 | 5' TTGTAGAGTCATGCACCTCTG 3' ||||o|||||||||| ||o| 3' AAACTACATTTCAGTACGTG-AGGCGGTAAGT 5' |
1467 | Prunus persica | TGACAGAAGAAAGAGAGCAC | alignment | plot | GSM944975_peach_deg_proc | ppa024285m|PACid:17667981 | 0 | 822 | 0 | 74 | 74 | 1 | 5' TGACAGAAGAAAGAGAGCAC 3' |||||||||| ||||||||| 3' ACCTACTGTCTTCTCTCTCTCGTGCAGGACAG 5' |
1468 | Prunus persica | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM944975_peach_deg_proc | ppa019752m|PACid:17661717 | 0 | 716 | 0 | 38 | 38 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' ACTAAGGTGTCCGAAAGAACTTGCCCCGGCCG 5' |
1469 | Prunus persica | GCTCTTCCTCTTCTTCTTCTT | alignment | plot | GSM944975_peach_deg_proc | ppa016948m|PACid:17663461 | 1 | 988 | 0.02 | 2 | 1 | 3 | 5' GCTCTTCCTCTTCTTCTTCTT 3' ||||||||| |||||||| | 3' AGAAGGAGAAGGAGTAGAAGAAGTACGAGAAG 5' |
1470 | Prunus persica | CGCATTTTCTCAGCAGCCAAA | alignment | plot | GSM944975_peach_deg_proc | ppa015622m|PACid:17652070 | 0 | 856 | 0.02 | 17 | 17 | 3.5 | 5' CGCATTTTCTCAGCAGCCAAA 3' |||o||o|| ||||o||||| 3' CTACACGTGAAGGATTCGTTGGTTTAGTTCGC 5' |
1471 | Prunus persica | TTGACAGAAGAAAGAGAGCAC | alignment | plot | GSM944975_peach_deg_proc | ppa009978m|PACid:17660388 | 0 | 164 | 0.04 | 101 | 101 | 4 | 5' TTGACAGAAGAAAGAGAGCAC 3' || |||| |||| ||||| || 3' CTCTAA-TGTCCTCTTCCTCTCTTGACTCATT 5' |
1472 | Prunus persica | TGACAGAAGAAAGAGAGCAC | alignment | plot | GSM944975_peach_deg_proc | ppa012607m|PACid:17657139 | 2 | 790 | 0 | 57 | 57 | 1 | 5' TGACAGAAGAAAGAGAGCAC 3' |||||||||| ||||||||| 3' CCTAACTGTCTTCTCTCTCTCGTGCGATCCGA 5' |
1473 | Prunus persica | CTTTGTATTCTTCCACAGCTT | alignment | plot | GSM944975_peach_deg_proc | ppa003603m|PACid:17654922 | 2 | 997 | 0 | 13 | 13 | 3 | 5' CTTTGTATTCTTCCACAGCTT 3' | ||||| ||o||||||||o| 3' TCTTG-AACATTAGGAGGTGTCGGAAGTGAAG 5' |
1474 | Prunus persica | TTGACAGAAGAAAGAGAGCAC | alignment | plot | GSM944975_peach_deg_proc | ppa012607m|PACid:17657139 | 2 | 791 | 0 | 94 | 94 | 1 | 5' TTGACAGAAGAAAGAGAGCAC 3' ||||||||||| ||||||||| 3' TCCTAACTGTCTTCTCTCTCTCGTGCGATCCG 5' |
1475 | Prunus persica | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM944975_peach_deg_proc | ppa011917m|PACid:17645498 | 0 | 368 | 0 | 158 | 158 | 1 | 5' TTCCAC-AGCTTTCTTGAAC 3' |||||| ||||||||||||| 3' ACTAAGGTGTTCGAAAGAACTTGCTATCGCTG 5' |
1476 | Prunus persica | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM944975_peach_deg_proc | ppa017355m|PACid:17663192 | 1 | 198 | 0 | 12 | 12 | 2.5 | 5' TTCCACAGCTTTCTTGAAC 3' o||||||||||||||| | 3' ATCTGAGGTGTCGAAAGAACCCGAGAAAGTAC 5' |
1477 | Prunus persica | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM944975_peach_deg_proc | ppa021277m|PACid:17660357 | 0 | 452 | 0 | 439 | 439 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' TAAAAGGTGTCCGAAAGAACTTGCGACCGCCG 5' |
1478 | Prunus persica | TGCACTGCCTCTTCCCTGGC | alignment | plot | GSM944975_peach_deg_proc | ppa018507m|PACid:17644136 | 2 | 18 | 0 | 20 | 20 | 1 | 5' TGCACTGCCTCTTCCCTGGC 3' |||||||||||||||||| | 3' AAGGACGTGACGGAGAAGGGAC-GAGTCTGT 5' |
1479 | Prunus persica | TGCACTGCCTCTTCCCTGGC | alignment | plot | GSM944975_peach_deg_proc | ppa021383m|PACid:17655177 | 2 | 15 | 0 | 60 | 60 | 1.5 | 5' TGCACTGCCTCTTCCCTGGC 3' |||||||||||| |||||o| 3' GGGGACGTGACGGAGATGGGACTGGGTA 5' |
1480 | Prunus persica | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM944975_peach_deg_proc | ppa022199m|PACid:17660548 | 0 | 383 | 0 | 557 | 557 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' ACTAAGGTGTCCGAAAGAACTTGCCAACGCCG 5' |
1481 | Prunus persica | TTGAGCCGTGCCAATATCA | alignment | plot | GSM944975_peach_deg_proc | ppa001781m|PACid:17656366 | 2 | 1286 | 0 | 17 | 17 | 1.5 | 5' TTGAGCCGTGCCAATATCA 3' ||||||||o||||||||| 3' CACTAACTCGGCGCGGTTATAGGGAACGCGCT 5' |
1482 | Prunus persica | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM944975_peach_deg_proc | ppa006753m|PACid:17662613 | 2 | 921 | 0.05 | 9 | 9 | 2 | 5' TTCCACAGCT-TTCTTGAAC 3' |||||||||| ||||||| | 3' CGTCAAGGTGTCGACAAGAACTAGCGTACACC 5' |
1483 | Prunus persica | TTCCACAGCTTTCTTGAAC | alignment | plot | GSM944975_peach_deg_proc | ppa024293m|PACid:17651902 | 2 | 569 | 0 | 14 | 14 | 1 | 5' TTCCACA-GCTTTCTTGAAC 3' ||||||| |||||||||||| 3' TTGAAGGTGTACGAAAGAACTTGCCCCTGCCG 5' |
1484 | Solanum lycopersicum | TTTGGATTGAAGGGAGCTC | alignment | plot | GSM553688-9229 | Solyc06g073640.2.1 cdna:known chromosome:SL2.40:6:41820787:41825280:-1 gene:Solyc06g073640.2 transcript:Solyc06g073640.2.1 | 0 | 1054 | 0 | 116 | 116 | 1 | 5' TTTGGATTGAAGGGAGCTC 3' |||||| |||||||||||| 3' CATGAAACCTCACTTCCCTCGAGCTCGAAGAA 5' |
1485 | Solanum lycopersicum | TGATTGAGCCGTGCCAATATC | alignment | plot | GSM553688-9229 | Solyc08g078800.1.1 cdna:novel chromosome:SL2.40:8:59683241:59684665:-1 gene:Solyc08g078800.1 transcript:Solyc08g078800.1.1 | 0 | 407 | 0 | 45 | 45 | 0.5 | 5' TGATTGAGCCGTGCCAATATC 3' |||||||||||o||||||||| 3' GACAACTAACTCGGCGCGGTTATAGTAAACGC 5' |
1486 | Solanum lycopersicum | TCGCTTGGTGCAGGTCGGGAC | alignment | plot | GSM553688-9229 | Solyc06g072300.2.1 cdna:known chromosome:SL2.40:6:40960724:40969540:-1 gene:Solyc06g072300.2 transcript:Solyc06g072300.2.1 | 2 | 388 | 0 | 20 | 20 | 3 | 5' TCGCTTGGTGCAGGTCGGGAC 3' | ||||||||||| |||||| 3' AGTCAACGAACCACGTCGAGCCCTTGACCACC 5' |
1487 | Solanum lycopersicum | AGAATCTTGATGATGCTGCAT | alignment | plot | GSM553688-9229 | Solyc10g084340.1.1 cdna:novel chromosome:SL2.40:10:63251955:63255101:-1 gene:Solyc10g084340.1 transcript:Solyc10g084340.1.1 | 0 | 1252 | 0 | 46 | 46 | 2.5 | 5' AGAATCTTGATGATGCTGCAT 3' |||||o||||||||||||| 3' AAAGGCTTAGGACTACTACGACGTCATCTCTT 5' |
1488 | Solanum lycopersicum | TGAAGCTGCCAGCATGATCT | alignment | plot | GSM553688-9229 | Solyc02g037530.2.1 cdna:known chromosome:SL2.40:2:21756443:21766699:1 gene:Solyc02g037530.2 transcript:Solyc02g037530.2.1 | 0 | 2291 | 0 | 628 | 314 | 3 | 5' TGAAGCTGCCAGCATGATCT 3' ||||||||||| |||||| 3' TTTATGTTCGACGGTCGGACTAGAAACTCCCA 5' |
1489 | Solanum lycopersicum | AGAATCTTGATGATGCTGCAT | alignment | plot | GSM553688-9229 | Solyc02g064960.2.1 cdna:known chromosome:SL2.40:2:30651561:30655131:1 gene:Solyc02g064960.2 transcript:Solyc02g064960.2.1 | 2 | 1744 | 0.02 | 15 | 7.5 | 2.5 | 5' AGAATCTTGATGATGCTGCAT 3' |||||o||||||||||||| 3' ACTCCCTTAGGACTACTACGACGTCGTCAACG 5' |
1490 | Solanum lycopersicum | TCGGACCAGGCTTCATTCCCC | alignment | plot | GSM553688-9229 | Solyc11g069470.1.1 cdna:novel chromosome:SL2.40:11:51150759:51156271:1 gene:Solyc11g069470.1 transcript:Solyc11g069470.1.1 | 0 | 571 | 0 | 21 | 21 | 2.5 | 5' TCGGACCAGGCTTCATTCCCC 3' o||||||||||||||| ||| 3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAGC 5' |
1491 | Solanum lycopersicum | AGAATCTTGATGATGCTGCAT | alignment | plot | GSM553688-9229 | Solyc09g007260.2.1 cdna:novel chromosome:SL2.40:9:856629:859952:1 gene:Solyc09g007260.2 transcript:Solyc09g007260.2.1 | 0 | 1523 | 0 | 25 | 25 | 2.5 | 5' AGAATCTTGATGATGCTGCAT 3' |||||o||||||||||||| 3' AATCGCTTAGGACTACTACGACGTCATCTCTT 5' |
1492 | Solanum lycopersicum | TCAATGCTACATACTCATCCC | alignment | plot | GSM553688-9229 | Solyc03g120270.2.1 cdna:novel chromosome:SL2.40:3:62768790:62778357:1 gene:Solyc03g120270.2 transcript:Solyc03g120270.2.1 | 2 | 2922 | 0.04 | 27 | 27 | 3.5 | 5' TCAATGCTACATACTCATCCC 3' ||||||||||| | |||o || 3' TTTGAGTTACGATGTTTTAGTGTGGTGAACGT 5' |
1493 | Solanum lycopersicum | TCGGACCAGGCTTCATTCCCC | alignment | plot | GSM553688-9229 | Solyc12g044410.1.1 cdna:novel chromosome:SL2.40:12:44793673:44801092:1 gene:Solyc12g044410.1 transcript:Solyc12g044410.1.1 | 0 | 559 | 0 | 316 | 105.333 | 2.5 | 5' TCGGACCAGGCTTCATTCCCC 3' o|||||||||||||||||| 3' CTTAGGCCTGGTCCGAAGTAAGGTCCGTAAAC 5' |
1494 | Solanum lycopersicum | CTTCCTTCTTCTTCTTGCAAG | alignment | plot | GSM553688-9229 | Solyc11g013120.1.1 cdna:novel chromosome:SL2.40:11:5977807:5980510:-1 gene:Solyc11g013120.1 transcript:Solyc11g013120.1.1 | 0 | 1251 | 0.02 | 10 | 10 | 4 | 5' CTTCCTTCTTCTTCTTGCAAG 3' ||| ||||o|||o ||||| | 3' CTATGAACGAAGGAGAGTAACGTACCTTAAGT 5' |
1495 | Solanum lycopersicum | TTGAGCCGTGCCAATATCACG | alignment | plot | GSM553688-9229 | Solyc08g078800.1.1 cdna:novel chromosome:SL2.40:8:59683241:59684665:-1 gene:Solyc08g078800.1 transcript:Solyc08g078800.1.1 | 2 | 404 | 0.02 | 28 | 28 | 2.5 | 5' TTGAGCCGTGCCAATATCACG 3' ||||||||o|||||||||| 3' AACTAACTCGGCGCGGTTATAGTAAACGCGCA 5' |
1496 | Solanum lycopersicum | TTGACAGAAGATAGAGAGCAT | alignment | plot | GSM553688-9229 | Solyc12g038520.1.1 cdna:novel chromosome:SL2.40:12:35933880:35935930:-1 gene:Solyc12g038520.1 transcript:Solyc12g038520.1.1 | 0 | 982 | 0 | 19 | 9.5 | 2.5 | 5' TTGACAGAAGATAGAGAGCAT 3' |||||||||| ||||||||o 3' ACTCTACTGTCTTCTCTCTCTCGTGTCGGTCT 5' |
1497 | Solanum lycopersicum | TGCCTGGCTCCCTGTATGCCA | alignment | plot | GSM553688-9229 | Solyc06g075150.2.1 cdna:known chromosome:SL2.40:6:43020594:43023443:1 gene:Solyc06g075150.2 transcript:Solyc06g075150.2.1 | 0 | 1502 | 0 | 38 | 38 | 1 | 5' TGCCTGGCTCCCTGTATGCCA 3' |||||||||||||||||||| 3' TTGTACGGACCGAGGGACATACGGACGTCATT 5' |
1498 | Solanum lycopersicum | TTGAGCCGTGCCAATATCACG | alignment | plot | GSM553688-9229 | Solyc01g090950.2.1 cdna:novel chromosome:SL2.40:1:76416878:76419772:-1 gene:Solyc01g090950.2 transcript:Solyc01g090950.2.1 | 0 | 1578 | 0 | 50 | 50 | 2.5 | 5' TTGAGCCGTGCCAATATCACG 3' ||||||||o||||||||| | 3' CACTAACTCGGCGCGGTTATAGGGAACGCGCT 5' |
1499 | Solanum lycopersicum | TCGGACCAGGCTTCATTCCCC | alignment | plot | GSM553688-9229 | Solyc08g066500.2.1 cdna:novel chromosome:SL2.40:8:52415522:52421037:-1 gene:Solyc08g066500.2 transcript:Solyc08g066500.2.1 | 0 | 577 | 0 | 316 | 105.333 | 2.5 | 5' TCGGACCAGGCTTCATTCCCC 3' o||||||||||||||| ||| 3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAAA 5' |
1500 | Solanum lycopersicum | AGAATCTTGATGATGCTGCAT | alignment | plot | GSM553688-9229 | Solyc04g049800.2.1 cdna:novel chromosome:SL2.40:4:42714973:42717503:1 gene:Solyc04g049800.2 transcript:Solyc04g049800.2.1 | 0 | 1117 | 0 | 96 | 96 | 1.5 | 5' AGAATCTTGATGATGCTGCAT 3' ||||||o||||||||||||| 3' CATCTCTTAGGACTACTACGACGTCTTCTTCT 5' |
1501 | Solanum lycopersicum | TGATTGAGCCGTGCCAATATC | alignment | plot | GSM553688-9229 | Solyc01g090950.2.1 cdna:novel chromosome:SL2.40:1:76416878:76419772:-1 gene:Solyc01g090950.2 transcript:Solyc01g090950.2.1 | 2 | 1581 | 0 | 16 | 16 | 0.5 | 5' TGATTGAGCCGTGCCAATATC 3' |||||||||||o||||||||| 3' GACCACTAACTCGGCGCGGTTATAGGGAACGC 5' |
1502 | Solanum lycopersicum | TCGGACCAGGCTTCATTCCCC | alignment | plot | GSM553688-9229 | Solyc02g024070.2.1 cdna:novel chromosome:SL2.40:2:15627267:15633567:1 gene:Solyc02g024070.2 transcript:Solyc02g024070.2.1 | 2 | 819 | 0 | 26 | 26 | 2.5 | 5' TCGGACCAGGCTTCATTCCCC 3' o||||||||||||||| ||| 3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTCGA 5' |
1503 | Solanum lycopersicum | TCGGACCAGGCTTCATTCCCC | alignment | plot | GSM553688-9229 | Solyc02g069830.2.1 cdna:novel chromosome:SL2.40:2:34234662:34242222:-1 gene:Solyc02g069830.2 transcript:Solyc02g069830.2.1 | 2 | 629 | 0 | 20 | 20 | 2.5 | 5' TCGGACCAGGCTTCATTCCCC 3' o||||||||||||||| ||| 3' CTAAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5' |
1504 | Solanum lycopersicum | TTTCCAATTCCACCCATTCCTA | alignment | plot | GSM553688-9229 | Solyc06g005410.2.1 cdna:novel chromosome:SL2.40:6:421845:422623:-1 gene:Solyc06g005410.2 transcript:Solyc06g005410.2.1 | 0 | 389 | 0.02 | 260 | 260 | 4 | 5' TTTCCAATTCCACCCATTCCTA 3' ||||| |||||||| || || | 3' ACAAAAAGGATAAGGTGGTTACGG-TATATAT 5' |
1505 | Solanum lycopersicum | TGACAGAAGAGAGTGAGCACA | alignment | plot | GSM553688-9229 | Solyc12g038520.1.1 cdna:novel chromosome:SL2.40:12:35933880:35935930:-1 gene:Solyc12g038520.1 transcript:Solyc12g038520.1.1 | 2 | 981 | 0 | 5 | 2.5 | 1 | 5' TGACAGAAGAGAGTGAGCACA 3' ||||||||||||| ||||||| 3' CTCTACTGTCTTCTCTCTCTCGTGTCGGTCTC 5' |
1506 | Solanum lycopersicum | TTTGGATTGAAGGGAGCTC | alignment | plot | GSM553688-9229 | Solyc12g014120.1.1 cdna:known chromosome:SL2.40:12:4931940:4933799:-1 gene:Solyc12g014120.1 transcript:Solyc12g014120.1.1 | 2 | 472 | 0.03 | 13 | 13 | 2 | 5' TTTGGATTGAAGGGAGCTC 3' ||||| |||||||| |||| 3' ATTAAAACCAAACTTCCCCCGAGGTAGACTAT 5' |
1507 | Solanum lycopersicum | TGCCTGGCTCCCTGTATGCCA | alignment | plot | GSM553688-9229 | Solyc11g013470.1.1 cdna:novel chromosome:SL2.40:11:6496469:6499311:-1 gene:Solyc11g013470.1 transcript:Solyc11g013470.1.1 | 0 | 554 | 0 | 79 | 79 | 1.5 | 5' TGCCTGGCTCCCTGTATGCCA 3' ||||||||||||||o||||| 3' TAGTACGGACCGAGGGACGTACGGGCGTCCTT 5' |
1508 | Solanum lycopersicum | TGACAGAAGAGAGTGAGCACA | alignment | plot | GSM553688-9229 | Solyc07g062980.2.1 cdna:novel chromosome:SL2.40:7:62823040:62824209:-1 gene:Solyc07g062980.2 transcript:Solyc07g062980.2.1 | 0 | 448 | 0 | 48 | 48 | 2.5 | 5' TGACAGAAGAGAGTGAGCACA 3' ||||||||||||||o|||| 3' CCCGACTGTCTTCTCTCATTCGTAAAGTAGGT 5' |
1509 | Solanum lycopersicum | TTGACAGAAGATAGAGAGCAT | alignment | plot | GSM553688-9229 | Solyc05g015510.2.1 cdna:novel chromosome:SL2.40:5:10767268:10772201:-1 gene:Solyc05g015510.2 transcript:Solyc05g015510.2.1 | 0 | 2962 | 0 | 391 | 391 | 1.5 | 5' TTGACAGAAGATAGAGAGCAT 3' ||||||||||| ||||||||o 3' AATCAACTGTCTTCTCTCTCTCGTGCTCCTTT 5' |
1510 | Solanum lycopersicum | TAGCCAAGGATGACTTGCCTG | alignment | plot | GSM553688-9229 | Solyc01g087240.2.1 cdna:novel chromosome:SL2.40:1:73938193:73944527:1 gene:Solyc01g087240.2 transcript:Solyc01g087240.2.1 | 0 | 1171 | 0 | 41 | 41 | 2.5 | 5' TAGCCAAGGATGACTTGCCTG 3' |||||||o|||| ||||||| 3' TTGGTTCGGTTCTTACTTAACGGACTCGTATC 5' |
1511 | Solanum lycopersicum | TGACAGAAGATAGAGAGCAC | alignment | plot | GSM553688-9229 | Solyc07g006030.2.1 cdna:novel chromosome:SL2.40:7:866918:880889:-1 gene:Solyc07g006030.2 transcript:Solyc07g006030.2.1 | 2 | 3033 | 0 | 10 | 10 | 2.5 | 5' TGACAGAAGATAGAGAGCAC 3' || ||o||||||||| |||| 3' TTCTAC-GTTTTCTATCTCCCGTGCTAACTGT 5' |
1512 | Solanum lycopersicum | TTGACAGAAGATAGAGAGCAT | alignment | plot | GSM553688-9229 | Solyc02g070280.2.1 cdna:novel chromosome:SL2.40:2:34632835:34637531:-1 gene:Solyc02g070280.2 transcript:Solyc02g070280.2.1 | 0 | 391 | 0 | 12 | 12 | 3 | 5' TTGACAGAAGATAGAGAGCAT 3' |o||||||||o|||||||| 3' GTCACATTGTCTTCTGTCTCTCGTTCCGCCTC 5' |
1513 | Solanum lycopersicum | TTGGATTGAAGGGAGCTCT | alignment | plot | GSM553688-9229 | Solyc06g074300.2.1 cdna:novel chromosome:SL2.40:6:42312797:42316469:-1 gene:Solyc06g074300.2 transcript:Solyc06g074300.2.1 | 2 | 503 | 0.03 | 12 | 12 | 2.5 | 5' TTGGATTGAAGGGAGCTCT 3' ||||||| |||o|| |||| 3' TTGGAACCTAAGTTCTCT-GAGAACCACCCTT 5' |
1514 | Solanum lycopersicum | TTGACAGAAGATAGAGAGCAT | alignment | plot | GSM553688-9229 | Solyc10g078700.1.1 cdna:novel chromosome:SL2.40:10:59754038:59758728:-1 gene:Solyc10g078700.1 transcript:Solyc10g078700.1.1 | 0 | 775 | 0 | 198 | 198 | 1.5 | 5' TTGACAGAAGATAGAGAGCAT 3' ||||||||||| ||||||||o 3' GCTAAACTGTCTTCTCTCTCTCGTGGTGAACT 5' |
1515 | Solanum lycopersicum | TCGATAAACCTCTGCATCCAG | alignment | plot | GSM553688-9229 | Solyc10g005130.2.1 cdna:novel chromosome:SL2.40:10:111879:125251:1 gene:Solyc10g005130.2 transcript:Solyc10g005130.2.1 | 0 | 3259 | 0 | 88 | 88 | 1 | 5' TCGATAA-ACCTCTGCATCCAG 3' ||||||| |||||||||||||| 3' TGTAGCTATTATGGAGACGTAGGTCGAGCAAC 5' |
1516 | Solanum lycopersicum | TTGACAGAAGATAGAGAGCAT | alignment | plot | GSM553688-9229 | Solyc05g015840.2.1 cdna:novel chromosome:SL2.40:5:12394400:12397051:1 gene:Solyc05g015840.2 transcript:Solyc05g015840.2.1 | 2 | 760 | 0.02 | 10 | 10 | 2.5 | 5' TTGACAGAAGATAGAGAGCAT 3' |||||||||| ||||||||o 3' CGACTACTGTCTTCTCTCTCTCGTGCTAGTCT 5' |
1517 | Solanum lycopersicum | AGAATCTTGATGATGCTGCAT | alignment | plot | GSM553688-9229 | Solyc03g044300.2.1 cdna:known chromosome:SL2.40:3:12742062:12746690:1 gene:Solyc03g044300.2 transcript:Solyc03g044300.2.1 | 0 | 1384 | 0 | 11 | 11 | 2.5 | 5' AGAATCTTGATGATGCTGCAT 3' |||||o||||||||||||| 3' ACCCCCTTAGGACTACTACGACGTCGTCAACG 5' |
1518 | Solanum lycopersicum | TGAAGCTGCCAGCATGATCT | alignment | plot | GSM553688-9229 | Solyc03g031970.2.1 cdna:known chromosome:SL2.40:3:8739906:8747501:1 gene:Solyc03g031970.2 transcript:Solyc03g031970.2.1 | 0 | 2294 | 0 | 628 | 314 | 3 | 5' TGAAGCTGCCAGCATGATCT 3' ||||||||||| |||||| 3' TTTATGTTCGACGGTCGGACTAGAAACTCCCA 5' |
1519 | Solanum lycopersicum | TAGCCAAGGATGACTTGCCTG | alignment | plot | GSM553688-9229 | Solyc01g006930.2.1 cdna:novel chromosome:SL2.40:1:1506539:1511917:1 gene:Solyc01g006930.2 transcript:Solyc01g006930.2.1 | 0 | 1328 | 0 | 57 | 57 | 3.5 | 5' TAGCCAAGGATGACTTGCCTG 3' |||||||||||| o||||oo 3' ACGATTCGGTTCCTACTTGACGGGTACTATCG 5' |
1520 | Solanum lycopersicum | CTAGATTCACGCACAAGCTCG | alignment | plot | GSM553688-9229 | Solyc02g069260.2.1 cdna:novel chromosome:SL2.40:2:33782147:33788905:1 gene:Solyc02g069260.2 transcript:Solyc02g069260.2.1 | 0 | 3260 | 0 | 368 | 368 | 2.5 | 5' CTAGATTCACGCACAAGCTCG 3' |||||||||||||||o||| 3' GGGTAATCTAAGTGCGTGTTTGAGGAAACGTT 5' |
1521 | Solanum lycopersicum | TTGACAGAAGATAGAGAGCAT | alignment | plot | GSM553688-9229 | Solyc03g114850.2.1 cdna:novel chromosome:SL2.40:3:58796755:58802237:1 gene:Solyc03g114850.2 transcript:Solyc03g114850.2.1 | 2 | 1482 | 0 | 19 | 9.5 | 2 | 5' TTGACAGAAGATAGAGAGCAT 3' |||||||||| ||||||||| 3' ACTCTACTGTCTTCTCTCTCTCGTAACGACCT 5' |
1522 | Solanum lycopersicum | TAGCCAAGGATGACTTGCCTG | alignment | plot | GSM553688-9229 | Solyc08g062210.2.1 cdna:novel chromosome:SL2.40:8:47964141:47973284:1 gene:Solyc08g062210.2 transcript:Solyc08g062210.2.1 | 0 | 1111 | 0 | 38 | 38 | 2.5 | 5' TAGCCAAGGATGACTTGCCTG 3' ||||||||||||| o|||| | 3' TTGTATCGGTTCCTACTTGACGG-CTAATAGG 5' |
1523 | Solanum lycopersicum | TAGCCAAGGATGACTTGCCTA | alignment | plot | GSM553688-9229 | Solyc08g062210.2.1 cdna:novel chromosome:SL2.40:8:47964141:47973284:1 gene:Solyc08g062210.2 transcript:Solyc08g062210.2.1 | 0 | 1111 | 0 | 38 | 38 | 2.5 | 5' TAGCCAAGGATGACTTGCCTA 3' ||||||||||||| o|||| | 3' TTGTATCGGTTCCTACTTGACGGCTAATAGGT 5' |
1524 | Solanum lycopersicum | TCATCTTCATCATCATCTTTA | alignment | plot | GSM553688-9229 | Solyc01g090830.2.1 cdna:novel chromosome:SL2.40:1:76291388:76293073:1 gene:Solyc01g090830.2 transcript:Solyc01g090830.2.1 | 0 | 275 | 0 | 14 | 7 | 2.5 | 5' TCATCTTCATCATCATCTTTA 3' ||||| ||||||||||| |o| 3' AAGTAGTAGTAGTAGTAGTAGTAGTAGGTATA 5' |
1525 | Solanum lycopersicum | TGCCTGGCTCCCTGTATGCCA | alignment | plot | GSM553688-9229 | Solyc11g069500.1.1 cdna:known chromosome:SL2.40:11:51188434:51191569:-1 gene:Solyc11g069500.1 transcript:Solyc11g069500.1.1 | 0 | 1313 | 0 | 32 | 32 | 1 | 5' TGCCTGGCTCCCTGTATGCCA 3' |||||||||||||||||||| 3' TCGTACGGACCGAGGGACATACGGACGTCACT 5' |
1526 | Solanum lycopersicum | TCATCTTCATCATCATCTTTA | alignment | plot | GSM553688-9229 | Solyc07g044900.1.1 cdna:novel chromosome:SL2.40:7:55287417:55287569:1 gene:Solyc07g044900.1 transcript:Solyc07g044900.1.1 | 0 | 101 | 0.02 | 7 | 0.875 | 3.5 | 5' TCATCTTCATCATCATCTTTA 3' || || ||||||||| |||o| 3' CAGCAGCAGTAGTAGTAGTCGAAGTTTGAGAG 5' |
1527 | Solanum lycopersicum | AGAATCTTGATGATGCTGCAT | alignment | plot | GSM553688-9229 | Solyc06g075510.2.1 cdna:known chromosome:SL2.40:6:43255163:43258759:-1 gene:Solyc06g075510.2 transcript:Solyc06g075510.2.1 | 2 | 1522 | 0.01 | 10 | 10 | 2.5 | 5' AGAATCTTGATGATGCTGCAT 3' ||||||o|||||||||||| 3' TACTTCTTAGGACTACTACGACGGCACGTCTT 5' |
1528 | Solanum lycopersicum | AGAATCTTGATGATGCTGCAT | alignment | plot | GSM553688-9229 | Solyc11g072600.1.1 cdna:known chromosome:SL2.40:11:52857365:52860247:-1 gene:Solyc11g072600.1 transcript:Solyc11g072600.1.1 | 0 | 1288 | 0 | 240 | 240 | 1.5 | 5' AGAATCTTGATGATGCTGCAT 3' ||||||o||||||||||||| 3' CAACTCTTAGGACTACTACGACGTCGTCTCTT 5' |
1529 | Solanum lycopersicum | TTGACAGAAGATAGAGAGCAT | alignment | plot | GSM553688-9229 | Solyc04g045560.2.1 cdna:novel chromosome:SL2.40:4:33188973:33194461:1 gene:Solyc04g045560.2 transcript:Solyc04g045560.2.1 | 0 | 799 | 0 | 20 | 20 | 1.5 | 5' TTGACAGAAGATAGAGAGCAT 3' ||||||||||| ||||||||o 3' AGTAAACTGTCTTCTCTCTCTCGTGCTCCATT 5' |
1530 | Solanum lycopersicum | CTGAAGTGTTTGGGGGAACTCC | alignment | plot | GSM553688-9229 | Solyc06g048510.2.1 cdna:novel chromosome:SL2.40:6:27661455:27665948:1 gene:Solyc06g048510.2 transcript:Solyc06g048510.2.1 | 2 | 1080 | 0 | 10 | 10 | 3.5 | 5' CTGAAGTGTTT-GGGGGAACTCC 3' ||o||||o||| || o||||||| 3' TCTCGATTTCATAAAACCGTCTTGAGGAAAGT 5' |
1531 | Solanum lycopersicum | TTTGGATTGAAGGGAGCTC | alignment | plot | GSM553688-9229 | Solyc01g009070.2.1 cdna:known chromosome:SL2.40:1:3075589:3080069:-1 gene:Solyc01g009070.2 transcript:Solyc01g009070.2.1 | 2 | 967 | 0 | 26 | 26 | 1 | 5' TTTGGATTGAAGGGAGCTC 3' |||||| |||||||||||| 3' ACCAAAACCTCACTTCCCTCGAGGTCGAAGTA 5' |
1532 | Solanum lycopersicum | TCATCTTCATCATCATCTTTA | alignment | plot | GSM553688-9229 | Solyc12g008940.1.1 cdna:novel chromosome:SL2.40:12:2247275:2252022:-1 gene:Solyc12g008940.1 transcript:Solyc12g008940.1.1 | 2 | 983 | 0.01 | 10 | 10 | 2 | 5' TCATCTTCATCATCATCTTTA 3' |||||||||||||||||o|o 3' GAGTAGTAGAAGTAGTAGTAGGAGCAGGAGCA 5' |
1533 | Solanum lycopersicum | AGAATCTTGATGATGCTGCAT | alignment | plot | GSM553688-9229 | Solyc02g093150.2.1 cdna:known chromosome:SL2.40:2:48655673:48658630:1 gene:Solyc02g093150.2 transcript:Solyc02g093150.2.1 | 2 | 1572 | 0 | 15 | 7.5 | 2.5 | 5' AGAATCTTGATGATGCTGCAT 3' |||||o||||||||||||| 3' ACTCCCTTAGGACTACTACGACGTCGTCGATG 5' |
1534 | Solanum lycopersicum | TTTGGATTGAAGGGAGCTC | alignment | plot | GSM553688-9229 | Solyc06g008320.2.1 cdna:novel chromosome:SL2.40:6:2193612:2201004:-1 gene:Solyc06g008320.2 transcript:Solyc06g008320.2.1 | 2 | 1529 | 0 | 6 | 6 | 2 | 5' TTTGGATTGAAGGGAGCTC 3' ||o||||||||o|o|o||| 3' ATGAAAGCCTAACTTTCTTTGAGCTTCGAGGC 5' |
1535 | Solanum lycopersicum | TTTGGATTGAAGGGAGCTC | alignment | plot | GSM553689-9230 | Solyc06g073640.2.1 cdna:known chromosome:SL2.40:6:41820787:41825280:-1 gene:Solyc06g073640.2 transcript:Solyc06g073640.2.1 | 0 | 1054 | 0 | 122 | 122 | 1 | 5' TTTGGATTGAAGGGAGCTC 3' |||||| |||||||||||| 3' CATGAAACCTCACTTCCCTCGAGCTCGAAGAA 5' |
1536 | Solanum lycopersicum | TGATTGAGCCGTGCCAATATC | alignment | plot | GSM553689-9230 | Solyc08g078800.1.1 cdna:novel chromosome:SL2.40:8:59683241:59684665:-1 gene:Solyc08g078800.1 transcript:Solyc08g078800.1.1 | 0 | 407 | 0 | 92 | 92 | 0.5 | 5' TGATTGAGCCGTGCCAATATC 3' |||||||||||o||||||||| 3' GACAACTAACTCGGCGCGGTTATAGTAAACGC 5' |
1537 | Solanum lycopersicum | AGAATCTTGATGATGCTGCAT | alignment | plot | GSM553689-9230 | Solyc02g064960.2.1 cdna:known chromosome:SL2.40:2:30651561:30655131:1 gene:Solyc02g064960.2 transcript:Solyc02g064960.2.1 | 0 | 1744 | 0 | 248 | 124 | 2.5 | 5' AGAATCTTGATGATGCTGCAT 3' |||||o||||||||||||| 3' ACTCCCTTAGGACTACTACGACGTCGTCAACG 5' |
1538 | Solanum lycopersicum | AGAATCTTGATGATGCTGCAT | alignment | plot | GSM553689-9230 | Solyc10g084340.1.1 cdna:novel chromosome:SL2.40:10:63251955:63255101:-1 gene:Solyc10g084340.1 transcript:Solyc10g084340.1.1 | 0 | 1252 | 0 | 45 | 45 | 2.5 | 5' AGAATCTTGATGATGCTGCAT 3' |||||o||||||||||||| 3' AAAGGCTTAGGACTACTACGACGTCATCTCTT 5' |
1539 | Solanum lycopersicum | TGAAGCTGCCAGCATGATCT | alignment | plot | GSM553689-9230 | Solyc02g037530.2.1 cdna:known chromosome:SL2.40:2:21756443:21766699:1 gene:Solyc02g037530.2 transcript:Solyc02g037530.2.1 | 0 | 2291 | 0 | 161 | 80.5 | 3 | 5' TGAAGCTGCCAGCATGATCT 3' ||||||||||| |||||| 3' TTTATGTTCGACGGTCGGACTAGAAACTCCCA 5' |
