miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


2041 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment

1Arabidopsis thalianaTTGAGTTGTATGTGAATACGalignmentplotGSM278334-4059AT1G67880.1 cdna:known chromosome:TAIR10:1:25453921:25455735:-1 gene:AT1G67880 transcript:AT1G67880.1215820.02213
5'     TTGAGTTGTATGTGAATACG         3'
||o|o||||||o|| |o|||
3' ATTTAATTTAACATATACATGTGCTTTCACTG 5'
2Arabidopsis thalianaTGACAGAAGAAAGAGAGCACalignmentplotGSM278334-4059AT1G27360.3 cdna:known chromosome:TAIR10:1:9501777:9503869:1 gene:AT1G27360 transcript:AT1G27360.3012500821
5'     TGACAGAAGAAAGAGAGCAC         3'
|||||||||| |||||||||
3' TCCAACTGTCTTCTCTCTCTCGTGCCACCTAT 5'
3Arabidopsis thalianaTTCCACAGCTTTCTTGAACTTalignmentplotGSM278334-4059AT5G61440.1 cdna:known chromosome:TAIR10:5:24707500:24708893:1 gene:AT5G61440 transcript:AT5G61440.107190552.5
5'     TTCCACAGCTTTCTTGAACTT        3'
|o| || ||||||||||||||
3' GAATAGGTTG-CGAAAGAACTTGAATAACTAT 5'
4Arabidopsis thalianaTTCGCTTGCAGAGAGAAATCACalignmentplotGSM278334-4059AT2G27400.1 cdna:known chromosome:TAIR10:2:11721539:11722468:-1 gene:AT2G27400 transcript:AT2G27400.103790441.5
5'     TTCGCTTGCAGAGAGAAATCAC       3'
|||||||| |||||o|||||||
3' GAGTAAGCGAACATCTCTTTTTAGTGTTGTTT 5'
5Arabidopsis thalianaTTGACAGAAGATAGAGAGCACalignmentplotGSM278334-4059AT1G27360.3 cdna:known chromosome:TAIR10:1:9501777:9503869:1 gene:AT1G27360 transcript:AT1G27360.321251030.751
5'     TTGACAGAAGATAGAGAGCAC        3'
||||||||||| |||||||||
3' CTCCAACTGTCTTCTCTCTCTCGTGCCACCTA 5'
6Arabidopsis thalianaTTTTCTTCTACTTCTTGCACAalignmentplotGSM278334-4059AT1G30890.2 cdna:known chromosome:TAIR10:1:10994440:10996134:1 gene:AT1G30890 transcript:AT1G30890.219560.0331.54
5'     TTTTCTTCTACTTCTTGCACA        3'
|||||||| || || |||| |
3' TTGAAAAAGAAG-TGCAGTACGTTTACTTATC 5'
7Arabidopsis thalianaTCTATCTTCTTCGTCTTCGATalignmentplotGSM278334-4059AT1G76780.1 cdna:known chromosome:TAIR10:1:28816641:28822256:1 gene:AT1G76780 transcript:AT1G76780.121890.0440.005698013
5'     TCTATCTTCTTCGTCTTCGAT        3'
||| |||||||| ||o||o||
3' AAGAAGA-AGAAGAAGAAGGAGTTAGAATTTA 5'
8Arabidopsis thalianaCATCGTCTTCTTCCTCGATCalignmentplotGSM278334-4059AT1G21460.1 cdna:known chromosome:TAIR10:1:7511850:7513361:-1 gene:AT1G21460 transcript:AT1G21460.129750.02222.5
5'    CATCGTC-TTCTTCCTCGATC         3'
||||||| |||||| ||o|||
3' TCCGTAGCAGTAAGAAGTAGTTAGTGATCACA 5'
9Arabidopsis thalianaAATTGGGTTTATGCTAGAGTTalignmentplotGSM278334-4059AT1G56280.2 cdna:novel chromosome:TAIR10:1:21072855:21074877:-1 gene:AT1G56280 transcript:AT1G56280.2210150.012110.53.5
5'     AATTGGGTTTATGCTAGAGTT        3'
||| |||||||||||| || o
3' GTGGTTATCCCAAATACGATGTCTGTTCTCCT 5'
10Arabidopsis thalianaTTGAACATGGTTTATTAGGAAalignmentplotGSM278334-4059AT3G02470.3 cdna:known chromosome:TAIR10:3:509096:511489:1 gene:AT3G02470 transcript:AT3G02470.3216550.0420.53
5'     TTGAACATGGTTTATTAGGAA        3'
|o||| ||o||| ||||||||
3' TTCGAGCTTTTATCAA-TAATCCTTCTTTTTA 5'
11Arabidopsis thalianaGTCATGGGGTATGATCGAATGalignmentplotGSM278334-4059AT5G52060.1 cdna:known chromosome:TAIR10:5:21152214:21154244:-1 gene:AT5G52060 transcript:AT5G52060.1114530332
5'     GTCATGGGGT-ATGATCGAATG       3'
||||o|||o| |||||||||||
3' ACCGCAGTGCCCTACTACTAGCTTACAAAGGG 5'
12Arabidopsis thalianaAAAACCCGGAATTTTCCCGCalignmentplotGSM278334-4059AT2G27710.4 cdna:known chromosome:TAIR10:2:11816634:11817867:1 gene:AT2G27710 transcript:AT2G27710.425280.0220.54
5'     AAAACCCGGAATTTTCCCGC         3'
|||| ||||| ||||| ||
3' GTTGTTTT-GGCCTGAAAAGTACGATGATGGT 5'
13Arabidopsis thalianaTCCGGAGGGATTCCTTCCTTalignmentplotGSM278334-4059AT4G05320.5 cdna:known chromosome:TAIR10:4:2718170:2720133:1 gene:AT4G05320 transcript:AT4G05320.526480.0150.8333330
5'     TCCGGAGGGATTCCTTCCTT         3'
||||||||||||||||||||
3' GACCAGGCCTCCCTAAGGAAGGAATAGGACCT 5'
14Arabidopsis thalianaAACTCGAACCCGAACCTGAAalignmentplotGSM278334-4059AT5G64260.1 cdna:known chromosome:TAIR10:5:25703929:25705316:1 gene:AT5G64260 transcript:AT5G64260.1210910222.5
5'    AACTCGA-ACCCGAACCTGAA         3'
|||o||| ||||o||||o|||
3' GGTTTGGGCTCTGGGTTTGGGCTTTCTAAAAA 5'
15Arabidopsis thalianaGAACCCAAGACCTCACCCTTalignmentplotGSM278334-4059AT5G22650.1 cdna:known chromosome:TAIR10:5:7534017:7536273:1 gene:AT5G22650 transcript:AT5G22650.1210450.0231.53
5'     GAACCCAAGACCTCACCCTT         3'
o|||||||o||||| || ||
3' AGCTTTTGGGTTTTGGAGAGG-AACTAGGTGC 5'
16Arabidopsis thalianaTTCCACAGCTTTCTTGAACTTalignmentplotGSM278334-4059AT5G27850.1 cdna:known chromosome:TAIR10:5:9873152:9874598:1 gene:AT5G27850 transcript:AT5G27850.125420.02553
5'    TTCCAC-AGCTTTCTTGAACTT        3'
|||| | ||||||||oo|||||
3' CGAAAGGAGATCGAAAGAGTTTGAAGGAAGGG 5'
17Arabidopsis thalianaTGTCTTCATCGTCATCACAAalignmentplotGSM278334-4059AT5G37430.1 cdna:known chromosome:TAIR10:5:14842430:14844308:1 gene:AT5G37430 transcript:AT5G37430.1117560.04120.84
5'     TGTCTTCATCGTCATCACAA         3'
oo|| |||o|o||||||| |
3' AGTAGTAGTAGTGGTAGTAGTGGTAGTAGTAG 5'
18Arabidopsis thalianaTGTCTTCATCGTCATCACAAalignmentplotGSM278334-4059AT5G37430.1 cdna:known chromosome:TAIR10:5:14842430:14844308:1 gene:AT5G37430 transcript:AT5G37430.1117890.04120.84
5'     TGTCTTCATCGTCATCACAA         3'
oo|| |||o|o||||||| |
3' AGTAGTAGTAGTGGTAGTAGTGGTAGTAGTAG 5'
19Arabidopsis thalianaTCCAAAGGGATCGCATTGATCCalignmentplotGSM278334-4059AT3G26810.1 cdna:known chromosome:TAIR10:3:9867845:9870640:1 gene:AT3G26810 transcript:AT3G26810.1020100662
5'     TCCAAAGGGATCGCATTGATCC       3'
|||||||||||||||||| | |
3' CTGTAGGTTTCCCTAGCGTAACAAAGTATGAA 5'
20Arabidopsis thalianaCCTTTGGCACCTTTTTTGGCGalignmentplotGSM278334-4059AT1G72260.1 cdna:known chromosome:TAIR10:1:27198433:27199444:-1 gene:AT1G72260 transcript:AT1G72260.124210.03774
5'     CCTTTGGCACCTT-TTTTGGCG       3'
||o||||||| || ||oo|o||
3' TGTAGGGAACCGTGTAACAAGGCTGCGAGGTA 5'
21Arabidopsis thalianaAGAGAATGAGGTTGAGCCAAalignmentplotGSM278334-4059AT4G13590.2 cdna:novel chromosome:TAIR10:4:7901251:7904025:-1 gene:AT4G13590 transcript:AT4G13590.2012920.02424
5'     AGAGAATGAGGTTG-AGCCAA        3'
|o|||||| ||o|| ||| ||
3' GAGGTTTCTTACACCGACGTCGTTTTTGATTC 5'
22Arabidopsis thalianaGAGGAGGAGGAGCACCACCGTalignmentplotGSM278334-4059AT1G13930.1 cdna:known chromosome:TAIR10:1:4761042:4761725:1 gene:AT1G13930 transcript:AT1G13930.12392041.333333
5'     GAGGAGGAGGAGCACCACCGT        3'
||||||||||| ||||| |oo
3' CAGCCTCCTCCTCCTGGTGGTCGTGGCCACCT 5'
23Arabidopsis thalianaTCCGAATCAGAATCGGAGTCalignmentplotGSM278334-4059AT3G24040.1 cdna:known chromosome:TAIR10:3:8680877:8683289:-1 gene:AT3G24040 transcript:AT3G24040.1112500.02223.5
5'     TCCGAATCAGAATCGGAGTC         3'
|| |||o|||||o||| |o|
3' GGATAGCCTTGGTCTTGGCC-CGGCTTCCTAT 5'
24Arabidopsis thalianaTCATCTTCATCATCATCATCTalignmentplotGSM278334-4059AT1G03530.1 cdna:known chromosome:TAIR10:1:880496:883391:-1 gene:AT1G03530 transcript:AT1G03530.1210240.05100.476191.5
5'     TCATCTTCATCATCATCATCT        3'
||||| ||||||||||||||o
3' TAGTAGTAGTAGTAGTAGTAGTAGGAGTAGGA 5'
25Arabidopsis thalianaTCTTCTTCGTCGCCATTACTalignmentplotGSM278334-4059AT4G38590.1 cdna:known chromosome:TAIR10:4:18036092:18040928:1 gene:AT4G38590 transcript:AT4G38590.1026040.0130.1458334
5'     TCTTCTTCGTCGCCATTACT         3'
|||||||| ||o |||o| |
3' AAGAAGAAGAAGAAGTAGTAGT-AGAAGTAGC 5'
26Arabidopsis thalianaTCATCTTCATCATCATCATCTalignmentplotGSM278334-4059AT4G38590.1 cdna:known chromosome:TAIR10:4:18036092:18040928:1 gene:AT4G38590 transcript:AT4G38590.1026040.0330.1458332
5'     TCATCTTCATCATCATCATCT        3'
|| ||||| ||||||||||||
3' AAGAAGAAGAAGAAGTAGTAGTAGAAGTAGCA 5'
27Arabidopsis thalianaCGGATCCGGATACGGATCCGGalignmentplotGSM278334-4059AT5G43850.1 cdna:known chromosome:TAIR10:5:17627182:17629159:-1 gene:AT5G43850 transcript:AT5G43850.123900.01223.5
5'     CGGATCCGGATACGGATCCGG        3'
| ||||o|||||||||||oo
3' TCCAACGTAGGTCTATGCCTAGGTTGCTAGTA 5'
28Arabidopsis thalianaCTCGACCTGAGGGTCGAGTGGTalignmentplotGSM278334-4059AT4G34050.1 cdna:known chromosome:TAIR10:4:16310775:16312216:1 gene:AT4G34050 transcript:AT4G34050.127860.01214
5'     CTCGACCTGAGGGTCGAGTGGT       3'
||||| |o||||||| ||oo|o
3' TCTAGAGCTAGGCTCCCAG-TCGTCGTTCTCG 5'
29Arabidopsis thalianaTGTCTTCATCGTCATCACAAalignmentplotGSM278334-4059AT1G21722.1 cdna:known chromosome:TAIR10:1:7628456:7629252:1 gene:AT1G21722 transcript:AT1G21722.114150.0120.3928573
5'     TGTCTTCATCGTCATCACAA         3'
oo|| ||||||||||||| |
3' AGTTGTAGTAGTAGCAGTAGTGATAATAGTAG 5'
30Arabidopsis thalianaTCATCATCATCATCATCTTCTalignmentplotGSM278334-4059AT1G26890.1 cdna:novel chromosome:TAIR10:1:9317589:9319246:1 gene:AT1G26890 transcript:AT1G26890.127850.0140.01136360.5
5'     TCATCATCATCATCATCTTCT        3'
|||||||||||||||||o|||
3' TAGTAGTAGTAGTAGTAGTAGGAGATGGAGTA 5'
31Arabidopsis thalianaTCATTGAGTGCAGCGTTGATGalignmentplotGSM278334-4059AT4G23130.2 cdna:known chromosome:TAIR10:4:12117598:12120134:-1 gene:AT4G23130 transcript:AT4G23130.2019640214
5'     TCATTGAGTGCAGCGTTGATG        3'
| ||o|| ||||||o|oo|||
3' TATCATTAGCT-ACGTCGTAGTTACCTTGTTT 5'
32Arabidopsis thalianaTTCGCTTGCAGAGAGAAATCACalignmentplotGSM278334-4059AT2G39681.1 cdna:known chromosome:TAIR10:2:16539384:16540417:-1 gene:AT2G39681 transcript:AT2G39681.10418013131.5
5'     TTCGCTTGCAGAGAGAAATCAC       3'
|||||||| |||||o|||||||
3' TAGTAAGCGAACCTCTCTTTTTAGTGTTTTGG 5'
33Arabidopsis thalianaGTATAGCATAATGAGCAATCAalignmentplotGSM278334-4059AT3G12120.1 cdna:known chromosome:TAIR10:3:3860285:3863050:-1 gene:AT3G12120 transcript:AT3G12120.1214510.04633
5'     GTATAGCATAATGAGCAATCA        3'
oo|||o||||||||||| o||
3' AGGGTGTATTGTATTACTCGTCGGTTTTACAG 5'
34Arabidopsis thalianaAACAGAGGAAAAACAGAAACAalignmentplotGSM278334-4059AT1G80120.1 cdna:known chromosome:TAIR10:1:30139101:30140204:1 gene:AT1G80120 transcript:AT1G80120.107620.05223
5'     AACAGAGGAAAAACAGAAACA        3'
|| |||o||||| ||o|||||
3' GGTTTTTTCTTCTTTT-GTTTTTGTTTTTTTC 5'
35Arabidopsis thalianaTTGAGAGCAACAAGACATAATalignmentplotGSM278334-4059AT4G13495.2 cdna:known chromosome:TAIR10:4:7842967:7846774:1 gene:AT4G13495 transcript:AT4G13495.227560212
5'     TTGAGAGCAACAAGACATAAT        3'
|||||| |||||||||||||
3' CGATAACTCTAGTTGTTCTGTATTCTTTCTCA 5'
36Arabidopsis thalianaTTAGATTCACGCACAAACTCGalignmentplotGSM278334-4059AT1G31280.1 cdna:known chromosome:TAIR10:1:11181711:11185344:1 gene:AT1G31280 transcript:AT1G31280.103233049491
5'     TTAGATTCACGCACAAACTCG        3'
||||||||||||||||||||
3' GGTTAATCTAAGTGCGTGTTTGAGGAAAGATG 5'
37Arabidopsis thalianaTCCAAAGGGATCGCATTGATCCalignmentplotGSM278334-4059AT1G12820.1 cdna:known chromosome:TAIR10:1:4368760:4371293:-1 gene:AT1G12820 transcript:AT1G12820.1018950882
5'     TCCAAAGGGATCGCATTGATCC       3'