1540 | Solanum lycopersicum | TCGGACCAGGCTTCATTCCCC | alignment | plot | GSM553689-9230 | Solyc11g069470.1.1 cdna:novel chromosome:SL2.40:11:51150759:51156271:1 gene:Solyc11g069470.1 transcript:Solyc11g069470.1.1 | 0 | 571 | 0 | 28 | 28 | 2.5 | 5' TCGGACCAGGCTTCATTCCCC 3' o||||||||||||||| ||| 3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAGC 5' |
1541 | Solanum lycopersicum | TCGCTTGGTGCAGGTCGGGAC | alignment | plot | GSM553689-9230 | Solyc06g072300.2.1 cdna:known chromosome:SL2.40:6:40960724:40969540:-1 gene:Solyc06g072300.2 transcript:Solyc06g072300.2.1 | 2 | 388 | 0.01 | 23 | 23 | 3 | 5' TCGCTTGGTGCAGGTCGGGAC 3' | ||||||||||| |||||| 3' AGTCAACGAACCACGTCGAGCCCTTGACCACC 5' |
1542 | Solanum lycopersicum | AGAATCTTGATGATGCTGCAT | alignment | plot | GSM553689-9230 | Solyc09g007260.2.1 cdna:novel chromosome:SL2.40:9:856629:859952:1 gene:Solyc09g007260.2 transcript:Solyc09g007260.2.1 | 0 | 1523 | 0 | 13 | 13 | 2.5 | 5' AGAATCTTGATGATGCTGCAT 3' |||||o||||||||||||| 3' AATCGCTTAGGACTACTACGACGTCATCTCTT 5' |
1543 | Solanum lycopersicum | TGATTGAGCCGTGCCAATATC | alignment | plot | GSM553689-9230 | Solyc02g085600.1.1 cdna:novel chromosome:SL2.40:2:43007859:43009469:1 gene:Solyc02g085600.1 transcript:Solyc02g085600.1.1 | 2 | 596 | 0 | 4 | 4 | 2 | 5' TGATTGAGCCGTGCCAATATC 3' |||||||| ||||||| |||| 3' GGCAACTAACTCCGCACGGTCATAGTGTACAC 5' |
1544 | Solanum lycopersicum | TCGGACCAGGCTTCATTCCCC | alignment | plot | GSM553689-9230 | Solyc12g044410.1.1 cdna:novel chromosome:SL2.40:12:44793673:44801092:1 gene:Solyc12g044410.1 transcript:Solyc12g044410.1.1 | 0 | 559 | 0 | 419 | 139.667 | 2.5 | 5' TCGGACCAGGCTTCATTCCCC 3' o|||||||||||||||||| 3' CTTAGGCCTGGTCCGAAGTAAGGTCCGTAAAC 5' |
1545 | Solanum lycopersicum | TTGACAGAAGATAGAGAGCAT | alignment | plot | GSM553689-9230 | Solyc12g038520.1.1 cdna:novel chromosome:SL2.40:12:35933880:35935930:-1 gene:Solyc12g038520.1 transcript:Solyc12g038520.1.1 | 0 | 982 | 0 | 15 | 7.5 | 2.5 | 5' TTGACAGAAGATAGAGAGCAT 3' |||||||||| ||||||||o 3' ACTCTACTGTCTTCTCTCTCTCGTGTCGGTCT 5' |
1546 | Solanum lycopersicum | TGATTGAGCCGTGCCAATATC | alignment | plot | GSM553689-9230 | Solyc01g090950.2.1 cdna:novel chromosome:SL2.40:1:76416878:76419772:-1 gene:Solyc01g090950.2 transcript:Solyc01g090950.2.1 | 0 | 1581 | 0 | 73 | 73 | 0.5 | 5' TGATTGAGCCGTGCCAATATC 3' |||||||||||o||||||||| 3' GACCACTAACTCGGCGCGGTTATAGGGAACGC 5' |
1547 | Solanum lycopersicum | TGCCTGGCTCCCTGTATGCCA | alignment | plot | GSM553689-9230 | Solyc06g075150.2.1 cdna:known chromosome:SL2.40:6:43020594:43023443:1 gene:Solyc06g075150.2 transcript:Solyc06g075150.2.1 | 0 | 1502 | 0 | 20 | 20 | 1 | 5' TGCCTGGCTCCCTGTATGCCA 3' |||||||||||||||||||| 3' TTGTACGGACCGAGGGACATACGGACGTCATT 5' |
1548 | Solanum lycopersicum | TCGGACCAGGCTTCATTCCCC | alignment | plot | GSM553689-9230 | Solyc02g024070.2.1 cdna:novel chromosome:SL2.40:2:15627267:15633567:1 gene:Solyc02g024070.2 transcript:Solyc02g024070.2.1 | 2 | 819 | 0 | 18 | 18 | 2.5 | 5' TCGGACCAGGCTTCATTCCCC 3' o||||||||||||||| ||| 3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTCGA 5' |
1549 | Solanum lycopersicum | TTTGGATTGAAGGGAGCTC | alignment | plot | GSM553689-9230 | Solyc12g014120.1.1 cdna:known chromosome:SL2.40:12:4931940:4933799:-1 gene:Solyc12g014120.1 transcript:Solyc12g014120.1.1 | 2 | 472 | 0.01 | 7 | 7 | 2 | 5' TTTGGATTGAAGGGAGCTC 3' ||||| |||||||| |||| 3' ATTAAAACCAAACTTCCCCCGAGGTAGACTAT 5' |
1550 | Solanum lycopersicum | TCGGACCAGGCTTCATTCCCC | alignment | plot | GSM553689-9230 | Solyc02g069830.2.1 cdna:novel chromosome:SL2.40:2:34234662:34242222:-1 gene:Solyc02g069830.2 transcript:Solyc02g069830.2.1 | 0 | 629 | 0 | 37 | 37 | 2.5 | 5' TCGGACCAGGCTTCATTCCCC 3' o||||||||||||||| ||| 3' CTAAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5' |
1551 | Solanum lycopersicum | TGACAGAAGAGAGTGAGCACA | alignment | plot | GSM553689-9230 | Solyc12g038520.1.1 cdna:novel chromosome:SL2.40:12:35933880:35935930:-1 gene:Solyc12g038520.1 transcript:Solyc12g038520.1.1 | 2 | 981 | 0 | 2 | 1 | 1 | 5' TGACAGAAGAGAGTGAGCACA 3' ||||||||||||| ||||||| 3' CTCTACTGTCTTCTCTCTCTCGTGTCGGTCTC 5' |
1552 | Solanum lycopersicum | TTGACAGAAGATAGAGAGCAT | alignment | plot | GSM553689-9230 | Solyc02g077920.2.1 cdna:novel chromosome:SL2.40:2:37320931:37323107:-1 gene:Solyc02g077920.2 transcript:Solyc02g077920.2.1 | 2 | 840 | 0 | 6 | 6 | 0 | 5' TTGACAGAAGATAGAGAGCAT 3' ||||||||||||||||||||| 3' CCTTAACTGTCTTCTATCTCTCGTACGAATTG 5' |
1553 | Solanum lycopersicum | TTGAGCCGTGCCAATATCACG | alignment | plot | GSM553689-9230 | Solyc01g090950.2.1 cdna:novel chromosome:SL2.40:1:76416878:76419772:-1 gene:Solyc01g090950.2 transcript:Solyc01g090950.2.1 | 2 | 1578 | 0 | 60 | 60 | 2.5 | 5' TTGAGCCGTGCCAATATCACG 3' ||||||||o||||||||| | 3' CACTAACTCGGCGCGGTTATAGGGAACGCGCT 5' |
1554 | Solanum lycopersicum | TCATCTTCATCATCATCTTTA | alignment | plot | GSM553689-9230 | Solyc03g053030.1.1 cdna:novel chromosome:SL2.40:3:19757259:19759785:-1 gene:Solyc03g053030.1 transcript:Solyc03g053030.1.1 | 0 | 1085 | 0 | 9 | 1.8 | 2.5 | 5' TCATCTTCATCATCATCTTTA 3' ||||| ||||||||||| |o| 3' TAGAAGTAGTAGTAGTAGTAGCAGTAGCAGTA 5' |
1555 | Solanum lycopersicum | TGAAGCTGCCAGCATGATCTA | alignment | plot | GSM553689-9230 | Solyc08g075770.2.1 cdna:novel chromosome:SL2.40:8:57049670:57059466:-1 gene:Solyc08g075770.2 transcript:Solyc08g075770.2.1 | 2 | 1203 | 0.01 | 5 | 5 | 3 | 5' TGAAGCTGCCAGCATGATCTA 3' |||| ||||||o||o| |||| 3' TTGAACTT-GACGGTTGTGCGAGATCGTGAAG 5' |
1556 | Solanum lycopersicum | TCGGACCAGGCTTCATTCCCC | alignment | plot | GSM553689-9230 | Solyc08g066500.2.1 cdna:novel chromosome:SL2.40:8:52415522:52421037:-1 gene:Solyc08g066500.2 transcript:Solyc08g066500.2.1 | 0 | 577 | 0 | 419 | 139.667 | 2.5 | 5' TCGGACCAGGCTTCATTCCCC 3' o||||||||||||||| ||| 3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAAA 5' |
1557 | Solanum lycopersicum | AGAATCTTGATGATGCTGCAT | alignment | plot | GSM553689-9230 | Solyc04g049800.2.1 cdna:novel chromosome:SL2.40:4:42714973:42717503:1 gene:Solyc04g049800.2 transcript:Solyc04g049800.2.1 | 0 | 1117 | 0 | 12 | 12 | 1.5 | 5' AGAATCTTGATGATGCTGCAT 3' ||||||o||||||||||||| 3' CATCTCTTAGGACTACTACGACGTCTTCTTCT 5' |
1558 | Solanum lycopersicum | TTTCCAATTCCACCCATTCCTA | alignment | plot | GSM553689-9230 | Solyc06g005410.2.1 cdna:novel chromosome:SL2.40:6:421845:422623:-1 gene:Solyc06g005410.2 transcript:Solyc06g005410.2.1 | 0 | 389 | 0.02 | 108 | 108 | 4 | 5' TTTCCAATTCCACCCATTCCTA 3' ||||| |||||||| || || | 3' ACAAAAAGGATAAGGTGGTTACGG-TATATAT 5' |
1559 | Solanum lycopersicum | TTGGATTGAAGGGAGCTCT | alignment | plot | GSM553689-9230 | Solyc05g012840.1.1 cdna:novel chromosome:SL2.40:5:5987496:5988167:-1 gene:Solyc05g012840.1 transcript:Solyc05g012840.1.1 | 0 | 626 | 0.03 | 8 | 4 | 3.5 | 5' TTGGATTGAAGGGAGCTCT 3' o||||o||||||| | ||o 3' CTTTGACCTGACTTCCC-CAAGGGATACTCTT 5' |
1560 | Solanum lycopersicum | TTGGATTGAAGGGAGCTCT | alignment | plot | GSM553689-9230 | Solyc02g077250.2.1 cdna:known chromosome:SL2.40:2:36822112:36823838:-1 gene:Solyc02g077250.2 transcript:Solyc02g077250.2.1 | 0 | 908 | 0.02 | 8 | 4 | 3.5 | 5' TTGGATTGAAGGGAGCTCT 3' o||||o||||||| | ||o 3' CTTTGACCTGACTTCCC-CAAGGGACACTCTT 5' |
1561 | Solanum lycopersicum | TCATCTTCATCATCATCTTTA | alignment | plot | GSM553689-9230 | Solyc01g020410.1.1 cdna:novel chromosome:SL2.40:1:30103231:30103620:1 gene:Solyc01g020410.1 transcript:Solyc01g020410.1.1 | 2 | 239 | 0.02 | 4 | 0.03125 | 1.5 | 5' TCATCTTCATCATCATCTTTA 3' ||||| |||||||||||||o| 3' TAGTAGTAGTAGTAGTAGTAGAAGTAGTAGTA 5' |
1562 | Solanum lycopersicum | TGCCTGGCTCCCTGTATGCCA | alignment | plot | GSM553689-9230 | Solyc11g013470.1.1 cdna:novel chromosome:SL2.40:11:6496469:6499311:-1 gene:Solyc11g013470.1 transcript:Solyc11g013470.1.1 | 0 | 554 | 0 | 165 | 165 | 1.5 | 5' TGCCTGGCTCCCTGTATGCCA 3' ||||||||||||||o||||| 3' TAGTACGGACCGAGGGACGTACGGGCGTCCTT 5' |
1563 | Solanum lycopersicum | TTGACAGAAGATAGAGAGCAT | alignment | plot | GSM553689-9230 | Solyc05g012040.2.1 cdna:novel chromosome:SL2.40:5:5268986:5273711:1 gene:Solyc05g012040.2 transcript:Solyc05g012040.2.1 | 2 | 1430 | 0 | 7 | 7 | 2 | 5' TTGACAGAAGATAGAGAGCAT 3' o|||||||||| ||||||||o 3' ACCCGACTGTCTTCTCTCTCTCGTGTTCTCCT 5' |
1564 | Solanum lycopersicum | TGACAGAAGAGAGTGAGCACA | alignment | plot | GSM553689-9230 | Solyc07g062980.2.1 cdna:novel chromosome:SL2.40:7:62823040:62824209:-1 gene:Solyc07g062980.2 transcript:Solyc07g062980.2.1 | 0 | 448 | 0 | 51 | 51 | 2.5 | 5' TGACAGAAGAGAGTGAGCACA 3' ||||||||||||||o|||| 3' CCCGACTGTCTTCTCTCATTCGTAAAGTAGGT 5' |
1565 | Solanum lycopersicum | TCATCTTCATCATCATCTTTA | alignment | plot | GSM553689-9230 | Solyc07g065800.2.1 cdna:novel chromosome:SL2.40:7:64642057:64643753:-1 gene:Solyc07g065800.2 transcript:Solyc07g065800.2.1 | 0 | 253 | 0.02 | 12 | 12 | 2.5 | 5' TCATCTTCATCATCATCTTTA 3' ||||||||||||||||| |o 3' ACATAGTAGAAGTAGTAGTAGCAGCAGTAGTA 5' |
1566 | Solanum lycopersicum | TTGACAGAAGATAGAGAGCAT | alignment | plot | GSM553689-9230 | Solyc05g015510.2.1 cdna:novel chromosome:SL2.40:5:10767268:10772201:-1 gene:Solyc05g015510.2 transcript:Solyc05g015510.2.1 | 0 | 2962 | 0 | 92 | 92 | 1.5 | 5' TTGACAGAAGATAGAGAGCAT 3' ||||||||||| ||||||||o 3' AATCAACTGTCTTCTCTCTCTCGTGCTCCTTT 5' |
1567 | Solanum lycopersicum | TAGCCAAGGATGACTTGCCTG | alignment | plot | GSM553689-9230 | Solyc01g087240.2.1 cdna:novel chromosome:SL2.40:1:73938193:73944527:1 gene:Solyc01g087240.2 transcript:Solyc01g087240.2.1 | 0 | 1171 | 0 | 141 | 141 | 2.5 | 5' TAGCCAAGGATGACTTGCCTG 3' |||||||o|||| ||||||| 3' TTGGTTCGGTTCTTACTTAACGGACTCGTATC 5' |
1568 | Solanum lycopersicum | TTGACAGAAGATAGAGAGCAT | alignment | plot | GSM553689-9230 | Solyc10g078700.1.1 cdna:novel chromosome:SL2.40:10:59754038:59758728:-1 gene:Solyc10g078700.1 transcript:Solyc10g078700.1.1 | 0 | 775 | 0 | 67 | 67 | 1.5 | 5' TTGACAGAAGATAGAGAGCAT 3' ||||||||||| ||||||||o 3' GCTAAACTGTCTTCTCTCTCTCGTGGTGAACT 5' |
1569 | Solanum lycopersicum | TCGATAAACCTCTGCATCCAG | alignment | plot | GSM553689-9230 | Solyc10g005130.2.1 cdna:novel chromosome:SL2.40:10:111879:125251:1 gene:Solyc10g005130.2 transcript:Solyc10g005130.2.1 | 0 | 3259 | 0 | 129 | 129 | 1 | 5' TCGATAA-ACCTCTGCATCCAG 3' ||||||| |||||||||||||| 3' TGTAGCTATTATGGAGACGTAGGTCGAGCAAC 5' |
1570 | Solanum lycopersicum | AGAATCTTGATGATGCTGCAT | alignment | plot | GSM553689-9230 | Solyc03g044300.2.1 cdna:known chromosome:SL2.40:3:12742062:12746690:1 gene:Solyc03g044300.2 transcript:Solyc03g044300.2.1 | 0 | 1384 | 0 | 178 | 178 | 2.5 | 5' AGAATCTTGATGATGCTGCAT 3' |||||o||||||||||||| 3' ACCCCCTTAGGACTACTACGACGTCGTCAACG 5' |
1571 | Solanum lycopersicum | TGAAGCTGCCAGCATGATCT | alignment | plot | GSM553689-9230 | Solyc03g031970.2.1 cdna:known chromosome:SL2.40:3:8739906:8747501:1 gene:Solyc03g031970.2 transcript:Solyc03g031970.2.1 | 0 | 2294 | 0 | 161 | 80.5 | 3 | 5' TGAAGCTGCCAGCATGATCT 3' ||||||||||| |||||| 3' TTTATGTTCGACGGTCGGACTAGAAACTCCCA 5' |
1572 | Solanum lycopersicum | TAGCCAAGGATGACTTGCCTG | alignment | plot | GSM553689-9230 | Solyc01g006930.2.1 cdna:novel chromosome:SL2.40:1:1506539:1511917:1 gene:Solyc01g006930.2 transcript:Solyc01g006930.2.1 | 0 | 1328 | 0.01 | 39 | 39 | 3.5 | 5' TAGCCAAGGATGACTTGCCTG 3' |||||||||||| o||||oo 3' ACGATTCGGTTCCTACTTGACGGGTACTATCG 5' |
1573 | Solanum lycopersicum | CTAGATTCACGCACAAGCTCG | alignment | plot | GSM553689-9230 | Solyc02g069260.2.1 cdna:novel chromosome:SL2.40:2:33782147:33788905:1 gene:Solyc02g069260.2 transcript:Solyc02g069260.2.1 | 0 | 3260 | 0 | 126 | 126 | 2.5 | 5' CTAGATTCACGCACAAGCTCG 3' |||||||||||||||o||| 3' GGGTAATCTAAGTGCGTGTTTGAGGAAACGTT 5' |
1574 | Solanum lycopersicum | TAGCCAAGGATGACTTGCCTG | alignment | plot | GSM553689-9230 | Solyc08g062210.2.1 cdna:novel chromosome:SL2.40:8:47964141:47973284:1 gene:Solyc08g062210.2 transcript:Solyc08g062210.2.1 | 0 | 1111 | 0 | 80 | 80 | 2.5 | 5' TAGCCAAGGATGACTTGCCTG 3' ||||||||||||| o|||| | 3' TTGTATCGGTTCCTACTTGACGG-CTAATAGG 5' |
1575 | Solanum lycopersicum | TAGCCAAGGATGACTTGCCTA | alignment | plot | GSM553689-9230 | Solyc08g062210.2.1 cdna:novel chromosome:SL2.40:8:47964141:47973284:1 gene:Solyc08g062210.2 transcript:Solyc08g062210.2.1 | 0 | 1111 | 0 | 80 | 80 | 2.5 | 5' TAGCCAAGGATGACTTGCCTA 3' ||||||||||||| o|||| | 3' TTGTATCGGTTCCTACTTGACGGCTAATAGGT 5' |
1576 | Solanum lycopersicum | TGCCTGGCTCCCTGTATGCCA | alignment | plot | GSM553689-9230 | Solyc09g007810.2.1 cdna:novel chromosome:SL2.40:9:1332643:1335760:-1 gene:Solyc09g007810.2 transcript:Solyc09g007810.2.1 | 2 | 1608 | 0 | 15 | 15 | 0.5 | 5' TGCCTGGCTCCCTGTATGCCA 3' ||||||||||||||o|||||| 3' TCGTACGGACCGAGGGACGTACGGTCGTCCCC 5' |
1577 | Solanum lycopersicum | GTTCTATCTTCTCTTCCAGA | alignment | plot | GSM553689-9230 | Solyc04g015640.1.1 cdna:novel chromosome:SL2.40:4:5929168:5929871:-1 gene:Solyc04g015640.1 transcript:Solyc04g015640.1.1 | 1 | 280 | 0.04 | 4 | 4 | 3.5 | 5' GTTCTATCTTCTCTTCCAGA 3' |||| ||||| ||||| |o| 3' TGTTCAAGTTAGAAAAGAAGTTTTAGGGGATA 5' |
1578 | Solanum lycopersicum | TTGACAGAAGATAGAGAGCAT | alignment | plot | GSM553689-9230 | Solyc03g114850.2.1 cdna:novel chromosome:SL2.40:3:58796755:58802237:1 gene:Solyc03g114850.2 transcript:Solyc03g114850.2.1 | 2 | 1482 | 0 | 15 | 7.5 | 2 | 5' TTGACAGAAGATAGAGAGCAT 3' |||||||||| ||||||||| 3' ACTCTACTGTCTTCTCTCTCTCGTAACGACCT 5' |
1579 | Solanum lycopersicum | TGCCTGGCTCCCTGTATGCCA | alignment | plot | GSM553689-9230 | Solyc11g069500.1.1 cdna:known chromosome:SL2.40:11:51188434:51191569:-1 gene:Solyc11g069500.1 transcript:Solyc11g069500.1.1 | 0 | 1313 | 0 | 43 | 43 | 1 | 5' TGCCTGGCTCCCTGTATGCCA 3' |||||||||||||||||||| 3' TCGTACGGACCGAGGGACATACGGACGTCACT 5' |
1580 | Solanum lycopersicum | AGAATCTTGATGATGCTGCAT | alignment | plot | GSM553689-9230 | Solyc11g072600.1.1 cdna:known chromosome:SL2.40:11:52857365:52860247:-1 gene:Solyc11g072600.1 transcript:Solyc11g072600.1.1 | 0 | 1288 | 0 | 183 | 183 | 1.5 | 5' AGAATCTTGATGATGCTGCAT 3' ||||||o||||||||||||| 3' CAACTCTTAGGACTACTACGACGTCGTCTCTT 5' |
1581 | Solanum lycopersicum | TTGACAGAAGATAGAGAGCAT | alignment | plot | GSM553689-9230 | Solyc04g045560.2.1 cdna:novel chromosome:SL2.40:4:33188973:33194461:1 gene:Solyc04g045560.2 transcript:Solyc04g045560.2.1 | 0 | 799 | 0 | 12 | 12 | 1.5 | 5' TTGACAGAAGATAGAGAGCAT 3' ||||||||||| ||||||||o 3' AGTAAACTGTCTTCTCTCTCTCGTGCTCCATT 5' |
1582 | Solanum lycopersicum | AGAATCTTGATGATGCTGCAT | alignment | plot | GSM553689-9230 | Solyc02g093150.2.1 cdna:known chromosome:SL2.40:2:48655673:48658630:1 gene:Solyc02g093150.2 transcript:Solyc02g093150.2.1 | 0 | 1572 | 0 | 248 | 124 | 2.5 | 5' AGAATCTTGATGATGCTGCAT 3' |||||o||||||||||||| 3' ACTCCCTTAGGACTACTACGACGTCGTCGATG 5' |
1583 | Solanum lycopersicum | TTGGATTGAAGGGAGCTCT | alignment | plot | GSM553689-9230 | Solyc08g048390.1.1 cdna:known chromosome:SL2.40:8:39810608:39811771:1 gene:Solyc08g048390.1 transcript:Solyc08g048390.1.1 | 0 | 1025 | 0.04 | 22 | 22 | 3.5 | 5' TTGGATTGAAGGGAGCTCT 3' |||||o||||||| |o|o 3' TCTTAACCTGACTTCCCAGGGGGATAACTTTG 5' |
1584 | Solanum lycopersicum | AGAATCTTGATGATGCTGCAT | alignment | plot | GSM553689-9230 | Solyc06g075510.2.1 cdna:known chromosome:SL2.40:6:43255163:43258759:-1 gene:Solyc06g075510.2 transcript:Solyc06g075510.2.1 | 2 | 1522 | 0 | 10 | 10 | 2.5 | 5' AGAATCTTGATGATGCTGCAT 3' ||||||o|||||||||||| 3' TACTTCTTAGGACTACTACGACGGCACGTCTT 5' |
1585 | Solanum lycopersicum | CTGAAGTGTTTGGGGGAACTCC | alignment | plot | GSM553689-9230 | Solyc09g082860.2.1 cdna:novel chromosome:SL2.40:9:63941988:63946072:1 gene:Solyc09g082860.2 transcript:Solyc09g082860.2.1 | 2 | 488 | 0.01 | 11 | 11 | 3.5 | 5' CTGAAGTGTTTGGGGGAACTCC 3' ||||| ||||||o||||||| 3' ACTTTACTTCTCAAACCTCCTTGAGCCTAAGA 5' |
1586 | Solanum lycopersicum | TTTGGATTGAAGGGAGCTC | alignment | plot | GSM553689-9230 | Solyc01g009070.2.1 cdna:known chromosome:SL2.40:1:3075589:3080069:-1 gene:Solyc01g009070.2 transcript:Solyc01g009070.2.1 | 2 | 967 | 0 | 4 | 4 | 1 | 5' TTTGGATTGAAGGGAGCTC 3' |||||| |||||||||||| 3' ACCAAAACCTCACTTCCCTCGAGGTCGAAGTA 5' |
1587 | Solanum lycopersicum | TTTGGATTGAAGGGAGCTC | alignment | plot | GSM553689-9230 | Solyc10g019260.1.1 cdna:novel chromosome:SL2.40:10:12672810:12674303:1 gene:Solyc10g019260.1 transcript:Solyc10g019260.1.1 | 2 | 150 | 0 | 9 | 9 | 1.5 | 5' TTTGGATTGAAGGGAGCTC 3' |||||||o||| ||||||| 3' CCGGAAACCTAGCTTACCTCGAGGTTAGAGAA 5' |
1588 | Solanum lycopersicum | TGATTGAGCCGTGCCAATATC | alignment | plot | GSM553690-9231 | Solyc08g078800.1.1 cdna:novel chromosome:SL2.40:8:59683241:59684665:-1 gene:Solyc08g078800.1 transcript:Solyc08g078800.1.1 | 0 | 407 | 0 | 20 | 20 | 0.5 | 5' TGATTGAGCCGTGCCAATATC 3' |||||||||||o||||||||| 3' GACAACTAACTCGGCGCGGTTATAGTAAACGC 5' |
1589 | Solanum lycopersicum | TCGCTTGGTGCAGGTCGGGAC | alignment | plot | GSM553690-9231 | Solyc06g072300.2.1 cdna:known chromosome:SL2.40:6:40960724:40969540:-1 gene:Solyc06g072300.2 transcript:Solyc06g072300.2.1 | 2 | 388 | 0.01 | 33 | 33 | 3 | 5' TCGCTTGGTGCAGGTCGGGAC 3' | ||||||||||| |||||| 3' AGTCAACGAACCACGTCGAGCCCTTGACCACC 5' |
1590 | Solanum lycopersicum | AGAATCTTGATGATGCTGCAT | alignment | plot | GSM553690-9231 | Solyc02g064960.2.1 cdna:known chromosome:SL2.40:2:30651561:30655131:1 gene:Solyc02g064960.2 transcript:Solyc02g064960.2.1 | 0 | 1744 | 0 | 44 | 22 | 2.5 | 5' AGAATCTTGATGATGCTGCAT 3' |||||o||||||||||||| 3' ACTCCCTTAGGACTACTACGACGTCGTCAACG 5' |
1591 | Solanum lycopersicum | AGAATCTTGATGATGCTGCAT | alignment | plot | GSM553690-9231 | Solyc10g084340.1.1 cdna:novel chromosome:SL2.40:10:63251955:63255101:-1 gene:Solyc10g084340.1 transcript:Solyc10g084340.1.1 | 0 | 1252 | 0 | 28 | 28 | 2.5 | 5' AGAATCTTGATGATGCTGCAT 3' |||||o||||||||||||| 3' AAAGGCTTAGGACTACTACGACGTCATCTCTT 5' |
1592 | Solanum lycopersicum | ACATCATCATCATCATCATAA | alignment | plot | GSM553690-9231 | Solyc07g061900.2.1 cdna:novel chromosome:SL2.40:7:62014111:62015965:1 gene:Solyc07g061900.2 transcript:Solyc07g061900.2.1 | 2 | 886 | 0.05 | 4 | 4 | 2 | 5' ACATCATCATCATCATCATAA 3' |||||||||||||||||| | 3' GGTCAGTAGTAGTAGTAGTAGTAGTAAAGGCA 5' |
1593 | Solanum lycopersicum | TGAAGCTGCCAGCATGATCT | alignment | plot | GSM553690-9231 | Solyc02g037530.2.1 cdna:known chromosome:SL2.40:2:21756443:21766699:1 gene:Solyc02g037530.2 transcript:Solyc02g037530.2.1 | 0 | 2291 | 0 | 136 | 68 | 3 | 5' TGAAGCTGCCAGCATGATCT 3' ||||||||||| |||||| 3' TTTATGTTCGACGGTCGGACTAGAAACTCCCA 5' |
1594 | Solanum lycopersicum | TTGAGTGCAGCGTTGATGAC | alignment | plot | GSM553690-9231 | Solyc05g006100.2.1 cdna:novel chromosome:SL2.40:5:824706:827085:1 gene:Solyc05g006100.2 transcript:Solyc05g006100.2.1 | 2 | 362 | 0.01 | 5 | 5 | 2.5 | 5' TTGAGTGCAGCGTTGATGAC 3' o| |||||||||||| |||| 3' TTGGGAGTCACGTCGCAAC-ACTGTCTCTACT 5' |
1595 | Solanum lycopersicum | TTGAGCCGTGCCAATATCACG | alignment | plot | GSM553690-9231 | Solyc08g078800.1.1 cdna:novel chromosome:SL2.40:8:59683241:59684665:-1 gene:Solyc08g078800.1 transcript:Solyc08g078800.1.1 | 2 | 404 | 0 | 11 | 11 | 2.5 | 5' TTGAGCCGTGCCAATATCACG 3' ||||||||o|||||||||| 3' AACTAACTCGGCGCGGTTATAGTAAACGCGCA 5' |
1596 | Solanum lycopersicum | TCGGACCAGGCTTCATTCCCC | alignment | plot | GSM553690-9231 | Solyc11g069470.1.1 cdna:novel chromosome:SL2.40:11:51150759:51156271:1 gene:Solyc11g069470.1 transcript:Solyc11g069470.1.1 | 0 | 571 | 0 | 32 | 32 | 2.5 | 5' TCGGACCAGGCTTCATTCCCC 3' o||||||||||||||| ||| 3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAGC 5' |
1597 | Solanum lycopersicum | TTAATATGTTGTGTTTGTTGT | alignment | plot | GSM553690-9231 | Solyc01g090690.2.1 cdna:novel chromosome:SL2.40:1:76088526:76099238:1 gene:Solyc01g090690.2 transcript:Solyc01g090690.2.1 | 2 | 2308 | 0.05 | 8 | 8 | 3 | 5' TTAATATGTTGTGTTTGTTGT 3' ||||o| ||||o|||||| || 3' ACGCAATTGTTCAACGCAAACA-CATAGAGGA 5' |
1598 | Solanum lycopersicum | TCGGACCAGGCTTCATTCCCC | alignment | plot | GSM553690-9231 | Solyc12g044410.1.1 cdna:novel chromosome:SL2.40:12:44793673:44801092:1 gene:Solyc12g044410.1 transcript:Solyc12g044410.1.1 | 0 | 559 | 0 | 515 | 171.667 | 2.5 | 5' TCGGACCAGGCTTCATTCCCC 3' o|||||||||||||||||| 3' CTTAGGCCTGGTCCGAAGTAAGGTCCGTAAAC 5' |
1599 | Solanum lycopersicum | TTTGGATTGAAGGGAGCTC | alignment | plot | GSM553690-9231 | Solyc06g073640.2.1 cdna:known chromosome:SL2.40:6:41820787:41825280:-1 gene:Solyc06g073640.2 transcript:Solyc06g073640.2.1 | 2 | 1054 | 0 | 4 | 4 | 1 | 5' TTTGGATTGAAGGGAGCTC 3' |||||| |||||||||||| 3' CATGAAACCTCACTTCCCTCGAGCTCGAAGAA 5' |
1600 | Solanum lycopersicum | TCGGACCAGGCTTCATTCCCC | alignment | plot | GSM553690-9231 | Solyc02g024070.2.1 cdna:novel chromosome:SL2.40:2:15627267:15633567:1 gene:Solyc02g024070.2 transcript:Solyc02g024070.2.1 | 0 | 819 | 0 | 11 | 11 | 2.5 | 5' TCGGACCAGGCTTCATTCCCC 3' o||||||||||||||| ||| 3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTCGA 5' |
1601 | Solanum lycopersicum | TTGAGCCGTGCCAATATCACG | alignment | plot | GSM553690-9231 | Solyc01g090950.2.1 cdna:novel chromosome:SL2.40:1:76416878:76419772:-1 gene:Solyc01g090950.2 transcript:Solyc01g090950.2.1 | 0 | 1578 | 0 | 163 | 163 | 2.5 | 5' TTGAGCCGTGCCAATATCACG 3' ||||||||o||||||||| | 3' CACTAACTCGGCGCGGTTATAGGGAACGCGCT 5' |
1602 | Solanum lycopersicum | TGCCTGGCTCCCTGTATGCCA | alignment | plot | GSM553690-9231 | Solyc06g075150.2.1 cdna:known chromosome:SL2.40:6:43020594:43023443:1 gene:Solyc06g075150.2 transcript:Solyc06g075150.2.1 | 0 | 1502 | 0 | 40 | 40 | 1 | 5' TGCCTGGCTCCCTGTATGCCA 3' |||||||||||||||||||| 3' TTGTACGGACCGAGGGACATACGGACGTCATT 5' |
1603 | Solanum lycopersicum | TCGGACCAGGCTTCATTCCCC | alignment | plot | GSM553690-9231 | Solyc02g069830.2.1 cdna:novel chromosome:SL2.40:2:34234662:34242222:-1 gene:Solyc02g069830.2 transcript:Solyc02g069830.2.1 | 0 | 629 | 0 | 32 | 32 | 2.5 | 5' TCGGACCAGGCTTCATTCCCC 3' o||||||||||||||| ||| 3' CTAAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5' |
1604 | Solanum lycopersicum | CTGAAGTGTTTGGGGGAACTCC | alignment | plot | GSM553690-9231 | Solyc04g054730.2.1 cdna:novel chromosome:SL2.40:4:52246216:52251232:-1 gene:Solyc04g054730.2 transcript:Solyc04g054730.2.1 | 1 | 311 | 0 | 11 | 11 | 3.5 | 5' CTGAAGTGTTTGGGGGAACTCC 3' |||||||||||||o|||| | 3' CACAAACTTCACAAACCCTCTTGTGTCTTTCA 5' |
1605 | Solanum lycopersicum | TCATCTTCATCATCATCTTTA | alignment | plot | GSM553690-9231 | Solyc01g057520.2.1 cdna:novel chromosome:SL2.40:1:54163130:54174043:1 gene:Solyc01g057520.2 transcript:Solyc01g057520.2.1 | 2 | 3052 | 0.01 | 4 | 4 | 1.5 | 5' TCATCTTCATCATCATCTTTA 3' ||||| |||||||||||||o| 3' CAGGAGTAGTAGTAGTAGTAGAAGTCAAAGGA 5' |
1606 | Solanum lycopersicum | TGATTGAGCCGTGCCAATATC | alignment | plot | GSM553690-9231 | Solyc01g090950.2.1 cdna:novel chromosome:SL2.40:1:76416878:76419772:-1 gene:Solyc01g090950.2 transcript:Solyc01g090950.2.1 | 2 | 1581 | 0 | 5 | 5 | 0.5 | 5' TGATTGAGCCGTGCCAATATC 3' |||||||||||o||||||||| 3' GACCACTAACTCGGCGCGGTTATAGGGAACGC 5' |
1607 | Solanum lycopersicum | TCGGACCAGGCTTCATTCCCC | alignment | plot | GSM553690-9231 | Solyc08g066500.2.1 cdna:novel chromosome:SL2.40:8:52415522:52421037:-1 gene:Solyc08g066500.2 transcript:Solyc08g066500.2.1 | 0 | 577 | 0 | 515 | 171.667 | 2.5 | 5' TCGGACCAGGCTTCATTCCCC 3' o||||||||||||||| ||| 3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAAA 5' |
1608 | Solanum lycopersicum | AGAATCTTGATGATGCTGCAT | alignment | plot | GSM553690-9231 | Solyc04g049800.2.1 cdna:novel chromosome:SL2.40:4:42714973:42717503:1 gene:Solyc04g049800.2 transcript:Solyc04g049800.2.1 | 0 | 1117 | 0 | 15 | 15 | 1.5 | 5' AGAATCTTGATGATGCTGCAT 3' ||||||o||||||||||||| 3' CATCTCTTAGGACTACTACGACGTCTTCTTCT 5' |
1609 | Solanum lycopersicum | TTTGGATTGAAGGGAGCTC | alignment | plot | GSM553690-9231 | Solyc12g014120.1.1 cdna:known chromosome:SL2.40:12:4931940:4933799:-1 gene:Solyc12g014120.1 transcript:Solyc12g014120.1.1 | 2 | 472 | 0.03 | 4 | 4 | 2 | 5' TTTGGATTGAAGGGAGCTC 3' ||||| |||||||| |||| 3' ATTAAAACCAAACTTCCCCCGAGGTAGACTAT 5' |
1610 | Solanum lycopersicum | TTGACAGAAGATAGAGAGCAT | alignment | plot | GSM553690-9231 | Solyc02g077920.2.1 cdna:novel chromosome:SL2.40:2:37320931:37323107:-1 gene:Solyc02g077920.2 transcript:Solyc02g077920.2.1 | 2 | 840 | 0 | 30 | 30 | 0 | 5' TTGACAGAAGATAGAGAGCAT 3' ||||||||||||||||||||| 3' CCTTAACTGTCTTCTATCTCTCGTACGAATTG 5' |
1611 | Solanum lycopersicum | TTTCCAATTCCACCCATTCCTA | alignment | plot | GSM553690-9231 | Solyc06g005410.2.1 cdna:novel chromosome:SL2.40:6:421845:422623:-1 gene:Solyc06g005410.2 transcript:Solyc06g005410.2.1 | 0 | 389 | 0 | 11 | 11 | 4 | 5' TTTCCAATTCCACCCATTCCTA 3' ||||| |||||||| || || | 3' ACAAAAAGGATAAGGTGGTTACGG-TATATAT 5' |
1612 | Solanum lycopersicum | TTGGATTGAAGGGAGCTCT | alignment | plot | GSM553690-9231 | Solyc05g012840.1.1 cdna:novel chromosome:SL2.40:5:5987496:5988167:-1 gene:Solyc05g012840.1 transcript:Solyc05g012840.1.1 | 1 | 626 | 0.02 | 4 | 2 | 3.5 | 5' TTGGATTGAAGGGAGCTCT 3' o||||o||||||| | ||o 3' CTTTGACCTGACTTCCC-CAAGGGATACTCTT 5' |
1613 | Solanum lycopersicum | TTTTTGAAGAGTTCGAGCAAC | alignment | plot | GSM553690-9231 | Solyc02g089930.2.1 cdna:novel chromosome:SL2.40:2:46180875:46185136:-1 gene:Solyc02g089930.2 transcript:Solyc02g089930.2.1 | 2 | 958 | 0.03 | 5 | 5 | 3 | 5' TTTTTGAAGAGTTCGAGCAAC 3' || |||||||||o|o|||| | 3' AGGTAATAACTTCTCAGGTTCGT-GAGATCTG 5' |
1614 | Solanum lycopersicum | TGAAGCTGCCAGCATGATCTA | alignment | plot | GSM553690-9231 | Solyc06g036780.2.1 cdna:novel chromosome:SL2.40:6:24511239:24528169:1 gene:Solyc06g036780.2 transcript:Solyc06g036780.2.1 | 2 | 908 | 0.05 | 7 | 7 | 3 | 5' TGAAGCTGCCAGCATGATCTA 3' |||||||o|||||| o||| | 3' ATCAACTTCGATGGTCGTCTTAG-TGTGGTTG 5' |
1615 | Solanum lycopersicum | TTGGATTGAAGGGAGCTCT | alignment | plot | GSM553690-9231 | Solyc02g077250.2.1 cdna:known chromosome:SL2.40:2:36822112:36823838:-1 gene:Solyc02g077250.2 transcript:Solyc02g077250.2.1 | 1 | 908 | 0.02 | 4 | 2 | 3.5 | 5' TTGGATTGAAGGGAGCTCT 3' o||||o||||||| | ||o 3' CTTTGACCTGACTTCCC-CAAGGGACACTCTT 5' |
1616 | Solanum lycopersicum | ACATCATCATCATCATCATAA | alignment | plot | GSM553690-9231 | Solyc03g053030.1.1 cdna:novel chromosome:SL2.40:3:19757259:19759785:-1 gene:Solyc03g053030.1 transcript:Solyc03g053030.1.1 | 2 | 733 | 0.05 | 7 | 0.466667 | 2 | 5' ACATCATCATCATCATCATAA 3' |||||||||||||||||| | 3' CAGCAGTAGTAGTAGTAGTAGTAGTAGTAGTA 5' |
1617 | Solanum lycopersicum | TGCCTGGCTCCCTGTATGCCA | alignment | plot | GSM553690-9231 | Solyc11g013470.1.1 cdna:novel chromosome:SL2.40:11:6496469:6499311:-1 gene:Solyc11g013470.1 transcript:Solyc11g013470.1.1 | 0 | 554 | 0 | 473 | 473 | 1.5 | 5' TGCCTGGCTCCCTGTATGCCA 3' ||||||||||||||o||||| 3' TAGTACGGACCGAGGGACGTACGGGCGTCCTT 5' |
1618 | Solanum lycopersicum | TTTGGATTGAAGGGAGCTC | alignment | plot | GSM553690-9231 | Solyc01g009070.2.1 cdna:known chromosome:SL2.40:1:3075589:3080069:-1 gene:Solyc01g009070.2 transcript:Solyc01g009070.2.1 | 0 | 967 | 0 | 10 | 10 | 1 | 5' TTTGGATTGAAGGGAGCTC 3' |||||| |||||||||||| 3' ACCAAAACCTCACTTCCCTCGAGGTCGAAGTA 5' |
1619 | Solanum lycopersicum | TTGACAGAAGATAGAGAGCAT | alignment | plot | GSM553690-9231 | Solyc05g015510.2.1 cdna:novel chromosome:SL2.40:5:10767268:10772201:-1 gene:Solyc05g015510.2 transcript:Solyc05g015510.2.1 | 0 | 2962 | 0 | 50 | 50 | 1.5 | 5' TTGACAGAAGATAGAGAGCAT 3' ||||||||||| ||||||||o 3' AATCAACTGTCTTCTCTCTCTCGTGCTCCTTT 5' |
1620 | Solanum lycopersicum | TAGCCAAGGATGACTTGCCTG | alignment | plot | GSM553690-9231 | Solyc01g087240.2.1 cdna:novel chromosome:SL2.40:1:73938193:73944527:1 gene:Solyc01g087240.2 transcript:Solyc01g087240.2.1 | 0 | 1171 | 0 | 245 | 245 | 2.5 | 5' TAGCCAAGGATGACTTGCCTG 3' |||||||o|||| ||||||| 3' TTGGTTCGGTTCTTACTTAACGGACTCGTATC 5' |
1621 | Solanum lycopersicum | TTGACAGAAGATAGAGAGCAT | alignment | plot | GSM553690-9231 | Solyc10g078700.1.1 cdna:novel chromosome:SL2.40:10:59754038:59758728:-1 gene:Solyc10g078700.1 transcript:Solyc10g078700.1.1 | 0 | 775 | 0 | 65 | 65 | 1.5 | 5' TTGACAGAAGATAGAGAGCAT 3' ||||||||||| ||||||||o 3' GCTAAACTGTCTTCTCTCTCTCGTGGTGAACT 5' |
1622 | Solanum lycopersicum | AGAATCTTGATGATGCTGCAT | alignment | plot | GSM553690-9231 | Solyc03g044300.2.1 cdna:known chromosome:SL2.40:3:12742062:12746690:1 gene:Solyc03g044300.2 transcript:Solyc03g044300.2.1 | 0 | 1384 | 0 | 57 | 57 | 2.5 | 5' AGAATCTTGATGATGCTGCAT 3' |||||o||||||||||||| 3' ACCCCCTTAGGACTACTACGACGTCGTCAACG 5' |
1623 | Solanum lycopersicum | TGAAGCTGCCAGCATGATCT | alignment | plot | GSM553690-9231 | Solyc03g031970.2.1 cdna:known chromosome:SL2.40:3:8739906:8747501:1 gene:Solyc03g031970.2 transcript:Solyc03g031970.2.1 | 0 | 2294 | 0 | 136 | 68 | 3 | 5' TGAAGCTGCCAGCATGATCT 3' ||||||||||| |||||| 3' TTTATGTTCGACGGTCGGACTAGAAACTCCCA 5' |
1624 | Solanum lycopersicum | TAGCCAAGGATGACTTGCCTG | alignment | plot | GSM553690-9231 | Solyc01g006930.2.1 cdna:novel chromosome:SL2.40:1:1506539:1511917:1 gene:Solyc01g006930.2 transcript:Solyc01g006930.2.1 | 0 | 1328 | 0 | 27 | 27 | 3.5 | 5' TAGCCAAGGATGACTTGCCTG 3' |||||||||||| o||||oo 3' ACGATTCGGTTCCTACTTGACGGGTACTATCG 5' |
1625 | Solanum lycopersicum | CTAGATTCACGCACAAGCTCG | alignment | plot | GSM553690-9231 | Solyc02g069260.2.1 cdna:novel chromosome:SL2.40:2:33782147:33788905:1 gene:Solyc02g069260.2 transcript:Solyc02g069260.2.1 | 0 | 3260 | 0 | 425 | 425 | 2.5 | 5' CTAGATTCACGCACAAGCTCG 3' |||||||||||||||o||| 3' GGGTAATCTAAGTGCGTGTTTGAGGAAACGTT 5' |
1626 | Solanum lycopersicum | TAGCCAAGGATGACTTGCCTG | alignment | plot | GSM553690-9231 | Solyc08g062210.2.1 cdna:novel chromosome:SL2.40:8:47964141:47973284:1 gene:Solyc08g062210.2 transcript:Solyc08g062210.2.1 | 0 | 1111 | 0 | 40 | 40 | 2.5 | 5' TAGCCAAGGATGACTTGCCTG 3' ||||||||||||| o|||| | 3' TTGTATCGGTTCCTACTTGACGG-CTAATAGG 5' |
1627 | Solanum lycopersicum | TAGCCAAGGATGACTTGCCTA | alignment | plot | GSM553690-9231 | Solyc08g062210.2.1 cdna:novel chromosome:SL2.40:8:47964141:47973284:1 gene:Solyc08g062210.2 transcript:Solyc08g062210.2.1 | 0 | 1111 | 0 | 40 | 40 | 2.5 | 5' TAGCCAAGGATGACTTGCCTA 3' ||||||||||||| o|||| | 3' TTGTATCGGTTCCTACTTGACGGCTAATAGGT 5' |
1628 | Solanum lycopersicum | TGACAGAAGAGAGTGAGCACA | alignment | plot | GSM553690-9231 | Solyc05g012040.2.1 cdna:novel chromosome:SL2.40:5:5268986:5273711:1 gene:Solyc05g012040.2 transcript:Solyc05g012040.2.1 | 2 | 1429 | 0 | 2 | 2 | 1 | 5' TGACAGAAGAGAGTGAGCACA 3' ||||||||||||| ||||||| 3' CCCGACTGTCTTCTCTCTCTCGTGTTCTCCTC 5' |
1629 | Solanum lycopersicum | TTGACAGAAGATAGAGAGCAT | alignment | plot | GSM553690-9231 | Solyc05g012040.2.1 cdna:novel chromosome:SL2.40:5:5268986:5273711:1 gene:Solyc05g012040.2 transcript:Solyc05g012040.2.1 | 2 | 1430 | 0.01 | 2 | 2 | 2 | 5' TTGACAGAAGATAGAGAGCAT 3' o|||||||||| ||||||||o 3' ACCCGACTGTCTTCTCTCTCTCGTGTTCTCCT 5' |
1630 | Solanum lycopersicum | CTGAAGTGTTTGGGGGAACTCC | alignment | plot | GSM553690-9231 | Solyc09g082860.2.1 cdna:novel chromosome:SL2.40:9:63941988:63946072:1 gene:Solyc09g082860.2 transcript:Solyc09g082860.2.1 | 1 | 488 | 0 | 7 | 7 | 3.5 | 5' CTGAAGTGTTTGGGGGAACTCC 3' ||||| ||||||o||||||| 3' ACTTTACTTCTCAAACCTCCTTGAGCCTAAGA 5' |
1631 | Solanum lycopersicum | TCGATAAACCTCTGCATCCAG | alignment | plot | GSM553690-9231 | Solyc10g005130.2.1 cdna:novel chromosome:SL2.40:10:111879:125251:1 gene:Solyc10g005130.2 transcript:Solyc10g005130.2.1 | 2 | 3259 | 0 | 7 | 7 | 1 | 5' TCGATAA-ACCTCTGCATCCAG 3' ||||||| |||||||||||||| 3' TGTAGCTATTATGGAGACGTAGGTCGAGCAAC 5' |
1632 | Solanum lycopersicum | TGCCTGGCTCCCTGTATGCCA | alignment | plot | GSM553690-9231 | Solyc11g069500.1.1 cdna:known chromosome:SL2.40:11:51188434:51191569:-1 gene:Solyc11g069500.1 transcript:Solyc11g069500.1.1 | 0 | 1313 | 0 | 28 | 28 | 1 | 5' TGCCTGGCTCCCTGTATGCCA 3' |||||||||||||||||||| 3' TCGTACGGACCGAGGGACATACGGACGTCACT 5' |
1633 | Solanum lycopersicum | AGAATCTTGATGATGCTGCAT | alignment | plot | GSM553690-9231 | Solyc11g072600.1.1 cdna:known chromosome:SL2.40:11:52857365:52860247:-1 gene:Solyc11g072600.1 transcript:Solyc11g072600.1.1 | 0 | 1288 | 0 | 28 | 28 | 1.5 | 5' AGAATCTTGATGATGCTGCAT 3' ||||||o||||||||||||| 3' CAACTCTTAGGACTACTACGACGTCGTCTCTT 5' |
1634 | Solanum lycopersicum | AGAATCTTGATGATGCTGCAT | alignment | plot | GSM553690-9231 | Solyc02g093150.2.1 cdna:known chromosome:SL2.40:2:48655673:48658630:1 gene:Solyc02g093150.2 transcript:Solyc02g093150.2.1 | 0 | 1572 | 0 | 44 | 22 | 2.5 | 5' AGAATCTTGATGATGCTGCAT 3' |||||o||||||||||||| 3' ACTCCCTTAGGACTACTACGACGTCGTCGATG 5' |
1635 | Solanum lycopersicum | TCATCTTCATCATCATCTTTA | alignment | plot | GSM553690-9231 | Solyc11g071910.1.1 cdna:novel chromosome:SL2.40:11:52312893:52321825:1 gene:Solyc11g071910.1 transcript:Solyc11g071910.1.1 | 0 | 1508 | 0.03 | 11 | 11 | 2.5 | 5' TCATCTTCATCATCATCTTTA 3' |||||o||||| |||||o|o| 3' TAGGAGTAGGAGTAGGAGTAGGAGTAGCAGCA 5' |
1636 | Triticum aestivum | ACTCGTCCTCTTCCTCTTCCT | alignment | plot | GSM911923 | gi|241985460|gb|AK332721.1|AK332721 HTC Triticum aestivum cDNA, clone: WT004_L07, cultivar: Chinese Spring. | 2 | 50 | 0.04 | 7 | 7 | 2 | 5' ACTCG-TCCTCTTCCTCTTCCT 3' ||||| ||| |||||||||||| 3' GGCTGAGCTAGGCGAAGGAGAAGGAGAAGGAG 5' |
1637 | Triticum aestivum | CTACTCCCTCCGTTCGAAA | alignment | plot | GSM911923 | gi|241990229|gb|AK330571.1|AK330571 HTC Triticum aestivum cDNA, clone: SET4_M12, cultivar: Chinese Spring. | 2 | 205 | 0.01 | 3 | 3 | 2 | 5' CTACTCCCTCCGTTCGAAA 3' ||||||| |||||||| || 3' TATAGATGAGGAAGGCAAGCCTTAATGAACAG 5' |
1638 | Triticum aestivum | TGAAGCTGACAGCATGATCTA | alignment | plot | GSM911923 | gi|241983819|gb|AK331761.1|AK331761 HTC Triticum aestivum cDNA, clone: WT002_E17, cultivar: Chinese Spring. | 2 | 875 | 0.05 | 8 | 8 | 3 | 5' TGAAGCTGACAGCATGATCTA 3' |o||| |||||||||o||| | 3' TGAAATTTCTACTGTCGTATTAG-TCCTCCTA 5' |
1639 | Triticum aestivum | TTGAGCCGTGCCAATATCACG | alignment | plot | GSM911923 | gi|241986925|gb|AK334186.1|AK334186 HTC Triticum aestivum cDNA, clone: WT009_E16, cultivar: Chinese Spring. | 0 | 1187 | 0 | 1903 | 1903 | 2 | 5' TTGAGCCGTGCCAATATCACG 3' ||||||||o||||||||| |o 3' CACTAACTCGGCGCGGTTATAGAGTGCGCGCG 5' |
1640 | Triticum aestivum | CGGTTGGGCTGTATGATGGCGA | alignment | plot | GSM911923 | gi|21736|gb|X07780.1|X07780 PLN Wheat mRNA for fructose-1,6-bisphosphatase (EC 3.1.3.11). | 2 | 677 | 0 | 3 | 3 | 3 | 5' CGGTTGGGCTGTATGATGGCGA 3' ||| ||||||||| |||| ||| 3' AGCAGCCTACCCGACAT-CTACGGCTTCTACC 5' |
1641 | Triticum aestivum | TCCGGAGGGATTCCCTCCTTG | alignment | plot | GSM911923 | gi|32351003|gb|AY290730.1|AY290730 PLN Triticum aestivum ubiquitin-like mRNA, partial sequence. | 2 | 272 | 0 | 38 | 38 | 2 | 5' TCCGGAGGGATTCCCTCCTTG 3' ||||| ||||| ||||||||| 3' GACCAGGCCGCCCTACGGGAGGAACAGGACCT 5' |
1642 | Triticum aestivum | TAGCCAAGGATGATTTGCC | alignment | plot | GSM911923 | gi|45861200|gb|AY568297.1|AY568297 PLN Triticum aestivum CCAAT-box transcription factor complex WHAP3 (WHAP3) mRNA, complete cds | 0 | 824 | 0 | 109 | 14.5165 | 2 | 5' TAGCCAAGGATGATTTGCC 3' ||||||||||||||||| 3' TGTATTCGGTTCCTACTAAACGACCCCCGTTT 5' |
1643 | Triticum aestivum | TAGCCAAGGATGATTTGCCT | alignment | plot | GSM911923 | gi|45861200|gb|AY568297.1|AY568297 PLN Triticum aestivum CCAAT-box transcription factor complex WHAP3 (WHAP3) mRNA, complete cds | 0 | 824 | 0 | 109 | 14.5165 | 2 | 5' TAGCCAAGGATGATTTGCCT 3' ||||||||||||||||| | 3' TGTATTCGGTTCCTACTAAACG-ACCCCCGTT 5' |
1644 | Triticum aestivum | TCCCTCTGTAAAGAAATATTA | alignment | plot | GSM911923 | gi|241986377|gb|AK333638.1|AK333638 HTC Triticum aestivum cDNA, clone: WT006_P13, cultivar: Chinese Spring. | 2 | 5346 | 0.01 | 3 | 3 | 3 | 5' TCCCTCTGTAAAGAAATATTA 3' ||||||||||||o||| |o| 3' TACGAGGGAGACATTTTTTTCTGACTTTGTTA 5' |
1645 | Triticum aestivum | CTCCGTCCCAAAATATAAGAA | alignment | plot | GSM911923 | gi|241985236|gb|AK332496.1|AK332496 HTC Triticum aestivum cDNA, clone: WT004_B23, cultivar: Chinese Spring. | 2 | 2753 | 0 | 5 | 5 | 2.5 | 5' CTCCGTCCCAAAATATAAGAA 3' |||||o|||| ||||||||| 3' GAGAGAGGCGGGGTATTATATTCTCGTAAAAA 5' |
1646 | Triticum aestivum | AGAGCAGGTACAATGGCAGGC | alignment | plot | GSM911923 | gi|241983718|gb|AK331660.1|AK331660 HTC Triticum aestivum cDNA, clone: WT002_A21, cultivar: Chinese Spring. | 2 | 812 | 0 | 22 | 11 | 2.5 | 5' AGAG-CAGGTACAATGGCAGGC 3' |||| |||||||||||| |o|| 3' ATCTCTCAGTCCATGTTACCCTTCGTGGGCTA 5' |
1647 | Triticum aestivum | TCCGGAGGGATTCCCTCCTTG | alignment | plot | GSM911923 | gi|155965253|gb|EU081898.1|EU081898 PLN Triticum aestivum polyubiquitin (WubiG) mRNA, partial cds. | 2 | 895 | 0 | 161 | 32.2 | 2.5 | 5' TCCGGAGGGATTCCCTCCTTG 3' ||||| ||o|| ||||||||| 3' GACCAGGCCCCCTTACGGGAGGAACAGGACCT 5' |
1648 | Triticum aestivum | TCCGGAGGGATTCCCTCCTTG | alignment | plot | GSM911923 | gi|155965253|gb|EU081898.1|EU081898 PLN Triticum aestivum polyubiquitin (WubiG) mRNA, partial cds. | 2 | 1123 | 0 | 161 | 32.2 | 2.5 | 5' TCCGGAGGGATTCCCTCCTTG 3' ||||| ||o|| ||||||||| 3' GACCAGGCCCCCTTACGGGAGGAACAGGACCT 5' |
1649 | Triticum aestivum | TAGCCAAGGATGATTTGCC | alignment | plot | GSM911923 | gi|45861204|gb|AY568299.1|AY568299 PLN Triticum aestivum CCAAT-box transcription factor complex WHAP5 (WHAP5) mRNA, complete cds | 0 | 823 | 0 | 109 | 14.5165 | 1 | 5' TAGCCAAGGATGATTTGCC 3' |||||||||||||||||| 3' TGTATTCGGTTCCTACTAAACGGCCCCCGTTT 5' |
1650 | Triticum aestivum | TAGCCAAGGATGATTTGCC | alignment | plot | GSM911923 | gi|32129063|gb|BT009512.1|BT009512 PLN Triticum aestivum clone wr1.pk0094.f2:fis, full insert mRNA sequence. | 2 | 658 | 0 | 109 | 14.5165 | 1 | 5' TAGCCAAGGATGATTTGCC 3' |||||||||||||||||| 3' TGTATTCGGTTCCTACTAAACGGTCCCCCGTT 5' |
1651 | Triticum aestivum | ATGTGTCACTGAAATGTGGGC | alignment | plot | GSM911923 | gi|241983873|gb|AK331815.1|AK331815 HTC Triticum aestivum cDNA, clone: WT002_G20, cultivar: Chinese Spring. | 0 | 2096 | 0.02 | 36 | 36 | 4 | 5' ATGTGTCACTGAAATGTGGGC 3' | |||||||||| |oo||oo| 3' ATTGT-CACAGTGACTCTGTACTTGTTCTTTC 5' |
1652 | Triticum aestivum | TAGCCAAGGATGATTTGCC | alignment | plot | GSM911923 | gi|45861218|gb|AY568306.1|AY568306 PLN Triticum aestivum CCAAT-box transcription factor complex WHAP12 (WHAP12) mRNA, complete c | 0 | 818 | 0 | 60 | 8.5641 | 1 | 5' TAGCCAAGGATGATTTGCC 3' |||||||||||||||||| 3' TGTATTCGGTTCCTACTAAACGGTCCCCCGTT 5' |
1653 | Triticum aestivum | TCCACAGGCTTTCTTGAACTG | alignment | plot | GSM911923 | gi|241986105|gb|AK333366.1|AK333366 HTC Triticum aestivum cDNA, clone: WT006_E19, cultivar: Chinese Spring. | 1 | 631 | 0 | 36 | 36 | 3.5 | 5' TCCACAGGCTTTCTTGAACTG 3' ||||||o|||| ||||| || 3' GAGGAGGTGTTCGAA-GAACTCGAGTGGTTAG 5' |
1654 | Triticum aestivum | TGATTGAGCCGTGCCAATAT | alignment | plot | GSM911923 | gi|241986925|gb|AK334186.1|AK334186 HTC Triticum aestivum cDNA, clone: WT009_E16, cultivar: Chinese Spring. | 2 | 1190 | 0 | 336 | 336 | 0.5 | 5' TGATTGAGCCGTGCCAATAT 3' |||||||||||o|||||||| 3' GACCACTAACTCGGCGCGGTTATAGAGTGCGC 5' |
1655 | Triticum aestivum | CTCCGTCCCAAAATATAAGAA | alignment | plot | GSM911923 | gi|241986094|gb|AK333355.1|AK333355 HTC Triticum aestivum cDNA, clone: WT006_E09, cultivar: Chinese Spring. | 2 | 825 | 0.03 | 11 | 11 | 3 | 5' CTCCGTCCCAAAATATAAGAA 3' ||| |||||| ||||||||| 3' GAGAGAGACAGGGTATTATATTCTCGTAAAAA 5' |
1656 | Triticum aestivum | AGAATCCTGATGATGCTGCAG | alignment | plot | GSM911923 | gi|52854305|gb|AY645945.1|AY645945 PLN Triticum aestivum floral homeotic protein (Q) mRNA, complete cds. | 2 | 1374 | 0 | 10 | 5 | 0.5 | 5' AGAATCCTGATGATGCTGCAG 3' |o||||||||||||||||||| 3' CATCTTTTAGGACTACTACGACGTCGCATTTC 5' |
1657 | Triticum aestivum | TGACAGAAGAGAGTGAGCACA | alignment | plot | GSM911923 | gi|241986369|gb|AK333630.1|AK333630 HTC Triticum aestivum cDNA, clone: WT006_P06, cultivar: Chinese Spring. | 2 | 1645 | 0.03 | 153 | 153 | 3 | 5' TGACAGAAGAGAGTGAGCACA 3' ||||||||||||| ||||| 3' ACGAACTGTCTTCTCTCTCTCGTACGACTTCT 5' |
1658 | Triticum aestivum | GCCTGGCTCCCTGTATGCC | alignment | plot | GSM911923 | gi|241983915|gb|AK331857.1|AK331857 HTC Triticum aestivum cDNA, clone: WT002_I17, cultivar: Chinese Spring. | 0 | 1088 | 0 | 26 | 26 | 2.5 | 5' GCCTGGCTCCCTGTATGCC 3' |||||o|| | |||||||| 3' GGTCCGGACTGA-GTACATACGGAAGGGAAAG 5' |
1659 | Triticum aestivum | TAGCCAAGGATGATTTGCC | alignment | plot | GSM911923 | gi|32128487|gb|BT008936.1|BT008936 PLN Triticum aestivum clone wdi1c.pk002.b10:fis, full insert mRNA sequence. | 0 | 947 | 0 | 82 | 41 | 2 | 5' TAGCCAAGGATGATTTGCC 3' |||||||||||| ||||| 3' TTATTTCGGTTCCTACTCAACGGTCTGGTGTG 5' |
1660 | Triticum aestivum | CGTACTCCCTCCGTTCCTTTT | alignment | plot | GSM911923 | gi|241983773|gb|AK331715.1|AK331715 HTC Triticum aestivum cDNA, clone: WT002_C22, cultivar: Chinese Spring. | 2 | 874 | 0.04 | 2 | 2 | 3 | 5' CGTACTCCCTCCGTTCCTTTT 3' || ||||| ||||o|||||o| 3' AGAGGC-TGAGGTAGGCGAGGAAGAGGTAGAC 5' |
1661 | Triticum aestivum | TGCAGTTGCTGTCTCAAGCTT | alignment | plot | GSM911923 | gi|241987773|gb|AK335030.1|AK335030 HTC Triticum aestivum cDNA, clone: WT011_N18, cultivar: Chinese Spring. | 2 | 883 | 0.05 | 2 | 2 | 2.5 | 5' TGCAGTTGCTGTCTCA-AGCTT 3' |||||||o|||||||| | ||| 3' GGGAACGTCAATGACAGAGTGTAGAATTCGTA 5' |
1662 | Triticum aestivum | CCGGACCAGGCTTCATTCCCA | alignment | plot | GSM911923 | gi|241983944|gb|AK331886.1|AK331886 HTC Triticum aestivum cDNA, clone: WT002_J20, cultivar: Chinese Spring. | 0 | 964 | 0 | 2453 | 2453 | 1 | 5' CCGGACCAGGCTTCATTCCCA 3' |||||||||||||||| |||| 3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAGC 5' |
1663 | Triticum aestivum | TAGCCAAGGATGATTTGCC | alignment | plot | GSM911923 | gi|32128614|gb|BT009063.1|BT009063 PLN Triticum aestivum clone wds1f.pk002.p21:fis, full insert mRNA sequence. | 0 | 1145 | 0 | 438 | 438 | 1.5 | 5' TAGCCAAGGATGATTTGCC 3' |||||||o|||||||||| 3' TCATCTCGGTTCTTACTAAACGGACGTCTGTT 5' |
1664 | Triticum aestivum | AGCCAAGGATGATTTGCCTG | alignment | plot | GSM911923 | gi|32128614|gb|BT009063.1|BT009063 PLN Triticum aestivum clone wds1f.pk002.p21:fis, full insert mRNA sequence. | 2 | 1144 | 0 | 6 | 6 | 0.5 | 5' AGCCAAGGATGATTTGCCTG 3' |||||||o|||||||||||| 3' CATCTCGGTTCTTACTAAACGGACGTCTGTTG 5' |
1665 | Triticum aestivum | TTGTCGCAGAAATGGATGTATCTA | alignment | plot | GSM911923 | gi|241985618|gb|AK332879.1|AK332879 HTC Triticum aestivum cDNA, clone: WT005_B16, cultivar: Chinese Spring. | 2 | 685 | 0 | 27 | 27 | 4 | 5' TTGTCGCAGAAATGGATGTATCTA 3' |||| ||||| | o||||||||o| 3' TAGTAACAACGTCTGTTTCTACATAGGTGGTT 5' |
1666 | Triticum aestivum | GAGCTGCTGGAGCTTTTCCAC | alignment | plot | GSM911923 | gi|241986655|gb|AK333916.1|AK333916 HTC Triticum aestivum cDNA, clone: WT008_L05, cultivar: Chinese Spring. | 2 | 390 | 0.04 | 2 | 2 | 3 | 5' GAGCTGCTGGAGCTTTTCCAC 3' ||||||||o||o| || |||| 3' CATTCTCGACGATCTTGCAA-GGTGGACGCGC 5' |
1667 | Triticum aestivum | CCTCTTCCTCTTCCTCCTCGC | alignment | plot | GSM911923 | gi|40644803|gb|AJ577389.1|AJ577389 PLN Triticum aestivum partial mRNA for putative DIP2 protein. | 1 | 793 | 0.05 | 10 | 10 | 4 | 5' CCTCTTCCTCTTCCTCCTCGC 3' |||||||||||| | ||| | 3' GACAGGAGAAGGAGAACGCGGA-CTTTGTTGT 5' |
1668 | Triticum aestivum | AATTATGGAACGGAGGGAGTA | alignment | plot | GSM911923 | gi|241989722|gb|AK330263.1|AK330263 HTC Triticum aestivum cDNA, clone: SET4_A13, cultivar: Chinese Spring. | 2 | 3328 | 0.03 | 3 | 3 | 3 | 5' AATTATGGAACGGAGGGAGTA 3' | ||| |||||||||| |||| 3' AATATAAAT-CCTTGCCTCCGTCATCTTTCGT 5' |
1669 | Triticum aestivum | TCCGGAGGGATTCCCTCCTTG | alignment | plot | GSM911923 | gi|33325639|gb|AF517839.1|AF517839 PLN Triticum aestivum ubiquitin protein mRNA, partial cds. | 2 | 107 | 0 | 74 | 74 | 2 | 5' TCCGGAGGGATTCCCTCCTTG 3' ||||| ||||| ||||||||| 3' GACCAGGCCCCCCTACGGGAGGAACAGGACCT 5' |
1670 | Triticum aestivum | TATTATGGGACGGAGGGAGTA | alignment | plot | GSM911923 | gi|241988462|gb|AK335720.1|AK335720 HTC Triticum aestivum cDNA, clone: WT013_J19, cultivar: Chinese Spring. | 2 | 3338 | 0 | 2 | 2 | 2 | 5' TATTATGGGACGGAGGGAGTA 3' |||| | |||||||||||||| 3' GTTCATAAAAGCCTGCCTCCCTCATGTTTGAA 5' |
1671 | Triticum aestivum | TAGCCAAGGATGATTTGCC | alignment | plot | GSM911923 | gi|32129145|gb|BT009594.1|BT009594 PLN Triticum aestivum clone wre1n.pk0066.e4:fis, full insert mRNA sequence. | 0 | 906 | 0 | 113 | 56.5 | 2 | 5' TAGCCAAGGATGATTTGCC 3' |||||||||||| ||||| 3' AGTATTCGGTTCCTACTTAACGGTGGCCGTCG 5' |
1672 | Triticum aestivum | CTCCGTTCCTAAATATAAGTT | alignment | plot | GSM911923 | gi|241989722|gb|AK330263.1|AK330263 HTC Triticum aestivum cDNA, clone: SET4_A13, cultivar: Chinese Spring. | 2 | 3463 | 0 | 2 | 2 | 0.5 | 5' CTCCGTTCCTAAATATAAGTT 3' ||||||||||||||||||||o 3' GAGGGAGGCAAGGATTTATATTCAGAAAAATC 5' |
1673 | Triticum aestivum | CTCCGTTCCTAAATATAAGCT | alignment | plot | GSM911923 | gi|241989722|gb|AK330263.1|AK330263 HTC Triticum aestivum cDNA, clone: SET4_A13, cultivar: Chinese Spring. | 2 | 3463 | 0 | 2 | 2 | 1 | 5' CTCCGTTCCTAAATATAAGCT 3' ||||||||||||||||||| | 3' GAGGGAGGCAAGGATTTATATTC-AGAAAAAT 5' |
1674 | Triticum aestivum | TCCACAGGCTTTCTTGAACTG | alignment | plot | GSM911923 | gi|241990635|gb|AK330792.1|AK330792 HTC Triticum aestivum cDNA, clone: SET5_F03, cultivar: Chinese Spring. | 0 | 659 | 0 | 102 | 102 | 1 | 5' TCCACAGGCTTTCTTGAACTG 3' ||||||||||||||||||| | 3' GCAAAGGTGTCCGAAAGAACTTGCCAACGCCG 5' |
1675 | Triticum aestivum | TTTGGGACGGAGGGAGTACTA | alignment | plot | GSM911923 | gi|241988462|gb|AK335720.1|AK335720 HTC Triticum aestivum cDNA, clone: WT013_J19, cultivar: Chinese Spring. | 2 | 3335 | 0 | 3 | 3 | 2 | 5' TTTGGGACGGAGGGAGTACTA 3' ||| ||||||||||||||| | 3' CATAAAAGCCTGCCTCCCTCATGTTTGAAAAT 5' |
1676 | Triticum aestivum | TTTGGAACGGAGGGAGTAT | alignment | plot | GSM911923 | gi|241988462|gb|AK335720.1|AK335720 HTC Triticum aestivum cDNA, clone: WT013_J19, cultivar: Chinese Spring. | 2 | 3335 | 0.02 | 3 | 3 | 2 | 5' TTTGGAACGGAGGGAGTAT 3' ||o|| ||||||||||||o 3' ATAAAAGCC-TGCCTCCCTCATGTTTGAAAAT 5' |
1677 | Triticum aestivum | TTTTGGAACGGAGGGAGTA | alignment | plot | GSM911923 | gi|241989722|gb|AK330263.1|AK330263 HTC Triticum aestivum cDNA, clone: SET4_A13, cultivar: Chinese Spring. | 2 | 3326 | 0 | 18 | 9 | 2 | 5' TTTTGGAACGGAGGGAGTA 3' ||| |||||||||| |||| 3' ATATAAATCCTTGCCTCCGTCATCTTTCGTGG 5' |
1678 | Triticum aestivum | CCGGACCAGGCTTCATTCCCA | alignment | plot | GSM911923 | gi|241987680|gb|AK334937.1|AK334937 HTC Triticum aestivum cDNA, clone: WT011_I24, cultivar: Chinese Spring. | 0 | 789 | 0 | 262 | 262 | 0 | 5' CCGGACCAGGCTTCATTCCCA 3' ||||||||||||||||||||| 3' CTTAGGCCTGGTCCGAAGTAAGGGTAGTAAAC 5' |