|||||||||||||||||| | |
3' CTGTAGGTTTCCCTAGCGTAACAAAGCATGGA 5'
38Arabidopsis thalianaGCTGGAGGAACTGCAGCTATGalignmentplotGSM278334-4059AT5G48485.1 cdna:known chromosome:TAIR10:5:19646232:19646802:-1 gene:AT5G48485 transcript:AT5G48485.124110.01554
5'     GCTGGAGGAACTGCAGCTATG        3'
o|o|o|o||||o| |||o|||
3' GTTGTGGCTTTCTTGGC-TCGGTACCTCTCAA 5'
39Arabidopsis thalianaAAACGACGTCGTTGGTGATTalignmentplotGSM278334-4059AT5G40350.1 cdna:known chromosome:TAIR10:5:16138544:16141134:-1 gene:AT5G40350 transcript:AT5G40350.126710.03223
5'     AAACGACGTCGTTGGTGATT         3'
| ||||||||||||| || |
3' CAACTATGCTGCAGCAACCTCTTATGTATAGG 5'
40Arabidopsis thalianaACCATCAATTCATCGTGGCCGalignmentplotGSM278334-4059AT3G18760.2 cdna:known chromosome:TAIR10:3:6457690:6459627:-1 gene:AT3G18760 transcript:AT3G18760.225600.04214
5'     ACCATCAATTCATCGTGGCCG        3'
||||o|| ||||| ||oo||o
3' CGTATGGTGGTGAAGTA-CATTGGTTTTTGTA 5'
41Arabidopsis thalianaCTATCATCATCATCCTCGTAAalignmentplotGSM278334-4059AT2G11910.2 cdna:known chromosome:TAIR10:2:4805684:4807319:-1 gene:AT2G11910 transcript:AT2G11910.225090.0431.53.5
5'     CTATCATCATCATCCTCGTAA        3'
| ||||||||| |||||o| |
3' TGTAG-TAGTAGTAGAAGGAGTAGTAGCAGAA 5'
42Arabidopsis thalianaCATCGTCTTCTTCCTCGATCalignmentplotGSM278334-4059AT2G11910.2 cdna:known chromosome:TAIR10:2:4805684:4807319:-1 gene:AT2G11910 transcript:AT2G11910.225080.02212.5
5'     CATCGTCTTCTTCCTCGATC         3'
||||o|| |||||||| |||
3' TGTAGTAGTAGTAGAAGGAG-TAGTAGCAGAA 5'
43Arabidopsis thalianaTTCGAGGCCTATTAAACCTCTGalignmentplotGSM278334-4059AT5G54770.1 cdna:known chromosome:TAIR10:5:22246592:22248332:1 gene:AT5G54770 transcript:AT5G54770.1211790.0326264
5'     TTCGAGGCCTATTAAACCTCTG       3'
|||o||o| |||||||| o||o
3' TTTCAAGTTCTGTATAATTTGTGGATTTGAGG 5'
44Arabidopsis thalianaTGACAGAAAGAGAGGTGAGCAalignmentplotGSM278334-4059AT1G32230.3 cdna:known chromosome:TAIR10:1:11612118:11616218:1 gene:AT1G32230 transcript:AT1G32230.3024980.04134.333334
5'     TGACAGAAAGAGAGGTGAGCA        3'
o||||||||||o|o|| o||
3' AAGTGCTGTCTTTCTTTTCAGCTGTGTAAAAT 5'
45Arabidopsis thalianaTCGACCTCGTGGTCGAGTGGalignmentplotGSM278334-4059AT5G61580.2 cdna:known chromosome:TAIR10:5:24761091:24764014:1 gene:AT5G61580 transcript:AT5G61580.2118160224
5'     TCGACCTCGTGGTCGAG-TGG        3'
||o|||||o| || ||| |||
3' GTAGAGTTGGAGTAGCAACTCTACCTACAACT 5'
46Arabidopsis thalianaAAACGAACAAAAAACTGATGGalignmentplotGSM278334-4059AT1G13860.1 cdna:known chromosome:TAIR10:1:4743309:4746956:-1 gene:AT1G13860 transcript:AT1G13860.1027600.0461.54
5'     AAACGAACAAAAAACTGATGG        3'
|||||||||||||| |o| o
3' ATGCTTTGCTTGTTTTTT-ATTTTGACTCTTG 5'
47Arabidopsis thalianaTGACCTGCCAAAGGAGAGTTGalignmentplotGSM278334-4059AT1G02330.1 cdna:known chromosome:TAIR10:1:462075:463612:-1 gene:AT1G02330 transcript:AT1G02330.129840.03224
5'     TGACCTGCCAAAGGAGAGTTG        3'
|o|| | |||||o||| ||||
3' TTAGATTGTA-GGTTTTCTCACAACAATGGGC 5'
48Arabidopsis thalianaTTGTACAAATTTAAGTGTACGalignmentplotGSM278334-4059AT1G16890.1 cdna:known chromosome:TAIR10:1:5776346:5778263:-1 gene:AT1G16890 transcript:AT1G16890.127250.0420.6666673.5
5'     TTGTACAAATTTA-AGTGTACG       3'
||o||||||||o| || ||||o
3' GATCAATATGTTTAAGTCTCTCATGTTTAGAA 5'
49Arabidopsis thalianaAGAATCCTGATGATGCTGCalignmentplotGSM278334-4059AT1G53400.1 cdna:known chromosome:TAIR10:1:19924752:19926631:1 gene:AT1G53400 transcript:AT1G53400.116770.04223.5
5'     AGAATCCTGATGATGCTGC          3'
||||||||o||| o||o|
3' CGTCTCTTAGGATTACATTGATGAATGTGTGT 5'
50Arabidopsis thalianaTGAGAAGAAGAAGAAGAAAAalignmentplotGSM278334-4059AT5G55910.1 cdna:known chromosome:TAIR10:5:22639844:22642354:-1 gene:AT5G55910 transcript:AT5G55910.1019430.02332.5
5'     TGAGAAGAAGAAGAAGAAAA         3'
|o|o||||||||o|| ||||
3' TTTAATTTTTCTTCTTTTT-TTTTCTTTGTGT 5'
51Arabidopsis thalianaTGAGAAGAAGAAGAAGAAAAalignmentplotGSM278334-4059AT2G40520.1 cdna:known chromosome:TAIR10:2:16923068:16925914:1 gene:AT2G40520 transcript:AT2G40520.1217870.0460.00934391.5
5'     TGAGAAGAAGAAGAAGAAAA         3'
o||||||||||||||||||
3' TCTTCTTCTTCTTCTTCTTCTTTTTCTTTTTG 5'
52Arabidopsis thalianaTTTGCGATGAGTTTGCGAGGATalignmentplotGSM278334-4059AT2G40660.1 cdna:known chromosome:TAIR10:2:16965933:16969035:1 gene:AT2G40660 transcript:AT2G40660.1113070334
5'    TTTGCGA-TGAGTTTGCGAGGAT       3'
||| |o| |||||||||||o ||
3' GAAAAAGGTTGACTCAAACGCTTATAGTTTCT 5'
53Arabidopsis thalianaTTGACAGAAGATAGAGAGCACalignmentplotGSM278334-4059AT5G43270.2 cdna:known chromosome:TAIR10:5:17360305:17363773:-1 gene:AT5G43270 transcript:AT5G43270.221160020.6666671
5'     TTGACAGAAGATAGAGAGCAC        3'
||||||||||| |||||||||
3' CTTAAACTGTCTTCTCTCTCTCGTGGTAGTTC 5'
54Arabidopsis thalianaGTTCCGGCGAGTCTGTTCCCalignmentplotGSM278334-4059AT3G26520.1 cdna:known chromosome:TAIR10:3:9722443:9723815:-1 gene:AT3G26520 transcript:AT3G26520.128010553.5
5'     GTTCCGGCGAGTCTGTTCCC         3'
o||||||||||||oooo ||
3' CTATTAAGGCCGCTCAGGTGGTGGTTATTCTC 5'
55Arabidopsis thalianaTATGAGAGTATTATAAGTCACalignmentplotGSM278334-4059AT2G33120.2 cdna:known chromosome:TAIR10:2:14043459:14045543:-1 gene:AT2G33120 transcript:AT2G33120.2210180.0220.6666673
5'     TATGAGAGTATTATAAGTCAC        3'
|||||||o||| | ||o||||
3' TATCATACTCTTATA-TCTTTAGTGTTTTTGT 5'
56Arabidopsis thalianaACCGGTATCTGGTCCGGTTTCalignmentplotGSM278334-4059AT3G02560.2 cdna:known chromosome:TAIR10:3:541800:543385:1 gene:AT3G02560 transcript:AT3G02560.225420.01424
5'     ACCGGTATCTGGTCCGGTTTC        3'
| ||||||||||| | ||||
3' GTTCT-GCCATAGACCAAGAGAAAGGATGTTA 5'
57Arabidopsis thalianaTCCTCCACCACCGAGAGCATTalignmentplotGSM278334-4059AT2G32690.1 cdna:known chromosome:TAIR10:2:13863717:13864596:-1 gene:AT2G32690 transcript:AT2G32690.126150.0371.753.5
5'     TCCTCCACCACCGAGAGCATT        3'
|||||||||||| |o || ||
3' CTGGAGGAGGTGGTGG-TTACGGAAATGGTTT 5'
58Arabidopsis thalianaTGATTGAGCCGTGTCAATATCalignmentplotGSM278334-4059AT2G45160.1 cdna:known chromosome:TAIR10:2:18617862:18620150:-1 gene:AT2G45160 transcript:AT2G45160.1110140331
5'     TGATTGAGCCGTGTCAATATC        3'
|||||||||||o|o|||||||
3' TACCACTAACTCGGCGCGGTTATAGGGAACGC 5'
59Arabidopsis thalianaAACCGGATTCTGGTTTGGTTAalignmentplotGSM278334-4059AT5G01530.1 cdna:known chromosome:TAIR10:5:208937:210445:1 gene:AT5G01530 transcript:AT5G01530.124440223.5
5'     AACCGGATTCTGGTTTGGTTA        3'
| ||o|||||||||o|o|| |
3' AGAATCGGTCTAAGACCAGATCACTTAGCTAT 5'
60Arabidopsis thalianaTCCTGAGTTTCATTGGCTCTalignmentplotGSM278334-4059AT3G59540.1 cdna:known chromosome:TAIR10:3:21995677:21996836:-1 gene:AT3G59540 transcript:AT3G59540.123150.0515153.5
5'     TCCTGAGTTTCATTGGCTCT         3'
|||||| |||||| o| |||
3' ATCTAGGACT-AAAGTATTCTAGAAGTTTCCA 5'
61Arabidopsis thalianaAACGGCGTGAGTGCCGTAGAalignmentplotGSM278334-4059AT1G76080.1 cdna:known chromosome:TAIR10:1:28547786:28549419:-1 gene:AT1G76080 transcript:AT1G76080.129570.01333.5
5'     AACGGCGTGAGTGCCGTAGA         3'
||| || |||||o||| |||
3' GTGCTTG-CGGACTCATGGCTTCTTAGAGAGG 5'
62Arabidopsis thalianaTCATCATCATCATCATCTTCTalignmentplotGSM278334-4059AT1G13220.2 cdna:known chromosome:TAIR10:1:4515699:4520284:1 gene:AT1G13220 transcript:AT1G13220.2133020.05222
5'     TCATCATCATCATCATCTTCT        3'
||||||||||| ||||| |||
3' GGGTAGTAGTAGTAGCAGTAGTAGAACTAAAA 5'
63Arabidopsis thalianaTCTTCTTCGTCGCCATTACTalignmentplotGSM278334-4059AT4G27310.1 cdna:known chromosome:TAIR10:4:13675638:13676910:1 gene:AT4G27310 transcript:AT4G27310.115860.02224
5'     TCTTCTTCGTCGCCATTACT         3'
|||||||| ||o |||o| |
3' GAGTAGAAGAAGGAGTAGTAGT-AGCATTCTG 5'
64Arabidopsis thalianaTGAGAAGAAGAAGAAGAAAAalignmentplotGSM278334-4059AT1G31335.1 cdna:known chromosome:TAIR10:1:11216914:11217393:-1 gene:AT1G31335 transcript:AT1G31335.101100.04222.5
5'     TGAGAAGAAGA-AGAAGAAAA        3'
o|||||| ||| |||||||||
3' TTAGGCTCTTCATCTGTCTTCTTTTAATCTCC 5'
65Arabidopsis thalianaTCTATCTTCTTCGTCTTCGATalignmentplotGSM278334-4059AT1G77122.1 cdna:known chromosome:TAIR10:1:28977357:28978743:-1 gene:AT1G77122 transcript:AT1G77122.123210.0140.005698012.5
5'     TCTATCTTCTTCGTCTTCGAT        3'
||| |||||||| |||||o||
3' AAGAAGA-AGAAGAAGAAGAAGTTACTAGTTG 5'
66Arabidopsis thalianaCCAGCTTTCCATTGCACTAAalignmentplotGSM278334-4059AT4G25740.2 cdna:known chromosome:TAIR10:4:13107264:13108827:-1 gene:AT4G25740 transcript:AT4G25740.225960.05213.5
5'     CCAGCTTTCCATTGCACTAA         3'
|||| ||| ||||o||| ||
3' CTAAGGTCTAAACGTAATGTGTTTGTCTTGAT 5'
67Arabidopsis thalianaTCATCATCATCATCATCTTCTalignmentplotGSM278334-4059AT5G08600.1 cdna:known chromosome:TAIR10:5:2786267:2789871:1 gene:AT5G08600 transcript:AT5G08600.123300.0140.01136360
5'     TCATCATCATCATCATCTTCT        3'
|||||||||||||||||||||
3' TAGTAGTAGTAGTAGTAGTAGAAGACTGAGGT 5'
68Arabidopsis thalianaTGTACATCACTTTTAGTGTAalignmentplotGSM278334-4059AT2G32990.1 cdna:known chromosome:TAIR10:2:14003250:14006017:1 gene:AT2G32990 transcript:AT2G32990.1118160.05224
5'     TGTACATCACTTTTAGTGTA         3'
|o|||| ||||||| o| ||
3' TAAAATATGT-GTGAAAAATAAATTTTTGTTT 5'
69Arabidopsis thalianaAGAAGAAGAGGCGTCCTCCTalignmentplotGSM278334-4059AT4G24100.1 cdna:known chromosome:TAIR10:4:12515076:12519841:1 gene:AT4G24100 transcript:AT4G24100.1026770223.5
5'     AGAAGAAGAGGCGTCCTCCT         3'
|o|||||||| | | |||||
3' TGGGTTTTCTTCTC-GAAAGAGGAAATAGAGT 5'
70Arabidopsis thalianaAGCCATCATCATGTTCCTGTalignmentplotGSM278334-4059AT2G38690.1 cdna:known chromosome:TAIR10:2:16176631:16177754:-1 gene:AT2G38690 transcript:AT2G38690.114450.02334
5'     AGCCATCATCAT-GTTCCTGT        3'
|o||||| |||| ||o ||||
3' ACAATTGGTAGAAGTAGCAGAGACATAGTCAT 5'
71Arabidopsis thalianaCACCATCTTCGTTGCTCTCTalignmentplotGSM278334-4059AT2G38690.1 cdna:known chromosome:TAIR10:2:16176631:16177754:-1 gene:AT2G38690 transcript:AT2G38690.114450333
5'     CACCATCTTCGTTGCTCTCT         3'
|||||||||o|o| |||||
3' ACAATTGGTAGAAGTAGC-AGAGACATAGTCA 5'
72Arabidopsis thalianaCTATCATCATCATCCTCGTAAalignmentplotGSM278334-4059AT2G30350.2 cdna:known chromosome:TAIR10:2:12934150:12935773:-1 gene:AT2G30350 transcript:AT2G30350.226270.0240.01136363
5'     CTATCATCATCATCCTCGTAA        3'
| ||||||||||||||| | |
3' AGTAG-TAGTAGTAGTAGGAGAAGTAATTGGA 5'
73Arabidopsis thalianaTAGTCCGGTTTTGGATACGTGalignmentplotGSM278334-4059AT1G42970.1 cdna:known chromosome:TAIR10:1:16127381:16129843:1 gene:AT1G42970 transcript:AT1G42970.1215850.0410104
5'     TAGTCCGGTTTTGGATACGTG        3'
|||| ||o|||o|o||| ||o
3' ACGTATCATGCTAAAGCTTATTCATTGAGTAC 5'
74Arabidopsis thalianaATTTGCGAGGGAATTGCAAGAalignmentplotGSM278334-4059AT3G63340.2 cdna:known chromosome:TAIR10:3:23391628:23398377:-1 gene:AT3G63340 transcript:AT3G63340.2237490.04424
5'     ATTTGCGAGGGAATTGCAAGA        3'
||||o|o|||o|| o|||||