1679 | Triticum aestivum | TCCACATTGGGTCAATGTTCC | alignment | plot | GSM911923 | gi|241988441|gb|AK335699.1|AK335699 HTC Triticum aestivum cDNA, clone: WT013_I22, cultivar: Chinese Spring. | 2 | 1109 | 0.02 | 11 | 11 | 3 | 5' TCCACATTGGGTCAAT-GTTCC 3' || ||||||||||||| ||| | 3' TAACAGCTGTAACCCAGTTAACAAAGGAAGTG 5' |
1680 | Triticum aestivum | TTTTGGGACGGAGGGAGTATT | alignment | plot | GSM911923 | gi|241986137|gb|AK333398.1|AK333398 HTC Triticum aestivum cDNA, clone: WT006_G02, cultivar: Chinese Spring. | 2 | 2647 | 0.03 | 4 | 4 | 3 | 5' TTTTGGGACGGAGGGAGTATT 3' |||||||||||||| |o||o 3' TCTTAAAACCCTGCCTCCATTATGTAATGTAA 5' |
1681 | Triticum aestivum | TGCGACAAGTAATTCCGAACGGA | alignment | plot | GSM911923 | gi|42391852|gb|AB161682.1|AB161682 PLN Triticum aestivum WCSP2 mRNA for cold shock domain protein 2, complete cds. | 2 | 878 | 0.05 | 30 | 15 | 4 | 5' TGCGACAAG-TAATTCCGAACGGA 3' oo||||||| |||o| ||||||o| 3' GCTGTGCTGTTCTATTGAAGCTTGCTTGTTAT 5' |
1682 | Triticum aestivum | TTACTCCCTCCGTCCCACAAT | alignment | plot | GSM911923 | gi|241986624|gb|AK333885.1|AK333885 HTC Triticum aestivum cDNA, clone: WT008_F19, cultivar: Chinese Spring. | 1 | 1232 | 0 | 3 | 3 | 4 | 5' TTACTCCCTCCGTCCCACAAT 3' ||||| ||| |||||| ||| 3' ACTCTATGAGTGAGCCAGGGTATTATATCCTA 5' |
1683 | Triticum aestivum | TTTGGGACGGAGGGAGTACTT | alignment | plot | GSM911923 | gi|241985579|gb|AK332840.1|AK332840 HTC Triticum aestivum cDNA, clone: WT005_A03, cultivar: Chinese Spring. | 2 | 1654 | 0 | 8 | 4 | 1.5 | 5' TTTGGGACGGAGGGAGTACTT 3' |||||o|||||||||||| || 3' GATAAAACCTTGCCTCCCTCATCAATAGTCCC 5' |
1684 | Triticum aestivum | GTGGACTGAAGTGAGCTCCCT | alignment | plot | GSM911923 | gi|241989307|gb|AK336285.1|AK336285 HTC Triticum aestivum cDNA, clone: SET3_K24, cultivar: Chinese Spring. | 2 | 861 | 0.01 | 6 | 6 | 3 | 5' GTGGACTGAAGTGAGCTCCCT 3' |||||||||||| ||||| | 3' CCACAACCTGACTTCACACGAGG-ACAGCTTC 5' |
1685 | Triticum aestivum | TCCGGAGGGATTCCCTCCTTG | alignment | plot | GSM911923 | gi|21815|gb|X56803.1|X56803 PLN T.aestivum L. mRNA for ubiquitin. | 2 | 109 | 0.02 | 19 | 4.75 | 2.5 | 5' TCCGGAGGGATTCCCTCCTTG 3' ||||| ||o|| ||||||||| 3' GACCAGGCCCCCTTACGGGAGGAACAGGACCT 5' |
1686 | Triticum aestivum | TTTTGGGACGGAGGGAGTATT | alignment | plot | GSM911923 | gi|241988462|gb|AK335720.1|AK335720 HTC Triticum aestivum cDNA, clone: WT013_J19, cultivar: Chinese Spring. | 2 | 3336 | 0.02 | 2 | 2 | 2.5 | 5' TTTTGGGACGGAGGGAGTATT 3' |||| ||||||||||||||o 3' TCATAAAAGCCTGCCTCCCTCATGTTTGAAAA 5' |
1687 | Triticum aestivum | TTTTGGAACGGAGGGAGTA | alignment | plot | GSM911923 | gi|241988462|gb|AK335720.1|AK335720 HTC Triticum aestivum cDNA, clone: WT013_J19, cultivar: Chinese Spring. | 2 | 3336 | 0 | 2 | 2 | 1.5 | 5' TTTTGGAACGGAGGGAGTA 3' |||o|| |||||||||||| 3' CATAAAAGCC-TGCCTCCCTCATGTTTGAAAA 5' |
1688 | Triticum aestivum | TGCAGTTGCTGCCTCAAGCTT | alignment | plot | GSM911923 | gi|241988140|gb|AK335397.1|AK335397 HTC Triticum aestivum cDNA, clone: WT012_M22, cultivar: Chinese Spring. | 2 | 896 | 0.03 | 2 | 2 | 2.5 | 5' TGCAGTTGCTGCCTCAAGCTT 3' |||||||||||||o||| || 3' TCTTACGTCAACGACGGGGTTAGACTGGCTAG 5' |
1689 | Triticum aestivum | AATTATGGAACGGAGGGAGTA | alignment | plot | GSM911923 | gi|32128877|gb|BT009326.1|BT009326 PLN Triticum aestivum clone wlm24.pk0016.f9:fis, full insert mRNA sequence. | 2 | 1880 | 0.05 | 3 | 1 | 3 | 5' AATTATGGAACGGAGGGAGTA 3' | ||| |||||||| |||||| 3' TTTATAAAT-CCTTGCCTACCTCATGATGTCT 5' |
1690 | Triticum aestivum | CACTATATTTTGGAATGGAGGGA | alignment | plot | GSM911923 | gi|241989190|gb|AK336169.1|AK336169 HTC Triticum aestivum cDNA, clone: SET3_G10, cultivar: Chinese Spring. | 2 | 1859 | 0 | 4 | 4 | 2.5 | 5' CACTATATTTTGGAATGGAGGGA 3' || | ||||||o||||||||||| 3' CTCAGT-AGATAAAATCTTACCTCCCTCATGT 5' |
1691 | Triticum aestivum | TTTTGGGACGGAGGGAGTATT | alignment | plot | GSM911923 | gi|241988219|gb|AK335477.1|AK335477 HTC Triticum aestivum cDNA, clone: WT012_P23, cultivar: Chinese Spring. | 2 | 929 | 0.01 | 7 | 1.4 | 3 | 5' TTTTGGGACGGAGGGAGTATT 3' ||| ||o|||||||o||||| 3' TTATAAATCCTTGCCTCCTTCATATACAATTA 5' |
1692 | Triticum aestivum | TTTTGGAACGGAGGGAGTAGT | alignment | plot | GSM911923 | gi|241988219|gb|AK335477.1|AK335477 HTC Triticum aestivum cDNA, clone: WT012_P23, cultivar: Chinese Spring. | 2 | 929 | 0 | 7 | 1.4 | 2.5 | 5' TTTTGGAACGGAGGGAGTAGT 3' ||| ||||||||||o|||| | 3' TTATAAATCCTTGCCTCCTTCAT-ATACAATT 5' |
1693 | Triticum aestivum | CTACTCCCTCCGTCCGAAA | alignment | plot | GSM911923 | gi|241985690|gb|AK332951.1|AK332951 HTC Triticum aestivum cDNA, clone: WT005_E12, cultivar: Chinese Spring. | 2 | 2944 | 0.04 | 2 | 2 | 3 | 5' CTACTCCCTCCGTCCGAAA 3' |||||||||| || | ||| 3' CAAAGATGAGGGAGACATGGTTTAATGAGCAG 5' |
1694 | Triticum aestivum | CTACTCCCTCCGTCCCATAAT | alignment | plot | GSM911923 | gi|241985690|gb|AK332951.1|AK332951 HTC Triticum aestivum cDNA, clone: WT005_E12, cultivar: Chinese Spring. | 2 | 2944 | 0.01 | 2 | 2 | 3 | 5' CTACTCCCTCCGTCCCATAAT 3' |||||||||| || ||| ||| 3' CAAAGATGAGGGAGACATGGT-TTAATGAGCA 5' |
1695 | Triticum aestivum | TTTTGGGACGGAGGGAGTATT | alignment | plot | GSM911923 | gi|241985579|gb|AK332840.1|AK332840 HTC Triticum aestivum cDNA, clone: WT005_A03, cultivar: Chinese Spring. | 2 | 1655 | 0 | 3 | 1.5 | 1.5 | 5' TTTTGGGACGGAGGGAGTATT 3' ||||||o|||||||||||| | 3' AGATAAAACCTTGCCTCCCTCATCAATAGTCC 5' |
1696 | Triticum aestivum | ACCTGCTCCCTCCGTCCCATA | alignment | plot | GSM911923 | gi|1754996|gb|U48690.1|U48690 PLN Triticum aestivum calmodulin TaCaM2-1 mRNA, complete cds. | 2 | 957 | 0.01 | 3 | 1.5 | 3 | 5' ACCTGCTCCCTCCGTCCCATA 3' || |o||||||||o| ||||| 3' ATGTTGTATGAGGGAGGTAAGGTATTACATCA 5' |
1697 | Triticum aestivum | TGACATGGTTGGCCCATGGAA | alignment | plot | GSM911923 | gi|241988316|gb|AK335574.1|AK335574 HTC Triticum aestivum cDNA, clone: WT013_E02, cultivar: Chinese Spring. | 2 | 3331 | 0 | 3 | 3 | 0 | 5' TGACATGGTTGGCCCATGGAA 3' ||||||||||||||||||||| 3' CGGTACTGTACCAACCGGGTACCTTAGGCATC 5' |
1698 | Triticum aestivum | TTTTGGGACGGAGGGAGTATT | alignment | plot | GSM911923 | gi|32128877|gb|BT009326.1|BT009326 PLN Triticum aestivum clone wlm24.pk0016.f9:fis, full insert mRNA sequence. | 2 | 1878 | 0.02 | 7 | 1.4 | 3 | 5' TTTTGGGACGGAGGGAGTATT 3' ||| ||o||||| ||||||o| 3' TTATAAATCCTTGCCTACCTCATGATGTCTGA 5' |
1699 | Triticum aestivum | CATGTGCCTTTCTTCTCCACC | alignment | plot | GSM911923 | gi|32128556|gb|BT009005.1|BT009005 PLN Triticum aestivum clone wdk2c.pk018.g2:fis, full insert mRNA sequence. | 2 | 1711 | 0.05 | 8 | 8 | 3 | 5' CATGTGCCTTTCTTCTCCACC 3' ||||| ||||o|o|||| ||| 3' TAAAGTACAAGGAAGGGAGAGTTGGGAAAATA 5' |
1700 | Triticum aestivum | CATACTCCCTCCGTTCCTAAA | alignment | plot | GSM911923 | gi|241983597|gb|AK331539.1|AK331539 HTC Triticum aestivum cDNA, clone: WT007_M04, cultivar: Chinese Spring. | 2 | 601 | 0.05 | 2 | 1 | 3.5 | 5' CATACTCCCTCCGTTCCTAAA 3' ||| |o|||||||o| |o||| 3' CGAGGTAAGGGGGAGGCGACGGTTTGTGTAGT 5' |
1701 | Triticum aestivum | TTTGGGACGGAGGGAGTACTT | alignment | plot | GSM911923 | gi|241989169|gb|AK336148.1|AK336148 HTC Triticum aestivum cDNA, clone: SET3_F15, cultivar: Chinese Spring. | 2 | 1145 | 0 | 5 | 5 | 2 | 5' TTTGGGACGGAGGGAGTACTT 3' ||||||||||||||||||| 3' TATAAAACCCTGCCTCCCTCATGTTATGTCGT 5' |
1702 | Triticum aestivum | TATATACTTCCTCCGTCCGGA | alignment | plot | GSM911923 | gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring. | 2 | 1420 | 0 | 2 | 2 | 3 | 5' TATATACTTCCTCCGT-CCGGA 3' ||o|||||o||||||| ||oo| 3' TTTCATGTATGAGGGAGGCAAGGTTTTATCTA 5' |
1703 | Triticum aestivum | TATTACTTCCTCCGTCCCAAA | alignment | plot | GSM911923 | gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring. | 2 | 1419 | 0.02 | 3 | 3 | 3 | 5' TATTACTTCCTCCGTCCCAAA 3' o| ||||o||||||| ||||| 3' TCATGT-ATGAGGGAGGCAAGGTTTTATCTAC 5' |
1704 | Triticum aestivum | TACTACTTCCTCTGTCCCAAA | alignment | plot | GSM911923 | gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring. | 2 | 1419 | 0.03 | 3 | 3 | 3 | 5' TAC-TACTTCCTCTGTCCCAAA 3' ||| ||||o||||o|| ||||| 3' TTCATGTATGAGGGAGGCAAGGTTTTATCTAC 5' |
1705 | Triticum aestivum | TTTTGGGACGGAGGGAGTATT | alignment | plot | GSM911923 | gi|32129003|gb|BT009452.1|BT009452 PLN Triticum aestivum clone wlmk8.pk0022.f7:fis, full insert mRNA sequence. | 2 | 792 | 0 | 7 | 1.4 | 2.5 | 5' TTTTGGGACGGAGGGAGTATT 3' ||| ||o|||||||||||| | 3' TTATAAATCCTTGCCTCCCTCATCATCTATCT 5' |
1706 | Triticum aestivum | TCCGGAGGGATTCCCTCCTTG | alignment | plot | GSM911923 | gi|126544299|gb|AY297059.2|AY297059 PLN Triticum aestivum ubiquitin (WUB1) mRNA, complete cds. | 2 | 107 | 0 | 161 | 32.2 | 2.5 | 5' TCCGGAGGGATTCCCTCCTTG 3' ||||| ||o|| ||||||||| 3' GACCAGGCCCCCTTACGGGAGGAACAGGACCT 5' |
1707 | Triticum aestivum | TTTTGGGACGGAGGGAGTATT | alignment | plot | GSM911923 | gi|241989169|gb|AK336148.1|AK336148 HTC Triticum aestivum cDNA, clone: SET3_F15, cultivar: Chinese Spring. | 2 | 1146 | 0 | 3 | 3 | 1.5 | 5' TTTTGGGACGGAGGGAGTATT 3' |||||||||||||||||||o 3' ATATAAAACCCTGCCTCCCTCATGTTATGTCG 5' |
1708 | Triticum aestivum | TGTACTTCCTCCGTCCCAAAA | alignment | plot | GSM911923 | gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring. | 2 | 1418 | 0.01 | 10 | 10 | 2.5 | 5' TGTACTTCCTCCGTCCCAAAA 3' oo||||o||||||| |||||| 3' TCATGTATGAGGGAGGCAAGGTTTTATCTACT 5' |
1709 | Triticum aestivum | ACTACTCCCTCCGTTCCTAAA | alignment | plot | GSM911923 | gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring. | 2 | 1418 | 0 | 10 | 10 | 2 | 5' ACTACTCCCTCCGTTCCTAAA 3' | ||||||||||||||| ||| 3' CATGT-ATGAGGGAGGCAAGGTTTTATCTACT 5' |
1710 | Triticum aestivum | CTGCACTGCCTCTTCCCTGGC | alignment | plot | GSM911923 | gi|241986355|gb|AK333616.1|AK333616 HTC Triticum aestivum cDNA, clone: WT006_O16, cultivar: Chinese Spring. | 2 | 728 | 0.01 | 2 | 2 | 2.5 | 5' CTGCACTGCCTCTTCCCTGGC 3' ||||||||||||o ||||| | 3' TCGTGACGTGACGGAGGTGGGACAGGAGCGGG 5' |
1711 | Triticum aestivum | TTTGGATTGAAGGGAGCTCTG | alignment | plot | GSM911923 | gi|47680448|gb|AY615200.1|AY615200 PLN Triticum aestivum transcription factor Myb3 (Myb3) mRNA, complete cds. | 0 | 988 | 0 | 81 | 81 | 2.5 | 5' TTTGGATTGAAGGGAGCTCTG 3' o||||| ||||||||||||oo 3' CATAGAACCTCACTTCCCTCGAGGTAGAAGTT 5' |
1712 | Triticum aestivum | TTGTTGGGGAAGCTTCTGGAC | alignment | plot | GSM911923 | gi|241990281|gb|AK330623.1|AK330623 HTC Triticum aestivum cDNA, clone: SET4_O13, cultivar: Chinese Spring. | 2 | 2029 | 0.02 | 3 | 3 | 2.5 | 5' TTGTTGGGGAAGCTTCTGGAC 3' ||o||||||||||o||o||| 3' TACTAATAACCCCTTCGGAGGCCTAAGTGACT 5' |
1713 | Triticum aestivum | TTTGGGACGGAGGGAGTACTT | alignment | plot | GSM911923 | gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring. | 2 | 1349 | 0.01 | 8 | 4 | 2.5 | 5' TTTGGGACGGAGGGAGTACTT 3' |||||o||||||||||||| 3' GATAAAACCTTGCCTCCCTCATGCTTTTAGTG 5' |
1714 | Triticum aestivum | ACTCGTCCTCTTCCTCTTCCT | alignment | plot | GSM911923 | gi|241986130|gb|AK333391.1|AK333391 HTC Triticum aestivum cDNA, clone: SET2_B01, cultivar: Chinese Spring. | 2 | 487 | 0.05 | 3 | 3 | 2.5 | 5' ACTCGTCCTCTTCCTCTTCCT 3' |||| |||||||||||o|| | 3' AGCATGAGGAGGAGAAGGAGGAGCATGAGGAG 5' |
1715 | Triticum aestivum | CTCCGTCCCAAAATATAAGAA | alignment | plot | GSM911923 | gi|241986608|gb|AK333869.1|AK333869 HTC Triticum aestivum cDNA, clone: SET2_C23, cultivar: Chinese Spring. | 2 | 1506 | 0 | 3 | 3 | 1 | 5' CTCCGTCCCAAAATATAAGAA 3' |||||||||| |||||||||| 3' GAGGGAGGCAGGGTATTATATTCTTGCAAAAA 5' |
1716 | Triticum aestivum | TGAGAAGGTAGATCATAATAG | alignment | plot | GSM911923 | gi|241986385|gb|AK333646.1|AK333646 HTC Triticum aestivum cDNA, clone: WT006_P22, cultivar: Chinese Spring. | 0 | 579 | 0 | 19 | 19 | 3.5 | 5' TGAGAAGGTAGATCATAATAG 3' |||| ||| ||||||o |||| 3' TAGTACTC-TCCCTCTAGTGCTATCGAGACCT 5' |
1717 | Triticum aestivum | TATTACTTCCTCCGTCCCAAA | alignment | plot | GSM911923 | gi|241985826|gb|AK333087.1|AK333087 HTC Triticum aestivum cDNA, clone: WT005_J20, cultivar: Chinese Spring. | 2 | 1771 | 0.05 | 2 | 2 | 3.5 | 5' TATTACTTCCTCCGTCCCAAA 3' |||||o|||||| ||||| | 3' GCCTTTAATGGAGGAGG-AGGGTATCTTGGCC 5' |
1718 | Triticum aestivum | ACATTATGGAACGGAGGGAGT | alignment | plot | GSM911923 | gi|241984777|gb|AK332037.1|AK332037 HTC Triticum aestivum cDNA, clone: WT002_P20, cultivar: Chinese Spring. | 2 | 804 | 0.01 | 2 | 2 | 2.5 | 5' ACATTATGGAACGGAGGGAGT 3' ||||||||o| |o||o||||| 3' GTAATGTAATACTT-GTCTTCCTCATGTTAGG 5' |
1719 | Triticum aestivum | TATTATGGGACGGAGGGAGTA | alignment | plot | GSM911923 | gi|241984777|gb|AK332037.1|AK332037 HTC Triticum aestivum cDNA, clone: WT002_P20, cultivar: Chinese Spring. | 2 | 804 | 0 | 2 | 2 | 3 | 5' TATTATGGGACGGAGGGAGTA 3' o||||| |o||o||o|||||| 3' TAATGTAATA-CTTGTCTTCCTCATGTTAGGT 5' |
1720 | Triticum aestivum | GTGCGACAAGTAATTCGGAAC | alignment | plot | GSM911923 | gi|241983253|gb|AK331193.1|AK331193 HTC Triticum aestivum cDNA, clone: SET6_K18, cultivar: Chinese Spring. | 2 | 472 | 0.03 | 3 | 3 | 3 | 5' GTGCGACAAGTAATTCGGAAC 3' ||||||| ||o||| |o|||| 3' ATGTCACGCTG-TCGTTACGTCTTGCGTTCCT 5' |
1721 | Triticum aestivum | TTAGATGAGAAGGCAGATCATA | alignment | plot | GSM911923 | gi|241988983|gb|AK330205.1|AK330205 HTC Triticum aestivum cDNA, clone: SET3_O05, cultivar: Chinese Spring. | 2 | 679 | 0.03 | 8 | 8 | 3 | 5' TTAGATGAGAAGGCAGATCATA 3' |||||||||||| |||||| | 3' AGGATATCTACTCTTCCATCTAGTTTTGATGA 5' |
1722 | Triticum aestivum | CGGGTCGGCGCTCCACGCGGC | alignment | plot | GSM911923 | gi|241985274|gb|AK332534.1|AK332534 HTC Triticum aestivum cDNA, clone: WT004_D14, cultivar: Chinese Spring. | 2 | 159 | 0.04 | 6 | 6 | 3 | 5' CGGGTCGGCGCTCCACGCGGC 3' ||||||o||| o|| |||||| 3' CAACGCCCAGTCGCAGGGGGCGCCGGGGCAGT 5' |
1723 | Triticum aestivum | ATTATGGAACGGAGGGAGT | alignment | plot | GSM911923 | gi|241987650|gb|AK334907.1|AK334907 HTC Triticum aestivum cDNA, clone: WT011_H08, cultivar: Chinese Spring. | 2 | 1776 | 0.02 | 4 | 1.08333 | 2 | 5' ATTATGGAACGGAGGGAGT 3' ||| |||||||||||||| 3' TTATAAAT-CCTTGCCTCCCTCATGTAGGTAT 5' |
1724 | Triticum aestivum | AATTATGGAACGGAGGGAGTG | alignment | plot | GSM911923 | gi|241987650|gb|AK334907.1|AK334907 HTC Triticum aestivum cDNA, clone: WT011_H08, cultivar: Chinese Spring. | 2 | 1777 | 0.02 | 3 | 1 | 2.5 | 5' AATTATGGAACGGAGGGAGTG 3' | ||| ||||||||||||||o 3' TTTATAAAT-CCTTGCCTCCCTCATGTAGGTA 5' |
1725 | Triticum aestivum | AGATGTACTCCCTCCGTCCGA | alignment | plot | GSM911923 | gi|241983674|gb|AK331616.1|AK331616 HTC Triticum aestivum cDNA, clone: WT007_P05, cultivar: Chinese Spring. | 2 | 5254 | 0 | 2 | 2 | 2.5 | 5' AGATGTACTCCCTCCGTCCGA 3' ||o|||||||||||||||| 3' ATGTAGTATATGAGGGAGGCAGGCTTTTTCGA 5' |
1726 | Triticum aestivum | TTTTGGGACGGAGGGAGTATT | alignment | plot | GSM911923 | gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring. | 2 | 1350 | 0.01 | 3 | 1.5 | 2 | 5' TTTTGGGACGGAGGGAGTATT 3' ||||||o||||||||||||o 3' AGATAAAACCTTGCCTCCCTCATGCTTTTAGT 5' |
1727 | Triticum aestivum | TTACTCCCTCCGTCCCACAAT | alignment | plot | GSM911923 | gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring. | 2 | 1417 | 0.03 | 4 | 4 | 3 | 5' TTACTCCCTCCGTCCCACAAT 3' |||||||||||| ||| ||| 3' CATGTATGAGGGAGGCAAGGTTTTATCTACTG 5' |
1728 | Triticum aestivum | ATACTCCCTCCGTCCTCGAAA | alignment | plot | GSM911923 | gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring. | 2 | 1417 | 0 | 4 | 4 | 2.5 | 5' ATACTCCCTCCGTCCTCGAAA 3' ||||||||||||| | |o||| 3' CATGTATGAGGGAGGCAAG-GTTTTATCTACT 5' |
1729 | Triticum aestivum | ATACTCCCTCTGTCCCAAATA | alignment | plot | GSM911923 | gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring. | 2 | 1417 | 0.01 | 4 | 4 | 2.5 | 5' ATACTCCCTCTGTCCCAAATA 3' ||||||||||o|| ||||| | 3' CATGTATGAGGGAGGCAAGGTTT-TATCTACT 5' |
1730 | Triticum aestivum | TATTTGTTTACAGAGGGAGTT | alignment | plot | GSM911923 | gi|241988346|gb|AK335604.1|AK335604 HTC Triticum aestivum cDNA, clone: WT013_F06, cultivar: Chinese Spring. | 2 | 2379 | 0 | 4 | 4 | 2 | 5' TATTTGTTTACAGAGGGAGTT 3' |||| ||||||||||||||| 3' GAATATAATCAAATGTCTCCCTCATTATGCGT 5' |
1731 | Triticum aestivum | TATATTTTGGGACGGAGGGAG | alignment | plot | GSM911923 | gi|241985433|gb|AK332693.1|AK332693 HTC Triticum aestivum cDNA, clone: WT004_K03, cultivar: Chinese Spring. | 2 | 1142 | 0.01 | 4 | 4 | 2.5 | 5' TATATTTTGGGACGGAGGGAG 3' |||||| ||o|||||||||| 3' CTGTTTATAAATCCTTGCCTCCCTCATTTTGC 5' |
1732 | Triticum aestivum | CTCCGTCCCAAAATATAAGAA | alignment | plot | GSM911923 | gi|241990551|gb|AK330708.1|AK330708 HTC Triticum aestivum cDNA, clone: SET5_B19, cultivar: Chinese Spring. | 2 | 3277 | 0 | 2 | 2 | 1 | 5' CTCCGTCCCAAAATATAAGAA 3' |||||||||| |||||||||| 3' GAGGGAGGCAGGGTATTATATTCTTGCAAAAA 5' |
1733 | Triticum aestivum | TTTGGGACGGAGGGAGTACTA | alignment | plot | GSM911923 | gi|241986678|gb|AK333939.1|AK333939 HTC Triticum aestivum cDNA, clone: WT008_P05, cultivar: Chinese Spring. | 2 | 1801 | 0 | 6 | 3 | 2.5 | 5' TTTGGGACGGAGGGAGTACTA 3' || ||o|||||||||||| || 3' TATAAATCCTTGCCTCCCTCAT-ATACTATGA 5' |
1734 | Triticum aestivum | TTTGGGACGGAGGGAGTACAT | alignment | plot | GSM911923 | gi|241986678|gb|AK333939.1|AK333939 HTC Triticum aestivum cDNA, clone: WT008_P05, cultivar: Chinese Spring. | 2 | 1801 | 0 | 6 | 3 | 2.5 | 5' TTTGGGACGGAGGGAGTACAT 3' || ||o|||||||||||| || 3' TATAAATCCTTGCCTCCCTCATATACTATGAT 5' |
1735 | Triticum aestivum | TATGGGACGGAGGGAGTATTT | alignment | plot | GSM911923 | gi|241986678|gb|AK333939.1|AK333939 HTC Triticum aestivum cDNA, clone: WT008_P05, cultivar: Chinese Spring. | 2 | 1801 | 0 | 6 | 3 | 2.5 | 5' TATGGGACGGAGGGAGTATTT 3' || ||o||||||||||||| | 3' ATAAAT-CCTTGCCTCCCTCATATACTATGAT 5' |
1736 | Triticum aestivum | AATTATGGAACGGAGGGAGTG | alignment | plot | GSM911923 | gi|241985433|gb|AK332693.1|AK332693 HTC Triticum aestivum cDNA, clone: WT004_K03, cultivar: Chinese Spring. | 2 | 1140 | 0.02 | 3 | 3 | 2.5 | 5' AATTATGGAACGGAGGGAGTG 3' | ||| ||||||||||||||o 3' TTTATAAAT-CCTTGCCTCCCTCATTTTGCGT 5' |
1737 | Triticum aestivum | TCCCTCCGTTCGGAATTACTT | alignment | plot | GSM911923 | gi|241985433|gb|AK332693.1|AK332693 HTC Triticum aestivum cDNA, clone: WT004_K03, cultivar: Chinese Spring. | 2 | 1273 | 0.03 | 9 | 9 | 2.5 | 5' TCCCTCCGTTCGGAATTACTT 3' |||||||||||o || ||||| 3' GATGAGGGAGGCAAGTATTTATGAACAGAAAG 5' |
1738 | Triticum aestivum | TATTTGTTTACAGAGGGAGTT | alignment | plot | GSM911923 | gi|241990576|gb|AK330733.1|AK330733 HTC Triticum aestivum cDNA, clone: SET5_C19, cultivar: Chinese Spring. | 2 | 2132 | 0 | 3 | 3 | 2 | 5' TATTTGTTTACAGAGGGAGTT 3' |||| ||||||||||||||| 3' GAATATAATCAAATGTCTCCCTCATTATTAAA 5' |
1739 | Triticum aestivum | TTTGTACTCCCTCCGTCCGGA | alignment | plot | GSM911923 | gi|241990576|gb|AK330733.1|AK330733 HTC Triticum aestivum cDNA, clone: SET5_C19, cultivar: Chinese Spring. | 2 | 2171 | 0.04 | 2 | 2 | 3 | 5' TTTGTACTCCCTCCGTCCGGA 3' |||||||||||||||| | | 3' GAGGAAACATGAGGGAGGCATTCATCACTAGA 5' |
1740 | Triticum aestivum | AGAGCAGGTACAATGGCAGGC | alignment | plot | GSM911923 | gi|32128522|gb|BT008971.1|BT008971 PLN Triticum aestivum clone wdk1c.pk023.m3:fis, full insert mRNA sequence. | 1 | 748 | 0 | 22 | 11 | 3 | 5' AGAG-CAGGTACAATGGCAGGC 3' |||| |||||||||o|| |o|| 3' ATCTCTCAGTCCATGTTGCCCTTCGTGGGCTA 5' |
1741 | Triticum aestivum | TGTACTTCCTCCGTCCCAAAA | alignment | plot | GSM911923 | gi|241983674|gb|AK331616.1|AK331616 HTC Triticum aestivum cDNA, clone: WT007_P05, cultivar: Chinese Spring. | 2 | 5251 | 0.01 | 6 | 6 | 2 | 5' TGTACTTCCTCCGTCCCAAAA 3' |o||||o||||||||| |||| 3' TAGTATATGAGGGAGGCAGGCTTTTTCGAACA 5' |
1742 | Triticum aestivum | TGTACTCCCTCCGTTCCTAAA | alignment | plot | GSM911923 | gi|241983674|gb|AK331616.1|AK331616 HTC Triticum aestivum cDNA, clone: WT007_P05, cultivar: Chinese Spring. | 2 | 5251 | 0 | 6 | 6 | 2.5 | 5' TGTACTCCCTCCGTTCCTAAA 3' |o|||||||||||| || ||| 3' TAGTATATGAGGGAGGCA-GGCTTTTTCGAAC 5' |
1743 | Triticum aestivum | ACTACTCCCTCCGTTCCTAAA | alignment | plot | GSM911923 | gi|241983674|gb|AK331616.1|AK331616 HTC Triticum aestivum cDNA, clone: WT007_P05, cultivar: Chinese Spring. | 2 | 5251 | 0.05 | 6 | 6 | 3.5 | 5' ACTACTCCCTCCGTTCCTAAA 3' | ||||||||||||o| ||| 3' AGTAT-ATGAGGGAGGCAGGCTTTTTCGAACA 5' |
1744 | Triticum aestivum | ATAGCATCATCCATCCTACCA | alignment | plot | GSM911923 | gi|241989083|gb|AK336062.1|AK336062 HTC Triticum aestivum cDNA, clone: SET3_C06, cultivar: Chinese Spring. | 0 | 619 | 0.01 | 81 | 81 | 4 | 5' ATAGCATCATCCATC-CTACCA 3' || |||||||||||| | ||| 3' TTTGTAACGTAGTAGGTAGTGTTGGAGGTTTG 5' |
1745 | Triticum aestivum | AATTATGGAACGGAGGGAGTG | alignment | plot | GSM911923 | gi|241986968|gb|AK334229.1|AK334229 HTC Triticum aestivum cDNA, clone: WT009_K22, cultivar: Chinese Spring. | 2 | 1739 | 0.03 | 2 | 2 | 2.5 | 5' AATTATGGAACGGAGGGAGTG 3' | ||| ||||||||||||||o 3' TTCATAAAT-CCTTGCCTCCCTCATATGTAGT 5' |
1746 | Triticum aestivum | ATTATGGAACGGAGGGAGT | alignment | plot | GSM911923 | gi|241986968|gb|AK334229.1|AK334229 HTC Triticum aestivum cDNA, clone: WT009_K22, cultivar: Chinese Spring. | 2 | 1738 | 0 | 3 | 3 | 2 | 5' ATTATGGAACGGAGGGAGT 3' ||| |||||||||||||| 3' TCATAAAT-CCTTGCCTCCCTCATATGTAGTT 5' |
1747 | Triticum aestivum | AATTATGGAACGGAGGGAGTA | alignment | plot | GSM911923 | gi|241983524|gb|AK331464.1|AK331464 HTC Triticum aestivum cDNA, clone: WT007_J01, cultivar: Chinese Spring. | 2 | 1000 | 0.02 | 9 | 9 | 3 | 5' AATTATGGAACGGAGGGAGTA 3' | ||| |||||| |||||||| 3' AATATAAAT-CCTTGCATCCCTCATAAAACGT 5' |
1748 | Triticum aestivum | TGAACTACTCCCTCCGTTCTA | alignment | plot | GSM911923 | gi|241987616|gb|AK334873.1|AK334873 HTC Triticum aestivum cDNA, clone: WT011_F13, cultivar: Chinese Spring. | 2 | 2295 | 0.05 | 4 | 4 | 3.5 | 5' TGAACTACTCCCTCCGTTCTA 3' o||| |||||| |||||o|o| 3' GTTCGCTTTATGAGGTAGGCAGGGTTTTATCG 5' |
1749 | Triticum aestivum | AGATGTACTCCCTCCGTCCGA | alignment | plot | GSM911923 | gi|241990523|gb|AK330680.1|AK330680 HTC Triticum aestivum cDNA, clone: SET1_G09, cultivar: Chinese Spring. | 2 | 562 | 0 | 6 | 6 | 3 | 5' AGAT-GTACTCCCTCCGTCCGA 3' |o|| |||||||||||o|||| 3' TGTTTTATCATGAGGGAGGTAGGCCTTAATGA 5' |
1750 | Triticum aestivum | AGAGTTACTCCCTCCGTCCGG | alignment | plot | GSM911923 | gi|241990523|gb|AK330680.1|AK330680 HTC Triticum aestivum cDNA, clone: SET1_G09, cultivar: Chinese Spring. | 2 | 562 | 0 | 6 | 6 | 2.5 | 5' AGAGTTACTCCCTCCGTCCGG 3' | || ||||||||||o||||| 3' GTTTTATC-ATGAGGGAGGTAGGCCTTAATGA 5' |
1751 | Triticum aestivum | ATAGCATCATCCATCCTACCA | alignment | plot | GSM911923 | gi|241987514|gb|AK334771.1|AK334771 HTC Triticum aestivum cDNA, clone: WT011_A02, cultivar: Chinese Spring. | 0 | 1561 | 0 | 713 | 713 | 4 | 5' ATAGCATCATCCATCCTACCA 3' |||||||||||||| | || 3' CCTGTATCGTAGTAGGTAAGCCGGGTACGACG 5' |
1752 | Triticum aestivum | AAACTTACTTCCTCCGTCCAA | alignment | plot | GSM911923 | gi|241989807|gb|AK330348.1|AK330348 HTC Triticum aestivum cDNA, clone: SET4_D21, cultivar: Chinese Spring. | 0 | 1333 | 0 | 14 | 14 | 4 | 5' AAACTTACTTCCTCCGTCCAA 3' ||||| |||||||| |||| 3' TAGGGTTGAAAGAAGGAGG-AGGTGAGGGGCG 5' |
1753 | Triticum aestivum | GTACTCCCTCCGTCCTAAAAT | alignment | plot | GSM911923 | gi|241983524|gb|AK331464.1|AK331464 HTC Triticum aestivum cDNA, clone: WT007_J01, cultivar: Chinese Spring. | 2 | 1145 | 0 | 2 | 2 | 2.5 | 5' GTACTCCCTCCGTCCTAAAAT 3' o|||||||||||| || |||| 3' TATATATGAGGGAGGCAAGAGTTTATATTCAG 5' |