3' GAAATAAATGTTCCTTTTCTGTTCTCCGATAA 5'
75Arabidopsis thalianaACCCAATCTCTACTTCAGTCTalignmentplotGSM278334-4059AT2G11890.1 cdna:known chromosome:TAIR10:2:4802793:4804358:1 gene:AT2G11890 transcript:AT2G11890.124860.05213.5
5'     ACCCAATCTCTACTTCAGTCT        3'
|| |||||||o ||||| |||
3' GTTATGAGTTAGAGGAGAAGT-AGAAGGAGGT 5'
76Arabidopsis thalianaCTATCATCATCATCCTCGTAAalignmentplotGSM278334-4059AT1G49900.1 cdna:known chromosome:TAIR10:1:18473908:18477643:-1 gene:AT1G49900 transcript:AT1G49900.121931040.01136362.5
5'     CTATCATCATCATCCTCGTAA        3'
| |||||||||||| ||o|||
3' AGTAG-TAGTAGTAGTAGTAGTATTATTCTTG 5'
77Arabidopsis thalianaAAGCTCAGGAGGGATAGCGCCalignmentplotGSM278334-4059AT5G57735.1 cdna:known chromosome:TAIR10:5:23394005:23394500:1 gene:AT5G57735 transcript:AT5G57735.104290333
5'     AAGCTCAGGAGGGATAGCGCC        3'
||||||||||||o|||| o |
3' GTATTTCGAGTCCTCCTTATCTTTGTTGTTTG 5'
78Arabidopsis thalianaCTATCATCATCATCCTCGTAAalignmentplotGSM278334-4059AT1G49900.1 cdna:known chromosome:TAIR10:1:18473908:18477643:-1 gene:AT1G49900 transcript:AT1G49900.1219640.0340.01136362.5
5'     CTATCATCATCATCCTCGTAA        3'
| |||||||||||||||o| |
3' AGTAG-TAGTAGTAGTAGGAGTAGTGGTAGTA 5'
79Arabidopsis thalianaTTTGGATTGAAGGGAGCTCTTalignmentplotGSM278334-4059AT2G21600.1 cdna:known chromosome:TAIR10:2:9242801:9244833:1 gene:AT2G21600 transcript:AT2G21600.119140.03554
5'     TTTGGATTGAAGGGAGCTCTT        3'
o|||||||o||||||o|| o
3' CCATGAACCTAATTTCCCTTGATTGTTTCTTG 5'
80Arabidopsis thalianaCATCCAAGGTGTTTGTAGAAAalignmentplotGSM278334-4059AT1G09750.1 cdna:known chromosome:TAIR10:1:3157501:3159148:1 gene:AT1G09750 transcript:AT1G09750.1014940.02884
5'     CATCCAAGGTGTTTGTAGAAA        3'
||| |||o||o| |||||||
3' GCAAGTATGTTTCATATACATCTTCCAGTTCG 5'
81Arabidopsis thalianaTGCAGCTGCAGCATCATCAAalignmentplotGSM278334-4059AT2G26500.2 cdna:known chromosome:TAIR10:2:11270218:11270874:1 gene:AT2G26500 transcript:AT2G26500.213700.041893.5
5'     TGCAGCTGCAGCATCATCAA         3'
| ||o|||||o||o|| |||
3' GCTTAGGTTGACGTTGTGGTTGTTCTCATTCT 5'
82Arabidopsis thalianaAAGACGGCTGGGAAATGGCAalignmentplotGSM278334-4059AT4G25740.1 cdna:known chromosome:TAIR10:4:13107250:13108827:-1 gene:AT4G25740 transcript:AT4G25740.125150.02213.5
5'     AAGACGGCTGGGAAATGGCA         3'
|||||||||||o|| oo||
3' ACCTTTCTGCCGACCTTTAGTCGACCTCGAGG 5'
83Arabidopsis thalianaTCATCATCATCATCATCTTCTalignmentplotGSM278334-4059AT3G29000.1 cdna:known chromosome:TAIR10:3:11005779:11006414:1 gene:AT3G29000 transcript:AT3G29000.122150.0340.01136361
5'     TCATCATCATCATCATCTTCT        3'
||||||||||||||||| |||
3' TAGTAGTAGTAGTAGTAGTAGTAGAAGAACAA 5'
84Arabidopsis thalianaTGATTGAGCCGTGTCAATATCalignmentplotGSM278334-4059AT4G00150.1 cdna:known chromosome:TAIR10:4:57199:59286:-1 gene:AT4G00150 transcript:AT4G00150.108670331
5'     TGATTGAGCCGTGTCAATATC        3'
|||||||||||o|o|||||||
3' GACAACTAACTCGGCGCGGTTATAGGGGACTC 5'
85Arabidopsis thalianaTCATCATCATCATCATCTTCTalignmentplotGSM278334-4059AT3G29000.1 cdna:known chromosome:TAIR10:3:11005779:11006414:1 gene:AT3G29000 transcript:AT3G29000.12212040.01136360
5'     TCATCATCATCATCATCTTCT        3'
|||||||||||||||||||||
3' TAGTAGTAGTAGTAGTAGTAGAAGAACAAACC 5'
86Arabidopsis thalianaTCCTCCACCACCGAGAGCATalignmentplotGSM278334-4059AT2G32690.3 cdna:known chromosome:TAIR10:2:13863717:13864596:-1 gene:AT2G32690 transcript:AT2G32690.325910.0471.753.5
5'     TCCTCCACCACCGAGAGCAT         3'
|||||||||||| |o || |
3' CTGGAGGAGGTGGTGG-TTACGGAAATGGTTT 5'
87Arabidopsis thalianaGTATAGCATAATGAGCAATCAalignmentplotGSM278334-4059AT3G12120.2 cdna:known chromosome:TAIR10:3:3860445:3862880:-1 gene:AT3G12120 transcript:AT3G12120.2214120.04633
5'     GTATAGCATAATGAGCAATCA        3'
oo|||o||||||||||| o||
3' AGGGTGTATTGTATTACTCGTCGGTTTTACAG 5'
88Arabidopsis thalianaGATCATGCTATCTCTTTGGAalignmentplotGSM278334-4059AT2G17340.1 cdna:known chromosome:TAIR10:2:7541406:7544128:-1 gene:AT2G17340 transcript:AT2G17340.115760.01224
5'     GATCATGCTATCTCTTTGGA         3'
|| |||o|o|||o||| o||
3' CTTTCT-GTATGGTAGGGAACTCTTTTGAAGT 5'
89Arabidopsis thalianaTGGTGTCGATCGACACCAAGGalignmentplotGSM278334-4059AT3G11830.1 cdna:known chromosome:TAIR10:3:3732661:3736374:1 gene:AT3G11830 transcript:AT3G11830.1216410.03214
5'     TGGTGTCGATCGACACCAAGG        3'
o||| ||| ||||||| |||o
3' AAGTGCCAAAGC-AGCTGTGATTCTTACTCCG 5'
90Arabidopsis thalianaTGACAGAAGAGAGTTAGCACalignmentplotGSM278334-4059AT2G33810.1 cdna:known chromosome:TAIR10:2:14305001:14306072:1 gene:AT2G33810 transcript:AT2G33810.107970662
5'     TGACAGAAGAGAGTTAGCAC         3'
|||||||||||||| ||||
3' TCTGACTGTCTTCTCTCATTCGTTTCGGACAA 5'
91Arabidopsis thalianaTCCTTGAAAGGTTCATTATCalignmentplotGSM278334-4059AT5G37352.1 cdna:pseudogene chromosome:TAIR10:5:14796126:14797001:1 gene:AT5G37352 transcript:AT5G37352.115850.0331.54
5'     TCCTTGAAAGGTTCATTATC         3'
||| || ||| |o|||o|||
3' GGTAAGGTACATTCGAGGTAGTAGGTGGTGTA 5'
92Arabidopsis thalianaTCATGGTCAGATCCGTCATCCalignmentplotGSM278334-4059AT5G37352.1 cdna:pseudogene chromosome:TAIR10:5:14796126:14797001:1 gene:AT5G37352 transcript:AT5G37352.115850.0131.54
5'     TCATGGTCAGATCCGTCATCC        3'
o||| || || |||o||||||
3' GTAAGGTA-CATTCGAGGTAGTAGGTGGTGTA 5'
93Arabidopsis thalianaAGTGGCTGCAGCTGCAGCGACalignmentplotGSM278334-4059AT5G20020.1 cdna:known chromosome:TAIR10:5:6762724:6764671:1 gene:AT5G20020 transcript:AT5G20020.127200.02223.5
5'     AGTGGCTGCAGCTGCAGCGAC        3'
|| ||||| |||||||||o |
3' CCCCTCTCCGAC-TCGACGTCGTCGACGTTCT 5'
94Arabidopsis thalianaAGAATCTTGATGATGCTGCAGalignmentplotGSM278334-4059AT3G62070.1 cdna:known chromosome:TAIR10:3:22983138:22984513:-1 gene:AT3G62070 transcript:AT3G62070.107060.01224
5'     AGAATCTTGATGATGCTGCAG        3'
|||| |||||o| || o||||
3' TGATTCTTCGAACTGC-ACAGCGTCTTCGATT 5'
95Arabidopsis thalianaACTGTATATATGTAAGTGACAalignmentplotGSM278334-4059AT2G17230.1 cdna:known chromosome:TAIR10:2:7494536:7496016:-1 gene:AT2G17230 transcript:AT2G17230.1112390.04334
5'     ACTGTATATATGTAAGTGA-CA       3'
||| |||||||o|||| o| ||
3' AATTTGAAATATATATATTCTTTAGTATTTCA 5'
96Arabidopsis thalianaTTCTTGCATATGTTCTTTATCalignmentplotGSM278334-4059AT1G18450.1 cdna:known chromosome:TAIR10:1:6348107:6351975:1 gene:AT1G18450 transcript:AT1G18450.1115880333.5
5'     TTCTTGCATATGTTCTTTATC        3'
||||| ||o||||| |||||
3' TTTGAAGAAGGTGTACAA-AAATACAAAAATT 5'
97Arabidopsis thalianaTGAGAAGAAGAAGAAGAAAAalignmentplotGSM278334-4059AT3G15140.1 cdna:known chromosome:TAIR10:3:5099532:5101781:-1 gene:AT3G15140 transcript:AT3G15140.122340.0360.00934391.5
5'     TGAGAAGAAGAAGAAGAAAA         3'
o||||||||||||||||||
3' TCTTCTTCTTCTTCTTCTTCTTTTCAGTCTCC 5'
98Arabidopsis thalianaTGCCTGGCTCCCTGTATGCCalignmentplotGSM278334-4059AT1G77850.1 cdna:known chromosome:TAIR10:1:29272313:29275419:1 gene:AT1G77850 transcript:AT1G77850.101420016160.5
5'     TGCCTGGCTCCCTGTATGCC         3'
||||||||||||||o|||||
3' TATAACGGACCGAGGGACGTACGGTCGTCCTT 5'
99Arabidopsis thalianaTACCAACCTTTCATCGTTCCCalignmentplotGSM278334-4059AT3G60245.1 cdna:known chromosome:TAIR10:3:22268746:22270006:1 gene:AT3G60245 transcript:AT3G60245.12770.05224
5'     TACCAACCTTTCATCGTTCCC        3'
| |||||| ||| |||||| |
3' TGCTAAGGTTGG-AAGAAGCAAGAGAAGCGGT 5'
100Arabidopsis thalianaGGAATCTTGATGATGCTGCATalignmentplotGSM278334-4059AT3G54990.1 cdna:known chromosome:TAIR10:3:20373718:20376522:-1 gene:AT3G54990 transcript:AT3G54990.109760441.5
5'     GGAATCTTGATGATGCTGCAT        3'
||||||o|||||||||||||
3' TTTCCCTTAGGACTACTACGACGTTGACAGAA 5'
101Arabidopsis thalianaACTCGGCCAGGTAGTCGAGTGalignmentplotGSM278334-4059AT1G04270.1 cdna:known chromosome:TAIR10:1:1141604:1143053:-1 gene:AT1G04270 transcript:AT1G04270.124600213.5
5'     ACTCGGCCAGGTAGTCGAGTG        3'
||||o|||||||||| || oo
3' CTCTTGAGTCGGTCCATCA-CTGGTTAGTAGA 5'
102Arabidopsis thalianaTGAGAAGAAGAAGAAGAAAAalignmentplotGSM278334-4059AT3G48160.2 cdna:known chromosome:TAIR10:3:17783331:17786099:1 gene:AT3G48160 transcript:AT3G48160.2215400.0360.00934391.5
5'     TGAGAAGAAGAAGAAGAAAA         3'
o||||||||||||||||||
3' TCTTCTTCTTCTTCTTCTTCTTTTTCTTCTAG 5'
103Arabidopsis thalianaTTAGCTGAAGAAGCAGAGGAGalignmentplotGSM278334-4059AT3G22220.1 cdna:known chromosome:TAIR10:3:7839616:7842874:-1 gene:AT3G22220 transcript:AT3G22220.1027150.03224
5'     TTAGCTGAAGAAGCAGAGGAG        3'
| || |o|||||| |||o|||
3' AATGACTC-ATTTCTTCTTCTTCTCCTTCTTC 5'
104Arabidopsis thalianaTGAGAAGAAGAAGAAGAAAAalignmentplotGSM278334-4059AT5G64816.2 cdna:known chromosome:TAIR10:5:25913000:25914027:1 gene:AT5G64816 transcript:AT5G64816.214920421.5
5'     TGAGAAGAAGAAGAAGAAAA         3'
o||||||||||||||||| |
3' TATCGCTCTTCTTCTTCTTCTTCTTCTCTCGA 5'
105Arabidopsis thalianaCTATCATCATCATCCTCGTAAalignmentplotGSM278334-4059AT5G40520.2 cdna:known chromosome:TAIR10:5:16231254:16234316:-1 gene:AT5G40520 transcript:AT5G40520.2213380.0540.01136363.5
5'     CTATCATCATCATCCTCGTAA        3'
| |||||||||||| ||o| |
3' AGTAG-TAGTAGTAGTAGTAGTAGTAATAGTA 5'
106Arabidopsis thalianaTGAATCGATTTGGCCGGGTCalignmentplotGSM278334-4059AT3G60750.1 cdna:known chromosome:TAIR10:3:22453719:22457152:1 gene:AT3G60750 transcript:AT3G60750.1224980.0231.54
5'     TGAATCGATTTGGCCGGGTC         3'
|||| ||o||||||| o||
3' ATCTTCTTA-CTGAACCGGCGTAGTTGTTGTC 5'
107Arabidopsis thalianaAGCCATCATCATGTTCCTGTalignmentplotGSM278334-4059AT2G24500.1 cdna:known chromosome:TAIR10:2:10401035:10402934:-1 gene:AT2G24500 transcript:AT2G24500.1111670.02224
5'     AGCCATCATCATGTTCCTGT         3'
| |||||||| ||| ||||
3' GATCTGGGTAGTAGAACATGGACCTCCAATCT 5'
108Arabidopsis thalianaTCATCTTCATCATCATCGTCAalignmentplotGSM278334-4059AT4G12100.1 cdna:known chromosome:TAIR10:4:7246422:7248127:-1 gene:AT4G12100 transcript:AT4G12100.1012950.05222
5'     TCATCTTCATCATCATCGTCA        3'
| |||o|||||||||||o|||
3' TCAAATTAGGAGTAGTAGTAGTAGTAGATAGG 5'
109Arabidopsis thalianaTTTTGGAAATTTGTCCTTACGalignmentplotGSM278334-4059AT3G09360.1 cdna:known chromosome:TAIR10:3:2873449:2878591:1 gene:AT3G09360 transcript:AT3G09360.1219530.04223.5
5'     TTTTGGAAATTTGTCCTTACG        3'
|||||o||||o|||| |o| |
3' CGGCAAAACTTTTAGACAGAAGTACAGCATAC 5'
110Arabidopsis thalianaTGAGAAGAAGAAGAAGAAAAalignmentplotGSM278334-4059AT1G03190.1 cdna:known chromosome:TAIR10:1:775527:780027:1 gene:AT1G03190 transcript:AT1G03190.12350.0460.00934391.5
5'     TGAGAAGAAGAAGAAGAAAA         3'
o||||||||||||||||||
3' TCTTCTTCTTCTTCTTCTTCTTTTAAAACGCA 5'
111Arabidopsis thalianaTCCTCTGTATCTTCGTTGTCAalignmentplotGSM278334-4059AT4G10710.1 cdna:known chromosome:TAIR10:4:6601989:6606354:-1 gene:AT4G10710 transcript:AT4G10710.1232870.03223.5
5'     TCCTCTGTATCTTCGTTGTCA        3'
|||||| | ||o|||o|o|||