1754 | Triticum aestivum | ATACTCCCTCCGTCCTCGAAA | alignment | plot | GSM911923 | gi|241983524|gb|AK331464.1|AK331464 HTC Triticum aestivum cDNA, clone: WT007_J01, cultivar: Chinese Spring. | 2 | 1145 | 0 | 2 | 2 | 2 | 5' ATACTCCCTCCGTCCTCGAAA 3' ||||||||||||| ||| ||| 3' TATATATGAGGGAGGCAAGAG-TTTATATTCA 5' |
1755 | Triticum aestivum | TTTTGGGACGGAGGGAGTATC | alignment | plot | GSM911923 | gi|241987650|gb|AK334907.1|AK334907 HTC Triticum aestivum cDNA, clone: WT011_H08, cultivar: Chinese Spring. | 2 | 1775 | 0.02 | 7 | 1.4 | 3 | 5' TTTTGGGACGGAGGGAGTATC 3' ||| ||o||||||||||||o 3' TTATAAATCCTTGCCTCCCTCATGTAGGTATG 5' |
1756 | Triticum aestivum | TACTCCCTCCATCCCAAAATA | alignment | plot | GSM911923 | gi|241990523|gb|AK330680.1|AK330680 HTC Triticum aestivum cDNA, clone: SET1_G09, cultivar: Chinese Spring. | 2 | 557 | 0.05 | 3 | 3 | 3 | 5' TACTCCCTCCATCCCAAAATA 3' |||||||||||||| || || 3' TATCATGAGGGAGGTAGGCCTTAATGAACAGC 5' |
1757 | Triticum aestivum | TCTACTCCCTCCGTTCCTAAA | alignment | plot | GSM911923 | gi|241983639|gb|AK331581.1|AK331581 HTC Triticum aestivum cDNA, clone: SET1_J20, cultivar: Chinese Spring. | 2 | 611 | 0.01 | 2 | 2 | 2.5 | 5' TCTACTCCCTCCGTTCCTAAA 3' |o|||||||||||||| ||| 3' TTGATGGTGAGGGAGGCAAGGTTTTATCTACT 5' |
1758 | Triticum aestivum | CCTACTCCCTCCGTTCCTAAA | alignment | plot | GSM911923 | gi|241983639|gb|AK331581.1|AK331581 HTC Triticum aestivum cDNA, clone: SET1_J20, cultivar: Chinese Spring. | 2 | 611 | 0 | 2 | 2 | 2 | 5' CCTACTCCCTCCGTTCCTAAA 3' || |||||||||||||| ||| 3' TGATGG-TGAGGGAGGCAAGGTTTTATCTACT 5' |
1759 | Triticum aestivum | TTTGGGACGGAGGGAGTACTT | alignment | plot | GSM911923 | gi|74013819|gb|DQ118252.1|DQ118252 PLN Triticum aestivum gibberellin 3-oxidase 2-3 (GA3ox2-3) mRNA, complete cds. | 0 | 1274 | 0 | 3 | 3 | 3.5 | 5' TTTGGGACGGAGGGAGTACTT 3' | || ||||||||o|||| || 3' TATAATACGCTGCCTCCTTCATTAACAAACAT 5' |
1760 | Triticum aestivum | TGAAGCTGCCAGCATGATCTA | alignment | plot | GSM911923 | gi|241987072|gb|AK334329.1|AK334329 HTC Triticum aestivum cDNA, clone: WT009_L17, cultivar: Chinese Spring. | 0 | 3124 | 0 | 22 | 22 | 4 | 5' TGAAGCTGCCAGCATGATCTA 3' ||||||||||| |||||| 3' TTTATGTTCGACGGTCGGACTAGAACGTCCCA 5' |
1761 | Triticum aestivum | TTTTGGGACGGAGGGAGTATT | alignment | plot | GSM911923 | gi|241983524|gb|AK331464.1|AK331464 HTC Triticum aestivum cDNA, clone: WT007_J01, cultivar: Chinese Spring. | 2 | 998 | 0 | 18 | 9 | 2.5 | 5' TTTTGGGACGGAGGGAGTATT 3' ||| ||o||| |||||||||| 3' ATATAAATCCTTGCATCCCTCATAAAACGTCG 5' |
1762 | Triticum aestivum | TTTGGGACGGAGGGAGTACTT | alignment | plot | GSM911923 | gi|32128647|gb|BT009096.1|BT009096 PLN Triticum aestivum clone wkm2c.pk005.g2:fis, full insert mRNA sequence. | 2 | 800 | 0.03 | 2 | 2 | 3 | 5' TTTGGGACGGAGGGAGTACTT 3' |||||o|||||||||||| o 3' CATTAAACCTTGCCTCCCTCATCGTCCTTCGT 5' |
1763 | Triticum aestivum | GGCGCCGACGATGACGGAGGA | alignment | plot | GSM911923 | gi|241985627|gb|AK332888.1|AK332888 HTC Triticum aestivum cDNA, clone: WT005_B24, cultivar: Chinese Spring. | 2 | 364 | 0.04 | 3 | 3 | 2.5 | 5' GGCGCCGACGATGACGGAGGA 3' |||||||||||o||||| || 3' ACTACCGCGGCTGCTGCTGCCACCACTCGGTC 5' |
1764 | Triticum aestivum | TATTATGGGACGGAGGGAGTA | alignment | plot | GSM911923 | gi|32128647|gb|BT009096.1|BT009096 PLN Triticum aestivum clone wkm2c.pk005.g2:fis, full insert mRNA sequence. | 2 | 803 | 0 | 4 | 4 | 2.5 | 5' TATTATGGGACGGAGGGAGTA 3' || | |||o|||||||||||| 3' GCTCATTAAACCTTGCCTCCCTCATCGTCCTT 5' |
1765 | Triticum aestivum | CATTATGGGACGGAGGGAGTA | alignment | plot | GSM911923 | gi|32128647|gb|BT009096.1|BT009096 PLN Triticum aestivum clone wkm2c.pk005.g2:fis, full insert mRNA sequence. | 2 | 803 | 0.01 | 4 | 4 | 2.5 | 5' CATTATGGGACGGAGGGAGTA 3' ||| |||o|||||||||||| 3' CTCATTAA-ACCTTGCCTCCCTCATCGTCCTT 5' |
1766 | Triticum aestivum | AGGATCTTGATGATGCTGCAG | alignment | plot | GSM911923 | gi|241983258|gb|AK331198.1|AK331198 HTC Triticum aestivum cDNA, clone: SET6_M01, cultivar: Chinese Spring. | 0 | 1449 | 0 | 266 | 266 | 3.5 | 5' AGGATCTTGATGATGCTGCAG 3' |o||| |||||||||||| | 3' CCACCCTTAGCACTACTACGACGCCGACGACG 5' |
1767 | Triticum aestivum | TAGCCAAGGATGATTTGCC | alignment | plot | GSM911923 | gi|32129093|gb|BT009542.1|BT009542 PLN Triticum aestivum clone wr1.pk0153.c7:fis, full insert mRNA sequence. | 0 | 777 | 0.01 | 82 | 41 | 2 | 5' TAGCCAAGGATGATTTGCC 3' |||||||||||| ||||| 3' TTATTTCGGTTCCTACTCAACGGACTGGTGTG 5' |
1768 | Triticum aestivum | AATTATGGAACGGAGGGAGTG | alignment | plot | GSM911923 | gi|32129157|gb|BT009606.1|BT009606 PLN Triticum aestivum clone wre1n.pk0091.d5:fis, full insert mRNA sequence. | 2 | 1215 | 0.01 | 2 | 2 | 2.5 | 5' AATTATGGAACGGAGGGAGTG 3' |||| | |||||||||||||o 3' CTCATTAAGA-CTTGCCTCCCTCATCGTGATT 5' |
1769 | Triticum aestivum | GTACTCCCTCCGTCCCATAAT | alignment | plot | GSM911923 | gi|241988536|gb|AK335793.1|AK335793 HTC Triticum aestivum cDNA, clone: WT013_M16, cultivar: Chinese Spring. | 2 | 968 | 0.04 | 2 | 2 | 3.5 | 5' GTACTCCCTCCGTCCCATAAT 3' o|||||||||||| | |||| 3' CATATATGAGGGAGGCAAG-TATTTGTTCACT 5' |
1770 | Triticum aestivum | ATACTCCCTCCGTCCGAAA | alignment | plot | GSM911923 | gi|241988536|gb|AK335793.1|AK335793 HTC Triticum aestivum cDNA, clone: WT013_M16, cultivar: Chinese Spring. | 2 | 968 | 0.02 | 2 | 2 | 2.5 | 5' ATACTCCCTCCGTCCGAAA 3' ||||||||||||| |o || 3' CATATATGAGGGAGGCAAGTATTTGTTCACTG 5' |
1771 | Triticum aestivum | ATACTCCCTCCGTCCCATAAT | alignment | plot | GSM911923 | gi|241988536|gb|AK335793.1|AK335793 HTC Triticum aestivum cDNA, clone: WT013_M16, cultivar: Chinese Spring. | 2 | 968 | 0.01 | 2 | 2 | 3 | 5' ATACTCCCTCCGTCCCATAAT 3' ||||||||||||| |||||| 3' CATATATGAGGGAGGCAAGGTATTTTTCACTG 5' |
1772 | Triticum aestivum | TTTTGGGACGGAGGGAGTATT | alignment | plot | GSM911923 | gi|241986968|gb|AK334229.1|AK334229 HTC Triticum aestivum cDNA, clone: WT009_K22, cultivar: Chinese Spring. | 2 | 1737 | 0.01 | 2 | 2 | 2.5 | 5' TTTTGGGACGGAGGGAGTATT 3' ||| ||o||||||||||||| 3' TCATAAATCCTTGCCTCCCTCATATGTAGTTC 5' |
1773 | Triticum aestivum | TTTTGGAACGGAGGGAGTAGT | alignment | plot | GSM911923 | gi|241986968|gb|AK334229.1|AK334229 HTC Triticum aestivum cDNA, clone: WT009_K22, cultivar: Chinese Spring. | 2 | 1737 | 0 | 2 | 2 | 2 | 5' TTTTGGAACGGAGGGAGTAGT 3' ||| ||||||||||||||| | 3' TCATAAATCCTTGCCTCCCTCAT-ATGTAGTT 5' |
1774 | Triticum aestivum | TTACTCCCTCCGTCCCACAAT | alignment | plot | GSM911923 | gi|241983639|gb|AK331581.1|AK331581 HTC Triticum aestivum cDNA, clone: SET1_J20, cultivar: Chinese Spring. | 2 | 610 | 0.01 | 5 | 5 | 3 | 5' TTACTCCCTCCGTCCCACAAT 3' oo||||||||||| ||| ||| 3' TGATGGTGAGGGAGGCAAGGTTTTATCTACTG 5' |
1775 | Triticum aestivum | TTGTCGCAGAAATGGATGTATCTA | alignment | plot | GSM911924 | gi|241990229|gb|AK330571.1|AK330571 HTC Triticum aestivum cDNA, clone: SET4_M12, cultivar: Chinese Spring. | 2 | 182 | 0 | 3 | 3 | 2.5 | 5' TTGTCGCAGAAATGGATGTATCTA 3' |||||| |||||||o|||||| || 3' AATGAACAGCATCTTTACTTACATAAATTTAC 5' |
1776 | Triticum aestivum | TGCAGTTGCTGTCTCAAGCTT | alignment | plot | GSM911924 | gi|241986856|gb|AK334117.1|AK334117 HTC Triticum aestivum cDNA, clone: WT009_K07, cultivar: Chinese Spring. | 0 | 2844 | 0 | 12 | 12 | 3 | 5' TGCAGTTGCTGTCTCAAGCTT 3' oo| |||||||||||||||| 3' TCAAGTG-CAACGACAGAGTTCGATAACTGGA 5' |
1777 | Triticum aestivum | TATTATGGGACGGAGGGAGTA | alignment | plot | GSM911924 | gi|241987784|gb|AK335041.1|AK335041 HTC Triticum aestivum cDNA, clone: WT011_O10, cultivar: Chinese Spring. | 1 | 1609 | 0 | 4 | 4 | 2.5 | 5' TATTATGGGACGGAGGGAGTA 3' |||| ||o||| ||||||||| 3' GAATATAAAACTCTGGCTCCCTCATGGATGGT 5' |
1778 | Triticum aestivum | TGCATTTGCACCTGCACCT | alignment | plot | GSM911924 | gi|241983148|gb|AK331088.1|AK331088 HTC Triticum aestivum cDNA, clone: SET6_A17, cultivar: Chinese Spring. | 2 | 110 | 0.05 | 5 | 2.5 | 2 | 5' TGCATTTGCACCTGCACCT 3' ||||o|| ||||o|||||| 3' AGCAACGTGAA-GTGGGCGTGGAAGAAGGGGT 5' |
1779 | Triticum aestivum | CGGTTGGGCTGTATGATGGCGA | alignment | plot | GSM911924 | gi|21736|gb|X07780.1|X07780 PLN Wheat mRNA for fructose-1,6-bisphosphatase (EC 3.1.3.11). | 2 | 677 | 0.02 | 6 | 6 | 3 | 5' CGGTTGGGCTGTATGATGGCGA 3' ||| ||||||||| |||| ||| 3' AGCAGCCTACCCGACAT-CTACGGCTTCTACC 5' |
1780 | Triticum aestivum | TTGAGCCGTGCCAATATCACG | alignment | plot | GSM911924 | gi|241986925|gb|AK334186.1|AK334186 HTC Triticum aestivum cDNA, clone: WT009_E16, cultivar: Chinese Spring. | 0 | 1187 | 0 | 1122 | 1122 | 2 | 5' TTGAGCCGTGCCAATATCACG 3' ||||||||o||||||||| |o 3' CACTAACTCGGCGCGGTTATAGAGTGCGCGCG 5' |
1781 | Triticum aestivum | TATTTCTTTACAGAGGGACTA | alignment | plot | GSM911924 | gi|241987307|gb|AK334564.1|AK334564 HTC Triticum aestivum cDNA, clone: WT010_E24, cultivar: Chinese Spring. | 2 | 1925 | 0.02 | 3 | 3 | 3 | 5' TATTTCTTTACAGAGGGACTA 3' o|||||o||||| ||| |||| 3' TTATGTAAAGGAATGTGTCC-TGATATATTAT 5' |
1782 | Triticum aestivum | TCCGGAGGGATTCCCTCCTTG | alignment | plot | GSM911924 | gi|32351003|gb|AY290730.1|AY290730 PLN Triticum aestivum ubiquitin-like mRNA, partial sequence. | 2 | 272 | 0 | 52 | 52 | 2 | 5' TCCGGAGGGATTCCCTCCTTG 3' ||||| ||||| ||||||||| 3' GACCAGGCCGCCCTACGGGAGGAACAGGACCT 5' |
1783 | Triticum aestivum | AACATACTCCCTCCGTCCGGA | alignment | plot | GSM911924 | gi|241986513|gb|AK333774.1|AK333774 HTC Triticum aestivum cDNA, clone: WT008_C24, cultivar: Chinese Spring. | 2 | 1203 | 0.04 | 2 | 2 | 3.5 | 5' AACATACTCCCTCCG-TCCGGA 3' ||||||||||||| | | ||o| 3' GTAGTTGTATGAGGGAGTCTACGCTTTCGAAT 5' |
1784 | Triticum aestivum | TAGCCAAGGATGATTTGCC | alignment | plot | GSM911924 | gi|45861200|gb|AY568297.1|AY568297 PLN Triticum aestivum CCAAT-box transcription factor complex WHAP3 (WHAP3) mRNA, complete cds | 0 | 824 | 0 | 263 | 33.8132 | 2 | 5' TAGCCAAGGATGATTTGCC 3' ||||||||||||||||| 3' TGTATTCGGTTCCTACTAAACGACCCCCGTTT 5' |
1785 | Triticum aestivum | TAGCCAAGGATGATTTGCCT | alignment | plot | GSM911924 | gi|45861200|gb|AY568297.1|AY568297 PLN Triticum aestivum CCAAT-box transcription factor complex WHAP3 (WHAP3) mRNA, complete cds | 0 | 824 | 0 | 263 | 33.8132 | 2 | 5' TAGCCAAGGATGATTTGCCT 3' ||||||||||||||||| | 3' TGTATTCGGTTCCTACTAAACG-ACCCCCGTT 5' |
1786 | Triticum aestivum | TACTTCCTCCGTCCCAAAATA | alignment | plot | GSM911924 | gi|18496064|gb|AJ420778.1|AJ420778 PLN Triticum aestivum partial mRNA for putative fructose 1-,6- biphosphate aldolase (ald gene | 2 | 886 | 0.01 | 16 | 16 | 3 | 5' TACTTCCTCCGTCCCAAAATA 3' ||| | |||||||| |||||| 3' GTCTATG-ATGAGGCAGGTTTTTATTCACAGT 5' |
1787 | Triticum aestivum | AGCCAAGGATGATTTGCCTG | alignment | plot | GSM911924 | gi|45861200|gb|AY568297.1|AY568297 PLN Triticum aestivum CCAAT-box transcription factor complex WHAP3 (WHAP3) mRNA, complete cds | 2 | 823 | 0 | 3 | 0.230769 | 1 | 5' AGCCAAGGATGATTTGCCTG 3' ||||||||||||||||| || 3' GTATTCGGTTCCTACTAAACG-ACCCCCGTTT 5' |
1788 | Triticum aestivum | CTCCGTCCCAAAATATAAGAA | alignment | plot | GSM911924 | gi|241985236|gb|AK332496.1|AK332496 HTC Triticum aestivum cDNA, clone: WT004_B23, cultivar: Chinese Spring. | 2 | 2753 | 0.03 | 18 | 18 | 2.5 | 5' CTCCGTCCCAAAATATAAGAA 3' |||||o|||| ||||||||| 3' GAGAGAGGCGGGGTATTATATTCTCGTAAAAA 5' |
1789 | Triticum aestivum | TAGCCAAGGATGATTTGCC | alignment | plot | GSM911924 | gi|32129063|gb|BT009512.1|BT009512 PLN Triticum aestivum clone wr1.pk0094.f2:fis, full insert mRNA sequence. | 2 | 658 | 0 | 263 | 33.8132 | 1 | 5' TAGCCAAGGATGATTTGCC 3' |||||||||||||||||| 3' TGTATTCGGTTCCTACTAAACGGTCCCCCGTT 5' |
1790 | Triticum aestivum | ACTCCCTCCGTTCCATAATGT | alignment | plot | GSM911924 | gi|32129089|gb|BT009538.1|BT009538 PLN Triticum aestivum clone wr1.pk0144.b10:fis, full insert mRNA sequence. | 2 | 2416 | 0.01 | 2 | 2 | 2.5 | 5' ACTCCCTCCGTTCCATAATGT 3' |||||||||||||| |||o| 3' TTCCTGAGGGAGGCAAGGATTTATATTTACGT 5' |
1791 | Triticum aestivum | TGATTGAGCCGTGCCAATAT | alignment | plot | GSM911924 | gi|241986925|gb|AK334186.1|AK334186 HTC Triticum aestivum cDNA, clone: WT009_E16, cultivar: Chinese Spring. | 2 | 1190 | 0 | 414 | 414 | 0.5 | 5' TGATTGAGCCGTGCCAATAT 3' |||||||||||o|||||||| 3' GACCACTAACTCGGCGCGGTTATAGAGTGCGC 5' |
1792 | Triticum aestivum | TCCGGAGGGATTCCCTCCTTG | alignment | plot | GSM911924 | gi|155965253|gb|EU081898.1|EU081898 PLN Triticum aestivum polyubiquitin (WubiG) mRNA, partial cds. | 2 | 1123 | 0.02 | 247 | 49.4 | 2.5 | 5' TCCGGAGGGATTCCCTCCTTG 3' ||||| ||o|| ||||||||| 3' GACCAGGCCCCCTTACGGGAGGAACAGGACCT 5' |
1793 | Triticum aestivum | AGAGCAGGTACAATGGCAGGC | alignment | plot | GSM911924 | gi|241983718|gb|AK331660.1|AK331660 HTC Triticum aestivum cDNA, clone: WT002_A21, cultivar: Chinese Spring. | 2 | 812 | 0.01 | 29 | 14.5 | 2.5 | 5' AGAG-CAGGTACAATGGCAGGC 3' |||| |||||||||||| |o|| 3' ATCTCTCAGTCCATGTTACCCTTCGTGGGCTA 5' |
1794 | Triticum aestivum | TCCGGAGGGATTCCCTCCTTG | alignment | plot | GSM911924 | gi|155965253|gb|EU081898.1|EU081898 PLN Triticum aestivum polyubiquitin (WubiG) mRNA, partial cds. | 2 | 895 | 0 | 247 | 49.4 | 2.5 | 5' TCCGGAGGGATTCCCTCCTTG 3' ||||| ||o|| ||||||||| 3' GACCAGGCCCCCTTACGGGAGGAACAGGACCT 5' |
1795 | Triticum aestivum | TAGCCAAGGATGATTTGCC | alignment | plot | GSM911924 | gi|45861204|gb|AY568299.1|AY568299 PLN Triticum aestivum CCAAT-box transcription factor complex WHAP5 (WHAP5) mRNA, complete cds | 0 | 823 | 0 | 263 | 33.8132 | 1 | 5' TAGCCAAGGATGATTTGCC 3' |||||||||||||||||| 3' TGTATTCGGTTCCTACTAAACGGCCCCCGTTT 5' |
1796 | Triticum aestivum | AGCCAAGGATGATTTGCCTG | alignment | plot | GSM911924 | gi|45861204|gb|AY568299.1|AY568299 PLN Triticum aestivum CCAAT-box transcription factor complex WHAP5 (WHAP5) mRNA, complete cds | 2 | 822 | 0 | 3 | 0.230769 | 1 | 5' AGCCAAGGATGATTTGCCTG 3' |||||||||||||||||| | 3' GTATTCGGTTCCTACTAAACGGCCCCCGTTTC 5' |
1797 | Triticum aestivum | ATGTGTCACTGAAATGTGGGC | alignment | plot | GSM911924 | gi|241983873|gb|AK331815.1|AK331815 HTC Triticum aestivum cDNA, clone: WT002_G20, cultivar: Chinese Spring. | 0 | 2096 | 0 | 28 | 28 | 4 | 5' ATGTGTCACTGAAATGTGGGC 3' | |||||||||| |oo||oo| 3' ATTGT-CACAGTGACTCTGTACTTGTTCTTTC 5' |
1798 | Triticum aestivum | TAGCCAAGGATGATTTGCC | alignment | plot | GSM911924 | gi|45861218|gb|AY568306.1|AY568306 PLN Triticum aestivum CCAAT-box transcription factor complex WHAP12 (WHAP12) mRNA, complete c | 0 | 818 | 0 | 177 | 24.3846 | 1 | 5' TAGCCAAGGATGATTTGCC 3' |||||||||||||||||| 3' TGTATTCGGTTCCTACTAAACGGTCCCCCGTT 5' |
1799 | Triticum aestivum | AGAATCCTGATGATGCTGCAG | alignment | plot | GSM911924 | gi|52854305|gb|AY645945.1|AY645945 PLN Triticum aestivum floral homeotic protein (Q) mRNA, complete cds. | 2 | 1374 | 0 | 12 | 6 | 0.5 | 5' AGAATCCTGATGATGCTGCAG 3' |o||||||||||||||||||| 3' CATCTTTTAGGACTACTACGACGTCGCATTTC 5' |
1800 | Triticum aestivum | TCCACAGGCTTTCTTGAACTG | alignment | plot | GSM911924 | gi|241986105|gb|AK333366.1|AK333366 HTC Triticum aestivum cDNA, clone: WT006_E19, cultivar: Chinese Spring. | 0 | 631 | 0.01 | 120 | 120 | 3.5 | 5' TCCACAGGCTTTCTTGAACTG 3' ||||||o|||| ||||| || 3' GAGGAGGTGTTCGAA-GAACTCGAGTGGTTAG 5' |
1801 | Triticum aestivum | CTCCGTCCCAAAATATAAGAA | alignment | plot | GSM911924 | gi|241986094|gb|AK333355.1|AK333355 HTC Triticum aestivum cDNA, clone: WT006_E09, cultivar: Chinese Spring. | 2 | 825 | 0.02 | 2 | 2 | 3 | 5' CTCCGTCCCAAAATATAAGAA 3' ||| |||||| ||||||||| 3' GAGAGAGACAGGGTATTATATTCTCGTAAAAA 5' |
1802 | Triticum aestivum | AGCCAAGGATGATTTGCCTG | alignment | plot | GSM911924 | gi|45861218|gb|AY568306.1|AY568306 PLN Triticum aestivum CCAAT-box transcription factor complex WHAP12 (WHAP12) mRNA, complete c | 2 | 817 | 0 | 3 | 0.230769 | 1 | 5' AGCCAAGGATGATTTGCCTG 3' |||||||||||||||||| | 3' GTATTCGGTTCCTACTAAACGGTCCCCCGTTT 5' |
1803 | Triticum aestivum | GCTCCCTCCGTCCCATAATAT | alignment | plot | GSM911924 | gi|32128860|gb|BT009309.1|BT009309 PLN Triticum aestivum clone wlm1.pk0020.e5:fis, full insert mRNA sequence. | 2 | 295 | 0.02 | 2 | 1 | 3 | 5' GCTCCCTCCGTCCCATAATAT 3' |||||||||| |||||| || 3' GTATAGAGGGAGGCACGGTATTCTAGCTACTT 5' |
1804 | Triticum aestivum | GCCTGGCTCCCTGTATGCC | alignment | plot | GSM911924 | gi|241983915|gb|AK331857.1|AK331857 HTC Triticum aestivum cDNA, clone: WT002_I17, cultivar: Chinese Spring. | 0 | 1088 | 0 | 89 | 89 | 2.5 | 5' GCCTGGCTCCCTGTATGCC 3' |||||o|| | |||||||| 3' GGTCCGGACTGA-GTACATACGGAAGGGAAAG 5' |
1805 | Triticum aestivum | TATTATGGGACGGAGGGAGTA | alignment | plot | GSM911924 | gi|241985236|gb|AK332496.1|AK332496 HTC Triticum aestivum cDNA, clone: WT004_B23, cultivar: Chinese Spring. | 2 | 2706 | 0 | 5 | 5 | 0.5 | 5' TATTATGGGACGGAGGGAGTA 3' |||||||||||o||||||||| 3' GAATATAATACCCTGTCTCCCTCATGTATACT 5' |
1806 | Triticum aestivum | TAGCCAAGGATGATTTGCC | alignment | plot | GSM911924 | gi|32128487|gb|BT008936.1|BT008936 PLN Triticum aestivum clone wdi1c.pk002.b10:fis, full insert mRNA sequence. | 0 | 947 | 0 | 148 | 74 | 2 | 5' TAGCCAAGGATGATTTGCC 3' |||||||||||| ||||| 3' TTATTTCGGTTCCTACTCAACGGTCTGGTGTG 5' |
1807 | Triticum aestivum | CCGGACCAGGCTTCATTCCCA | alignment | plot | GSM911924 | gi|241983944|gb|AK331886.1|AK331886 HTC Triticum aestivum cDNA, clone: WT002_J20, cultivar: Chinese Spring. | 0 | 964 | 0 | 3115 | 3115 | 1 | 5' CCGGACCAGGCTTCATTCCCA 3' |||||||||||||||| |||| 3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAGC 5' |
1808 | Triticum aestivum | TAGCCAAGGATGATTTGCC | alignment | plot | GSM911924 | gi|32128614|gb|BT009063.1|BT009063 PLN Triticum aestivum clone wds1f.pk002.p21:fis, full insert mRNA sequence. | 0 | 1145 | 0 | 818 | 818 | 1.5 | 5' TAGCCAAGGATGATTTGCC 3' |||||||o|||||||||| 3' TCATCTCGGTTCTTACTAAACGGACGTCTGTT 5' |
1809 | Triticum aestivum | AGCCAAGGATGATTTGCCTG | alignment | plot | GSM911924 | gi|32128614|gb|BT009063.1|BT009063 PLN Triticum aestivum clone wds1f.pk002.p21:fis, full insert mRNA sequence. | 2 | 1144 | 0 | 2 | 2 | 0.5 | 5' AGCCAAGGATGATTTGCCTG 3' |||||||o|||||||||||| 3' CATCTCGGTTCTTACTAAACGGACGTCTGTTG 5' |
1810 | Triticum aestivum | TTGTCGCAGAAATGGATGTATCTA | alignment | plot | GSM911924 | gi|241985618|gb|AK332879.1|AK332879 HTC Triticum aestivum cDNA, clone: WT005_B16, cultivar: Chinese Spring. | 2 | 685 | 0.04 | 20 | 20 | 4 | 5' TTGTCGCAGAAATGGATGTATCTA 3' |||| ||||| | o||||||||o| 3' TAGTAACAACGTCTGTTTCTACATAGGTGGTT 5' |
1811 | Triticum aestivum | TTGTCGCAGGTATGGGTGTAT | alignment | plot | GSM911924 | gi|241983270|gb|AK331210.1|AK331210 HTC Triticum aestivum cDNA, clone: SET6_M12, cultivar: Chinese Spring. | 2 | 525 | 0.05 | 8 | 4 | 3 | 5' TTGTCGCAGGTATGGGTGTAT 3' o||||||||| ||||o|| || 3' AAATGACAGCGTCCCTACCTACTTACGAGTAT 5' |
1812 | Triticum aestivum | TATATTTTGGGACGGAGGGAG | alignment | plot | GSM911924 | gi|241989722|gb|AK330263.1|AK330263 HTC Triticum aestivum cDNA, clone: SET4_A13, cultivar: Chinese Spring. | 2 | 3330 | 0 | 6 | 6 | 2.5 | 5' TATATTTTGGGACGGAGGGAG 3' ||||||| ||o||||||| || 3' CTGAATATAAATCCTTGCCTCCGTCATCTTTC 5' |
1813 | Triticum aestivum | AATTATGGAACGGAGGGAGTA | alignment | plot | GSM911924 | gi|241989722|gb|AK330263.1|AK330263 HTC Triticum aestivum cDNA, clone: SET4_A13, cultivar: Chinese Spring. | 2 | 3328 | 0.02 | 22 | 22 | 3 | 5' AATTATGGAACGGAGGGAGTA 3' | ||| |||||||||| |||| 3' AATATAAAT-CCTTGCCTCCGTCATCTTTCGT 5' |
1814 | Triticum aestivum | TCCGGAGGGATTCCCTCCTTG | alignment | plot | GSM911924 | gi|33325639|gb|AF517839.1|AF517839 PLN Triticum aestivum ubiquitin protein mRNA, partial cds. | 2 | 107 | 0 | 102 | 102 | 2 | 5' TCCGGAGGGATTCCCTCCTTG 3' ||||| ||||| ||||||||| 3' GACCAGGCCCCCCTACGGGAGGAACAGGACCT 5' |
1815 | Triticum aestivum | TAGCCAAGGATGATTTGCC | alignment | plot | GSM911924 | gi|32129145|gb|BT009594.1|BT009594 PLN Triticum aestivum clone wre1n.pk0066.e4:fis, full insert mRNA sequence. | 0 | 906 | 0 | 243 | 121.5 | 2 | 5' TAGCCAAGGATGATTTGCC 3' |||||||||||| ||||| 3' AGTATTCGGTTCCTACTTAACGGTGGCCGTCG 5' |
1816 | Triticum aestivum | AATTATGGAACGGAGGGAGTG | alignment | plot | GSM911924 | gi|241988219|gb|AK335477.1|AK335477 HTC Triticum aestivum cDNA, clone: WT012_P23, cultivar: Chinese Spring. | 2 | 931 | 0.04 | 10 | 3.66667 | 3 | 5' AATTATGGAACGGAGGGAGTG 3' | ||| ||||||||||o|||o 3' TTTATAAAT-CCTTGCCTCCTTCATATACAAT 5' |
1817 | Triticum aestivum | GTTACTCCCTCCGTTCCTAAA | alignment | plot | GSM911924 | gi|241988323|gb|AK335581.1|AK335581 HTC Triticum aestivum cDNA, clone: WT013_E07, cultivar: Chinese Spring. | 2 | 1362 | 0.05 | 2 | 2 | 3.5 | 5' GTTACTCCCTCCGTTCCTAAA 3' | ||||||||||||o| ||| 3' GAAACCATGAGGGAGGCAGGCCTTTATGAACA 5' |
1818 | Triticum aestivum | TATTTGTTTACAGAGGGAGTT | alignment | plot | GSM911924 | gi|14571548|gb|AY036610.1|AY036610 PLN Triticum aestivum beclin1-like protein mRNA, complete cds. | 2 | 1853 | 0 | 2 | 1 | 2 | 5' TATTTGTTTACAGAGGGAGTT 3' ||||| |||||||||||||| 3' CTAGATAAAGAAATGTCTCCCTCATGTATAAT 5' |
1819 | Triticum aestivum | TTTGGGACGGAGGGAGTACTA | alignment | plot | GSM911924 | gi|241988219|gb|AK335477.1|AK335477 HTC Triticum aestivum cDNA, clone: WT012_P23, cultivar: Chinese Spring. | 2 | 928 | 0.03 | 12 | 2.4 | 3 | 5' TTTGGGACGGAGGGAGTACTA 3' || ||o|||||||o|||| || 3' TATAAATCCTTGCCTCCTTCAT-ATACAATTA 5' |
1820 | Triticum aestivum | TTTGGGACGGAGGGAGTACAT | alignment | plot | GSM911924 | gi|241988219|gb|AK335477.1|AK335477 HTC Triticum aestivum cDNA, clone: WT012_P23, cultivar: Chinese Spring. | 2 | 928 | 0.02 | 12 | 2.4 | 3 | 5' TTTGGGACGGAGGGAGTACAT 3' || ||o|||||||o|||| || 3' TATAAATCCTTGCCTCCTTCATATACAATTAC 5' |
1821 | Triticum aestivum | TATGGGACGGAGGGAGTATTT | alignment | plot | GSM911924 | gi|241988219|gb|AK335477.1|AK335477 HTC Triticum aestivum cDNA, clone: WT012_P23, cultivar: Chinese Spring. | 2 | 928 | 0.03 | 12 | 2.4 | 3 | 5' TATGGGACGGAGGGAGTATTT 3' || ||o|||||||o||||| | 3' ATAAAT-CCTTGCCTCCTTCATATACAATTAC 5' |
1822 | Triticum aestivum | TATTATGGGACGGAGGGAGTA | alignment | plot | GSM911924 | gi|241986916|gb|AK334177.1|AK334177 HTC Triticum aestivum cDNA, clone: WT009_C24, cultivar: Chinese Spring. | 2 | 3285 | 0 | 2 | 2 | 1.5 | 5' TATTATGGGACGGAGGGAGTA 3' |||||||| ||o||||||||| 3' GTTTATAATACCATGTCTCCCTCATAGAAGAT 5' |
1823 | Triticum aestivum | TTTTGGAACGGAGGGAGTA | alignment | plot | GSM911924 | gi|241989722|gb|AK330263.1|AK330263 HTC Triticum aestivum cDNA, clone: SET4_A13, cultivar: Chinese Spring. | 2 | 3326 | 0.03 | 52 | 26 | 2 | 5' TTTTGGAACGGAGGGAGTA 3' ||| |||||||||| |||| 3' ATATAAATCCTTGCCTCCGTCATCTTTCGTGG 5' |
1824 | Triticum aestivum | ATTATGGGGCGGAGGGAGT | alignment | plot | GSM911924 | gi|241990850|gb|AK331006.1|AK331006 HTC Triticum aestivum cDNA, clone: SET5_N13, cultivar: Chinese Spring. | 2 | 2139 | 0.02 | 4 | 4 | 2.5 | 5' ATTATGGGGCGGAGGGAGT 3' |||||||| |||||o ||| 3' AATGTAATACCCGGCCTCTATCATGAACTCTT 5' |
1825 | Triticum aestivum | CACTATATTTTGGAATGGAGGGA | alignment | plot | GSM911924 | gi|241989266|gb|AK336244.1|AK336244 HTC Triticum aestivum cDNA, clone: SET3_J09, cultivar: Chinese Spring. | 2 | 1038 | 0.01 | 2 | 2 | 3 | 5' CACTATATTTTGGAATGGAGGGA 3' |||| ||||||||| oo|||||| 3' TGCTGTGA-ATAAAACCTGGTCTCCCTCATTA 5' |
1826 | Triticum aestivum | ATAGCATCATCCATCCTACCA | alignment | plot | GSM911924 | gi|241983466|gb|AK331406.1|AK331406 HTC Triticum aestivum cDNA, clone: WT007_G17, cultivar: Chinese Spring. | 0 | 858 | 0 | 5 | 5 | 3 | 5' ATAGCATCATCCATCCTACCA 3' |||||||||||| |||||| 3' CCGGGATCGTAGTAGGTCGGATGGGTTCGAGC 5' |