3' GAGAAGGAGAGA-AGGAGCGATAGTCTGAGTT 5'
112Arabidopsis thalianaTCATCATCATCATCATCTTCTalignmentplotGSM278334-4059AT1G66620.1 cdna:known chromosome:TAIR10:1:24852806:24854153:-1 gene:AT1G66620 transcript:AT1G66620.129960.0340.01136361
5'     TCATCATCATCATCATCTTCT        3'
|||||||||||||| ||||||
3' TAGTAGTAGTAGTAGTAGAAGAAGAAGAAGTC 5'
113Arabidopsis thalianaTCATCATCATCATCATCTTCTalignmentplotGSM278334-4059AT1G66620.1 cdna:known chromosome:TAIR10:1:24852806:24854153:-1 gene:AT1G66620 transcript:AT1G66620.12999040.01136360
5'     TCATCATCATCATCATCTTCT        3'
|||||||||||||||||||||
3' TAGTAGTAGTAGTAGTAGTAGAAGAAGAAGAA 5'
114Arabidopsis thalianaTCATCATCATCATCATCTTCTalignmentplotGSM278334-4059AT1G66620.1 cdna:known chromosome:TAIR10:1:24852806:24854153:-1 gene:AT1G66620 transcript:AT1G66620.1210020.0140.01136361
5'     TCATCATCATCATCATCTTCT        3'
||||||||||||||||| |||
3' TAGTAGTAGTAGTAGTAGTAGTAGAAGAAGAA 5'
115Arabidopsis thalianaGACGAAGAAGATGGTGATGTGATalignmentplotGSM278334-4059AT5G66800.1 cdna:known chromosome:TAIR10:5:26671423:26672514:1 gene:AT5G66800 transcript:AT5G66800.123750.0360.00934394
5'     GACGAAGAAGATGGTGATGTGAT      3'
|| ||||||||||o||| o |||
3' TCTTCTTCTTCTTCTACTACTCTTCTAACCAC 5'
116Arabidopsis thalianaCCTTTGGCACCTTTGTTGGCalignmentplotGSM278334-4059AT5G60390.3 cdna:known chromosome:TAIR10:5:24288664:24290856:1 gene:AT5G60390 transcript:AT5G60390.3213990.0472.333334
5'     CCTTTGGCACCTTTGTTGGC         3'
| |||||||||o|| || o|
3' AGTAGTAAACCGTGGGAAGAAGTGACGTCGGA 5'
117Arabidopsis thalianaTAACTAAACATTGGTGTAGTAalignmentplotGSM278334-4059AT2G31585.1 cdna:known chromosome:TAIR10:2:13446002:13446729:1 gene:AT2G31585 transcript:AT2G31585.126470.0320.6666673.5
5'     TAACTAAACATTGGTGTAGTA        3'
o|||||||||| o|||||o |
3' TTAAGTTGATTTGTATTCACATTCTGAAAAGT 5'
118Arabidopsis thalianaGATGATGATGATACTCAGGAalignmentplotGSM278334-4059AT2G36890.1 cdna:known chromosome:TAIR10:2:15485779:15487277:1 gene:AT2G36890 transcript:AT2G36890.107720.01223
5'     GATGATGATGATACTCAGGA         3'
|||||||||||| ||| ||
3' ACTACTACTACTACTAGTAGTACTAGTGCTAC 5'
119Arabidopsis thalianaGAGAAGATGAAGCTGTTCTGalignmentplotGSM278334-4059AT2G32500.1 cdna:known chromosome:TAIR10:2:13794426:13797227:-1 gene:AT2G32500 transcript:AT2G32500.118990.03224
5'     GAGAAGATGAAGCTGTTCTG         3'
||||| |||||| |||||
3' GTGACTCTT-TACTTCTCGAAGACTGAAAAGA 5'
120Arabidopsis thalianaCCTCGTGGTCGAGTGATGTGalignmentplotGSM278334-4059AT5G63030.1 cdna:known chromosome:TAIR10:5:25286223:25287694:1 gene:AT5G63030 transcript:AT5G63030.11720224
5'     CCTCGTGGTCGAGTGATGTG         3'
|||| || |||||| ||||
3' TACAGGAG-ACGAGCTCAAAACACGGTTAGAA 5'
121Arabidopsis thalianaCTATCATCATCATCCTCGTAAalignmentplotGSM278334-4059AT3G14900.1 cdna:known chromosome:TAIR10:3:5013291:5015292:-1 gene:AT3G14900 transcript:AT3G14900.1213490.0140.01136363
5'     CTATCATCATCATCCTCGTAA        3'
| |||||||||||| |||| |
3' AGTAG-TAGTAGTAGTAGTAGCAGTAACAGTC 5'
122Arabidopsis thalianaTTCTTGCATATGTTCTTTATCalignmentplotGSM278334-4059AT3G25545.1 cdna:known chromosome:TAIR10:3:9276845:9278629:1 gene:AT3G25545 transcript:AT3G25545.117740223.5
5'     TTCTTGCATATGTTCTTTATC        3'
|||o| | ||||||||||| |
3' TTACAAGGA-GAATACAAGAAATCGACCGTGG 5'
123Arabidopsis thalianaTCTATCTTCTTCGTCTTCGATalignmentplotGSM278334-4059AT5G63650.1 cdna:known chromosome:TAIR10:5:25481517:25483719:-1 gene:AT5G63650 transcript:AT5G63650.1212020.0440.005698013
5'     TCTATCTTCTTCGTCTTCGAT        3'
||| |||||||| |||||o|o
3' AAGAAGA-AGAAGAAGAAGAAGTTGGAGCAGG 5'
124Arabidopsis thalianaACCCAATCTCTACTTCAGTCTalignmentplotGSM278334-4059AT2G11890.2 cdna:known chromosome:TAIR10:2:4802783:4804375:1 gene:AT2G11890 transcript:AT2G11890.224960.01213.5
5'     ACCCAATCTCTACTTCAGTCT        3'
|| |||||||o ||||| |||
3' GTTATGAGTTAGAGGAGAAGT-AGAAGGAGGT 5'
125Arabidopsis thalianaCTTGTGGAGAGGAAGCAAGAalignmentplotGSM278334-4059AT3G07860.1 cdna:known chromosome:TAIR10:3:2507880:2509509:1 gene:AT3G07860 transcript:AT3G07860.124920.02222.5
5'     CTTGTGGAGAGGAAGCAAGA         3'
|||||||||||o| | ||||
3' TTCAGAACACCTCTCTTGCTTTCTCTGCTACG 5'
126Arabidopsis thalianaGGTCGAGTGAAGTGATCGAGTalignmentplotGSM278334-4059AT4G33010.2 cdna:known chromosome:TAIR10:4:15926670:15931332:-1 gene:AT4G33010 transcript:AT4G33010.2234050.05424
5'     GGTCGAGTGAAGTGATCGAGT        3'
o ||||o||||o|o|| ||||
3' TACATAAGCTTACTTTATTATCTCATTCTCTG 5'
127Arabidopsis thalianaTTCGCTTGCAGAGAGAAATCACalignmentplotGSM278334-4059AT2G39675.1 cdna:known chromosome:TAIR10:2:16537288:16538277:-1 gene:AT2G39675 transcript:AT2G39675.10379015151.5
5'     TTCGCTTGCAGAGAGAAATCAC       3'
|||||||| |||||o|||||||
3' AGATAAGCGAACATCTCTTTTTAGTGTTGTTT 5'
128Arabidopsis thalianaTTGGCATTCTGTCCACCTCCalignmentplotGSM278334-4059AT1G10200.1 cdna:known chromosome:TAIR10:1:3346390:3347885:-1 gene:AT1G10200 transcript:AT1G10200.126610.03223.5
5'     TTGGCATTCTGTCCACCTCC         3'
o|||||||| ||| |||||
3' GAACCGCCGTAAGAGAGGAGGAGGAAGCTCGA 5'
129Arabidopsis thalianaTCATCATCATCATCATCTTCTalignmentplotGSM278334-4059AT5G08600.2 cdna:novel chromosome:TAIR10:5:2786187:2790241:1 gene:AT5G08600 transcript:AT5G08600.22449040.01136360
5'     TCATCATCATCATCATCTTCT        3'
|||||||||||||||||||||
3' TAGTAGTAGTAGTAGTAGTAGAAGACTGAGGT 5'
130Arabidopsis thalianaTGACCTGCCAAAGGAGAGTTGalignmentplotGSM278334-4059AT1G19100.1 cdna:known chromosome:TAIR10:1:6594930:6601355:1 gene:AT1G19100 transcript:AT1G19100.1224350.01223.5
5'     TGACCTGCCAAAGGAGAGTTG        3'
o|||| ||||||oo||||| |
3' CTATGCTGGTCGGTTTTTTCTCA-CAAAAAAA 5'
131Arabidopsis thalianaACTCATAAGATCGTGACACGTalignmentplotGSM278334-4059AT5G02960.1 cdna:known chromosome:TAIR10:5:693079:694515:-1 gene:AT5G02960 transcript:AT5G02960.126540.02223.5
5'     ACTCATAAGATCGTGACACGT        3'
||||||||o|| ||o||||o
3' TTTTTGAGTATTTTA-CATTGTGTTTTAGTTC 5'
132Arabidopsis thalianaTAAAGTCAATAATACCTTGAAGalignmentplotGSM278335-4060AT3G09820.1 cdna:known chromosome:TAIR10:3:3011990:3014944:1 gene:AT3G09820 transcript:AT3G09820.101294034174
5'     TAAAGTCAATAATACCTTGAAG       3'
o| | ||||||||| |||o|||
3' TTGTGTGTGAGTTATTATCGAATTTCGGAGTT 5'
133Arabidopsis thalianaTGACAGAAGAAAGAGAGCACalignmentplotGSM278335-4060AT4G19150.1 cdna:known chromosome:TAIR10:4:10471331:10472742:-1 gene:AT4G19150 transcript:AT4G19150.1010180.0411113.5
5'     TGACAGAAGAAAGAGAGCAC         3'
| |||||| |||||o||||
3' AGTAAATGTCTT-TTTCTTTCGTTATGTCTCT 5'
134Arabidopsis thalianaGGAAGAGGCAGTGCATGGGTAalignmentplotGSM278335-4060AT3G08580.2 cdna:known chromosome:TAIR10:3:2605442:2607787:-1 gene:AT3G08580 transcript:AT3G08580.2213130.0231.53
5'     GGAAGAGGCAGTGCATGGGTA        3'
||||||o|||o||| |o||o|
3' TCCTCCTTCTTCGTTACGAATCCGTGGAGGAC 5'
135Arabidopsis thalianaCTGGGTTGTGATGTTCTGCAalignmentplotGSM278335-4060AT1G73600.1 cdna:known chromosome:TAIR10:1:27670626:27673572:1 gene:AT1G73600 transcript:AT1G73600.1217250.01312.5
5'     CTGGGTTGTGATGTTCTGCA         3'
||||||| ||||| |||o||
3' CCATGACCCAAAACTACTAGATGTATGTATGG 5'
136Arabidopsis thalianaAAGCACATCCTCTTGCTTCCalignmentplotGSM278335-4060AT1G48860.2 cdna:known chromosome:TAIR10:1:18068725:18071365:-1 gene:AT1G48860 transcript:AT1G48860.2017660.0122113.5
5'     AAGCACATCCTCTTGCTTCC         3'
||o||| | ||||||||| |
3' TTTGTTTGTG-ATGAGAACGAAAGATTATTAC 5'
137Arabidopsis thalianaTGACAGAAGAAAGAGAGCACalignmentplotGSM278335-4060AT1G27360.3 cdna:known chromosome:TAIR10:1:9501777:9503869:1 gene:AT1G27360 transcript:AT1G27360.3012500174.251
5'     TGACAGAAGAAAGAGAGCAC         3'
|||||||||| |||||||||
3' TCCAACTGTCTTCTCTCTCTCGTGCCACCTAT 5'
138Arabidopsis thalianaTTCGCTTGCAGAGAGAAATCACalignmentplotGSM278335-4060AT2G27400.1 cdna:known chromosome:TAIR10:2:11721539:11722468:-1 gene:AT2G27400 transcript:AT2G27400.10379026261.5
5'     TTCGCTTGCAGAGAGAAATCAC       3'
|||||||| |||||o|||||||
3' GAGTAAGCGAACATCTCTTTTTAGTGTTGTTT 5'
139Arabidopsis thalianaTTCCACAGCTTTCTTGAACTTalignmentplotGSM278335-4060AT5G61440.1 cdna:known chromosome:TAIR10:5:24707500:24708893:1 gene:AT5G61440 transcript:AT5G61440.127190222.5
5'     TTCCACAGCTTTCTTGAACTT        3'
|o| || ||||||||||||||
3' GAATAGGTTG-CGAAAGAACTTGAATAACTAT 5'
140Arabidopsis thalianaACTCGACCAGGGGGTCGAGTalignmentplotGSM278335-4060AT5G11040.1 cdna:known chromosome:TAIR10:5:3495287:3500922:1 gene:AT5G11040 transcript:AT5G11040.1213600.04334
5'     ACTCGACCAGGGGGTCGAGT         3'
|||||| |||||o| |o| |
3' ACCCTGAGCTTGTCCCTCTGTT-ACCTTACTA 5'
141Arabidopsis thalianaTCTTCTTCGTCGCCATTACTalignmentplotGSM278335-4060AT1G02090.2 cdna:known chromosome:TAIR10:1:387278:389647:-1 gene:AT1G02090 transcript:AT1G02090.227930.0420.6666672.5
5'     TCTTCTTCGTCG-CCATTACT        3'
|||||||||| | ||||o|||
3' GGGTAGAAGAAGCATCAGGTAGTGAGGTGAAC 5'
142Arabidopsis thalianaGCCGCCATATCTCTCCGCCGTCalignmentplotGSM278335-4060AT1G76730.1 cdna:known chromosome:TAIR10:1:28802925:28804784:-1 gene:AT1G76730 transcript:AT1G76730.122930444
5'     GCCGCCATATCTCTCCGCCGTC       3'
|||||||||| ||||o ||o|
3' TCAGAGGCGGTATAG-GAGGTAGCGGCGGCGC 5'
143Arabidopsis thalianaTTTGGATTGAAGGGAGCTCTAalignmentplotGSM278335-4060AT5G06100.3 cdna:known chromosome:TAIR10:5:1837907:1840417:1 gene:AT5G06100 transcript:AT5G06100.3212600.01412.5
5'     TTTGGATTGAAGGGAGCTCTA        3'
||||| ||||||||||||o|
3' CTTATAACCTTACTTCCCTCGAGGTCGAAGTG 5'
144Arabidopsis thalianaACTGTATATATGTAAGTGACAalignmentplotGSM278335-4060AT4G23895.2 cdna:known chromosome:TAIR10:4:12422105:12424363:1 gene:AT4G23895 transcript:AT4G23895.209620.03844
5'     ACTGTATATATGTAAGTGACA        3'
| |o||||o||o|||o||| |
3' TTCGTAATATATGTATATTTACTTTTGATAGG 5'
145Arabidopsis thalianaTTTCGTTGTCTGTTCGACCTTalignmentplotGSM278335-4060AT5G49330.1 cdna:known chromosome:TAIR10:5:19998952:20001378:-1 gene:AT5G49330 transcript:AT5G49330.103860.0125253
5'     TTTCGTTGTCTGTTCGACCTT        3'
||||||||||||||| |||
3' AATTAAAGCAACAGACAAGAAGGACCATCTAC 5'
146Arabidopsis thalianaATTGGTAGTGGATAAGGGGGCalignmentplotGSM278335-4060AT2G39810.1 cdna:known chromosome:TAIR10:2:16612800:16618057:1 gene:AT2G39810 transcript:AT2G39810.1222710.01333.5
5'     ATTGGTAGTGGATAAGGGGGC        3'
|||o||||||| |||||oo|
3' GCCTTAATCATCACCGTTTCCCTTGACTTCTT 5'
147Arabidopsis thalianaTTGCTCGACCCGGGGGTCGAGTalignmentplotGSM278335-4060AT5G31753.1 cdna:pseudogene chromosome:TAIR10:5:11696730:11697699:1 gene:AT5G31753 transcript:AT5G31753.11243051.666674
5'     TTGCTCGACCCGGGGGTCGAGT       3'
|o|||||||| o||||||||
3' GGTGTATGAGCTGGGGGTCCAGCTCACTGAAA 5'
148Arabidopsis thalianaTCACTCGACCACGAGGTCGAGTGTalignmentplotGSM278335-4060AT5G31753.1 cdna:pseudogene chromosome:TAIR10:5:11696730:11697699:1 gene:AT5G31753 transcript:AT5G31753.11243051.666674
5'     TCACTCGACCACGAGGTCGAGTGT     3'
| |||||||| | ||||||||||
3' GTGTA-TGAGCTGGGGGTCCAGCTCACTGAAA 5'
149Arabidopsis thalianaTCCGGAGGGATTCCTTCCTTalignmentplotGSM278335-4060AT4G05320.5 cdna:known chromosome:TAIR10:4:2718170:2720133:1 gene:AT4G05320 transcript:AT4G05320.524200.0130.63
5'     TCCGGAGGGATTCCTTCCTT         3'
||||||||o|| ||o|| ||
3' GACCAGGCCTCCTTATGGGAGAAACAGAACCT 5'
150Arabidopsis thalianaTTAGATGACCATCAACAAACTalignmentplotGSM278335-4060AT1G02860.1 cdna:known chromosome:TAIR10:1:635144:637262:1 gene:AT1G02860 transcript:AT1G02860.122690178.51
5'     TTAGATGACCATCAACAAACT        3'
||||||||||||||||||||
3' TTTAAATCTACTGGTAGTTGTTTGTTTAAGTC 5'
151Arabidopsis thalianaTCGGACCAGGCTTCATTCCCCalignmentplotGSM278335-4060AT1G52150.1 cdna:known chromosome:TAIR10:1:19409711:19414678:-1 gene:AT1G52150 transcript:AT1G52150.1212790.01227.333332.5
5'     TCGGACCAGGCTTCATTCCCC        3'
o||||||||||||||||||
3' CTTAGGCCTGGTCCGAAGTAAGGTCCGTAGAC 5'
152Arabidopsis thalianaTTCCACAGCTTTCTTGAACTTalignmentplotGSM278335-4060AT5G27850.1 cdna:known chromosome:TAIR10:5:9873152:9874598:1 gene:AT5G27850 transcript:AT5G27850.125420.0332323
5'    TTCCAC-AGCTTTCTTGAACTT        3'
|||| | ||||||||oo|||||
3' CGAAAGGAGATCGAAAGAGTTTGAAGGAAGGG 5'
153Arabidopsis thalianaCTTGTGGAGAGGAAGCAAGAalignmentplotGSM278335-4060AT4G16980.1 cdna:known chromosome:TAIR10:4:9556978:9557812:1 gene:AT4G16980 transcript:AT4G16980.121250.01332
5'     CTTGTGGAGAGGAAGCAAGA         3'
||||||o||||o||| ||||
3' TTCCGAACACTTCTCTTTC-TTCTCCGGTACC 5'
154Arabidopsis thalianaTCCCAAATGTAGACAAAGCAalignmentplotGSM278335-4060AT1G62860.1 cdna:pseudogene chromosome:TAIR10:1:23274676:23277017:-1 gene:AT1G62860 transcript:AT1G62860.124250221
5'     TCCCAAATGTAGACAAAGCA         3'
| ||||||||||||||||||
3' TAGAACGGTTTACATCTGTTTCGTTTCCTGTT 5'
155Arabidopsis thalianaTCGACCTGGGGGTCGAGCGAalignmentplotGSM278335-4060AT1G15405.1 cdna:known chromosome:TAIR10:1:5297875:5298166:-1 gene:AT1G15405 transcript:AT1G15405.12570.03993.5
5'     TCGACCTGGGGGTCGAGCGA         3'
o|||||o| |||o||||| |
3' TCTAGGCTGGGCACCCGGCTCGGTCACAAGGT 5'
156Arabidopsis thalianaGAGGAGGAGGAGCACCACCGTalignmentplotGSM278335-4060AT1G13930.1 cdna:known chromosome:TAIR10:1:4761042:4761725:1 gene:AT1G13930 transcript:AT1G13930.123920165.333333
5'     GAGGAGGAGGAGCACCACCGT        3'
||||||||||| ||||| |oo
3' CAGCCTCCTCCTCCTGGTGGTCGTGGCCACCT 5'
157Arabidopsis thalianaTATCTCTGCAACTGCAACTGCalignmentplotGSM278335-4060AT4G30990.1 cdna:novel chromosome:TAIR10:4:15084098:15097920:1 gene:AT4G30990 transcript:AT4G30990.116370073.53.5
5'     TATCTCTGCAACTGCAA-CTGC       3'
|||||||| ||||o||| || |
3' GTATATAGAGACCTTGATGTTCGAAGGCCAAG 5'
158Arabidopsis thalianaTGACAGAAGAAAGAGAGCACalignmentplotGSM278335-4060AT1G53160.1 cdna:known chromosome:TAIR10:1:19806421:19807301:1 gene:AT1G53160 transcript:AT1G53160.106020442
5'     TGACAGAAGAAAGAGAGCAC         3'
|||||||||| ||||||||
3' ATCTACTGTCTTCTCTCTCTCGTCTGTCGAAG 5'
159Arabidopsis thalianaATGATGCTGTTGGGTTTCTCalignmentplotGSM278335-4060AT3G04290.1 cdna:known chromosome:TAIR10:3:1133320:1136316:-1 gene:AT3G04290 transcript:AT3G04290.1210970.02662.5
5'     ATGATGCTGTTGGGTTTCTC         3'
||||| ||o|||| ||||||
3' TTGCTACTAGGATAACCGAAAGAGACAGCCTA 5'
160Arabidopsis thalianaAGCTGGCTCTTCCGGGCGAAalignmentplotGSM278335-4060AT2G32060.1 cdna:known chromosome:TAIR10:2:13639016:13640316:-1 gene:AT2G32060 transcript:AT2G32060.12940.01313
5'     AGCTGGCTCTTCCGGGCGAA         3'
|||||| | |||||oo||||
3' AAACTCGACC-AAAAGGCTTGCTTCTCTTCGT 5'
161Arabidopsis thalianaACTTTTCACTGTTTGATTCGTalignmentplotGSM278335-4060AT3G20300.1 cdna:known chromosome:TAIR10:3:7079617:7081921:-1 gene:AT3G20300 transcript:AT3G20300.1112350663.5
5'     ACTTTTCACTGTTTGATTCGT        3'
| |o||||||o|o|||||| |
3' GGTATTAGAAGTGATAGACTAAG-AGGTAATA 5'
162Arabidopsis thalianaTTGACAGAAGATAGAGAGCACalignmentplotGSM278335-4060AT1G27370.1 cdna:known chromosome:TAIR10:1:9505201:9508280:-1 gene:AT1G27370 transcript:AT1G27370.1023790112.751
5'     TTGACAGAAGATAGAGAGCAC        3'
||||||||||| |||||||||
3' CATCAACTGTCTTCTCTCTCTCGTGACATCTT 5'
163Arabidopsis thalianaCTCGACCTGAGGGTCGAGTGGTalignmentplotGSM278335-4060AT4G34050.1 cdna:known chromosome:TAIR10:4:16310775:16312216:1 gene:AT4G34050 transcript:AT4G34050.127860.031054
5'     CTCGACCTGAGGGTCGAGTGGT       3'
||||| |o||||||| ||oo|o
3' TCTAGAGCTAGGCTCCCAG-TCGTCGTTCTCG 5'
164Arabidopsis thalianaTTGGACTGAAGGGAGCTCCalignmentplotGSM278335-4060AT4G18390.1 cdna:known chromosome:TAIR10:4:10162953:10165562:-1 gene:AT4G18390 transcript:AT4G18390.1213870.0252.52.5
5'     TTGGACTGAAGGGAGCTCC          3'
||||||||||||| |o||
3' ACTTAACCTGACTTCCCAGGGGGACAACTTTG 5'
165Arabidopsis thalianaTTGGACTGAAGGGAGCTCCCTalignmentplotGSM278335-4060AT4G18390.1 cdna:known chromosome:TAIR10:4:10162953:10165562:-1 gene:AT4G18390 transcript:AT4G18390.1213870.0152.53
5'     TTGGACTGAAGGGAGCTCCCT        3'
||||||||||||| | ||||
3' ACTTAACCTGACTTCCCAGG-GGGACAACTTT 5'
166Arabidopsis thalianaATTGCAATGGCAACACTAAAalignmentplotGSM278335-4060AT5G07250.2 cdna:known chromosome:TAIR10:5:2274260:2275990:-1 gene:AT5G07250 transcript:AT5G07250.2010280.01843.5
5'     ATTGCAATGGCAACACTAAA         3'
|||o|| | | |||||||||
3' GTGTTAATGTGA-CTTTGTGATTTTTTATTGT 5'
167Arabidopsis thalianaTGGGTGGTGATCATATAAGATalignmentplotGSM278335-4060AT1G69770.1 cdna:known chromosome:TAIR10:1:26248318:26253585:-1 gene:AT1G69770 transcript:AT1G69770.1220370992
5'     TGGGTGGTGATCATATAAGAT        3'
|||||o|||||||||||||o
3' ATTCTCCCACTACTAGTATATTCTGTACGAAA 5'
168Arabidopsis thalianaTTCGCTTGCAGAGAGAAATCACalignmentplotGSM278335-4060AT2G39681.1 cdna:known chromosome:TAIR10:2:16539384:16540417:-1 gene:AT2G39681 transcript:AT2G39681.10418083831.5
5'     TTCGCTTGCAGAGAGAAATCAC       3'
|||||||| |||||o|||||||
3' TAGTAAGCGAACCTCTCTTTTTAGTGTTTTGG 5'
169Arabidopsis thalianaTGTCTTCATCGTCATCACAAalignmentplotGSM278335-4060AT4G17100.1 cdna:known chromosome:TAIR10:4:9609910:9612655:-1 gene:AT4G17100 transcript:AT4G17100.122210.0131.52.5
5'     TGTCTTCATCGTCATCACAA         3'
||o|||||||o|||o||| |
3' CTCAACGGAAGTAGTAGTGGTGGTAGCAGAGG 5'
170Arabidopsis thalianaTGATTGAGCCGTGTCAATATCalignmentplotGSM278335-4060AT3G60630.1 cdna:known chromosome:TAIR10:3:22410365:22412608:-1 gene:AT3G60630 transcript:AT3G60630.101056092921
5'     TGATTGAGCCGTGTCAATATC        3'
|||||||||||o|o|||||||
3' CAACACTAACTCGGCGCGGTTATAGGGAACGC 5'
171Arabidopsis thalianaTGAGAAGAAGAAGAAGAAAAalignmentplotGSM278335-4060AT5G11000.1 cdna:known chromosome:TAIR10:5:3479029:3480425:-1 gene:AT5G11000 transcript:AT5G11000.11500.04553
5'     TGAGAAGAAGAAGAAGAAAA         3'
o|||||||||||||o |||
3' ACCCCTTCTTCTTCTTCTTTCTTTCTTATTTT 5'
172Arabidopsis thalianaTTGAGCCGTGCCAATATCACGalignmentplotGSM278335-4060AT3G60630.1 cdna:known chromosome:TAIR10:3:22410365:22412608:-1 gene:AT3G60630 transcript:AT3G60630.121053023232.5
5'     TTGAGCCGTGCCAATATCACG        3'
||||||||o||||||||| |
3' CACTAACTCGGCGCGGTTATAGGGAACGCGCT 5'
173Arabidopsis thalianaATCGAAGGAGATGGAGGACGalignmentplotGSM278335-4060AT3G26200.1 cdna:known chromosome:TAIR10:3:9589282:9591179:1 gene:AT3G26200 transcript:AT3G26200.1014450.0318184
5'     ATCGAAGGAGATGGAGGACG         3'
|||o|||o|| |oo||o||o
3' AGGTTAGTTTCTTC-ATTTCTTGTAATTCATT 5'
174Arabidopsis thalianaACGGTTCCGAGTTCGGGTTCGalignmentplotGSM278335-4060AT4G00750.1 cdna:known chromosome:TAIR10:4:314353:317675:1 gene:AT4G00750 transcript:AT4G00750.1110700224
5'     ACGGTTCCGAGTTCGGGTTCG        3'
|| |o|||||||| |o| |||
3' ACTCTGACGAGGCTCAA-CTCTAGCAGAGATC 5'
175Arabidopsis thalianaCGACCCAAGAGCTTTGGGTCTalignmentplotGSM278335-4060AT5G16990.1 cdna:known chromosome:TAIR10:5:5581658:5584029:-1 gene:AT5G16990 transcript:AT5G16990.1210610.01443
5'    CGAC-CCAAGAGCTTTGGGTCT        3'
|o|| ||||||o|||||||| |
3' GTGGTTGAGGTTCTTGAAACCCATAAACAGCA 5'
176Arabidopsis thalianaTTCCACAGCTTTCTTGAACTTalignmentplotGSM278335-4060AT4G24150.1 cdna:known chromosome:TAIR10:4:12535972:12539387:1 gene:AT4G24150 transcript:AT4G24150.10848012123
5'    TTCCACA-GCTTTCTTGAACTT        3'
||||||| ||||||||||||
3' ACTAAGGTGTACGAAAGAACTTGCTCCTGCCG 5'
177Arabidopsis thalianaTTAGATTCACGCACAAACTCGalignmentplotGSM278335-4060AT1G31280.1 cdna:known chromosome:TAIR10:1:11181711:11185344:1 gene:AT1G31280 transcript:AT1G31280.103233076761
5'     TTAGATTCACGCACAAACTCG        3'
||||||||||||||||||||
3' GGTTAATCTAAGTGCGTGTTTGAGGAAAGATG 5'
178Arabidopsis thalianaTCCAAAGGGATCGCATTGATCCalignmentplotGSM278335-4060AT1G12820.1 cdna:known chromosome:TAIR10:1:4368760:4371293:-1 gene:AT1G12820 transcript:AT1G12820.101895014142
5'     TCCAAAGGGATCGCATTGATCC       3'
|||||||||||||||||| | |
3' CTGTAGGTTTCCCTAGCGTAACAAAGCATGGA 5'
179Arabidopsis thalianaTACAAGCAGTTGCAGTTGCAalignmentplotGSM278335-4060ATCG00020.1 cdna:known chromosome:TAIR10:Pt:383:1444:-1 gene:ATCG00020 transcript:ATCG00020.124630.0212123
5'     TACAAGCAGTTGCAGTTGCA         3'
|| ||||||o||||o||||
3' TCTTTTG-TCGTCAGCGTCGACGTTGTCCTCG 5'
180Arabidopsis thalianaTAGACCATTTGTGAGAAGGGAalignmentplotGSM278335-4060AT3G57230.1 cdna:known chromosome:TAIR10:3:21177423:21180932:1 gene:AT3G57230 transcript:AT3G57230.127960630.5
5'     TAGACCATTTGTGAGAAGGGA        3'
||||||||||||||||||o||
3' ACAGATCTGGTAAACACTCTTCTCTTAAGAAC 5'
181Arabidopsis thalianaTTTCGTTGTCTGTTCGACCTTalignmentplotGSM278335-4060AT2G47460.1 cdna:known chromosome:TAIR10:2:19476337:19479478:1 gene:AT2G47460 transcript:AT2G47460.104020883
5'     TTTCGTTGTCTGTTCGACCTT        3'
||||||||||||||| |||
3' AAATAAAGCAACAGACAAGAGGGACCATCTAC 5'
182Arabidopsis thalianaAAACGACGTCGTTGGTGATTalignmentplotGSM278335-4060AT5G40350.1 cdna:known chromosome:TAIR10:5:16138544:16141134:-1 gene:AT5G40350 transcript:AT5G40350.126710.03553
5'     AAACGACGTCGTTGGTGATT         3'
| ||||||||||||| || |
3' CAACTATGCTGCAGCAACCTCTTATGTATAGG 5'
183Arabidopsis thalianaTGACAGAAGAAAGAGAGCACalignmentplotGSM278335-4060AT3G15270.1 cdna:known chromosome:TAIR10:3:5140365:5141348:-1 gene:AT3G15270 transcript:AT3G15270.106550.0228283
5'     TGACAGAAGAAAGAGAGCAC         3'
|||||||||| |||||||
3' ATCTACTGTCTTCTCTCTCTCGCCCTCCCAAA 5'
184Arabidopsis thalianaTTCGAGGCCTATTAAACCTCTGalignmentplotGSM278335-4060AT5G54770.1 cdna:known chromosome:TAIR10:5:22246592:22248332:1 gene:AT5G54770 transcript:AT5G54770.1211790.0121214
5'     TTCGAGGCCTATTAAACCTCTG       3'
|||o||o| |||||||| o||o
3' TTTCAAGTTCTGTATAATTTGTGGATTTGAGG 5'
185Arabidopsis thalianaTAAGTTAAGATTTGTGAAGAAalignmentplotGSM278335-4060AT1G18090.1 cdna:known chromosome:TAIR10:1:6224501:6227822:1 gene:AT1G18090 transcript:AT1G18090.1018180.01632.5
5'     TAAGTTAAGATTTGTGAAGAA        3'
|||o|||||| ||o|o|||||
3' TAGTATTTAATTCTCAATATTTCTTCGATTCT 5'