1827 | Triticum aestivum | ACATTGTGGGACGGAGGGAGT | alignment | plot | GSM911924 | gi|241990850|gb|AK331006.1|AK331006 HTC Triticum aestivum cDNA, clone: SET5_N13, cultivar: Chinese Spring. | 2 | 2141 | 0.04 | 2 | 2 | 3 | 5' ACATTGTGGGACGGAGGGAGT 3' |||||o|||| |||||o ||| 3' AGAATGTAATACCCGGCCTCTATCATGAACTC 5' |
1828 | Triticum aestivum | TCCACAGGCTTTCTTGAACTG | alignment | plot | GSM911924 | gi|241990635|gb|AK330792.1|AK330792 HTC Triticum aestivum cDNA, clone: SET5_F03, cultivar: Chinese Spring. | 0 | 659 | 0 | 430 | 430 | 1 | 5' TCCACAGGCTTTCTTGAACTG 3' ||||||||||||||||||| | 3' GCAAAGGTGTCCGAAAGAACTTGCCAACGCCG 5' |
1829 | Triticum aestivum | TTTTGGGACGGAGGGAGTATT | alignment | plot | GSM911924 | gi|241988462|gb|AK335720.1|AK335720 HTC Triticum aestivum cDNA, clone: WT013_J19, cultivar: Chinese Spring. | 2 | 3336 | 0.02 | 2 | 2 | 2.5 | 5' TTTTGGGACGGAGGGAGTATT 3' |||| ||||||||||||||o 3' TCATAAAAGCCTGCCTCCCTCATGTTTGAAAA 5' |
1830 | Triticum aestivum | TTTTGGAACGGAGGGAGTA | alignment | plot | GSM911924 | gi|241988462|gb|AK335720.1|AK335720 HTC Triticum aestivum cDNA, clone: WT013_J19, cultivar: Chinese Spring. | 2 | 3336 | 0 | 2 | 2 | 1.5 | 5' TTTTGGAACGGAGGGAGTA 3' |||o|| |||||||||||| 3' CATAAAAGCC-TGCCTCCCTCATGTTTGAAAA 5' |
1831 | Triticum aestivum | TTTGGGACGGAGGGAGTACTT | alignment | plot | GSM911924 | gi|241986137|gb|AK333398.1|AK333398 HTC Triticum aestivum cDNA, clone: WT006_G02, cultivar: Chinese Spring. | 2 | 2646 | 0 | 4 | 4 | 2.5 | 5' TTTGGGACGGAGGGAGTACTT 3' ||||||||||||| |o||| | 3' CTTAAAACCCTGCCTCCATTATGTAATGTAAT 5' |
1832 | Triticum aestivum | TTTTGGGACGGAGGGAGTATT | alignment | plot | GSM911924 | gi|241988219|gb|AK335477.1|AK335477 HTC Triticum aestivum cDNA, clone: WT012_P23, cultivar: Chinese Spring. | 2 | 929 | 0.03 | 31 | 6.5 | 3 | 5' TTTTGGGACGGAGGGAGTATT 3' ||| ||o|||||||o||||| 3' TTATAAATCCTTGCCTCCTTCATATACAATTA 5' |
1833 | Triticum aestivum | TTTTGGAACGGAGGGAGTAGT | alignment | plot | GSM911924 | gi|241988219|gb|AK335477.1|AK335477 HTC Triticum aestivum cDNA, clone: WT012_P23, cultivar: Chinese Spring. | 2 | 929 | 0.01 | 31 | 6.5 | 2.5 | 5' TTTTGGAACGGAGGGAGTAGT 3' ||| ||||||||||o|||| | 3' TTATAAATCCTTGCCTCCTTCAT-ATACAATT 5' |
1834 | Triticum aestivum | CCGGACCAGGCTTCATTCCCA | alignment | plot | GSM911924 | gi|241987680|gb|AK334937.1|AK334937 HTC Triticum aestivum cDNA, clone: WT011_I24, cultivar: Chinese Spring. | 0 | 789 | 0 | 473 | 473 | 0 | 5' CCGGACCAGGCTTCATTCCCA 3' ||||||||||||||||||||| 3' CTTAGGCCTGGTCCGAAGTAAGGGTAGTAAAC 5' |
1835 | Triticum aestivum | TTTTGGTACAGAGGGAGTATT | alignment | plot | GSM911924 | gi|241983592|gb|AK331534.1|AK331534 HTC Triticum aestivum cDNA, clone: WT007_L23, cultivar: Chinese Spring. | 2 | 462 | 0.01 | 2 | 2 | 2.5 | 5' TTTTGGTACAGAGGGAGTATT 3' |||||| |||||oo||||||o 3' GAGGAAAACCTTGTCTTTCTCATAGAGACTTA 5' |
1836 | Triticum aestivum | TTTTGGGACAGAGGGAGTAGT | alignment | plot | GSM911924 | gi|241983592|gb|AK331534.1|AK331534 HTC Triticum aestivum cDNA, clone: WT007_L23, cultivar: Chinese Spring. | 2 | 462 | 0.01 | 2 | 2 | 2.5 | 5' TTTTGGGACAGAGGGAGTAGT 3' ||||||o|||||oo||||| | 3' GAGGAAAACCTTGTCTTTCTCAT-AGAGACTT 5' |
1837 | Triticum aestivum | GTACTCCCTCCGTCCTAAAAT | alignment | plot | GSM911924 | gi|241985579|gb|AK332840.1|AK332840 HTC Triticum aestivum cDNA, clone: WT005_A03, cultivar: Chinese Spring. | 2 | 1698 | 0.02 | 2 | 2 | 3 | 5' GTACTCCCTCCGTCCTAAAAT 3' |||||||||||o| |o||| | 3' GAAACATGAGGGAGGTAAGGTTTCAATCATAT 5' |
1838 | Triticum aestivum | TTTTGGGACGGAGGGAGTATT | alignment | plot | GSM911924 | gi|241986137|gb|AK333398.1|AK333398 HTC Triticum aestivum cDNA, clone: WT006_G02, cultivar: Chinese Spring. | 2 | 2647 | 0 | 6 | 6 | 3 | 5' TTTTGGGACGGAGGGAGTATT 3' |||||||||||||| |o||o 3' TCTTAAAACCCTGCCTCCATTATGTAATGTAA 5' |
1839 | Triticum aestivum | TTGGAGTGAAGGGAGCTCCA | alignment | plot | GSM911924 | gi|241989307|gb|AK336285.1|AK336285 HTC Triticum aestivum cDNA, clone: SET3_K24, cultivar: Chinese Spring. | 0 | 861 | 0.01 | 11 | 11 | 4 | 5' TTGGAGTGAAGGGAGCTCCA 3' ||||| ||||| | ||||| 3' CCACAACCTGACTTCACACGAGGACAGCTTCC 5' |
1840 | Triticum aestivum | TTGGACTGAAGGGAGCTCCCT | alignment | plot | GSM911924 | gi|241989307|gb|AK336285.1|AK336285 HTC Triticum aestivum cDNA, clone: SET3_K24, cultivar: Chinese Spring. | 0 | 861 | 0 | 11 | 11 | 3 | 5' TTGGACTGAAGGGAGCTCCCT 3' ||||||||||| | ||||| | 3' CCACAACCTGACTTCACACGAGG-ACAGCTTC 5' |
1841 | Triticum aestivum | TGCGACAAGTAATTCCGAACGGA | alignment | plot | GSM911924 | gi|42391852|gb|AB161682.1|AB161682 PLN Triticum aestivum WCSP2 mRNA for cold shock domain protein 2, complete cds. | 2 | 878 | 0.03 | 26 | 13 | 4 | 5' TGCGACAAG-TAATTCCGAACGGA 3' oo||||||| |||o| ||||||o| 3' GCTGTGCTGTTCTATTGAAGCTTGCTTGTTAT 5' |
1842 | Triticum aestivum | GATACTCCCTCCGTTCCTAAA | alignment | plot | GSM911924 | gi|241986835|gb|AK334096.1|AK334096 HTC Triticum aestivum cDNA, clone: WT009_G11, cultivar: Chinese Spring. | 1 | 1059 | 0 | 4 | 4 | 4 | 5' GATACTCCCTCCGTTCCTAAA 3' || | ||||||| ||| |||| 3' ATGTCTCT-AGGGAGGAAAGTATTTAAAAGAA 5' |
1843 | Triticum aestivum | TCCGGAGGGATTCCCTCCTTG | alignment | plot | GSM911924 | gi|21815|gb|X56803.1|X56803 PLN T.aestivum L. mRNA for ubiquitin. | 2 | 109 | 0.02 | 31 | 7.75 | 2.5 | 5' TCCGGAGGGATTCCCTCCTTG 3' ||||| ||o|| ||||||||| 3' GACCAGGCCCCCTTACGGGAGGAACAGGACCT 5' |
1844 | Triticum aestivum | AATTATGGAACGGAGGGAGTA | alignment | plot | GSM911924 | gi|32128877|gb|BT009326.1|BT009326 PLN Triticum aestivum clone wlm24.pk0016.f9:fis, full insert mRNA sequence. | 2 | 1880 | 0.03 | 10 | 3.66667 | 3 | 5' AATTATGGAACGGAGGGAGTA 3' | ||| |||||||| |||||| 3' TTTATAAAT-CCTTGCCTACCTCATGATGTCT 5' |
1845 | Triticum aestivum | ATTATGGGGCGGAGGGAGT | alignment | plot | GSM911924 | gi|241987774|gb|AK335031.1|AK335031 HTC Triticum aestivum cDNA, clone: WT011_N19, cultivar: Chinese Spring. | 2 | 2869 | 0 | 2 | 2 | 1.5 | 5' ATTATGGGGCGGAGGGAGT 3' ||| ||||o|||||||||| 3' TGAATAAAACCCTGCCTCCCTCATGATGTATG 5' |
1846 | Triticum aestivum | ATTTGGAACGGAGGGAGTACA | alignment | plot | GSM911924 | gi|241988553|gb|AK335810.1|AK335810 HTC Triticum aestivum cDNA, clone: WT013_N07, cultivar: Chinese Spring. | 2 | 620 | 0.01 | 3 | 3 | 3 | 5' ATTTGGAACGGAGGGAGTACA 3' |o|||||| |||||| o|||| 3' ACGCTGAACCTTCCCTCCCGTATGTAAGGTCG 5' |
1847 | Triticum aestivum | TTTGGGACGGAGGGAGTACTA | alignment | plot | GSM911924 | gi|32128877|gb|BT009326.1|BT009326 PLN Triticum aestivum clone wlm24.pk0016.f9:fis, full insert mRNA sequence. | 2 | 1877 | 0.01 | 12 | 2.4 | 2.5 | 5' TTTGGGACGGAGGGAGTACTA 3' || ||o||||| ||||||||| 3' TATAAATCCTTGCCTACCTCATGATGTCTGAC 5' |
1848 | Triticum aestivum | TTTGGGACGGAGGGAGTACTT | alignment | plot | GSM911924 | gi|241985579|gb|AK332840.1|AK332840 HTC Triticum aestivum cDNA, clone: WT005_A03, cultivar: Chinese Spring. | 2 | 1654 | 0 | 9 | 4.5 | 1.5 | 5' TTTGGGACGGAGGGAGTACTT 3' |||||o|||||||||||| || 3' GATAAAACCTTGCCTCCCTCATCAATAGTCCC 5' |
1849 | Triticum aestivum | CACTATATTTTGGAATGGAGGGA | alignment | plot | GSM911924 | gi|241989190|gb|AK336169.1|AK336169 HTC Triticum aestivum cDNA, clone: SET3_G10, cultivar: Chinese Spring. | 2 | 1859 | 0 | 2 | 2 | 2.5 | 5' CACTATATTTTGGAATGGAGGGA 3' || | ||||||o||||||||||| 3' CTCAGT-AGATAAAATCTTACCTCCCTCATGT 5' |
1850 | Triticum aestivum | CTCCGTCCCAAAATATAAGAA | alignment | plot | GSM911924 | gi|241989169|gb|AK336148.1|AK336148 HTC Triticum aestivum cDNA, clone: SET3_F15, cultivar: Chinese Spring. | 2 | 1206 | 0 | 2 | 2 | 0.5 | 5' CTCCGTCCCAAAATATAAGAA 3' ||||o|||||||||||||||| 3' GAGGGAGGTAGGGTTTTATATTCTTACAAAAA 5' |
1851 | Triticum aestivum | ACTCCCTCCATCCCATAATAT | alignment | plot | GSM911924 | gi|241989169|gb|AK336148.1|AK336148 HTC Triticum aestivum cDNA, clone: SET3_F15, cultivar: Chinese Spring. | 2 | 1211 | 0 | 2 | 2 | 1 | 5' ACTCCCTCCATCCCATAATAT 3' ||||||||||||||| ||||| 3' ATTATGAGGGAGGTAGGGTTTTATATTCTTAC 5' |
1852 | Triticum aestivum | TTTGGGACGGAGGGAGTACTA | alignment | plot | GSM911924 | gi|32129003|gb|BT009452.1|BT009452 PLN Triticum aestivum clone wlmk8.pk0022.f7:fis, full insert mRNA sequence. | 2 | 791 | 0 | 12 | 2.4 | 2.5 | 5' TTTGGGACGGAGGGAGTACTA 3' || ||o|||||||||||| || 3' TATAAATCCTTGCCTCCCTCATCATCTATCTC 5' |
1853 | Triticum aestivum | TATGGGACGGAGGGAGTAGTA | alignment | plot | GSM911924 | gi|32129003|gb|BT009452.1|BT009452 PLN Triticum aestivum clone wlmk8.pk0022.f7:fis, full insert mRNA sequence. | 2 | 791 | 0 | 12 | 2.4 | 1.5 | 5' TATGGGACGGAGGGAGTAGTA 3' || ||o||||||||||||||| 3' ATAAAT-CCTTGCCTCCCTCATCATCTATCTC 5' |
1854 | Triticum aestivum | TATTATGGGACGGAGGGAGTA | alignment | plot | GSM911924 | gi|241989169|gb|AK336148.1|AK336148 HTC Triticum aestivum cDNA, clone: SET3_F15, cultivar: Chinese Spring. | 2 | 1148 | 0 | 6 | 3 | 1 | 5' TATTATGGGACGGAGGGAGTA 3' |||| |||||||||||||||| 3' GAATATAAAACCCTGCCTCCCTCATGTTATGT 5' |
1855 | Triticum aestivum | AACATACTCCCTCCGTCCGGA | alignment | plot | GSM911924 | gi|1754996|gb|U48690.1|U48690 PLN Triticum aestivum calmodulin TaCaM2-1 mRNA, complete cds. | 2 | 958 | 0.01 | 2 | 1 | 3 | 5' AACATACTCCCTCCGT-CCGGA 3' ||||||||||||||o| ||o | 3' GATGTTGTATGAGGGAGGTAAGGTATTACATC 5' |
1856 | Triticum aestivum | ACCTGCTCCCTCCGTCCCATA | alignment | plot | GSM911924 | gi|1754996|gb|U48690.1|U48690 PLN Triticum aestivum calmodulin TaCaM2-1 mRNA, complete cds. | 2 | 957 | 0.02 | 5 | 2.5 | 3 | 5' ACCTGCTCCCTCCGTCCCATA 3' || |o||||||||o| ||||| 3' ATGTTGTATGAGGGAGGTAAGGTATTACATCA 5' |
1857 | Triticum aestivum | TTTTGGGACGGAGGGAGTATT | alignment | plot | GSM911924 | gi|241985579|gb|AK332840.1|AK332840 HTC Triticum aestivum cDNA, clone: WT005_A03, cultivar: Chinese Spring. | 2 | 1655 | 0 | 6 | 3 | 1.5 | 5' TTTTGGGACGGAGGGAGTATT 3' ||||||o|||||||||||| | 3' AGATAAAACCTTGCCTCCCTCATCAATAGTCC 5' |
1858 | Triticum aestivum | TTTTGGAACGGAGGGAGTA | alignment | plot | GSM911924 | gi|32128877|gb|BT009326.1|BT009326 PLN Triticum aestivum clone wlm24.pk0016.f9:fis, full insert mRNA sequence. | 2 | 1878 | 0.04 | 31 | 6.5 | 2 | 5' TTTTGGAACGGAGGGAGTA 3' ||| |||||||| |||||| 3' TTATAAATCCTTGCCTACCTCATGATGTCTGA 5' |
1859 | Triticum aestivum | ACATTATGGAACGGAGGGAGT | alignment | plot | GSM911924 | gi|241983701|gb|AK331643.1|AK331643 HTC Triticum aestivum cDNA, clone: WT002_A06, cultivar: Chinese Spring. | 2 | 866 | 0.02 | 2 | 2 | 2.5 | 5' ACATTATGGAACGGAGGGAGT 3' |||| | |||||o|||||||| 3' GGAATGTACTTCCTTGTCTCCCTCATACATTG 5' |
1860 | Triticum aestivum | CATTATGGAACGGAGGGAGTA | alignment | plot | GSM911924 | gi|241983701|gb|AK331643.1|AK331643 HTC Triticum aestivum cDNA, clone: WT002_A06, cultivar: Chinese Spring. | 2 | 865 | 0.02 | 3 | 3 | 2.5 | 5' CATTATGGAACGGAGGGAGTA 3' ||| | |||||o||||||||| 3' GAATGTACTTCCTTGTCTCCCTCATACATTGT 5' |
1861 | Triticum aestivum | TGACATGGTTGGCCCATGGAA | alignment | plot | GSM911924 | gi|241988316|gb|AK335574.1|AK335574 HTC Triticum aestivum cDNA, clone: WT013_E02, cultivar: Chinese Spring. | 2 | 3331 | 0 | 2 | 2 | 0 | 5' TGACATGGTTGGCCCATGGAA 3' ||||||||||||||||||||| 3' CGGTACTGTACCAACCGGGTACCTTAGGCATC 5' |
1862 | Triticum aestivum | TTTGGGACGGAGGGAGTACTT | alignment | plot | GSM911924 | gi|241989169|gb|AK336148.1|AK336148 HTC Triticum aestivum cDNA, clone: SET3_F15, cultivar: Chinese Spring. | 2 | 1145 | 0.01 | 14 | 14 | 2 | 5' TTTGGGACGGAGGGAGTACTT 3' ||||||||||||||||||| 3' TATAAAACCCTGCCTCCCTCATGTTATGTCGT 5' |
1863 | Triticum aestivum | GCTACTTCCTCCGTCCGAAAA | alignment | plot | GSM911924 | gi|32128634|gb|BT009083.1|BT009083 PLN Triticum aestivum clone wkm1c.pk0004.c7:fis, full insert mRNA sequence. | 2 | 977 | 0 | 5 | 5 | 2.5 | 5' GCTACTTCCTCCGTCCGAAAA 3' o|||||o|||||o|||| ||| 3' TCGATGATGAGGGAGGTAGGCCTTTATGGACA 5' |
1864 | Triticum aestivum | TCCCTCCGTTCGGAATTACAT | alignment | plot | GSM911924 | gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring. | 2 | 1413 | 0.05 | 5 | 5 | 3.5 | 5' TCCCTCCGTTCGGAATTACAT 3' ||||||||||| o|| || || 3' TATGAGGGAGGCAAGGTTTTATCTACTGAGTT 5' |
1865 | Triticum aestivum | TTTTGGGACGGAGGGAGTATT | alignment | plot | GSM911924 | gi|32129003|gb|BT009452.1|BT009452 PLN Triticum aestivum clone wlmk8.pk0022.f7:fis, full insert mRNA sequence. | 2 | 792 | 0.01 | 25 | 5 | 2.5 | 5' TTTTGGGACGGAGGGAGTATT 3' ||| ||o|||||||||||| | 3' TTATAAATCCTTGCCTCCCTCATCATCTATCT 5' |
1866 | Triticum aestivum | TTTTGGGACGGAGGGAGTATT | alignment | plot | GSM911924 | gi|241989169|gb|AK336148.1|AK336148 HTC Triticum aestivum cDNA, clone: SET3_F15, cultivar: Chinese Spring. | 2 | 1146 | 0 | 2 | 2 | 1.5 | 5' TTTTGGGACGGAGGGAGTATT 3' |||||||||||||||||||o 3' ATATAAAACCCTGCCTCCCTCATGTTATGTCG 5' |
1867 | Triticum aestivum | TATATACTTCCTCCGTCCGGA | alignment | plot | GSM911924 | gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring. | 2 | 1420 | 0.03 | 5 | 5 | 3 | 5' TATATACTTCCTCCGT-CCGGA 3' ||o|||||o||||||| ||oo| 3' TTTCATGTATGAGGGAGGCAAGGTTTTATCTA 5' |
1868 | Triticum aestivum | TGCATTTGCACCTGCACCT | alignment | plot | GSM911924 | gi|241987674|gb|AK334931.1|AK334931 HTC Triticum aestivum cDNA, clone: WT011_I14, cultivar: Chinese Spring. | 1 | 908 | 0.01 | 6 | 6 | 4 | 5' TGCATTTGCACCTGCACCT 3' o| |o||||| || ||||| 3' AGCAGCTTGAACGTCGA-GTGGAAGAACGGCG 5' |
1869 | Triticum aestivum | TCCGGAGGGATTCCCTCCTTG | alignment | plot | GSM911924 | gi|126544299|gb|AY297059.2|AY297059 PLN Triticum aestivum ubiquitin (WUB1) mRNA, complete cds. | 2 | 107 | 0 | 247 | 49.4 | 2.5 | 5' TCCGGAGGGATTCCCTCCTTG 3' ||||| ||o|| ||||||||| 3' GACCAGGCCCCCTTACGGGAGGAACAGGACCT 5' |
1870 | Triticum aestivum | CTGCACTGCCTCTTCCCTGGC | alignment | plot | GSM911924 | gi|241986355|gb|AK333616.1|AK333616 HTC Triticum aestivum cDNA, clone: WT006_O16, cultivar: Chinese Spring. | 2 | 728 | 0.01 | 6 | 6 | 2.5 | 5' CTGCACTGCCTCTTCCCTGGC 3' ||||||||||||o ||||| | 3' TCGTGACGTGACGGAGGTGGGACAGGAGCGGG 5' |
1871 | Triticum aestivum | TTTTGGTACAGAGGGAGTATT | alignment | plot | GSM911924 | gi|241988505|gb|AK335763.1|AK335763 HTC Triticum aestivum cDNA, clone: WT013_L12, cultivar: Chinese Spring. | 1 | 2446 | 0 | 2 | 2 | 4 | 5' TTTTGGTACAGAGGGAGTATT 3' |||||| |||| |||||| | 3' GTCTAAAACC-TGTCACCCTCAATAGGTGAGT 5' |
1872 | Triticum aestivum | TTTTGGGACAGAGGGAGTATT | alignment | plot | GSM911924 | gi|241988505|gb|AK335763.1|AK335763 HTC Triticum aestivum cDNA, clone: WT013_L12, cultivar: Chinese Spring. | 1 | 2446 | 0.01 | 2 | 2 | 4 | 5' TTTTGGGACAGAGGGAGTATT 3' |||| |||||| |||||| | 3' GTCTAAAA-CCTGTCACCCTCAATAGGTGAGT 5' |
1873 | Triticum aestivum | TTTTGGGACAGAGGGAGTATA | alignment | plot | GSM911924 | gi|241988505|gb|AK335763.1|AK335763 HTC Triticum aestivum cDNA, clone: WT013_L12, cultivar: Chinese Spring. | 1 | 2446 | 0.01 | 2 | 2 | 4 | 5' TTTTGGGACAGAGGGAGTATA 3' ||| |||||| |||||| || 3' AGTCTAAAACCTGTCACCCTCA-ATAGGTGAG 5' |
1874 | Triticum aestivum | TTTGGATTGAAGGGAGCTCTG | alignment | plot | GSM911924 | gi|47680448|gb|AY615200.1|AY615200 PLN Triticum aestivum transcription factor Myb3 (Myb3) mRNA, complete cds. | 0 | 988 | 0 | 158 | 158 | 2.5 | 5' TTTGGATTGAAGGGAGCTCTG 3' o||||| ||||||||||||oo 3' CATAGAACCTCACTTCCCTCGAGGTAGAAGTT 5' |
1875 | Triticum aestivum | ATAGATGAGAAGGTAGATCAA | alignment | plot | GSM911924 | gi|241986778|gb|AK334039.1|AK334039 HTC Triticum aestivum cDNA, clone: WT008_P02, cultivar: Chinese Spring. | 2 | 633 | 0.01 | 3 | 3 | 2 | 5' ATAGATGAGAAGGTAGATCAA 3' |||||||| |||||||||| | 3' AGGATATCTACTGTTCCATCTAGCTTTGATTA 5' |
1876 | Triticum aestivum | TGTACTTCCTCCGTCCCAAAA | alignment | plot | GSM911924 | gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring. | 2 | 1418 | 0.02 | 13 | 13 | 2.5 | 5' TGTACTTCCTCCGTCCCAAAA 3' oo||||o||||||| |||||| 3' TCATGTATGAGGGAGGCAAGGTTTTATCTACT 5' |
1877 | Triticum aestivum | ACTACTCCCTCCGTTCCTAAA | alignment | plot | GSM911924 | gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring. | 2 | 1418 | 0 | 13 | 13 | 2 | 5' ACTACTCCCTCCGTTCCTAAA 3' | ||||||||||||||| ||| 3' CATGT-ATGAGGGAGGCAAGGTTTTATCTACT 5' |
1878 | Triticum aestivum | TTGGAGTGAAGGGAGCTCCA | alignment | plot | GSM911924 | gi|47680448|gb|AY615200.1|AY615200 PLN Triticum aestivum transcription factor Myb3 (Myb3) mRNA, complete cds. | 2 | 987 | 0 | 2 | 2 | 0 | 5' TTGGAGTGAAGGGAGCTCCA 3' |||||||||||||||||||| 3' ATAGAACCTCACTTCCCTCGAGGTAGAAGTTT 5' |
1879 | Triticum aestivum | TTTGGGACGGAGGGAGTACTT | alignment | plot | GSM911924 | gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring. | 2 | 1349 | 0.01 | 9 | 4.5 | 2.5 | 5' TTTGGGACGGAGGGAGTACTT 3' |||||o||||||||||||| 3' GATAAAACCTTGCCTCCCTCATGCTTTTAGTG 5' |
1880 | Triticum aestivum | CTCCGTCCCAAAATATAAGAA | alignment | plot | GSM911924 | gi|241986608|gb|AK333869.1|AK333869 HTC Triticum aestivum cDNA, clone: SET2_C23, cultivar: Chinese Spring. | 2 | 1506 | 0 | 4 | 4 | 1 | 5' CTCCGTCCCAAAATATAAGAA 3' |||||||||| |||||||||| 3' GAGGGAGGCAGGGTATTATATTCTTGCAAAAA 5' |
1881 | Triticum aestivum | TGCAGTTGCTGTCTCAAGCTT | alignment | plot | GSM911924 | gi|161158849|gb|AM502905.1|AM502905 PLN Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM32B (WM32B gene). | 1 | 330 | 0 | 2 | 1 | 0.5 | 5' TGCAGTTGCTGTCTCAAGCTT 3' |||||||||||o||||||||| 3' CAGCACGTCAACGACGGAGTTCGAACGACGGA 5' |
1882 | Triticum aestivum | TGAGAAGGTAGATCATAATAG | alignment | plot | GSM911924 | gi|241986385|gb|AK333646.1|AK333646 HTC Triticum aestivum cDNA, clone: WT006_P22, cultivar: Chinese Spring. | 0 | 579 | 0 | 19 | 19 | 3.5 | 5' TGAGAAGGTAGATCATAATAG 3' |||| ||| ||||||o |||| 3' TAGTACTC-TCCCTCTAGTGCTATCGAGACCT 5' |
1883 | Triticum aestivum | TGAGAAGGTAGATCATAATAGC | alignment | plot | GSM911924 | gi|241988983|gb|AK330205.1|AK330205 HTC Triticum aestivum cDNA, clone: SET3_O05, cultivar: Chinese Spring. | 2 | 674 | 0.05 | 5 | 5 | 3 | 5' TGAGAAGGTAGATCATAATAGC 3' ||||||||||||||| ||o o| 3' ATCTACTCTTCCATCTAGTTTTGATGACTATT 5' |
1884 | Triticum aestivum | TTAGATGAGAAGGCAGATCATA | alignment | plot | GSM911924 | gi|241988983|gb|AK330205.1|AK330205 HTC Triticum aestivum cDNA, clone: SET3_O05, cultivar: Chinese Spring. | 2 | 679 | 0.04 | 14 | 14 | 3 | 5' TTAGATGAGAAGGCAGATCATA 3' |||||||||||| |||||| | 3' AGGATATCTACTCTTCCATCTAGTTTTGATGA 5' |
1885 | Triticum aestivum | CGTCGAGGAGGAGCTCGAGTG | alignment | plot | GSM911924 | gi|241983622|gb|AK331564.1|AK331564 HTC Triticum aestivum cDNA, clone: WT007_N04, cultivar: Chinese Spring. | 0 | 846 | 0.01 | 16 | 16 | 4 | 5' CGTCGAGGAGGAGCTCGAGTG 3' || ||||||||||| ||| | 3' GCGTCCA-CTCCTCCTCGACCTCCCGCTCCCC 5' |
1886 | Triticum aestivum | AATTATGGAACGGAGGGAGTG | alignment | plot | GSM911924 | gi|241987650|gb|AK334907.1|AK334907 HTC Triticum aestivum cDNA, clone: WT011_H08, cultivar: Chinese Spring. | 2 | 1777 | 0.01 | 8 | 2.66667 | 2.5 | 5' AATTATGGAACGGAGGGAGTG 3' | ||| ||||||||||||||o 3' TTTATAAAT-CCTTGCCTCCCTCATGTAGGTA 5' |
1887 | Triticum aestivum | ATTATGGGACGGAGGGAGT | alignment | plot | GSM911924 | gi|241987650|gb|AK334907.1|AK334907 HTC Triticum aestivum cDNA, clone: WT011_H08, cultivar: Chinese Spring. | 2 | 1776 | 0.05 | 4 | 1 | 2.5 | 5' ATTATGGGACGGAGGGAGT 3' ||| ||o||||||||||| 3' TTATAAAT-CCTTGCCTCCCTCATGTAGGTAT 5' |
1888 | Triticum aestivum | TGCCAAAGGAGAATTGCCCT | alignment | plot | GSM911924 | gi|241986872|gb|AK334133.1|AK334133 HTC Triticum aestivum cDNA, clone: WT009_M15, cultivar: Chinese Spring. | 2 | 451 | 0.04 | 2 | 2 | 2.5 | 5' TGCCAAAGGAGAATTGCCCT 3' || |||||o||||| ||||| 3' AAAAACAGTTTCTTCTTATCGGGAACTTCATT 5' |
1889 | Triticum aestivum | TTACTCCCTCCGTCCCACAAT | alignment | plot | GSM911924 | gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring. | 2 | 1417 | 0.02 | 4 | 4 | 3 | 5' TTACTCCCTCCGTCCCACAAT 3' |||||||||||| ||| ||| 3' CATGTATGAGGGAGGCAAGGTTTTATCTACTG 5' |
1890 | Triticum aestivum | ATACTCCCTCCGTCCTCGAAA | alignment | plot | GSM911924 | gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring. | 2 | 1417 | 0 | 4 | 4 | 2.5 | 5' ATACTCCCTCCGTCCTCGAAA 3' ||||||||||||| | |o||| 3' CATGTATGAGGGAGGCAAG-GTTTTATCTACT 5' |
1891 | Triticum aestivum | ATACTCCCTCTGTCCCAAATA | alignment | plot | GSM911924 | gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring. | 2 | 1417 | 0 | 4 | 4 | 2.5 | 5' ATACTCCCTCTGTCCCAAATA 3' ||||||||||o|| ||||| | 3' CATGTATGAGGGAGGCAAGGTTT-TATCTACT 5' |
1892 | Triticum aestivum | TTTTGGGACGGAGGGAGTATT | alignment | plot | GSM911924 | gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring. | 2 | 1350 | 0 | 6 | 3 | 2 | 5' TTTTGGGACGGAGGGAGTATT 3' ||||||o||||||||||||o 3' AGATAAAACCTTGCCTCCCTCATGCTTTTAGT 5' |
1893 | Triticum aestivum | TAGATACCTCCGTATCTAGAC | alignment | plot | GSM911924 | gi|241987805|gb|AK335062.1|AK335062 HTC Triticum aestivum cDNA, clone: WT011_P12, cultivar: Chinese Spring. | 2 | 1855 | 0.04 | 2 | 2 | 3.5 | 5' TAGATACCTCCGTATCTAGAC 3' ||o|o||||||o ||||||| 3' TGTTATTTGTGGAGGTTCAGATCTGTCTATTT 5' |
1894 | Triticum aestivum | TTTGGGACGGAGGGAGTACTT | alignment | plot | GSM911924 | gi|241987650|gb|AK334907.1|AK334907 HTC Triticum aestivum cDNA, clone: WT011_H08, cultivar: Chinese Spring. | 2 | 1774 | 0 | 12 | 2.4 | 2.5 | 5' TTTGGGACGGAGGGAGTACTT 3' || ||o||||||||||||| | 3' TATAAATCCTTGCCTCCCTCATGTAGGTATGT 5' |
1895 | Triticum aestivum | TATGGGACGGAGGGAGTATTT | alignment | plot | GSM911924 | gi|241987650|gb|AK334907.1|AK334907 HTC Triticum aestivum cDNA, clone: WT011_H08, cultivar: Chinese Spring. | 2 | 1774 | 0.02 | 12 | 2.4 | 3 | 5' TATGGGACGGAGGGAGTATTT 3' || ||o||||||||||||o | 3' ATAAAT-CCTTGCCTCCCTCATGTAGGTATGT 5' |
1896 | Triticum aestivum | GCCCTCAAAGGCTTCGAACCG | alignment | plot | GSM911924 | gi|241990729|gb|AK330885.1|AK330885 HTC Triticum aestivum cDNA, clone: SET5_I22, cultivar: Chinese Spring. | 2 | 552 | 0.01 | 2 | 2 | 2.5 | 5' GCCCTCAAAGGCTTCGAACCG 3' ||||||||||||o |||||| 3' GGTACGGGAGTTTCCGGCGCTTGGGGGAAACC 5' |
1897 | Triticum aestivum | AGATGTACTCCCTCCGTCCGA | alignment | plot | GSM911924 | gi|241983674|gb|AK331616.1|AK331616 HTC Triticum aestivum cDNA, clone: WT007_P05, cultivar: Chinese Spring. | 2 | 5254 | 0 | 3 | 3 | 2.5 | 5' AGATGTACTCCCTCCGTCCGA 3' ||o|||||||||||||||| 3' ATGTAGTATATGAGGGAGGCAGGCTTTTTCGA 5' |
1898 | Triticum aestivum | TTTGGGACGGAGGGAGTACTA | alignment | plot | GSM911924 | gi|241986678|gb|AK333939.1|AK333939 HTC Triticum aestivum cDNA, clone: WT008_P05, cultivar: Chinese Spring. | 2 | 1801 | 0 | 17 | 8.5 | 2.5 | 5' TTTGGGACGGAGGGAGTACTA 3' || ||o|||||||||||| || 3' TATAAATCCTTGCCTCCCTCAT-ATACTATGA 5' |
1899 | Triticum aestivum | TTTGGGACGGAGGGAGTACAT | alignment | plot | GSM911924 | gi|241986678|gb|AK333939.1|AK333939 HTC Triticum aestivum cDNA, clone: WT008_P05, cultivar: Chinese Spring. | 2 | 1801 | 0 | 17 | 8.5 | 2.5 | 5' TTTGGGACGGAGGGAGTACAT 3' || ||o|||||||||||| || 3' TATAAATCCTTGCCTCCCTCATATACTATGAT 5' |
1900 | Triticum aestivum | TATGGGACGGAGGGAGTATTT | alignment | plot | GSM911924 | gi|241986678|gb|AK333939.1|AK333939 HTC Triticum aestivum cDNA, clone: WT008_P05, cultivar: Chinese Spring. | 2 | 1801 | 0 | 17 | 8.5 | 2.5 | 5' TATGGGACGGAGGGAGTATTT 3' || ||o||||||||||||| | 3' ATAAAT-CCTTGCCTCCCTCATATACTATGAT 5' |
1901 | Triticum aestivum | TATTTGTTTACAGAGGGAGTT | alignment | plot | GSM911924 | gi|241988346|gb|AK335604.1|AK335604 HTC Triticum aestivum cDNA, clone: WT013_F06, cultivar: Chinese Spring. | 2 | 2379 | 0.02 | 8 | 8 | 2 | 5' TATTTGTTTACAGAGGGAGTT 3' |||| ||||||||||||||| 3' GAATATAATCAAATGTCTCCCTCATTATGCGT 5' |
1902 | Triticum aestivum | CTCCGTTCCTAAATATAAGTC | alignment | plot | GSM911924 | gi|241985433|gb|AK332693.1|AK332693 HTC Triticum aestivum cDNA, clone: WT004_K03, cultivar: Chinese Spring. | 2 | 1270 | 0.05 | 3 | 3 | 3.5 | 5' CTCCGTTCCTAAATATAAGTC 3' |||||||| ||||||o ||| 3' GAGGGAGGCAAGTATTTATGAACAGAAAGAAG 5' |
1903 | Triticum aestivum | TATATTTTGGGACGGAGGGAG | alignment | plot | GSM911924 | gi|241985433|gb|AK332693.1|AK332693 HTC Triticum aestivum cDNA, clone: WT004_K03, cultivar: Chinese Spring. | 2 | 1142 | 0.01 | 3 | 3 | 2.5 | 5' TATATTTTGGGACGGAGGGAG 3' |||||| ||o|||||||||| 3' CTGTTTATAAATCCTTGCCTCCCTCATTTTGC 5' |
1904 | Triticum aestivum | TCCCTCCGTTCGGAATTACTT | alignment | plot | GSM911924 | gi|241985433|gb|AK332693.1|AK332693 HTC Triticum aestivum cDNA, clone: WT004_K03, cultivar: Chinese Spring. | 2 | 1273 | 0.01 | 5 | 5 | 2.5 | 5' TCCCTCCGTTCGGAATTACTT 3' |||||||||||o || ||||| 3' GATGAGGGAGGCAAGTATTTATGAACAGAAAG 5' |
1905 | Triticum aestivum | TGTACTTCCTCCGTCCCAAAA | alignment | plot | GSM911924 | gi|241983674|gb|AK331616.1|AK331616 HTC Triticum aestivum cDNA, clone: WT007_P05, cultivar: Chinese Spring. | 2 | 5251 | 0 | 16 | 16 | 2 | 5' TGTACTTCCTCCGTCCCAAAA 3' |o||||o||||||||| |||| 3' TAGTATATGAGGGAGGCAGGCTTTTTCGAACA 5' |
1906 | Triticum aestivum | TGTACTCCCTCCGTTCCTAAA | alignment | plot | GSM911924 | gi|241983674|gb|AK331616.1|AK331616 HTC Triticum aestivum cDNA, clone: WT007_P05, cultivar: Chinese Spring. | 2 | 5251 | 0.01 | 16 | 16 | 2.5 | 5' TGTACTCCCTCCGTTCCTAAA 3' |o|||||||||||| || ||| 3' TAGTATATGAGGGAGGCA-GGCTTTTTCGAAC 5' |
1907 | Triticum aestivum | ACTACTCCCTCCGTTCCTAAA | alignment | plot | GSM911924 | gi|241983674|gb|AK331616.1|AK331616 HTC Triticum aestivum cDNA, clone: WT007_P05, cultivar: Chinese Spring. | 2 | 5251 | 0.01 | 16 | 16 | 3.5 | 5' ACTACTCCCTCCGTTCCTAAA 3' | ||||||||||||o| ||| 3' AGTAT-ATGAGGGAGGCAGGCTTTTTCGAACA 5' |
1908 | Triticum aestivum | AATTATGGAACGGAGGGAGTG | alignment | plot | GSM911924 | gi|241985433|gb|AK332693.1|AK332693 HTC Triticum aestivum cDNA, clone: WT004_K03, cultivar: Chinese Spring. | 2 | 1140 | 0.01 | 8 | 8 | 2.5 | 5' AATTATGGAACGGAGGGAGTG 3' | ||| ||||||||||||||o 3' TTTATAAAT-CCTTGCCTCCCTCATTTTGCGT 5' |
1909 | Triticum aestivum | TAGATACATCCGTATGTAGAC | alignment | plot | GSM911924 | gi|241985433|gb|AK332693.1|AK332693 HTC Triticum aestivum cDNA, clone: WT004_K03, cultivar: Chinese Spring. | 2 | 1188 | 0.04 | 7 | 3.5 | 3 | 5' TAGATACATCCGTATGTAGAC 3' || |||||||||||||||| 3' ACAGATGTATGTAGGCATACATCATCAGTAAA 5' |
1910 | Triticum aestivum | TATTATGGGACGGAGGGAGTA | alignment | plot | GSM911924 | gi|241990551|gb|AK330708.1|AK330708 HTC Triticum aestivum cDNA, clone: SET5_B19, cultivar: Chinese Spring. | 2 | 3219 | 0 | 6 | 3 | 2.5 | 5' TATTATGGGACGGAGGGAGTA 3' |||| ||||||o| ||||||| 3' GAATATAAAACCCTGTCCCCCTCATCGTCTGT 5' |
1911 | Triticum aestivum | TTATTTTGGGACGGAGGGAGT | alignment | plot | GSM911924 | gi|241990551|gb|AK330708.1|AK330708 HTC Triticum aestivum cDNA, clone: SET5_B19, cultivar: Chinese Spring. | 2 | 3220 | 0.03 | 2 | 1 | 2.5 | 5' TTATTTTGGGACGGAGGGAGT 3' |||||||||||o| |||||| 3' AGAATATAAAACCCTGTCCCCCTCATCGTCTG 5' |
1912 | Triticum aestivum | TATTTGTTTACAGAGGGAGTT | alignment | plot | GSM911924 | gi|241990576|gb|AK330733.1|AK330733 HTC Triticum aestivum cDNA, clone: SET5_C19, cultivar: Chinese Spring. | 2 | 2132 | 0 | 11 | 11 | 2 | 5' TATTTGTTTACAGAGGGAGTT 3' |||| ||||||||||||||| 3' GAATATAATCAAATGTCTCCCTCATTATTAAA 5' |
1913 | Triticum aestivum | TTTTGGGACGGAGGGAGTATT | alignment | plot | GSM911924 | gi|241987650|gb|AK334907.1|AK334907 HTC Triticum aestivum cDNA, clone: WT011_H08, cultivar: Chinese Spring. | 2 | 1775 | 0.03 | 31 | 6.5 | 3 | 5' TTTTGGGACGGAGGGAGTATT 3' ||| ||o||||||||||||o 3' TTATAAATCCTTGCCTCCCTCATGTAGGTATG 5' |
1914 | Triticum aestivum | AATTATGGAACGGAGGGAGTG | alignment | plot | GSM911924 | gi|241986968|gb|AK334229.1|AK334229 HTC Triticum aestivum cDNA, clone: WT009_K22, cultivar: Chinese Spring. | 2 | 1739 | 0.01 | 5 | 5 | 2.5 | 5' AATTATGGAACGGAGGGAGTG 3' | ||| ||||||||||||||o 3' TTCATAAAT-CCTTGCCTCCCTCATATGTAGT 5' |
1915 | Triticum aestivum | ATAGCATCATCCATCCTACCA | alignment | plot | GSM911924 | gi|241989083|gb|AK336062.1|AK336062 HTC Triticum aestivum cDNA, clone: SET3_C06, cultivar: Chinese Spring. | 0 | 619 | 0 | 32 | 32 | 4 | 5' ATAGCATCATCCATC-CTACCA 3' || |||||||||||| | ||| 3' TTTGTAACGTAGTAGGTAGTGTTGGAGGTTTG 5' |
1916 | Triticum aestivum | AATTATGGAACGGAGGGAGTA | alignment | plot | GSM911924 | gi|241983524|gb|AK331464.1|AK331464 HTC Triticum aestivum cDNA, clone: WT007_J01, cultivar: Chinese Spring. | 2 | 1000 | 0.03 | 17 | 17 | 3 | 5' AATTATGGAACGGAGGGAGTA 3' | ||| |||||| |||||||| 3' AATATAAAT-CCTTGCATCCCTCATAAAACGT 5' |
1917 | Triticum aestivum | GTACTCCCTCCGTCCTAAAAT | alignment | plot | GSM911924 | gi|241983674|gb|AK331616.1|AK331616 HTC Triticum aestivum cDNA, clone: WT007_P05, cultivar: Chinese Spring. | 2 | 5250 | 0.02 | 3 | 3 | 2.5 | 5' GTACTCCCTCCGTCCTAAAAT 3' o|||||||||||||| |||| 3' AGTATATGAGGGAGGCAGGCTTTTTCGAACAG 5' |
1918 | Triticum aestivum | ATACTCCCTCCGTCCCGAATT | alignment | plot | GSM911924 | gi|241983674|gb|AK331616.1|AK331616 HTC Triticum aestivum cDNA, clone: WT007_P05, cultivar: Chinese Spring. | 2 | 5250 | 0.02 | 3 | 3 | 3 | 5' ATACTCCCTCCGTCCCGAATT 3' ||||||||||||||| ||| 3' AGTATATGAGGGAGGCAGG-CTTTTTCGAACA 5' |
1919 | Triticum aestivum | GATACTCCCTCCGTTCCTAAA | alignment | plot | GSM911924 | gi|241987616|gb|AK334873.1|AK334873 HTC Triticum aestivum cDNA, clone: WT011_F13, cultivar: Chinese Spring. | 2 | 2292 | 0.02 | 2 | 2 | 3 | 5' GATACTCCCTCCGTTCCTAAA 3' o||||||| |||||o|| ||| 3' CGCTTTATGAGGTAGGCAGGGTTTTATCGAAC 5' |
1920 | Triticum aestivum | CTGCACTGCCTCTTCCCTGGC | alignment | plot | GSM911924 | gi|241986083|gb|AK333344.1|AK333344 HTC Triticum aestivum cDNA, clone: WT006_D23, cultivar: Chinese Spring. | 2 | 504 | 0 | 2 | 2 | 1 | 5' CTGCACTGCCTCTTCCCTGGC 3' ||||||||||||| ||||||| 3' ACTGGACGTGACGGAGACGGGACCGTGCGGGC 5' |
1921 | Triticum aestivum | TACTCCCTCCATCCCAAAATA | alignment | plot | GSM911924 | gi|241990523|gb|AK330680.1|AK330680 HTC Triticum aestivum cDNA, clone: SET1_G09, cultivar: Chinese Spring. | 2 | 557 | 0.03 | 5 | 5 | 3 | 5' TACTCCCTCCATCCCAAAATA 3' |||||||||||||| || || 3' TATCATGAGGGAGGTAGGCCTTAATGAACAGC 5' |
1922 | Triticum aestivum | TTTTGGGACGGAGGGAGTATT | alignment | plot | GSM911924 | gi|241983524|gb|AK331464.1|AK331464 HTC Triticum aestivum cDNA, clone: WT007_J01, cultivar: Chinese Spring. | 2 | 998 | 0.01 | 52 | 26 | 2.5 | 5' TTTTGGGACGGAGGGAGTATT 3' ||| ||o||| |||||||||| 3' ATATAAATCCTTGCATCCCTCATAAAACGTCG 5' |
1923 | Triticum aestivum | TAGTGATCTAAACACTCTTA | alignment | plot | GSM911924 | gi|241987799|gb|AK335056.1|AK335056 HTC Triticum aestivum cDNA, clone: WT011_P07, cultivar: Chinese Spring. | 0 | 1651 | 0 | 7 | 7 | 4 | 5' TAGTGATCTAAACACTCTTA 3' o|o|| ||o||||| ||o|| 3' ACGCGTTACAAGGTTTGT-AGGATCTGTTGTT 5' |
1924 | Triticum aestivum | ATAGCATCATCCATCCTACCA | alignment | plot | GSM911924 | gi|241987514|gb|AK334771.1|AK334771 HTC Triticum aestivum cDNA, clone: WT011_A02, cultivar: Chinese Spring. | 0 | 1561 | 0 | 969 | 969 | 4 | 5' ATAGCATCATCCATCCTACCA 3' |||||||||||||| | || 3' CCTGTATCGTAGTAGGTAAGCCGGGTACGACG 5' |
1925 | Triticum aestivum | TTTTGGGACGGAGGGAGTACA | alignment | plot | GSM911924 | gi|241985433|gb|AK332693.1|AK332693 HTC Triticum aestivum cDNA, clone: WT004_K03, cultivar: Chinese Spring. | 2 | 1138 | 0.01 | 31 | 6.5 | 2.5 | 5' TTTTGGGACGGAGGGAGTACA 3' ||| ||o|||||||||||| | 3' TTATAAATCCTTGCCTCCCTCATTTTGCGTTT 5' |
1926 | Triticum aestivum | AAACTTACTTCCTCCGTCCAA | alignment | plot | GSM911924 | gi|241989807|gb|AK330348.1|AK330348 HTC Triticum aestivum cDNA, clone: SET4_D21, cultivar: Chinese Spring. | 1 | 1333 | 0 | 14 | 14 | 4 | 5' AAACTTACTTCCTCCGTCCAA 3' ||||| |||||||| |||| 3' TAGGGTTGAAAGAAGGAGG-AGGTGAGGGGCG 5' |
1927 | Triticum aestivum | TAGTACAAAGTTGAGTCATC | alignment | plot | GSM911924 | gi|241985398|gb|AK332658.1|AK332658 HTC Triticum aestivum cDNA, clone: SET1_N24, cultivar: Chinese Spring. | 0 | 1012 | 0.01 | 18 | 18 | 4 | 5' TAGTACAAAGTTGAGTCATC 3' ||| ||||||| |oo|||| 3' GGTTTTCA-GTTTCAAGTTGGTAGGTCTGGAT 5' |
1928 | Triticum aestivum | TGGAGTGGAGTGGAGTGGAGT | alignment | plot | GSM911924 | gi|60100211|gb|AY781347.1|AY781347 PLN Triticum aestivum putative Zn-finger transcription factor mRNA, partial cds. | 2 | 610 | 0 | 4 | 1.33333 | 0 | 5' TGGAGTGGAGTGGAGTGGAGT 3' ||||||||||||||||||||| 3' TATGACCTCACCTCACCTCACCTCATCATAAA 5' |
1929 | Triticum aestivum | TTTTGGGACGGAGGGAGTATT | alignment | plot | GSM911924 | gi|241986968|gb|AK334229.1|AK334229 HTC Triticum aestivum cDNA, clone: WT009_K22, cultivar: Chinese Spring. | 2 | 1737 | 0.04 | 9 | 9 | 2.5 | 5' TTTTGGGACGGAGGGAGTATT 3' ||| ||o||||||||||||| 3' TCATAAATCCTTGCCTCCCTCATATGTAGTTC 5' |
1930 | Triticum aestivum | TTTTGGAACGGAGGGAGTAGT | alignment | plot | GSM911924 | gi|241986968|gb|AK334229.1|AK334229 HTC Triticum aestivum cDNA, clone: WT009_K22, cultivar: Chinese Spring. | 2 | 1737 | 0.01 | 9 | 9 | 2 | 5' TTTTGGAACGGAGGGAGTAGT 3' ||| ||||||||||||||| | 3' TCATAAATCCTTGCCTCCCTCAT-ATGTAGTT 5' |
1931 | Triticum aestivum | TTTTGGGACGGAGGGAGTATT | alignment | plot | GSM911924 | gi|241988920|gb|AK330142.1|AK330142 HTC Triticum aestivum cDNA, clone: SET3_L15, cultivar: Chinese Spring. | 2 | 1804 | 0 | 3 | 3 | 1.5 | 5' TTTTGGGACGGAGGGAGTATT 3' ||||||o|||||o||||||o| 3' AGATAAAACCTTGCCTTCCTCATGAATGAACG 5' |
1932 | Triticum aestivum | GCTCCCTCCGTCCCATAATAT | alignment | plot | GSM911924 | gi|241983639|gb|AK331581.1|AK331581 HTC Triticum aestivum cDNA, clone: SET1_J20, cultivar: Chinese Spring. | 2 | 608 | 0.05 | 3 | 3 | 3.5 | 5' GCTCCCTCCGTCCCATAATAT 3' o|||||||||| ||| |||| 3' ATGGTGAGGGAGGCAAGGTTTTATCTACTGAG 5' |
1933 | Triticum aestivum | TGAAGCTGCCAGCATGATCTA | alignment | plot | GSM911924 | gi|241987072|gb|AK334329.1|AK334329 HTC Triticum aestivum cDNA, clone: WT009_L17, cultivar: Chinese Spring. | 0 | 3124 | 0 | 37 | 37 | 4 | 5' TGAAGCTGCCAGCATGATCTA 3' ||||||||||| |||||| 3' TTTATGTTCGACGGTCGGACTAGAACGTCCCA 5' |
1934 | Triticum aestivum | TATTATGGGACGGAGGGAGTA | alignment | plot | GSM911924 | gi|32128647|gb|BT009096.1|BT009096 PLN Triticum aestivum clone wkm2c.pk005.g2:fis, full insert mRNA sequence. | 2 | 803 | 0.03 | 8 | 8 | 2.5 | 5' TATTATGGGACGGAGGGAGTA 3' || | |||o|||||||||||| 3' GCTCATTAAACCTTGCCTCCCTCATCGTCCTT 5' |
1935 | Triticum aestivum | CATTATGGGACGGAGGGAGTA | alignment | plot | GSM911924 | gi|32128647|gb|BT009096.1|BT009096 PLN Triticum aestivum clone wkm2c.pk005.g2:fis, full insert mRNA sequence. | 2 | 803 | 0 | 8 | 8 | 2.5 | 5' CATTATGGGACGGAGGGAGTA 3' ||| |||o|||||||||||| 3' CTCATTAA-ACCTTGCCTCCCTCATCGTCCTT 5' |
1936 | Triticum aestivum | TTGACCAAGTTTATAGAGAAA | alignment | plot | GSM911924 | gi|241987295|gb|AK334552.1|AK334552 HTC Triticum aestivum cDNA, clone: WT010_E13, cultivar: Chinese Spring. | 2 | 1515 | 0.02 | 2 | 2 | 2.5 | 5' TTGACCAAGTTTATAGAGAAA 3' |||||| ||||||||o |||| 3' TCTTAACTGG-TCAAATATTCCTTTTGATCGG 5' |
1937 | Triticum aestivum | TTTGGGACGGAGGGAGTACTT | alignment | plot | GSM911924 | gi|32128647|gb|BT009096.1|BT009096 PLN Triticum aestivum clone wkm2c.pk005.g2:fis, full insert mRNA sequence. | 2 | 800 | 0.05 | 2 | 2 | 3 | 5' TTTGGGACGGAGGGAGTACTT 3' |||||o|||||||||||| o 3' CATTAAACCTTGCCTCCCTCATCGTCCTTCGT 5' |
1938 | Triticum aestivum | AGAGTTACTCCCTCCGTCCGG | alignment | plot | GSM911924 | gi|241987171|gb|AK334428.1|AK334428 HTC Triticum aestivum cDNA, clone: WT009_L10, cultivar: Chinese Spring. | 2 | 1750 | 0 | 2 | 2 | 1.5 | 5' AG-AGTTACTCCCTCCGTCCGG 3' || ||o|||||||||||||||| 3' CAATCGTCGATGAGGGAGGCAGGCCTTTATGA 5' |
1939 | Triticum aestivum | TTACTCCCTCCGTCCCACAAT | alignment | plot | GSM911924 | gi|241983639|gb|AK331581.1|AK331581 HTC Triticum aestivum cDNA, clone: SET1_J20, cultivar: Chinese Spring. | 2 | 610 | 0.01 | 7 | 7 | 3 | 5' TTACTCCCTCCGTCCCACAAT 3' oo||||||||||| ||| ||| 3' TGATGGTGAGGGAGGCAAGGTTTTATCTACTG 5' |
1940 | Triticum aestivum | AGGATCTTGATGATGCTGCAG | alignment | plot | GSM911924 | gi|241983258|gb|AK331198.1|AK331198 HTC Triticum aestivum cDNA, clone: SET6_M01, cultivar: Chinese Spring. | 0 | 1449 | 0 | 282 | 282 | 3.5 | 5' AGGATCTTGATGATGCTGCAG 3' |o||| |||||||||||| | 3' CCACCCTTAGCACTACTACGACGCCGACGACG 5' |
1941 | Triticum aestivum | TAGCCAAGGATGATTTGCC | alignment | plot | GSM911924 | gi|32129093|gb|BT009542.1|BT009542 PLN Triticum aestivum clone wr1.pk0153.c7:fis, full insert mRNA sequence. | 0 | 777 | 0 | 148 | 74 | 2 | 5' TAGCCAAGGATGATTTGCC 3' |||||||||||| ||||| 3' TTATTTCGGTTCCTACTCAACGGACTGGTGTG 5' |
1942 | Triticum aestivum | CTACTCCCTCCGTTCGAAA | alignment | plot | GSM911924 | gi|241988536|gb|AK335793.1|AK335793 HTC Triticum aestivum cDNA, clone: WT013_M16, cultivar: Chinese Spring. | 2 | 968 | 0.05 | 2 | 2 | 2.5 | 5' CTACTCCCTCCGTTCGAAA 3' ||||||||||||||o || 3' CATATATGAGGGAGGCAAGTATTTGTTCACTG 5' |
1943 | Triticum aestivum | ATACTCCCTCCGTCCCATAAT | alignment | plot | GSM911924 | gi|241988536|gb|AK335793.1|AK335793 HTC Triticum aestivum cDNA, clone: WT013_M16, cultivar: Chinese Spring. | 2 | 968 | 0 | 2 | 2 | 3 | 5' ATACTCCCTCCGTCCCATAAT 3' ||||||||||||| |||||| 3' CATATATGAGGGAGGCAAGGTATTTTTCACTG 5' |
1944 | Triticum aestivum | TGTACTCCCTCCGTTCCTAAA | alignment | plot | GSM911924 | gi|241988536|gb|AK335793.1|AK335793 HTC Triticum aestivum cDNA, clone: WT013_M16, cultivar: Chinese Spring. | 2 | 969 | 0 | 4 | 4 | 1.5 | 5' TGTACTCCCTCCGTTCCTAAA 3' |o|||||||||||||| |||| 3' ACATATATGAGGGAGGCAAGTATTTGTTCACT 5' |
1945 | Triticum aestivum | ACTACTCCCTCCGTTCCTAAA | alignment | plot | GSM911924 | gi|241988536|gb|AK335793.1|AK335793 HTC Triticum aestivum cDNA, clone: WT013_M16, cultivar: Chinese Spring. | 2 | 969 | 0 | 4 | 4 | 2 | 5' ACTACTCCCTCCGTTCCTAAA 3' | |||||||||||||| |||| 3' CATAT-ATGAGGGAGGCAAGTATTTGTTCACT 5' |
1946 | Triticum aestivum | TTTTGGGACGGAGGGAGTATT | alignment | plot | GSM911924 | gi|241983639|gb|AK331581.1|AK331581 HTC Triticum aestivum cDNA, clone: SET1_J20, cultivar: Chinese Spring. | 2 | 531 | 0 | 3 | 3 | 2 | 5' TTTTGGGACGGAGGGAGTATT 3' ||||||o|||||||||||| o 3' AGATAAAACCTTGCCTCCCTCATCGTACCTTC 5' |
1947 | Triticum aestivum | TTTTGGGACGGAGGGAGTATT | alignment | plot | GSM911924 | gi|32128647|gb|BT009096.1|BT009096 PLN Triticum aestivum clone wkm2c.pk005.g2:fis, full insert mRNA sequence. | 2 | 801 | 0.05 | 3 | 3 | 3 | 5' TTTTGGGACGGAGGGAGTATT 3' |||||o|||||||||||| o 3' TCATTAAACCTTGCCTCCCTCATCGTCCTTCG 5' |
1948 | Vitis vinifera | GGAATCTTGATGATGCTGCAG | alignment | plot | GSM458931-2730 | VIT_19s0014g04430.t01 cdna:novel chromosome:IGGP_12x:19:4714589:4721730:-1 gene:VIT_19s0014g04430 transcript:VIT_19s0014g04430.t | 2 | 336 | 0.03 | 2 | 0.4 | 3.5 | 5' GGAATCTTGATGATGCTGCAG 3' ||||||||||||| | |o || 3' CAGACCTTAGAACTACTTCTATTTCTTCCGGA 5' |
1949 | Vitis vinifera | TGGATGCAGCGGTTCATCGAT | alignment | plot | GSM458931-2730 | VIT_06s0004g04240.t01 cdna:novel chromosome:IGGP_12x:6:5192100:5192872:1 gene:VIT_06s0004g04240 transcript:VIT_06s0004g04240.t01 | 2 | 509 | 0.05 | 2 | 1 | 4 | 5' TGGATGCAGCGGTTCATCGAT 3' | |||| ||| |||||| ||| 3' CAGCAACTACTTCGACAAGTA-CTAGGGGTAC 5' |
1950 | Vitis vinifera | TCCAAAGGGATCGCATTGATC | alignment | plot | GSM458931-2730 | VIT_14s0068g01330.t01 cdna:novel chromosome:IGGP_12x:14:25056097:25060280:1 gene:VIT_14s0068g01330 transcript:VIT_14s0068g01330. | 1 | 1937 | 0 | 2 | 2 | 1 | 5' TCCAAAGGGATCGCATTGATC 3' |||||||||||||||||| || 3' CTGTAGGTTTCCCTAGCGTAAC-AGAGTATGA 5' |
1951 | Vitis vinifera | TTGGCATTCTGTCCACCTCC | alignment | plot | GSM458931-2730 | VIT_01s0010g03730.t01 cdna:novel chromosome:IGGP_12x:1:21087951:21095392:1 gene:VIT_01s0010g03730 transcript:VIT_01s0010g03730.t | 1 | 1209 | 0 | 2 | 2 | 1 | 5' TTGGCATTCTGTCCACCTCC 3' ||||||||||||| |||||| 3' TACAAACCGTAAGACAGTTGGAGGAAGGTGTT 5' |
1952 | Vitis vinifera | GGCATGTGTGGGGCATAATAG | alignment | plot | GSM458931-2730 | VIT_09s0070g00320.t01 cdna:novel chromosome:IGGP_12x:9:13450437:13452476:1 gene:VIT_09s0070g00320 transcript:VIT_09s0070g00320.t | 1 | 1625 | 0.04 | 2 | 1 | 3.5 | 5' GGCATGTGTGGGGCATAATAG 3' || ||| |||||o||||| || 3' GCTTCCCTAC-CACCCTGTATTTTCTTTGAGA 5' |
1953 | Vitis vinifera | TGAATCTTGATGATGCTACAC | alignment | plot | GSM458931-2730 | VIT_01s0010g03600.t01 cdna:novel chromosome:IGGP_12x:1:20940834:20943043:1 gene:VIT_01s0010g03600 transcript:VIT_01s0010g03600.t | 1 | 715 | 0.01 | 2 | 2 | 3 | 5' TGAATCTTGATGATGCTACAC 3' |||||| |||||||| | ||| 3' TTAGACTTAG-ACTACTACTAAGTGGTCGTCT 5' |
1954 | Vitis vinifera | TGGAGAAGCAGGGCACGTGCA | alignment | plot | GSM458931-2730 | VIT_14s0108g01070.t01 cdna:novel chromosome:IGGP_12x:14:29705236:29707523:1 gene:VIT_14s0108g01070 transcript:VIT_14s0108g01070. | 1 | 826 | 0 | 2 | 2 | 2 | 5' TGGAGAAGCAGGGCACGTGCA 3' |||||||||||| |||||| | 3' ACCAACCTCTTCGTCCAGTGCAC-TCTGCTCA 5' |
1955 | Vitis vinifera | TTGACAGAAGATAGAGAGCAC | alignment | plot | GSM458931-2730 | VIT_01s0010g03710.t01 cdna:novel chromosome:IGGP_12x:1:21064260:21071687:-1 gene:VIT_01s0010g03710 transcript:VIT_01s0010g03710. | 1 | 1545 | 0 | 2 | 2 | 1 | 5' TTGACAGAAGATAGAGAGCAC 3' ||||||||||| ||||||||| 3' AAGCAACTGTCTTCTCTCTCTCGTGCTGCTTC 5' |
1956 | Vitis vinifera | TTGACAGAAGATAGAGAGCAC | alignment | plot | GSM458931-2730 | VIT_01s0010g03910.t01 cdna:novel chromosome:IGGP_12x:1:21412823:21416284:-1 gene:VIT_01s0010g03910 transcript:VIT_01s0010g03910. | 1 | 926 | 0 | 2 | 2 | 2 | 5' TTGACAGAAGATAGAGAGCAC 3' |||||||||| ||||||||| 3' CCGCTACTGTCTTCTCTCTCTCGTGCTAGTCT 5' |
1957 | Vitis vinifera | TCGGACCAGGCTTCATTCC | alignment | plot | GSM458931-2730 | VIT_04s0008g03250.t01 cdna:novel chromosome:IGGP_12x:4:2700630:2709554:-1 gene:VIT_04s0008g03250 transcript:VIT_04s0008g03250.t0 | 2 | 565 | 0 | 2 | 1 | 1 | 5' TCGGACCAGGCTTCATTCC 3' o|||||||||||||||o|| 3' CTTAGGCCTGGTCCGAAGTAGGGTCCGTAAAC 5' |
1958 | Vitis vinifera | TCGGACCAGGCTTCATTCCCC | alignment | plot | GSM458931-2730 | VIT_04s0008g03250.t01 cdna:novel chromosome:IGGP_12x:4:2700630:2709554:-1 gene:VIT_04s0008g03250 transcript:VIT_04s0008g03250.t0 | 2 | 565 | 0 | 2 | 1 | 2.5 | 5' TCGGACCAGGCTTCATTCCCC 3' o||||||||||||||| ||| 3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAAA 5' |
1959 | Vitis vinifera | TGCCTGGCTCCCTGTATGCCA | alignment | plot | GSM458931-2730 | VIT_13s0019g04380.t01 cdna:novel chromosome:IGGP_12x:13:5744428:5747932:-1 gene:VIT_13s0019g04380 transcript:VIT_13s0019g04380.t | 1 | 1518 | 0 | 2 | 2 | 1 | 5' TGCCTGGCTCCCTGTATGCCA 3' |||||||||||||||||||| 3' TCGTACGGACCGAGGGACATACGGACGTCCTT 5' |
1960 | Vitis vinifera | GCCTGGCTCCCCTGTATGCC | alignment | plot | GSM458931-2730 | VIT_13s0019g04380.t01 cdna:novel chromosome:IGGP_12x:13:5744428:5747932:-1 gene:VIT_13s0019g04380 transcript:VIT_13s0019g04380.t | 1 | 1518 | 0 | 2 | 2 | 1 | 5' GCCTGGCTCCCCTGTATGCC 3' |||||||| ||||||||||| 3' CGTACGGACCGA-GGGACATACGGACGTCCTT 5' |
1961 | Vitis vinifera | TGACAACGAGAGAGAGCACGC | alignment | plot | GSM458931-2730 | VIT_01s0010g03910.t01 cdna:novel chromosome:IGGP_12x:1:21412823:21416284:-1 gene:VIT_01s0010g03910 transcript:VIT_01s0010g03910. | 1 | 924 | 0.02 | 2 | 2 | 3 | 5' TGACA-ACGAGAGAGAGCACGC 3' ||||| | ||||||||||||| 3' GCTACTGTCTTCTCTCTCTCGTGCTAGTCTTG 5' |
1962 | Vitis vinifera | TCCAAAGGGATCGCATTGATC | alignment | plot | GSM458931-2730 | VIT_07s0104g01320.t01 cdna:novel chromosome:IGGP_12x:7:2351619:2357500:1 gene:VIT_07s0104g01320 transcript:VIT_07s0104g01320.t01 | 1 | 1518 | 0 | 2 | 2 | 1 | 5' TCCAAAGGGATCGCATTGATC 3' |||||||||||||||||| || 3' CTGTAGGTTTCCCTAGCGTAAC-AGAGGTCGA 5' |
1963 | Vitis vinifera | TTAGATTCACGCACAAACTCG | alignment | plot | GSM458931-2730 | VIT_10s0042g01150.t01 cdna:novel chromosome:IGGP_12x:10:15100682:15105025:1 gene:VIT_10s0042g01150 transcript:VIT_10s0042g01150. | 1 | 3103 | 0 | 2 | 1 | 1 | 5' TTAGATTCACGCACAAACTCG 3' |||||||||||||||||||| 3' GGGTAATCTAAGTGCGTGTTTGAGGAAATGAT 5' |
1964 | Vitis vinifera | TCTTTCCTACTCCTCCCATTCC | alignment | plot | GSM458931-2730 | VIT_18s0072g01090.t01 cdna:novel chromosome:IGGP_12x:18:20663924:20666589:1 gene:VIT_18s0072g01090 transcript:VIT_18s0072g01090. | 1 | 236 | 0 | 2 | 2 | 1.5 | 5' TCTTTCCTACTCCTCCCATTCC 3' ||||||||||o||||| ||||| 3' TTTTAGAAAGGATGGGGAGGATAAGGTAAGTA 5' |
1965 | Vitis vinifera | TGACAGAGGAGAGTGAGCAC | alignment | plot | GSM458931-2730 | VIT_01s0010g03910.t01 cdna:novel chromosome:IGGP_12x:1:21412823:21416284:-1 gene:VIT_01s0010g03910 transcript:VIT_01s0010g03910. | 1 | 925 | 0.01 | 2 | 2 | 1.5 | 5' TGACAGAGGAGAGTGAGCAC 3' |||||||o||||| |||||| 3' CGCTACTGTCTTCTCTCTCTCGTGCTAGTCTT 5' |
1966 | Vitis vinifera | TTTCCGACTCGCACTCATGCCGT | alignment | plot | GSM458931-2730 | VIT_19s0085g00460.t01 cdna:novel chromosome:IGGP_12x:19:22836679:22837347:1 gene:VIT_19s0085g00460 transcript:VIT_19s0085g00460. | 1 | 458 | 0 | 2 | 1 | 2.5 | 5' TTTCCGACTCGCACTCATGCCGT 3' |||||||||| |||| |||||o| 3' GGAAAAAGGCTGAG-GTGAATACGGTACTATA 5' |
1967 | Vitis vinifera | TTGACAGAAGATAGAGAGCAC | alignment | plot | GSM458931-2730 | VIT_11s0065g00170.t01 cdna:novel chromosome:IGGP_12x:11:13588641:13607268:-1 gene:VIT_11s0065g00170 transcript:VIT_11s0065g00170 | 1 | 1160 | 0 | 2 | 2 | 1 | 5' TTGACAGAAGATAGAGAGCAC 3' ||||||||||| ||||||||| 3' AATCAACTGTCTTCTCTCTCTCGTGCGGCCTT 5' |
1968 | Vitis vinifera | TCTTGCTCAAATGAGTGTTCCA | alignment | plot | GSM458931-2730 | VIT_00s0341g00050.t01 cdna:novel chromosome:IGGP_12x:Un:24415587:24430691:-1 gene:VIT_00s0341g00050 transcript:VIT_00s0341g00050 | 1 | 1127 | 0 | 2 | 2 | 1.5 | 5' TCTTGCTCAAATGAGTGTTCCA 3' ||||||||||||||| o||||| 3' TCAAAGAACGAGTTTACTCTTAAGGTCATCAA 5' |
1969 | Vitis vinifera | TTTGGATTGAAGGGAGCTC | alignment | plot | GSM458931-2730 | VIT_13s0067g01630.t01 cdna:novel chromosome:IGGP_12x:13_random:914710:922589:-1 gene:VIT_13s0067g01630 transcript:VIT_13s0067g01 | 1 | 1381 | 0.03 | 2 | 2 | 2 | 5' TTTGGATTGAAGGGAGCTC 3' ||||| |||||||||||| 3' TCTATAACCTCACTTCCCTCGAGGTTGAAGTG 5' |
1970 | Vitis vinifera | CTTGGAGTGAAGGGAGCTCTC | alignment | plot | GSM458931-2730 | VIT_13s0067g01630.t01 cdna:novel chromosome:IGGP_12x:13_random:914710:922589:-1 gene:VIT_13s0067g01630 transcript:VIT_13s0067g01 | 1 | 1381 | 0 | 2 | 2 | 2 | 5' CTTGGAGTGAAGGGAGCTCTC 3' |||||||||||||||||| | 3' TCTATAACCTCACTTCCCTCGAG-GTTGAAGT 5' |
1971 | Vitis vinifera | AAGCTCAGGAGGGATAGCGCC | alignment | plot | GSM458931-2730 | VIT_12s0059g01410.t01 cdna:novel chromosome:IGGP_12x:12:6340188:6340705:1 gene:VIT_12s0059g01410 transcript:VIT_12s0059g01410.t0 | 1 | 211 | 0 | 2 | 2 | 1.5 | 5' AAGCTCAGGAGGGATAGCGCC 3' |||||||||||o|||| |||| 3' CTGATTCGAGTCCTCTCTATAGCGGAATGGGA 5' |
1972 | Vitis vinifera | TCTTGCTCAAATGAGTGTTCCA | alignment | plot | GSM458931-2730 | VIT_17s0000g08480.t01 cdna:novel chromosome:IGGP_12x:17:9703427:9704324:-1 gene:VIT_17s0000g08480 transcript:VIT_17s0000g08480.t | 1 | 319 | 0 | 2 | 2 | 1 | 5' TCTTGCTCAAATGAGTGTTCCA 3' | |||||||||||||||||||| 3' TCGAAAAACGAGTTTACTCACAAGGTTACCAA 5' |