186Arabidopsis thalianaGGAATCTTGATGATGCTGCATalignmentplotGSM278335-4060AT4G36920.1 cdna:known chromosome:TAIR10:4:17400847:17403332:1 gene:AT4G36920 transcript:AT4G36920.10134002512.52
5'     GGAATCTTGATGATGCTGCAT        3'
o|||||o|||||||||||||
3' CCTCTCTTAGGACTACTACGACGTCGTAAACA 5'
187Arabidopsis thalianaTCCGGAGGGATTCCTTCCTTalignmentplotGSM278335-4060AT4G05320.6 cdna:known chromosome:TAIR10:4:2718187:2719988:1 gene:AT4G05320 transcript:AT4G05320.624030.0130.63
5'     TCCGGAGGGATTCCTTCCTT         3'
||||||||o|| ||o|| ||
3' GACCAGGCCTCCTTATGGGAGAAACAGAACCT 5'
188Arabidopsis thalianaGGCGCCTCTCCATTGGCAGGalignmentplotGSM278335-4060AT5G19090.1 cdna:known chromosome:TAIR10:5:6387489:6390024:1 gene:AT5G19090 transcript:AT5G19090.1014580.0163.333333.5
5'     GGCGCCTCTCCATTGGCAGG         3'
o |||||| |||||||| ||
3' GTGGTGGCGGAG-GGTAACCGGCCTTTGGACC 5'
189Arabidopsis thalianaTTCCACAGCTTTCTTGAACTTalignmentplotGSM278335-4060AT2G22840.1 cdna:known chromosome:TAIR10:2:9728756:9731301:1 gene:AT2G22840 transcript:AT2G22840.10792049493
5'    TTCCACA-GCTTTCTTGAACTT        3'
||||||| ||||||||||||
3' CGGAAGGTGTCCGAAAGAACTTGCTACCGCCG 5'
190Arabidopsis thalianaGATGGATATGTCTTCAAGGACalignmentplotGSM278335-4060AT3G58730.1 cdna:known chromosome:TAIR10:3:21718257:21719980:-1 gene:AT3G58730 transcript:AT3G58730.128850.03443
5'     GATGGATATGTCTTCAAGGAC        3'
||o|| |||||||||||o||
3' AGACGTATCTCTACAGAAGTTCTTGGTAAAGG 5'
191Arabidopsis thalianaCTCGCAAATCCCTCGCAGAAalignmentplotGSM278335-4060AT5G14570.1 cdna:known chromosome:TAIR10:5:4695084:4697078:-1 gene:AT5G14570 transcript:AT5G14570.1210810.02443
5'     CTCGCAAATCCCTCGCAGAA         3'
||| |||||| |||| ||||
3' AAGTGAG-GTTTAGAGAGCATCTTTATAGGCC 5'
192Arabidopsis thalianaAAACGACGTCGTTTCGTTCTalignmentplotGSM278335-4060AT5G64700.1 cdna:known chromosome:TAIR10:5:25865172:25866927:-1 gene:AT5G64700 transcript:AT5G64700.1011240.02443.5
5'     AAACGACGTCGTTT-CGTTCT        3'
| |||||o|||||| | ||||
3' AACGTGTGCTGTAGCAAAAGGAAGACATTTAG 5'
193Arabidopsis thalianaTGAGAAGAAGAAGAAGAAAAalignmentplotGSM278335-4060AT2G40520.1 cdna:known chromosome:TAIR10:2:16923068:16925914:1 gene:AT2G40520 transcript:AT2G40520.1217870.03300.04720161.5
5'     TGAGAAGAAGAAGAAGAAAA         3'
o||||||||||||||||||
3' TCTTCTTCTTCTTCTTCTTCTTTTTCTTTTTG 5'
194Arabidopsis thalianaGGTGGTGCGACAGGCTTTGGTalignmentplotGSM278335-4060AT3G18780.1 cdna:known chromosome:TAIR10:3:6474871:6477204:1 gene:AT3G18780 transcript:AT3G18780.1212160.0331.53.5
5'     GGTGGTGCGACAGGCTTTGGT        3'
||||||||o|| |o|o||oo|
3' AAGTCCACCACGTTG-CTGGAATTAGAAGTAC 5'
195Arabidopsis thalianaAAACGACGTCGTTTCGTTCTalignmentplotGSM278335-4060AT4G11080.1 cdna:known chromosome:TAIR10:4:6760867:6763272:-1 gene:AT4G11080 transcript:AT4G11080.121200.01442.5
5'     AAACGACGTCGTTTCGTTCT         3'
||||||| ||||||| |||o
3' AGAGTTTGCTGAAGCAAAGAAAGGGGAACAGA 5'
196Arabidopsis thalianaCATGATCTTGTCTTCCTCTCalignmentplotGSM278335-4060AT1G25570.1 cdna:known chromosome:TAIR10:1:8991826:8995496:-1 gene:AT1G25570 transcript:AT1G25570.1218070441.5
5'     CATGATCTTGTCTTCCTCTC         3'
|||o||| ||||||||||||
3' TTCAGTATTAGTACAGAAGGAGAGGTCTACGT 5'
197Arabidopsis thalianaTACCATCTCTTGAGGAACTTGGalignmentplotGSM278335-4060AT1G07930.1 cdna:known chromosome:TAIR10:1:2458244:2460790:1 gene:AT1G07930 transcript:AT1G07930.1212730.03183.64
5'     TACCATCTCTTGAGGAACTTGG       3'
o||||| |||| |o||| ||||
3' CGTAGTGGTA-AGAAGTTCTTAAACCCGAGGA 5'
198Arabidopsis thalianaTCCACTTCCGTTGTAGCTTCGalignmentplotGSM278335-4060AT4G37685.1 cdna:known chromosome:TAIR10:4:17705049:17706089:1 gene:AT4G37685 transcript:AT4G37685.114640334
5'    TCCACTTCC-GTTGTAGCTTCG        3'
| ||||||| |o||||o|o||o
3' TCTACGTGAAGGACGACATTGGAGTCAGACGT 5'
199Arabidopsis thalianaTCATCATCATCATCATCGTATalignmentplotGSM278335-4060AT1G60220.1 cdna:known chromosome:TAIR10:1:22208332:22212171:1 gene:AT1G60220 transcript:AT1G60220.107970.03602.857141.5
5'     TCATCATCATCATCATCGT-AT       3'
|||||||||||||||||o| ||
3' TAGTAGTAGTAGTAGTAGTAGTAGTAGTTAGT 5'
200Arabidopsis thalianaCTATCATCATCATCCTCGTAAalignmentplotGSM278335-4060AT1G60220.1 cdna:known chromosome:TAIR10:1:22208332:22212171:1 gene:AT1G60220 transcript:AT1G60220.107970.03602.857143.5
5'     CTATCATCATCATCCTCGTAA        3'
| |||||||||||| ||o| |
3' AGTAG-TAGTAGTAGTAGTAGTAGTAGTTAGT 5'
201Arabidopsis thalianaACTGTATATATGTAAGTGACAalignmentplotGSM278335-4060AT1G63330.1 cdna:known chromosome:TAIR10:1:23489840:23491519:1 gene:AT1G63330 transcript:AT1G63330.1112950.0152.54
5'    ACT-GTATATATGTAAGTGACA        3'
| | ||||||||||||o|o ||
3' GTATCATCATATATACATTTATAGTTCAAAAT 5'
202Arabidopsis thalianaGAGCATTGTGGAGATCAAATalignmentplotGSM278335-4060AT1G65060.2 cdna:known chromosome:TAIR10:1:24167202:24171502:-1 gene:AT1G65060 transcript:AT1G65060.2219510.021472.5
5'     GAGCATTGTGGAGATCAAAT         3'
o||||||||||| | |||||
3' GTGTTTCGTAACACCTAT-GTTTACTTGCAAA 5'
203Arabidopsis thalianaTCAATGCATTGAAAGTGACTAalignmentplotGSM278335-4060AT1G63330.1 cdna:known chromosome:TAIR10:1:23489840:23491519:1 gene:AT1G63330 transcript:AT1G63330.127750411
5'     TCAATGCATTGAAAGTGACTA        3'
||||||||||||| |||||||
3' AGCTAGTTACGTAACTTGCACTGATTTAATCC 5'
204Arabidopsis thalianaTTGACAGAAGATAGAGAGCACalignmentplotGSM278335-4060AT5G43270.2 cdna:known chromosome:TAIR10:5:17360305:17363773:-1 gene:AT5G43270 transcript:AT5G43270.2211600103.333331
5'     TTGACAGAAGATAGAGAGCAC        3'
||||||||||| |||||||||
3' CTTAAACTGTCTTCTCTCTCTCGTGGTAGTTC 5'
205Arabidopsis thalianaTCGACCAGGGGGTCGAGTGATalignmentplotGSM278335-4060AT1G70730.3 cdna:known chromosome:TAIR10:1:26669020:26673166:-1 gene:AT1G70730 transcript:AT1G70730.3219130.0451.666674
5'     TCGACCAGGGGGTCGAGTG-AT       3'
||o||||||||oo|o|| | ||
3' TTGTAGTTGGTCCCCTGGTTCTCGTAGGACTC 5'
206Arabidopsis thalianaACTCGACCAGGGGGTCGAGTGalignmentplotGSM278335-4060AT1G70730.3 cdna:known chromosome:TAIR10:1:26669020:26673166:-1 gene:AT1G70730 transcript:AT1G70730.3219150.0351.666674
5'     ACTCGACCAGGGGGTCGAGTG        3'
| ||o||||||||oo|o|| |
3' GTTGT-AGTTGGTCCCCTGGTTCTCGTAGGAC 5'
207Arabidopsis thalianaTGCCTGGCTCCCTGTATGCCalignmentplotGSM278335-4060AT2G28350.1 cdna:known chromosome:TAIR10:2:12114331:12116848:1 gene:AT2G28350 transcript:AT2G28350.121340025251
5'     TGCCTGGCTCCCTGTATGCC         3'
||||||||||||||||| ||
3' TCGAACGGACCGAGGGACATAAGGACGTCCTC 5'
208Arabidopsis thalianaTTGGACTGAAGGGAGCTCCalignmentplotGSM278335-4060AT3G15030.2 cdna:known chromosome:TAIR10:3:5061681:5064038:1 gene:AT3G15030 transcript:AT3G15030.2214870268.666672.5
5'     TTGGACTGAAGGGAGCTCC          3'
o|||||||||||| o|o||
3' CATTGACCTGACTTCCCCTGGGGAGACTCTTA 5'
209Arabidopsis thalianaTTGGACTGAAGGGAGCTCCCTalignmentplotGSM278335-4060AT3G15030.2 cdna:known chromosome:TAIR10:3:5061681:5064038:1 gene:AT3G15030 transcript:AT3G15030.2214870.03268.666673.5
5'     TTGGACTGAAGGGAGCTCCCT        3'
o|||||||||||| o|o|| |
3' CATTGACCTGACTTCCCCTGGGG-AGACTCTT 5'
210Arabidopsis thalianaTGACAGAAGAAAGAGAGCACalignmentplotGSM278335-4060AT5G43270.2 cdna:known chromosome:TAIR10:5:17360305:17363773:-1 gene:AT5G43270 transcript:AT5G43270.2211590.0172.333331
5'     TGACAGAAGAAAGAGAGCAC         3'
|||||||||| |||||||||
3' TTAAACTGTCTTCTCTCTCTCGTGGTAGTTCT 5'
211Arabidopsis thalianaTGTTGCCGTAGCTGCAGCGGCalignmentplotGSM278335-4060AT3G16100.1 cdna:known chromosome:TAIR10:3:5459172:5460790:1 gene:AT3G16100 transcript:AT3G16100.10686023234
5'     TGTTGCCGTAGCTGCAGCGGC        3'
|||||||| |||o |||| o|
3' AGAAACAACGGC-TCGGGGTCGATGTAGTTAC 5'
212Arabidopsis thalianaACCATCAATTCATCGTGGCCGalignmentplotGSM278335-4060AT4G18120.1 cdna:known chromosome:TAIR10:4:10038126:10042248:1 gene:AT4G18120 transcript:AT4G18120.1026080178.54
5'     ACCATCAATTCATCGTGGCCG        3'
|||||||||||| |o|| | o
3' GTGTTGGTAGTTAAGT-GTACAGATCTTGTTA 5'
213Arabidopsis thalianaTCGCTTGGTGCAGGTCGGGAalignmentplotGSM278335-4060AT1G48410.2 cdna:known chromosome:TAIR10:1:17886098:17892586:-1 gene:AT1G48410 transcript:AT1G48410.225220932.5
5'     TCGCTTGGTGCAGGTCGGGA         3'
| |||||o||||| ||||||
3' CTCCATCGAACTACGTCGAGCCCTTGACTAAC 5'
214Arabidopsis thalianaTCTTGCTTAAATGAGTATTCCAalignmentplotGSM278335-4060AT3G25795.1 cdna:known chromosome:TAIR10:3:9417551:9418705:-1 gene:AT3G25795 transcript:AT3G25795.108880.01880.5
5'     TCTTGCTTAAATGAGTATTCCA       3'
|||||||o||||||||||||||
3' TTGTAGAACGAGTTTACTCATAAGGTACCTCT 5'
215Arabidopsis thalianaACCCTCACAAATTCCTCGCAalignmentplotGSM278335-4060AT4G22840.1 cdna:known chromosome:TAIR10:4:11991497:11993770:-1 gene:AT4G22840 transcript:AT4G22840.112750.02334
5'     ACCCTCACAAATTCCTCGCA         3'
|| | |||||||||||||
3' TAGATGCG-GTGTTTAAGGAGCTAGGCGGTTG 5'
216Arabidopsis thalianaGATGATGATGATACTCAGGAalignmentplotGSM278335-4060AT1G13430.1 cdna:known chromosome:TAIR10:1:4606500:4607747:1 gene:AT1G13430 transcript:AT1G13430.104460.03223.5
5'     GATGATGATGATACTCAGGA         3'
|||||||||||| | ||o|
3' ACTACTACTACTACTACTATTCTTGAACCAGT 5'
217Arabidopsis thalianaTCCTCCACCACCGAGAGCATTalignmentplotGSM278335-4060AT2G32690.1 cdna:known chromosome:TAIR10:2:13863717:13864596:-1 gene:AT2G32690 transcript:AT2G32690.126150.03256.253.5
5'     TCCTCCACCACCGAGAGCATT        3'
|||||||||||| |o || ||
3' CTGGAGGAGGTGGTGG-TTACGGAAATGGTTT 5'
218Arabidopsis thalianaTGCTGGTGGTGCTCCTCCATalignmentplotGSM278335-4060AT3G07050.1 cdna:known chromosome:TAIR10:3:2229590:2232361:-1 gene:AT3G07050 transcript:AT3G07050.121650.04443.5
5'     TGCTGGTGGTGCTCCTCCAT         3'
| || ||||||||||| ||o
3' GAAGAAGAACACCACGAGGAAGTGGAAAAAGT 5'
219Arabidopsis thalianaTGAGAAGAAGAAGAAGAAAAalignmentplotGSM278335-4060AT5G07842.1 cdna:known chromosome:TAIR10:5:2506634:2508435:-1 gene:AT5G07842 transcript:AT5G07842.11800.0473.53
5'    TGA-GAAGAAGAAGAAGAAAA         3'
|| ||||||||||||||| |
3' AGGTCTACTTCTTCTTCTTCTTCTTCTTCTTT 5'
220Arabidopsis thalianaTGATTGAGCCGTGTCAATATCalignmentplotGSM278335-4060AT2G45160.1 cdna:known chromosome:TAIR10:2:18617862:18620150:-1 gene:AT2G45160 transcript:AT2G45160.101014068681
5'     TGATTGAGCCGTGTCAATATC        3'
|||||||||||o|o|||||||
3' TACCACTAACTCGGCGCGGTTATAGGGAACGC 5'
221Arabidopsis thalianaCATCGTCTTCTTCCTCGATCalignmentplotGSM278335-4060AT5G54830.1 cdna:known chromosome:TAIR10:5:22273070:22276301:1 gene:AT5G54830 transcript:AT5G54830.1128450.01554
5'     CATCGTCTTCTTCCTCGATC         3'
|||o||||||||| |o ||
3' TACCTTAGTAGAAGAAGGTGTAAGGGGTTTTG 5'
222Arabidopsis thalianaTTGAGCCGTGCCAATATCACGalignmentplotGSM278335-4060AT2G45160.1 cdna:known chromosome:TAIR10:2:18617862:18620150:-1 gene:AT2G45160 transcript:AT2G45160.1210110882.5
5'     TTGAGCCGTGCCAATATCACG        3'
||||||||o||||||||| |
3' CACTAACTCGGCGCGGTTATAGGGAACGCGCT 5'
223Arabidopsis thalianaTTGAAAATGTTGTTGCTGCTGCTGalignmentplotGSM278335-4060AT5G25220.2 cdna:known chromosome:TAIR10:5:8736074:8738584:1 gene:AT5G25220 transcript:AT5G25220.22245031.53
5'     TTGAAAATGTTGTTGCTGCTGCTG     3'
||| |||||||||||||| ||| |
3' GAAGAACCTTTACAACAACGACAACGCCTCCT 5'
224Arabidopsis thalianaGAGGTCGAGTGTCTTCTACTalignmentplotGSM278335-4060AT5G17540.1 cdna:known chromosome:TAIR10:5:5781987:5783706:-1 gene:AT5G17540 transcript:AT5G17540.1214590.04223
5'     GAGGTCGAGTGTCTTCTACT         3'
||| |||||| |||| ||||
3' GTCTCTCAAGCTCAAAGAA-ATGATTCTGTTA 5'
225Arabidopsis thalianaGGAATCTTGATGATGCTGCATalignmentplotGSM278335-4060AT5G60120.2 cdna:known chromosome:TAIR10:5:24207689:24211743:1 gene:AT5G60120 transcript:AT5G60120.20182102311.51
5'     GGAATCTTGATGATGCTGCAT        3'
o|||||o||||||||||||||
3' TCACTCTTAGGACTACTACGACGTAAACTTTT 5'
226Arabidopsis thalianaTCTATCTTCTTCGTCTTCGATalignmentplotGSM278335-4060AT1G77122.1 cdna:known chromosome:TAIR10:1:28977357:28978743:-1 gene:AT1G77122 transcript:AT1G77122.123210.0240.005698012.5
5'     TCTATCTTCTTCGTCTTCGAT        3'
||| |||||||| |||||o||
3' AAGAAGA-AGAAGAAGAAGAAGTTACTAGTTG 5'
227Arabidopsis thalianaTAACTATTTTGAGAAGAAGTGalignmentplotGSM278335-4060AT3G20720.1 cdna:known chromosome:TAIR10:3:7239908:7247005:1 gene:AT3G20720 transcript:AT3G20720.1214620.01212.5
5'    TAACTAT-TTTGAGAAGAAGTG        3'
||||| | ||||||||o|||||
3' CCTATTGACAGAAACTCTTTTTCACACCCCCA 5'
228Arabidopsis thalianaTTGGACTGAAGGGAGCTCCalignmentplotGSM278335-4060AT1G30210.1 cdna:known chromosome:TAIR10:1:10627185:10630538:-1 gene:AT1G30210 transcript:AT1G30210.1211420.02422.5
5'     TTGGACTGAAGGGAGCTCC          3'
||||||||||||| |o||
3' ACTTAACCTGACTTCCCAGGGGGATGATGACA 5'
229Arabidopsis thalianaTTGGACTGAAGGGAGCTCCCTalignmentplotGSM278335-4060AT1G30210.1 cdna:known chromosome:TAIR10:1:10627185:10630538:-1 gene:AT1G30210 transcript:AT1G30210.1211420423
5'     TTGGACTGAAGGGAGCTCCCT        3'
||||||||||||| | ||||
3' ACTTAACCTGACTTCCCAGG-GGGATGATGAC 5'
230Arabidopsis thalianaTGCCAAAGGAGATTTGCCTCGalignmentplotGSM278335-4060AT2G33770.1 cdna:known chromosome:TAIR10:2:14277558:14283040:-1 gene:AT2G33770 transcript:AT2G33770.127510.01223
5'     TGCCAAAGGAGATTTGCCTCG        3'
||||||||||||| ||||o o
3' GTTAACGGTTTCCTCTATACGGGATCTTACTC 5'
231Arabidopsis thalianaCTCGGGATGGTTCCTCGATGalignmentplotGSM278335-4060AT1G24490.2 cdna:known chromosome:TAIR10:1:8682234:8685271:1 gene:AT1G24490 transcript:AT1G24490.223100.03213
5'     CTCGGGATGGTTCCTCGATG         3'
||||| ||||| ||| ||||
3' CTAAGAGCCGTACCA-GGAACTACTTTAGTTT 5'
232Arabidopsis thalianaTAACGCACAACACTAAGCCATalignmentplotGSM278335-4060AT3G19890.1 cdna:known chromosome:TAIR10:3:6914910:6916142:-1 gene:AT3G19890 transcript:AT3G19890.113220221.5
5'     TAACGCACAACACTAAGCCAT        3'
|||||||||||||||o||||
3' GAACCTTGCGTGTTGTGATTTGGTAGCGTAAC 5'
233Arabidopsis thalianaTCCGGAGGGATTCCTTCCTTalignmentplotGSM278335-4060AT3G52590.1 cdna:known chromosome:TAIR10:3:19505629:19506932:1 gene:AT3G52590 transcript:AT3G52590.121460441
5'     TCCGGAGGGATTCCTTCCTT         3'
||||||||||||||||| ||
3' GACTAGGCCTCCCTAAGGAAGAAACAGAACCT 5'
234Arabidopsis thalianaTGGAGCCATGGTGGGAGCTGalignmentplotGSM278335-4060AT5G08000.1 cdna:known chromosome:TAIR10:5:2563554:2565491:1 gene:AT5G08000 transcript:AT5G08000.1013001531534
5'     TGGAGCCATGGTGGGAGCTG         3'
||||||||||| |||| |
3' GGTCTCCTCGGTACCAACCTCAAGTCTCTATG 5'
235Arabidopsis thalianaTGCTCGATTGTCTGGTTGAGalignmentplotGSM278335-4060AT4G15410.1 cdna:known chromosome:TAIR10:4:8814801:8816805:1 gene:AT4G15410 transcript:AT4G15410.1112840.0421214
5'     TGCTCGATTGTCTGGTTGAG         3'
|||||||| || ||||o |o
3' TCGAACGAGCTACCAAACCAGGTTAAGACAGT 5'
236Arabidopsis thalianaTCATCATCATCATCATCTTCTalignmentplotGSM278335-4060AT5G08600.1 cdna:known chromosome:TAIR10:5:2786267:2789871:1 gene:AT5G08600 transcript:AT5G08600.123300190.05762990
5'     TCATCATCATCATCATCTTCT        3'
|||||||||||||||||||||
3' TAGTAGTAGTAGTAGTAGTAGAAGACTGAGGT 5'
237Arabidopsis thalianaTCATCTTCATCATCATCATCTalignmentplotGSM278335-4060AT2G21420.1 cdna:known chromosome:TAIR10:2:9169713:9171746:1 gene:AT2G21420 transcript:AT2G21420.1011840.02602.857142
5'     TCATCTTCATCATCATCATCT        3'
||||| ||||||||||||||
3' TAGTAGTAGTAGTAGTAGTAGTAGTAGCGTTG 5'
238Arabidopsis thalianaCTATCATCATCATCCTCGTAAalignmentplotGSM278335-4060AT2G21420.1 cdna:known chromosome:TAIR10:2:9169713:9171746:1 gene:AT2G21420 transcript:AT2G21420.1011840.03602.857143.5
5'     CTATCATCATCATCCTCGTAA        3'
| |||||||||||| ||o| |
3' AGTAG-TAGTAGTAGTAGTAGTAGTAGCGTTG 5'
239Arabidopsis thalianaTGCTCGATTGTCTGGTTGAGalignmentplotGSM278335-4060AT3G28830.1 cdna:known chromosome:TAIR10:3:10831168:10833284:1 gene:AT3G28830 transcript:AT3G28830.1215400.0411113
5'     TGCTCGATTGTCTGGTTGAG         3'
|| | ||||||||| |||||
3' GTGAACCA-CTAACAGACGAACTCGAGACTGA 5'
240Arabidopsis thalianaCTATCATCATCATCCTCGTAAalignmentplotGSM278335-4060AT5G63740.1 cdna:known chromosome:TAIR10:5:25510776:25511456:-1 gene:AT5G63740 transcript:AT5G63740.122720.02190.05762993
5'     CTATCATCATCATCCTCGTAA        3'
| |||||||||||||||||
3' AGTAG-TAGTAGTAGTAGGAGCAGGAGCAGGA 5'
241Arabidopsis thalianaGTGAGTTTAGGGTTCTTGAAalignmentplotGSM278335-4060AT5G48810.1 cdna:known chromosome:TAIR10:5:19789067:19790334:-1 gene:AT5G48810 transcript:AT5G48810.10770.0117174
5'     GTGAGTTTAGGGTTCTTGAA         3'
|||||||| ||o| |||o |
3' TAGACACTCAAACCCTA-GAATGTGGTTGGCG 5'
242Arabidopsis thalianaTCATCATCATCATCATCTTCCalignmentplotGSM278335-4060AT5G63740.1 cdna:known chromosome:TAIR10:5:25510776:25511456:-1 gene:AT5G63740 transcript:AT5G63740.122780.03190.05762991
5'     TCATCATCATCATCATCTTCC        3'
||||||||||||||||| |||
3' TAGTAGTAGTAGTAGTAGTAGTAGGAGCAGGA 5'
243Arabidopsis thalianaGTGAGTTTAGGGTTCTTGAAalignmentplotGSM278335-4060AT3G52230.1 cdna:known chromosome:TAIR10:3:19371213:19372687:1 gene:AT3G52230 transcript:AT3G52230.12810442
5'     GTGAGTTTAGGGTTCTTGAA         3'
||||||||||||| |||||
3' CTAAAACTCAAATCCCAA-AACTTAACTTAGC 5'
244Arabidopsis thalianaCTATCATCATCATCCTCGTAAalignmentplotGSM278335-4060AT2G21420.1 cdna:known chromosome:TAIR10:2:9169713:9171746:1 gene:AT2G21420 transcript:AT2G21420.1211780190.05762992.5
5'     CTATCATCATCATCCTCGTAA        3'
| |||||||||||| |||o||
3' AGTAG-TAGTAGTAGTAGTAGCGTTGGTCCTC 5'
245Arabidopsis thalianaAACGGCGTGAGTGCCGTAGAalignmentplotGSM278335-4060AT1G80950.1 cdna:known chromosome:TAIR10:1:30412544:30415113:-1 gene:AT1G80950 transcript:AT1G80950.114620664
5'     AACGGCGTGAGTGCCGTAGA         3'
|||o||||o|o|o|| || |
3' TCTTTTGTCGCATTTATGGGATGTTTAGTTCA 5'
246Arabidopsis thalianaTCTATCTTCTTCGTCTTCGATalignmentplotGSM278335-4060AT2G44310.1 cdna:known chromosome:TAIR10:2:18309212:18309826:1 gene:AT2G44310 transcript:AT2G44310.123690.05663
5'     TCTATCTTCTTCGTCTTCGAT        3'
| |||||||||o|||o||||
3' TTCGTGCTAGAAGAAGTAGAGGCTAGATTTGA 5'
247Arabidopsis thalianaCTCTGCCAAAGGAGATTTGCalignmentplotGSM278335-4060AT4G09730.1 cdna:known chromosome:TAIR10:4:6136249:6139711:1 gene:AT4G09730 transcript:AT4G09730.1219320.05333
5'     CTCTGCCAAAGGAGATTTGC         3'
|| |||| |||o|||o||||
3' CCGAGA-ACGGCTTCTTCTGAACGGGGCCTTT 5'
248Arabidopsis thalianaTTCCACAGCTTTCTTGAACTTalignmentplotGSM278335-4060AT2G45480.1 cdna:known chromosome:TAIR10:2:18745340:18747533:1 gene:AT2G45480 transcript:AT2G45480.105250992
5'    TTCCAC-AGCTTTCTTGAACTT        3'
|||||| ||||||||||||| |
3' TCTAAGGTGTTCGAAAGAACTTGCAAATGCTG 5'
249Arabidopsis thalianaTAGTCCGGTTTTGGATACGTGalignmentplotGSM278335-4060AT1G42970.1 cdna:known chromosome:TAIR10:1:16127381:16129843:1 gene:AT1G42970 transcript:AT1G42970.1215850.0529294
5'     TAGTCCGGTTTTGGATACGTG        3'
|||| ||o|||o|o||| ||o
3' ACGTATCATGCTAAAGCTTATTCATTGAGTAC 5'
250Arabidopsis thalianaTTGAAGAGGACTTGGAACTTCGATalignmentplotGSM278335-4060AT2G47940.1 cdna:known chromosome:TAIR10:2:19617986:19622232:-1 gene:AT2G47940 transcript:AT2G47940.122900.0252.54
5'     TTGAAGAGGACTTGGAACTTCGAT     3'
|||| ||||| ||||||||| ||
3' AAAAAACTCCTCCT-AACCTTGAAAGTAGAGC 5'
251Arabidopsis thalianaGATGATGATGATACTCAGGAalignmentplotGSM278335-4060AT3G25013.1 cdna:known chromosome:TAIR10:3:9113875:9116188:1 gene:AT3G25013 transcript:AT3G25013.112890.01222.5
5'     GATGATGATGATACTCAGGA         3'
|| |||||||||||o ||||
3' TCTCCTTCTACTACTATGGTTCCTGATACTCG 5'
252Arabidopsis thalianaAGGTCTTGGGTTCGAGGAACalignmentplotGSM278335-4060AT3G59150.1 cdna:known chromosome:TAIR10:3:21872706:21874735:1 gene:AT3G59150 transcript:AT3G59150.1017820.01664
5'     AGGTCTTGGGTTCGAGGAAC         3'
|||| |||o||o|||| ||
3' TGGCTCCA-AACTCAGGCTCGGTGTATACGGT 5'
253Arabidopsis thalianaTTGACAGAAGATAGAGAGCACalignmentplotGSM278335-4060AT2G42200.1 cdna:known chromosome:TAIR10:2:17587407:17589630:1 gene:AT2G42200 transcript:AT2G42200.129480331
5'     TTGACAGAAGATAGAGAGCAC        3'
||||||||||| |||||||||
3' CCTAAACTGTCTTCTCTCTCTCGTGTCAAACT 5'
254Arabidopsis thalianaTGATGCTAGCCGTGAAGGAGAAAAalignmentplotGSM278335-4060AT3G26190.1 cdna:known chromosome:TAIR10:3:9583465:9585109:-1 gene:AT3G26190 transcript:AT3G26190.115520424
5'     TGATGCTAGCCGTGAAGGAGAAAA     3'
o|||o||||| ||o |o|||||||
3' GTATGCTATGATCGCCATATTCTCTTTTCTCG 5'
255Arabidopsis thalianaACTCAGCCAGGGGGTCGAGTGalignmentplotGSM278335-4060AT1G70730.1 cdna:known chromosome:TAIR10:1:26668865:26672779:-1 gene:AT1G70730 transcript:AT1G70730.1217370.0351.666674
5'     ACTCAGCCAGGGGGTCGAGTG        3'
| |||o|||||||oo|o|| |
3' GTTGT-AGTTGGTCCCCTGGTTCTCGTAGGAC 5'
256Arabidopsis thalianaTATTCGACCCCCAGGTCGAGalignmentplotGSM278335-4060AT2G44060.2 cdna:known chromosome:TAIR10:2:18226319:18228151:1 gene:AT2G44060 transcript:AT2G44060.227530.0526133.5
5'     TATTCGACCCCCAGGTCGAG         3'
o||| || |||||o|||||o
3' TTCAGTAA-CTCGGGGTTCAGCTTTAGTAAGT 5'
257Arabidopsis thalianaCTGGTTTAGTCACTTTCACTGalignmentplotGSM278335-4060AT1G47128.1 cdna:known chromosome:TAIR10:1:17282825:17285670:-1 gene:AT1G47128 transcript:AT1G47128.125770.03443
5'     CTGGTTTAGTCACTTTCACTG        3'
|||||||| || |o|o|||||
3' GCTAGACCAAATAAG-GGAGGTGACGAGGTTA 5'
258Arabidopsis thalianaCTATCATCATCATCCTCGTAAalignmentplotGSM278335-4060AT1G49900.1 cdna:known chromosome:TAIR10:1:18473908:18477643:-1 gene:AT1G49900 transcript:AT1G49900.1219640.02190.05762992.5
5'     CTATCATCATCATCCTCGTAA        3'
| |||||||||||||||o| |
3' AGTAG-TAGTAGTAGTAGGAGTAGTGGTAGTA 5'
259Arabidopsis thalianaCTATCATCATCATCCTCGTAAalignmentplotGSM278335-4060AT1G49900.1 cdna:known chromosome:TAIR10:1:18473908:18477643:-1 gene:AT1G49900 transcript:AT1G49900.1219310.01190.05762992.5
5'     CTATCATCATCATCCTCGTAA        3'
| |||||||||||| ||o|||