1973 | Vitis vinifera | TAGCCAAGGATGACTTGCCTG | alignment | plot | GSM458931-2730 | VIT_06s0004g02270.t01 cdna:novel chromosome:IGGP_12x:6:2680757:2687576:1 gene:VIT_06s0004g02270 transcript:VIT_06s0004g02270.t01 | 0 | 1146 | 0 | 2 | 2 | 3.5 | 5' TAGCCAAGGATGACTTGCCTG 3' |||||||o|||| ||||| | 3' TCGTTTCGGTTCTTACTAAACGG-CGGGTCGT 5' |
1974 | Vitis vinifera | GAGCCAAGGATGACTTGCCGT | alignment | plot | GSM458931-2730 | VIT_06s0004g02270.t01 cdna:novel chromosome:IGGP_12x:6:2680757:2687576:1 gene:VIT_06s0004g02270 transcript:VIT_06s0004g02270.t01 | 0 | 1146 | 0 | 2 | 2 | 2.5 | 5' GAGCCAAGGATGACTTGCCGT 3' o|||||||o|||| ||||||o 3' TCGTTTCGGTTCTTACTAAACGGCGGGTCGTT 5' |
1975 | Vitis vinifera | TGGTTGAGCCGCGCCAATATC | alignment | plot | GSM458931-2730 | VIT_04s0023g01380.t01 cdna:novel chromosome:IGGP_12x:4:17877548:17879580:-1 gene:VIT_04s0023g01380 transcript:VIT_04s0023g01380. | 1 | 667 | 0 | 2 | 2 | 0.5 | 5' TGGTTGAGCCGCGCCAATATC 3' ||o|||||||||||||||||| 3' GGCAACTAACTCGGCGCGGTTATAGCGGACTC 5' |
1976 | Vitis vinifera | CTTCTTCCTCTTCCTCTTCGG | alignment | plot | GSM458931-2730 | VIT_08s0007g02200.t01 cdna:novel chromosome:IGGP_12x:8:16234222:16238500:1 gene:VIT_08s0007g02200 transcript:VIT_08s0007g02200.t | 2 | 522 | 0.02 | 2 | 1.33333 | 2.5 | 5' CTTCTTCCTCTTCCTCTTCGG 3' |o||o|||||||||||o|| | 3' AGGAGGAGGAGGAGAAGGAGGAGACGTGAGAG 5' |
1977 | Vitis vinifera | TGGATGCAGCGGTTCATCGAT | alignment | plot | GSM458931-2730 | VIT_06s0004g04230.t01 cdna:novel chromosome:IGGP_12x:6:5187608:5188059:1 gene:VIT_06s0004g04230 transcript:VIT_06s0004g04230.t01 | 2 | 266 | 0.02 | 2 | 1 | 4 | 5' TGGATGCAGCGGTTCATCGAT 3' | |||| ||| |||||| ||| 3' CAGCAACTACTTCGACAAGTA-CTAGGGGTAC 5' |
1978 | Vitis vinifera | TTGGACTGAAGGGAGCTCC | alignment | plot | GSM458931-2730 | VIT_10s0003g03910.t01 cdna:novel chromosome:IGGP_12x:10:6666005:6668779:-1 gene:VIT_10s0003g03910 transcript:VIT_10s0003g03910.t | 1 | 1795 | 0.03 | 2 | 2 | 2.5 | 5' TTGGACTGAAGGGAGCTCC 3' ||||||||||||| |o|| 3' TCTTAACCTGACTTCCCAGGGGGATAACTTTG 5' |
1979 | Vitis vinifera | TTGGACTGAAGGGAGCTCCCT | alignment | plot | GSM458931-2730 | VIT_10s0003g03910.t01 cdna:novel chromosome:IGGP_12x:10:6666005:6668779:-1 gene:VIT_10s0003g03910 transcript:VIT_10s0003g03910.t | 1 | 1795 | 0.02 | 2 | 2 | 3 | 5' TTGGACTGAAGGGAGCTCCCT 3' ||||||||||||| | |||| 3' TCTTAACCTGACTTCCCAGG-GGGATAACTTT 5' |
1980 | Vitis vinifera | GGAATCTTGATGATGCTGCAG | alignment | plot | GSM458931-2730 | VIT_19s0014g04590.t01 cdna:novel chromosome:IGGP_12x:19:4900009:4902808:-1 gene:VIT_19s0014g04590 transcript:VIT_19s0014g04590.t | 2 | 465 | 0.01 | 2 | 0.4 | 3.5 | 5' GGAATCTTGATGATGCTGCAG 3' ||||||||||||| | |o || 3' CAGACCTTAGAACTACTTCTATTTCTTCCGGA 5' |
1981 | Vitis vinifera | TCGGACCAGGCTTCATTCC | alignment | plot | GSM458931-2730 | VIT_13s0019g04320.t01 cdna:novel chromosome:IGGP_12x:13:5642849:5655110:1 gene:VIT_13s0019g04320 transcript:VIT_13s0019g04320.t0 | 1 | 580 | 0 | 2 | 2 | 1 | 5' TCGGACCAGGCTTCATTCC 3' o|||||||||||||||o|| 3' CTTAGGCCTGGTCCGAAGTAGGGTCCTTAGAC 5' |
1982 | Vitis vinifera | TCGGACCAGGCTTCATTCCCC | alignment | plot | GSM458931-2730 | VIT_13s0019g04320.t01 cdna:novel chromosome:IGGP_12x:13:5642849:5655110:1 gene:VIT_13s0019g04320 transcript:VIT_13s0019g04320.t0 | 1 | 580 | 0 | 2 | 2 | 2.5 | 5' TCGGACCAGGCTTCATTCCCC 3' o||||||||||||||| ||| 3' CTTAGGCCTGGTCCGAAGTA-GGGTCCTTAGA 5' |
1983 | Vitis vinifera | ATGCACTGCCTCTTCCCTGGC | alignment | plot | GSM458931-2730 | VIT_05s0020g03180.t01 cdna:novel chromosome:IGGP_12x:5:4942932:4943720:1 gene:VIT_05s0020g03180 transcript:VIT_05s0020g03180.t01 | 1 | 433 | 0.05 | 2 | 2 | 3.5 | 5' ATGCACTGCCTCTTCCCTGGC 3' | |||||| |||o| |||||| 3' GCGGTTCGTGAC-GAGGAAGGACCGGTTGAAC 5' |
1984 | Vitis vinifera | TTAGATTCACGCACAAACTCG | alignment | plot | GSM458931-2730 | VIT_10s0042g01180.t01 cdna:novel chromosome:IGGP_12x:10:15146895:15151231:1 gene:VIT_10s0042g01180 transcript:VIT_10s0042g01180. | 2 | 2989 | 0 | 2 | 1 | 1 | 5' TTAGATTCACGCACAAACTCG 3' |||||||||||||||||||| 3' GGGTAATCTAAGTGCGTGTTTGAGGAAATGAT 5' |
1985 | Vitis vinifera | TTGAGCCGTGCCAATATCATG | alignment | plot | GSM458931-2730 | VIT_15s0048g00270.t01 cdna:novel chromosome:IGGP_12x:15:14396828:14399794:-1 gene:VIT_15s0048g00270 transcript:VIT_15s0048g00270 | 1 | 1588 | 0.02 | 2 | 2 | 3 | 5' TTGAGCCGTGCCAATATCATG 3' ||||||||o||||||||| o 3' CACTAACTCGGCGCGGTTATAGGGAACGCGCT 5' |
1986 | Vitis vinifera | TTGACAGAAGATAGAGAGCAC | alignment | plot | GSM458931-2730 | VIT_12s0028g03350.t01 cdna:novel chromosome:IGGP_12x:12:4108335:4110142:-1 gene:VIT_12s0028g03350 transcript:VIT_12s0028g03350.t | 1 | 624 | 0.02 | 2 | 2 | 3 | 5' TTGACAGAAGATAGAGAGCAC 3' |||||||||| |||||||| 3' GTGTTACTGTCTTCTCTCTCTCGTACGACCAC 5' |
1987 | Vitis vinifera | TTCCACAGCTTTCTTGAACT | alignment | plot | GSM458931-2730 | VIT_09s0002g01350.t01 cdna:novel chromosome:IGGP_12x:9:1135177:1136542:1 gene:VIT_09s0002g01350 transcript:VIT_09s0002g01350.t01 | 0 | 406 | 0 | 2 | 2 | 2 | 5' TTCCACA-GCTTTCTTGAACT 3' ||||||| |||||||||||| 3' TTGAAGGTGTCCGAAAGAACTTGCCAAAAACG 5' |
1988 | Vitis vinifera | CAGCATCATCAAGATTCCCAC | alignment | plot | GSM458931-2730 | VIT_05s0020g00670.t01 cdna:novel chromosome:IGGP_12x:5:2540079:2542121:1 gene:VIT_05s0020g00670 transcript:VIT_05s0020g00670.t01 | 2 | 817 | 0.02 | 2 | 1.5 | 3.5 | 5' CAGCATCATCAAGATTCCCAC 3' ||||||||o|| || ||||| 3' TCTGGTCGTAGTGGTACTCCGGGTGGTTAGTG 5' |
1989 | Vitis vinifera | TAGCCAAGGATGACTTGCCTG | alignment | plot | GSM458931-2730 | VIT_08s0007g08250.t01 cdna:novel chromosome:IGGP_12x:8:21597124:21603336:1 gene:VIT_08s0007g08250 transcript:VIT_08s0007g08250.t | 1 | 1513 | 0 | 2 | 2 | 2.5 | 5' TAGCCAAGGATGACTTGCCTG 3' |||||||o|||| ||||||| 3' TATGTTCGGTTCTTACTAAACGGACTTTTATG 5' |
1990 | Vitis vinifera | GAGCCAAGGATGACTTGCCGT | alignment | plot | GSM458931-2730 | VIT_08s0007g08250.t01 cdna:novel chromosome:IGGP_12x:8:21597124:21603336:1 gene:VIT_08s0007g08250 transcript:VIT_08s0007g08250.t | 1 | 1513 | 0 | 2 | 2 | 3 | 5' GAGCCAAGGATGACTTGCCGT 3' o|||||||o|||| ||||| | 3' TATGTTCGGTTCTTACTAAACGG-ACTTTTAT 5' |
1991 | Vitis vinifera | TGACAACGAGAGAGAGCACGC | alignment | plot | GSM458931-2730 | VIT_12s0028g03350.t01 cdna:novel chromosome:IGGP_12x:12:4108335:4110142:-1 gene:VIT_12s0028g03350 transcript:VIT_12s0028g03350.t | 1 | 622 | 0 | 2 | 2 | 3 | 5' TGACA-ACGAGAGAGAGCACGC 3' ||||| | ||||||||||| || 3' GTTACTGTCTTCTCTCTCTCGTACGACCACCC 5' |
1992 | Vitis vinifera | TGGAGAAGCAGGGCACGTGCA | alignment | plot | GSM458931-2730 | VIT_19s0027g00230.t01 cdna:novel chromosome:IGGP_12x:19:18785292:18790096:-1 gene:VIT_19s0027g00230 transcript:VIT_19s0027g00230 | 1 | 638 | 0 | 2 | 2 | 2.5 | 5' TGGAGAAGCAGGGCACGTGCA 3' o||||||||||||||| ||| 3' TATAGCCTCTTCGTCCCGTGAACGAGTATAAG 5' |
1993 | Vitis vinifera | TTGACAGAAGATAGAGAGCAC | alignment | plot | GSM458931-2730 | VIT_10s0003g00050.t01 cdna:novel chromosome:IGGP_12x:10:1346397:1348736:1 gene:VIT_10s0003g00050 transcript:VIT_10s0003g00050.t0 | 1 | 579 | 0 | 2 | 2 | 2 | 5' TTGACAGAAGATAGAGAGCAC 3' ||||||| |||||||||||| 3' CTCTAACTGTCCTCTATCTCTCGTATGATCTA 5' |
1994 | Vitis vinifera | TGCCTGGCTCCCTGTATGCCA | alignment | plot | GSM458931-2730 | VIT_08s0040g01810.t01 cdna:novel chromosome:IGGP_12x:8:12924098:12929097:1 gene:VIT_08s0040g01810 transcript:VIT_08s0040g01810.t | 2 | 2138 | 0 | 2 | 1 | 0.5 | 5' TGCCTGGCTCCCTGTATGCCA 3' ||||||||||||||o|||||| 3' TCGTACGGACCGAGGGACGTACGGTCGTCCTT 5' |
1995 | Vitis vinifera | GCCTGGCTCCCCTGTATGCC | alignment | plot | GSM458931-2730 | VIT_08s0040g01810.t01 cdna:novel chromosome:IGGP_12x:8:12924098:12929097:1 gene:VIT_08s0040g01810 transcript:VIT_08s0040g01810.t | 2 | 2138 | 0 | 2 | 1 | 1.5 | 5' GCCTGGCTCCCCTGTATGCC 3' |||||||| |||||o||||| 3' CGTACGGACCGA-GGGACGTACGGTCGTCCTT 5' |
1996 | Vitis vinifera | TGACAGAAGATAGAGAGCAC | alignment | plot | GSM458931-2730 | VIT_10s0003g00050.t01 cdna:novel chromosome:IGGP_12x:10:1346397:1348736:1 gene:VIT_10s0003g00050 transcript:VIT_10s0003g00050.t0 | 1 | 578 | 0 | 2 | 2 | 2 | 5' TGACAGAAGATAGAGAGCAC 3' |||||| |||||||||||| 3' TCTAACTGTCCTCTATCTCTCGTATGATCTAT 5' |
1997 | Vitis vinifera | TGACAGAGGAGAGTGAGCAC | alignment | plot | GSM458931-2730 | VIT_12s0028g03350.t01 cdna:novel chromosome:IGGP_12x:12:4108335:4110142:-1 gene:VIT_12s0028g03350 transcript:VIT_12s0028g03350.t | 1 | 623 | 0.01 | 2 | 2 | 2.5 | 5' TGACAGAGGAGAGTGAGCAC 3' |||||||o||||| ||||| 3' TGTTACTGTCTTCTCTCTCTCGTACGACCACC 5' |
1998 | Vitis vinifera | TTGGACTGAAGGGAGCTCCT | alignment | plot | GSM458931-2730 | VIT_19s0014g01680.t01 cdna:novel chromosome:IGGP_12x:19:1805453:1807492:1 gene:VIT_19s0014g01680 transcript:VIT_19s0014g01680.t0 | 1 | 1092 | 0.01 | 2 | 2 | 3 | 5' TTGGACTGAAGGGAGCTCCT 3' o|||||||||||| |o||| 3' CAACGACCTGACTTCCCCAGGGGAGACTCTTA 5' |
1999 | Vitis vinifera | TTGGACTGAAGGGAGCTCCCT | alignment | plot | GSM458931-2730 | VIT_19s0014g01680.t01 cdna:novel chromosome:IGGP_12x:19:1805453:1807492:1 gene:VIT_19s0014g01680 transcript:VIT_19s0014g01680.t0 | 1 | 1092 | 0.03 | 2 | 2 | 3.5 | 5' TTGGACTGAAGGGAGCTCCCT 3' o|||||||||||| | |||| 3' CAACGACCTGACTTCCCCAG-GGGAGACTCTT 5' |
2000 | Vitis vinifera | TTCCACAGCTTTCTTGAACT | alignment | plot | GSM458931-2730 | VIT_02s0025g04910.t01 cdna:novel chromosome:IGGP_12x:2:4421526:4422809:1 gene:VIT_02s0025g04910 transcript:VIT_02s0025g04910.t01 | 1 | 580 | 0.01 | 2 | 2 | 2 | 5' TTCCACA-GCTTTCTTGAACT 3' ||||||| |||||||||||| 3' TCGAAGGTGTACGAAAGAACTTGCGACTGCCG 5' |
2001 | Vitis vinifera | TGGAGAAGCAGGGCACGTGCA | alignment | plot | GSM458931-2730 | VIT_17s0000g06400.t01 cdna:novel chromosome:IGGP_12x:17:6977372:6979197:1 gene:VIT_17s0000g06400 transcript:VIT_17s0000g06400.t0 | 1 | 939 | 0 | 2 | 2 | 1 | 5' TGGAGAAGCAGGGCACGTGCA 3' ||||||||||||||||||| | 3' CCCAACCTCTTCGTCCCGTGCAC-TCCACTAA 5' |
2002 | Vitis vinifera | TGGAGAAGCAGGGCACATGCT | alignment | plot | GSM458931-2730 | VIT_17s0000g06400.t01 cdna:novel chromosome:IGGP_12x:17:6977372:6979197:1 gene:VIT_17s0000g06400 transcript:VIT_17s0000g06400.t0 | 1 | 939 | 0.02 | 2 | 2 | 3 | 5' TGGAGAAGCAGGGCACATGCT 3' |||||||||||||||| || 3' CCCAACCTCTTCGTCCCGTGCACTCCACTAAC 5' |
2003 | Vitis vinifera | TCTTGCTCAAATGAGTGTTCCA | alignment | plot | GSM458931-2730 | VIT_14s0066g01220.t01 cdna:novel chromosome:IGGP_12x:14:27708124:27709246:-1 gene:VIT_14s0066g01220 transcript:VIT_14s0066g01220 | 1 | 319 | 0.01 | 2 | 2 | 1 | 5' TCTTGCTCAAATGAGTGTTCCA 3' | |||||||||||||||||||| 3' TCGAAAAACGAGTTTACTCACAAGGTCATCAA 5' |
2004 | Vitis vinifera | TGTGGTATTGGTTCGGCTCATC | alignment | plot | GSM458931-2730 | VIT_17s0000g08890.t01 cdna:novel chromosome:IGGP_12x:17:10362993:10368115:1 gene:VIT_17s0000g08890 transcript:VIT_17s0000g08890. | 1 | 2414 | 0.02 | 2 | 2 | 3.5 | 5' TGTGGTATTGGTTCGGCTCATC 3' |||||o|||| || |||| ||| 3' GACGACACCGTAAC-AACCCGACTAGACCTTT 5' |
2005 | Vitis vinifera | GAGCCAAGGATGACTTGCCGG | alignment | plot | GSM458931-2730 | VIT_01s0011g05560.t01 cdna:novel chromosome:IGGP_12x:1:5284036:5288161:-1 gene:VIT_01s0011g05560 transcript:VIT_01s0011g05560.t0 | 1 | 1158 | 0.05 | 2 | 2 | 3.5 | 5' GAGCCAAGGATGACTTGCCGG 3' |||||||||||| |||| o| 3' TTGGCTCGGTTCCTACGAAACGCTCGAACTCC 5' |
2006 | Vitis vinifera | TGAGCCAAGGATGGCTTGCCG | alignment | plot | GSM458931-2730 | VIT_01s0011g05560.t01 cdna:novel chromosome:IGGP_12x:1:5284036:5288161:-1 gene:VIT_01s0011g05560 transcript:VIT_01s0011g05560.t0 | 1 | 1159 | 0.04 | 2 | 2 | 3.5 | 5' TGAGCCAAGGATGGCTTGCCG 3' o|||||||||||| |||| | 3' TTTGGCTCGGTTCCTACGAAACG-CTCGAACT 5' |
2007 | Vitis vinifera | TGAAGCTGCCAGCATGATCTG | alignment | plot | GSM458931-2730 | VIT_04s0079g00200.t01 cdna:novel chromosome:IGGP_12x:4:10432267:10448180:1 gene:VIT_04s0079g00200 transcript:VIT_04s0079g00200.t | 2 | 1883 | 0 | 2 | 1.33333 | 4 | 5' TGAAGCTGCCAGCATGATCTG 3' ||||||||||| |||||| 3' TTTATGTTCGACGGTCGGACTAGAGTCTCCCA 5' |
2008 | Vitis vinifera | TAGCGAAGGATGACTTGCCTA | alignment | plot | GSM458931-2730 | VIT_11s0016g01480.t01 cdna:novel chromosome:IGGP_12x:11:1176254:1181820:1 gene:VIT_11s0016g01480 transcript:VIT_11s0016g01480.t0 | 1 | 1250 | 0.03 | 2 | 2 | 3.5 | 5' TAGCGAAGGATGACTTGCCTA 3' ||| |||||||| |||||o| 3' TTGTTTCGGTTCCTACTTAACGGGTCTGGTCA 5' |
2009 | Vitis vinifera | TGCCTGGCTCCCTGTATGCCA | alignment | plot | GSM458931-2730 | VIT_06s0004g02750.t01 cdna:novel chromosome:IGGP_12x:6:3443777:3447902:1 gene:VIT_06s0004g02750 transcript:VIT_06s0004g02750.t01 | 2 | 1332 | 0 | 2 | 1 | 1 | 5' TGCCTGGCTCCCTGTATGCCA 3' |||||||||||||||||||| 3' TCGTACGGACCGAGGGACATACGGACGTCCTC 5' |
2010 | Vitis vinifera | GCCTGGCTCCCCTGTATGCC | alignment | plot | GSM458931-2730 | VIT_06s0004g02750.t01 cdna:novel chromosome:IGGP_12x:6:3443777:3447902:1 gene:VIT_06s0004g02750 transcript:VIT_06s0004g02750.t01 | 2 | 1332 | 0 | 2 | 1 | 1 | 5' GCCTGGCTCCCCTGTATGCC 3' |||||||| ||||||||||| 3' CGTACGGACCGA-GGGACATACGGACGTCCTC 5' |
2011 | Vitis vinifera | TTCCACAGCTTTCTTGAACT | alignment | plot | GSM458931-2730 | VIT_16s0098g01080.t01 cdna:novel chromosome:IGGP_12x:16:21346622:21349185:-1 gene:VIT_16s0098g01080 transcript:VIT_16s0098g01080 | 1 | 692 | 0 | 2 | 2 | 2 | 5' TTCCACA-GCTTTCTTGAACT 3' ||||||| |||||||||||| 3' TTGAAGGTGTCCGAAAGAACTTGCCCCAGCCG 5' |
2012 | Vitis vinifera | TTGACAGAAGATAGAGAGCAC | alignment | plot | GSM458931-2730 | VIT_01s0011g00130.t01 cdna:novel chromosome:IGGP_12x:1:231616:236216:1 gene:VIT_01s0011g00130 transcript:VIT_01s0011g00130.t01 | 1 | 1093 | 0 | 2 | 2 | 1.5 | 5' TTGACAGAAGATAGAGAGCAC 3' o|||||||||| ||||||||| 3' ACTCGACTGTCTTCTCTCTCTCGTGTTAACCT 5' |
2013 | Vitis vinifera | GGCATGTGTGGGGCATAATAG | alignment | plot | GSM458931-2730 | VIT_02s0033g01110.t01 cdna:novel chromosome:IGGP_12x:2:16327359:16335347:1 gene:VIT_02s0033g01110 transcript:VIT_02s0033g01110.t | 2 | 869 | 0 | 2 | 1 | 3.5 | 5' GGCATGTGTGGGGCATAATAG 3' || ||| |||||o||||| || 3' GCTTCCCTAC-CACCCTGTATTTTCGTTGAGA 5' |
2014 | Vitis vinifera | CTTGGAGTGAAGGGAGCTCTC | alignment | plot | GSM458931-2730 | VIT_03s0038g01150.t01 cdna:novel chromosome:IGGP_12x:3:880653:881315:-1 gene:VIT_03s0038g01150 transcript:VIT_03s0038g01150.t01 | 1 | 241 | 0.04 | 2 | 2 | 3.5 | 5' CTTGGAGTGAAGGGAGCTCTC 3' |||||o||||||| ||| || 3' TTCGAAACCTTACTTCCCACGA-AGTTCATAC 5' |
2015 | Vitis vinifera | TTTCCCAGACCCCCAATACCAA | alignment | plot | GSM458931-2730 | VIT_12s0028g00710.t01 cdna:novel chromosome:IGGP_12x:12:1264959:1267086:-1 gene:VIT_12s0028g00710 transcript:VIT_12s0028g00710.t | 2 | 1380 | 0.01 | 2 | 1 | 4 | 5' TTTCCCAGACCCCCAATACCAA 3' |||||||o|||| | |o||| | 3' ACGGAAAGGGTTTGGGAGGTGTGGGTGGGAAG 5' |
2016 | Vitis vinifera | TTCCACAGCTTTCTTGAACT | alignment | plot | GSM458931-2730 | VIT_16s0039g01450.t01 cdna:novel chromosome:IGGP_12x:16:975988:979958:1 gene:VIT_16s0039g01450 transcript:VIT_16s0039g01450.t01 | 1 | 398 | 0 | 2 | 2 | 2 | 5' TTCCACA-GCTTTCTTGAACT 3' ||||||| |||||||||||| 3' ACTAAGGTGTCCGAAAGAACTTGCCAACGCCG 5' |
2017 | Vitis vinifera | GAATCTTGATGATGCTCCATC | alignment | plot | GSM458931-2730 | VIT_19s0177g00100.t01 cdna:novel chromosome:IGGP_12x:19:5929703:5931655:1 gene:VIT_19s0177g00100 transcript:VIT_19s0177g00100.t0 | 1 | 424 | 0.03 | 2 | 2 | 3 | 5' GAATCTTGATGATGCTCCATC 3' |||||||||| || |||| || 3' GGTACTTAGAACTA-TAGGAGGAAGAAGTGTT 5' |
2018 | Vitis vinifera | TTCCACAGCTTTCTTGAACT | alignment | plot | GSM458931-2730 | VIT_02s0012g02250.t01 cdna:novel chromosome:IGGP_12x:2:9137736:9153313:-1 gene:VIT_02s0012g02250 transcript:VIT_02s0012g02250.t0 | 1 | 139 | 0.04 | 2 | 2 | 2 | 5' TTCCACAGCTTTCTTGAACT 3' |||||||o||||||oo|||o 3' GTGGAAGGTGTTGAAAGAGTTTGGTAAGGTTT 5' |
2019 | Vitis vinifera | TCGGACCAGGCTTCATTCC | alignment | plot | GSM458931-2730 | VIT_06s0004g02800.t01 cdna:novel chromosome:IGGP_12x:6:3508029:3516493:-1 gene:VIT_06s0004g02800 transcript:VIT_06s0004g02800.t0 | 1 | 579 | 0 | 2 | 2 | 1 | 5' TCGGACCAGGCTTCATTCC 3' o|||||||||||||||o|| 3' CTTAGGCCTGGTCCGAAGTAGGGTCCGTAGAC 5' |
2020 | Vitis vinifera | TCGGACCAGGCTTCATTCCCC | alignment | plot | GSM458931-2730 | VIT_06s0004g02800.t01 cdna:novel chromosome:IGGP_12x:6:3508029:3516493:-1 gene:VIT_06s0004g02800 transcript:VIT_06s0004g02800.t0 | 1 | 579 | 0.01 | 2 | 2 | 2.5 | 5' TCGGACCAGGCTTCATTCCCC 3' o||||||||||||||| ||| 3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAGA 5' |
2021 | Vitis vinifera | GGCTGCTGAGAAAATGTAGGA | alignment | plot | GSM458931-2730 | VIT_07s0031g01230.t01 cdna:novel chromosome:IGGP_12x:7:17320663:17322941:1 gene:VIT_07s0031g01230 transcript:VIT_07s0031g01230.t | 1 | 65 | 0 | 2 | 2 | 1 | 5' GGCTGCTGAGAAAATGTAGGA 3' |||||||||||||||| |||| 3' CAAACCGACGACTCTTTTAC-TCCTGCTTCCC 5' |
2022 | Vitis vinifera | TTTCCCAGACCCCCAATACCAA | alignment | plot | GSM458931-2730 | VIT_02s0012g01990.t01 cdna:novel chromosome:IGGP_12x:2:8633024:8634459:-1 gene:VIT_02s0012g01990 transcript:VIT_02s0012g01990.t0 | 1 | 621 | 0.03 | 2 | 1 | 4 | 5' TTTCCCAGACCCCCAATACCAA 3' |||||||o|||| | |o||| | 3' ACGGAAAGGGTTTGGGAGGTGTGGGTTGGTGG 5' |
2023 | Vitis vinifera | TCGGACCAGGCTTCATTCC | alignment | plot | GSM458931-2730 | VIT_09s0002g03740.t01 cdna:novel chromosome:IGGP_12x:9:3414759:3424840:-1 gene:VIT_09s0002g03740 transcript:VIT_09s0002g03740.t0 | 2 | 1110 | 0 | 2 | 1 | 0.5 | 5' TCGGACCAGGCTTCATTCC 3' o|||||||||||||||||| 3' CTTAGGCCTGGTCCGAAGTAAGGTCCGTAAAC 5' |
2024 | Vitis vinifera | TCTTGCTCAAATGAGTGTTCCA | alignment | plot | GSM458931-2730 | VIT_09s0002g01380.t01 cdna:novel chromosome:IGGP_12x:9:1161830:1162708:1 gene:VIT_09s0002g01380 transcript:VIT_09s0002g01380.t01 | 1 | 411 | 0 | 2 | 2 | 1.5 | 5' TCTTGCTCAAATGAGTGTTCCA 3' ||||||||||||||| o||||| 3' TAAAAGAACGAGTTTACTCTTAAGGTCATCAA 5' |
2025 | Vitis vinifera | TTCCACAGCTTTCTTGAACT | alignment | plot | GSM458931-2730 | VIT_02s0025g02680.t01 cdna:novel chromosome:IGGP_12x:2:2331487:2332154:1 gene:VIT_02s0025g02680 transcript:VIT_02s0025g02680.t01 | 0 | 325 | 0 | 2 | 2 | 2 | 5' TTCCACA-GCTTTCTTGAACT 3' ||||||| |||||||||||| 3' GTTAAGGTGTCCGAAAGAACTTGCCCCAGCCG 5' |
2026 | Vitis vinifera | TTCCACAGCTTTCTTGAACT | alignment | plot | GSM458931-2730 | VIT_11s0016g01250.t01 cdna:novel chromosome:IGGP_12x:11:1000358:1001752:1 gene:VIT_11s0016g01250 transcript:VIT_11s0016g01250.t0 | 0 | 354 | 0 | 2 | 2 | 2 | 5' TTCCACA-GCTTTCTTGAACT 3' ||||||| |||||||||||| 3' TTGAAGGTGTCCGAAAGAACTTGCCAAAGACG 5' |
2027 | Vitis vinifera | TTGGATTGAAGGGAGCTCTA | alignment | plot | GSM458931-2730 | VIT_18s0001g08020.t01 cdna:novel chromosome:IGGP_12x:18:6473675:6486586:1 gene:VIT_18s0001g08020 transcript:VIT_18s0001g08020.t0 | 1 | 1433 | 0.05 | 2 | 2 | 3 | 5' TTGGATTGAAGGGAGCT-CTA 3' o||o||||||||||o|| |o| 3' TTACGACTTAACTTCCCTTGACGGTGTAGGTT 5' |
2028 | Vitis vinifera | TTGACAGAAGATAGAGAGCAC | alignment | plot | GSM458931-2730 | VIT_17s0000g05020.t01 cdna:novel chromosome:IGGP_12x:17:5506041:5513173:1 gene:VIT_17s0000g05020 transcript:VIT_17s0000g05020.t0 | 0 | 1567 | 0 | 2 | 2 | 2 | 5' TTGACAGAAGATAGAGAGCAC 3' |||||||||| ||||||||| 3' ACTCTACTGTCTTCTCTCTCTCGTGCTGGTCT 5' |
2029 | Vitis vinifera | TCCAAAGGGATCGCATTGATC | alignment | plot | GSM458931-2730 | VIT_14s0030g01240.t01 cdna:novel chromosome:IGGP_12x:14:5731297:5735020:1 gene:VIT_14s0030g01240 transcript:VIT_14s0030g01240.t0 | 1 | 1860 | 0 | 2 | 2 | 1 | 5' TCCAAAGGGATCGCATTGATC 3' |||||||||||||||||| || 3' CTGTAGGTTTCCCTAGCGTAAC-AGAGGTCGA 5' |
2030 | Vitis vinifera | TTCCACAGCTTTCTTGAACT | alignment | plot | GSM458931-2730 | VIT_07s0191g00220.t01 cdna:novel chromosome:IGGP_12x:7:15016666:15018416:-1 gene:VIT_07s0191g00220 transcript:VIT_07s0191g00220. | 1 | 504 | 0.05 | 2 | 2 | 2.5 | 5' TTCCACAGCTTTCTTGAACT 3' |||||||||||o||||| | 3' AACAAAGGTGTCGAAGGAACTCAAAACGGAGG 5' |
2031 | Vitis vinifera | CTTGGAGTGAAGGGAGCTCTC | alignment | plot | GSM458931-2730 | VIT_17s0000g02950.t01 cdna:novel chromosome:IGGP_12x:17:2721139:2722142:-1 gene:VIT_17s0000g02950 transcript:VIT_17s0000g02950.t | 2 | 588 | 0.01 | 2 | 1 | 3.5 | 5' CTTGGAGTGAAGGGAGCTCTC 3' | |||||||| ||||o| ||| 3' GTAAGTACCTCACTACCCTTG-GAGAGTCGTA 5' |
2032 | Vitis vinifera | TAGCGAAGGATGACTTGCCTA | alignment | plot | GSM458931-2730 | VIT_09s0002g01590.t01 cdna:novel chromosome:IGGP_12x:9:1383432:1390944:1 gene:VIT_09s0002g01590 transcript:VIT_09s0002g01590.t01 | 1 | 1327 | 0.02 | 2 | 2 | 3.5 | 5' TAGCGAAGGATGACTTGCCTA 3' o||| ||||||||||| || | 3' TTGTGTCGGTTCCTACTGAAAGGTTCCCTGTG 5' |
2033 | Vitis vinifera | TTCCACAGCTTTCTTGAACT | alignment | plot | GSM458931-2730 | VIT_15s0048g01740.t01 cdna:novel chromosome:IGGP_12x:15:15941212:15945130:-1 gene:VIT_15s0048g01740 transcript:VIT_15s0048g01740 | 1 | 597 | 0 | 2 | 2 | 2 | 5' TTCCACA-GCTTTCTTGAACT 3' ||||||| |||||||||||| 3' TCGAAGGTGTCCGAAAGAACTTGCGACCGCCG 5' |
2034 | Vitis vinifera | TAGCCAAGGATGACTTGCCTA | alignment | plot | GSM458931-2730 | VIT_15s0046g02460.t01 cdna:novel chromosome:IGGP_12x:15:19232996:19241683:-1 gene:VIT_15s0046g02460 transcript:VIT_15s0046g02460 | 2 | 1190 | 0 | 2 | 1 | 4 | 5' TAGCCAAGGATGACTTGCCTA 3' || ||||||||o |||| |o| 3' CGTTAT-GGTTCCTATAGAACAGGTTAGGTTC 5' |
2035 | Vitis vinifera | TGAATCTTGATGATGCTACAT | alignment | plot | GSM458931-2730 | VIT_13s0019g03550.t01 cdna:novel chromosome:IGGP_12x:13:4720263:4723858:1 gene:VIT_13s0019g03550 transcript:VIT_13s0019g03550.t0 | 1 | 1315 | 0.04 | 2 | 2 | 3.5 | 5' TGAATCTTGATGATGCTACAT 3' |||||o|||||||||| || 3' CTTCCCTTAGGACTACTACGACGTCATCTGTT 5' |
2036 | Vitis vinifera | TGAATCTTGATGATGCTACAC | alignment | plot | GSM458931-2730 | VIT_06s0004g03590.t01 cdna:novel chromosome:IGGP_12x:6:4494335:4498190:-1 gene:VIT_06s0004g03590 transcript:VIT_06s0004g03590.t0 | 1 | 1447 | 0.04 | 2 | 2 | 3.5 | 5' TGAATCTTGATGATGCTACAC 3' |||||o|||||||||| || 3' CTACTCTTAGGACTACTACGACGTCATCTCTT 5' |
2037 | Vitis vinifera | TCTTGCTCAAATGAGTGTTCCA | alignment | plot | GSM458931-2730 | VIT_14s0006g03100.t01 cdna:novel chromosome:IGGP_12x:14:21607164:21608162:1 gene:VIT_14s0006g03100 transcript:VIT_14s0006g03100. | 1 | 139 | 0 | 2 | 2 | 1.5 | 5' TCTTGCTCAAATGAGTGTTCCA 3' |||||||||| |||||o||||| 3' TTAAAGAACGAGTTCACTCATAAGGTACTAGA 5' |
2038 | Vitis vinifera | TGCCTGGCTCCCTGTATGCCA | alignment | plot | GSM458931-2730 | VIT_18s0001g04180.t01 cdna:novel chromosome:IGGP_12x:18:3749619:3757678:1 gene:VIT_18s0001g04180 transcript:VIT_18s0001g04180.t0 | 1 | 686 | 0 | 2 | 2 | 0.5 | 5' TGCCTGGCTCCCTGTATGCCA 3' ||||||||||||||o|||||| 3' TAGAACGGACCGAGGGACGTACGGTCGTCCTT 5' |
2039 | Vitis vinifera | GCCTGGCTCCCCTGTATGCC | alignment | plot | GSM458931-2730 | VIT_18s0001g04180.t01 cdna:novel chromosome:IGGP_12x:18:3749619:3757678:1 gene:VIT_18s0001g04180 transcript:VIT_18s0001g04180.t0 | 1 | 686 | 0 | 2 | 2 | 1.5 | 5' GCCTGGCTCCCCTGTATGCC 3' |||||||| |||||o||||| 3' AGAACGGACCGA-GGGACGTACGGTCGTCCTT 5' |
2040 | Vitis vinifera | TCGGACCAGGCTTCATTCC | alignment | plot | GSM458931-2730 | VIT_10s0003g04670.t01 cdna:novel chromosome:IGGP_12x:10:8333667:8341190:1 gene:VIT_10s0003g04670 transcript:VIT_10s0003g04670.t0 | 1 | 593 | 0 | 2 | 2 | 1 | 5' TCGGACCAGGCTTCATTCC 3' o|||||||||||||||o|| 3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAGAC 5' |
2041 | Vitis vinifera | TCGGACCAGGCTTCATTCCCC | alignment | plot | GSM458931-2730 | VIT_10s0003g04670.t01 cdna:novel chromosome:IGGP_12x:10:8333667:8341190:1 gene:VIT_10s0003g04670 transcript:VIT_10s0003g04670.t0 | 1 | 593 | 0 | 2 | 2 | 2.5 | 5' TCGGACCAGGCTTCATTCCCC 3' o||||||||||||||| ||| 3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5' |