3' AGTAG-TAGTAGTAGTAGTAGTATTATTCTTG 5'
260Arabidopsis thalianaAAGCTCAGGAGGGATAGCGCCalignmentplotGSM278335-4060AT5G57735.1 cdna:known chromosome:TAIR10:5:23394005:23394500:1 gene:AT5G57735 transcript:AT5G57735.11429020203
5'     AAGCTCAGGAGGGATAGCGCC        3'
||||||||||||o|||| o |
3' GTATTTCGAGTCCTCCTTATCTTTGTTGTTTG 5'
261Arabidopsis thalianaCATCCAAGGTGTTTGTAGAAAalignmentplotGSM278335-4060AT1G09750.1 cdna:known chromosome:TAIR10:1:3157501:3159148:1 gene:AT1G09750 transcript:AT1G09750.1014940.0141414
5'     CATCCAAGGTGTTTGTAGAAA        3'
||| |||o||o| |||||||
3' GCAAGTATGTTTCATATACATCTTCCAGTTCG 5'
262Arabidopsis thalianaTGACAGAAGAAAGAGAGCACalignmentplotGSM278335-4060AT2G42200.1 cdna:known chromosome:TAIR10:2:17587407:17589630:1 gene:AT2G42200 transcript:AT2G42200.129470441
5'     TGACAGAAGAAAGAGAGCAC         3'
|||||||||| |||||||||
3' CTAAACTGTCTTCTCTCTCTCGTGTCAAACTC 5'
263Arabidopsis thalianaATCCCTCGCAAATTTTGCGAalignmentplotGSM278335-4060AT5G38480.1 cdna:known chromosome:TAIR10:5:15409697:15411516:1 gene:AT5G38480 transcript:AT5G38480.124370.0452.53.5
5'    ATCCC-TCGCAAATTTTGCGA         3'
||||| ||o|| ||||||| |
3' TTTTAGGGTAGTGTCTAAAACGATTCGAGCCT 5'
264Arabidopsis thalianaATGTGCCCATCTTCACCATCalignmentplotGSM278335-4060AT1G63130.1 cdna:known chromosome:TAIR10:1:23412730:23415149:1 gene:AT1G63130 transcript:AT1G63130.126620223
5'     ATGTGCCCATCTTCACCATC         3'
||o| ||||| |o|||||||
3' CGACTATA-GGGTAAAGGTGGTAGACTGGTTG 5'
265Arabidopsis thalianaTGCTCGATTGTCTGGTTGAGalignmentplotGSM278335-4060AT5G23820.1 cdna:known chromosome:TAIR10:5:8031268:8033020:1 gene:AT5G23820 transcript:AT5G23820.107580.0223234
5'     TGCTCGATTGTCTGGTTGAG         3'
|||||||||| || ||| |
3' CTGTACGAGCTAAC-GAACAAGTATAGCGATA 5'
266Arabidopsis thalianaTTCCACAGCTTTCTTGAACTTalignmentplotGSM278335-4060AT5G66420.1 cdna:known chromosome:TAIR10:5:26521674:26525029:-1 gene:AT5G66420 transcript:AT5G66420.1217370.0452.53
5'    TTCCA-CAGCTTTCTTGAACTT        3'
|o||| ||||||o||oo|||||
3' GTTAGGGTGGTCGAAGGAGTTTGAAACGTCTA 5'
267Arabidopsis thalianaTGGAGCCATGGTGGGAGCTGalignmentplotGSM278335-4060AT5G14380.1 cdna:known chromosome:TAIR10:5:4635797:4636676:-1 gene:AT5G14380 transcript:AT5G14380.122950992
5'     TGGAGCCATGGTGGGAGCTG         3'
||||||| |||| |||||||
3' GCCGACCTCGGAACCAACCTCGACTTCCTCGG 5'
268Arabidopsis thalianaTGATTGAGCCGTGTCAATATCalignmentplotGSM278335-4060AT4G00150.1 cdna:known chromosome:TAIR10:4:57199:59286:-1 gene:AT4G00150 transcript:AT4G00150.108670.0190901
5'     TGATTGAGCCGTGTCAATATC        3'
|||||||||||o|o|||||||
3' GACAACTAACTCGGCGCGGTTATAGGGGACTC 5'
269Arabidopsis thalianaTAGAAGGGAGTGAGTTCTCGalignmentplotGSM278335-4060AT5G38660.1 cdna:known chromosome:TAIR10:5:15473109:15475552:-1 gene:AT5G38660 transcript:AT5G38660.128010.03136.53
5'     TAGAAGGGAGTGAGTTCTCG         3'
||||||o|||||o|| |||
3' AGGTTTCTTCCTTCACTTAA-AGCGGACAGAA 5'
270Arabidopsis thalianaTCTTCTTCGATCGGTTCTGAalignmentplotGSM278335-4060AT2G19450.1 cdna:known chromosome:TAIR10:2:8426206:8429736:1 gene:AT2G19450 transcript:AT2G19450.1019000.0125253
5'     TCTTCTTCGATCGGTTCTGA         3'
||||||||o|| |||| |o|
3' GAAAAGAAGAAGTTA-CCAATATTGTGATAAA 5'
271Arabidopsis thalianaTGCTCGTCTTCGCCGGTTAGGalignmentplotGSM278335-4060AT1G15370.1 cdna:known chromosome:TAIR10:1:5287047:5288577:1 gene:AT1G15370 transcript:AT1G15370.123120.02334
5'     TGCTCGTCTTCGCCGGTTAGG        3'
|o|||||||| |||ooo |||
3' TAGTATGAGCAGAAACGGTTGTTCCTTCTACG 5'
272Arabidopsis thalianaTAGGATCAAGATGGGGATGAalignmentplotGSM278335-4060AT3G21350.2 cdna:known chromosome:TAIR10:3:7517070:7518744:1 gene:AT3G21350 transcript:AT3G21350.221810.0431.53
5'     TAGGATCAAGATGGGGATGA         3'
|| |||||||| ||| ||||
3' ATCAATGCTAGTTCT-CCCATACTTAACTAGG 5'
273Arabidopsis thalianaTGAGAAGAAGAAGAAGAAAAalignmentplotGSM278335-4060AT3G15140.1 cdna:known chromosome:TAIR10:3:5099532:5101781:-1 gene:AT3G15140 transcript:AT3G15140.122340.05300.04720161.5
5'     TGAGAAGAAGAAGAAGAAAA         3'
o||||||||||||||||||
3' TCTTCTTCTTCTTCTTCTTCTTTTCAGTCTCC 5'
274Arabidopsis thalianaAGAGATACGACGGAGATGGAalignmentplotGSM278335-4060AT1G54140.1 cdna:known chromosome:TAIR10:1:20213967:20215223:-1 gene:AT1G54140 transcript:AT1G54140.10420773.5
5'     AGAGATACGACGGAGATGGA         3'
|||o|o|||||||||| |o
3' ACCGTCTTTGTGCTGCCTCT-CTAACTACTTG 5'
275Arabidopsis thalianaTTCCACAGCTTTCTTGAACTGalignmentplotGSM278335-4060AT5G50460.1 cdna:known chromosome:TAIR10:5:20551437:20552566:-1 gene:AT5G50460 transcript:AT5G50460.104670.0229294
5'     TTCCACAGCTTTCTTGAACTG        3'
||||||||||| ||o|| |o
3' GCTTTAGGTGTCGAAA-AATTTAATCAAACGA 5'
276Arabidopsis thalianaTGACAGAAGAGAGTTAGCACalignmentplotGSM278335-4060AT2G33810.1 cdna:known chromosome:TAIR10:2:14305001:14306072:1 gene:AT2G33810 transcript:AT2G33810.127970.0112122
5'     TGACAGAAGAGAGTTAGCAC         3'
|||||||||||||| ||||
3' TCTGACTGTCTTCTCTCATTCGTTTCGGACAA 5'
277Arabidopsis thalianaTCGAACCCGAACCTGAACCGAalignmentplotGSM278335-4060AT3G27200.1 cdna:known chromosome:TAIR10:3:10043522:10044373:-1 gene:AT3G27200 transcript:AT3G27200.124600.01333.5
5'     TCGAACCCGAACCTGAA-CCGA       3'
o |||||||| |||||| ||||
3' CTAGGTCTTGGGCTGGGACTTAGGCTTGGGCT 5'
278Arabidopsis thalianaCGGACCCGAAACCTGACCCGalignmentplotGSM278335-4060AT3G27200.1 cdna:known chromosome:TAIR10:3:10043522:10044373:-1 gene:AT3G27200 transcript:AT3G27200.124410.01333.5
5'     CGGACCCGAAACCTGACCCG         3'
||o||||||| ||||| ||
3' TTAGGCTTGGGCTT-GGACTTGGACTTCCTCT 5'
279Arabidopsis thalianaTGACAGAAGATAGAGAGCACalignmentplotGSM278335-4060AT3G49780.1 cdna:known chromosome:TAIR10:3:18465679:18466376:1 gene:AT3G49780 transcript:AT3G49780.113770.04884
5'     TGACAGAAGATAGAGAGCAC         3'
o||||||o|o|||o|| ||
3' TCTGCTTGTCTTTTGTCTTTCATGATGTCACT 5'
280Arabidopsis thalianaTGCCTGGCTCCCTGTATGCCalignmentplotGSM278335-4060AT1G77850.1 cdna:known chromosome:TAIR10:1:29272313:29275419:1 gene:AT1G77850 transcript:AT1G77850.10142004454450.5
5'     TGCCTGGCTCCCTGTATGCC         3'
||||||||||||||o|||||
3' TATAACGGACCGAGGGACGTACGGTCGTCCTT 5'
281Arabidopsis thalianaTCAATGCATTGAAAGTGACTAalignmentplotGSM278335-4060AT5G41170.1 cdna:known chromosome:TAIR10:5:16478486:16480584:-1 gene:AT5G41170 transcript:AT5G41170.118920411
5'     TCAATGCATTGAAAGTGACTA        3'
|||||||||||||||||| ||
3' AGCTAGTTACGTAACTTTCACTAATGTAGTCC 5'
282Arabidopsis thalianaGCTACCGCAGCCGCTGCCGCAalignmentplotGSM278335-4060AT2G27900.2 cdna:known chromosome:TAIR10:2:11877430:11886013:1 gene:AT2G27900 transcript:AT2G27900.22508052.52
5'     GCTACCGCAGCCGCTGCCGCA        3'
|| |||||||| |||||||||
3' TGCTCGTTGGCGTCGTCGACGGCGTCGTGCAC 5'
283Arabidopsis thalianaTGACAGAAGAAAGAGAGCACalignmentplotGSM278335-4060AT3G57920.1 cdna:known chromosome:TAIR10:3:21444321:21446035:-1 gene:AT3G57920 transcript:AT3G57920.128550331
5'     TGACAGAAGAAAGAGAGCAC         3'
|||||||||| |||||||||
3' TCAAACTGTCTTCTCTCTCTCGTGTCGAACTT 5'
284Arabidopsis thalianaGGAATCTTGATGATGCTGCATalignmentplotGSM278335-4060AT3G54990.1 cdna:known chromosome:TAIR10:3:20373718:20376522:-1 gene:AT3G54990 transcript:AT3G54990.109760551.5
5'     GGAATCTTGATGATGCTGCAT        3'
||||||o|||||||||||||
3' TTTCCCTTAGGACTACTACGACGTTGACAGAA 5'
285Arabidopsis thalianaTCGATAAACCTCTGCATCCAGalignmentplotGSM278335-4060AT1G01040.1 cdna:known chromosome:TAIR10:1:23146:31227:1 gene:AT1G01040 transcript:AT1G01040.1234330331
5'    TCGATAA-ACCTCTGCATCCAG        3'
||||||| ||||||||||||||
3' TGTAGCTATTATGGAGACGTAGGTCGAGTAAC 5'
286Arabidopsis thalianaATGATGCGCAAATGCGGATAalignmentplotGSM278335-4060AT5G04853.1 cdna:known chromosome:TAIR10:5:1410527:1410703:-1 gene:AT5G04853 transcript:AT5G04853.101020.01994
5'     ATGATGCGCAAATGCGGATA         3'
|o||| |o|||||||oo||
3' GTGGTGCTA-GTGTTTACGTTTACGGCGGTAC 5'
287Arabidopsis thalianaAGATGGACGAGTGCAAGAATTalignmentplotGSM278335-4060AT5G17630.1 cdna:known chromosome:TAIR10:5:5809334:5810962:1 gene:AT5G17630 transcript:AT5G17630.1015580.0417174
5'     AGATGGACGAGTGCAAGAATT        3'
|| |o|||||| ||||||o|
3' TAGTTC-ATCTGCTCCAGTTCTTGATTCATCT 5'
288Arabidopsis thalianaCTGGGTTGTGATGTTCTGCAalignmentplotGSM278335-4060AT1G55020.1 cdna:known chromosome:TAIR10:1:20525708:20530273:1 gene:AT1G55020 transcript:AT1G55020.1223670.04223
5'     CTGGGTTGTGATGTTCTGCA         3'
|||o|o||||||| ||| ||
3' CTTCGACTCGACACTACCAGAAGTTTTTGTGA 5'
289Arabidopsis thalianaTACCATCTCTTGAGGAACTTGGalignmentplotGSM278335-4060AT1G07920.1 cdna:known chromosome:TAIR10:1:2454846:2457321:1 gene:AT1G07920 transcript:AT1G07920.1212610.01183.63
5'     TACCATCTCTTGAGGAACTTGG       3'
o||||| |||| |o||||||||
3' CGTAGTGGTA-AGAAGTTCTTGAACCCGAGGA 5'
290Arabidopsis thalianaTGACAGAAGAAAGAGAGCACalignmentplotGSM278335-4060AT5G38610.1 cdna:known chromosome:TAIR10:5:15460691:15461459:-1 gene:AT5G38610 transcript:AT5G38610.125890.01442
5'     TGACAGAAGAAAGAGAGCAC         3'
||||||||||| |||||||
3' CTACACTGTCTTCTT-CTCTCGTATAACTTAT 5'
291Arabidopsis thalianaTGACAGAAGATAGAGAGCACalignmentplotGSM278335-4060AT5G38610.1 cdna:known chromosome:TAIR10:5:15460691:15461459:-1 gene:AT5G38610 transcript:AT5G38610.125890442
5'     TGACAGAAGATAGAGAGCAC         3'
|||||||||| ||||||||
3' CTACACTGTCTTCT-TCTCTCGTATAACTTAT 5'
292Arabidopsis thalianaTGAGAAGAAGAAGAAGAAAAalignmentplotGSM278335-4060AT3G25150.2 cdna:known chromosome:TAIR10:3:9157078:9160100:-1 gene:AT3G25150 transcript:AT3G25150.221010.02631.5
5'     TGAGAAGAAGAAGAAGAAAA         3'
|| ||||||||||||o||||
3' TTTTAC-CTTCTTCTTCTTTTTTTTCACCGAA 5'
293Arabidopsis thalianaTTGGACTGAAGGGAGCTCCTTalignmentplotGSM278335-4060AT1G53230.1 cdna:known chromosome:TAIR10:1:19849788:19851725:-1 gene:AT1G53230 transcript:AT1G53230.1211950.02883.5
5'     TTGGACTGAAGGGAGCTCCTT        3'
|||||||||||| o|o|||o
3' CAATTACCTGACTTCCCCTGGGGAGACACTAT 5'
294Arabidopsis thalianaACTCGACCTCGAGGTCGAGTGalignmentplotGSM278335-4060AT5G06330.1 cdna:known chromosome:TAIR10:5:1934739:1935644:-1 gene:AT5G06330 transcript:AT5G06330.115320.01224
5'    ACTCGACC-TCGAGGTCGAGTG        3'
|||||||| |||||o| o||oo
3' GCTTGAGCTGGCAGCTCTACTTCGTAGTTGTA 5'
295Arabidopsis thalianaAGAGAAACCCAACAGCATCATalignmentplotGSM278335-4060AT1G69160.1 cdna:known chromosome:TAIR10:1:26000214:26001588:1 gene:AT1G69160 transcript:AT1G69160.1011810.0412124
5'     AGAGAAACCCAACAGCATCAT        3'
o|||||||||| |o||| ||
3' TTAGGTTCTTTGGGTTTTTGTA-TATTGAATA 5'
296Arabidopsis thalianaTCGGACCAGGCTTCATTCCCCalignmentplotGSM278335-4060AT1G30490.1 cdna:known chromosome:TAIR10:1:10796135:10800961:-1 gene:AT1G30490 transcript:AT1G30490.1280605431.52.5
5'     TCGGACCAGGCTTCATTCCCC        3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5'
297Arabidopsis thalianaTCGGACCAGGCTTCATCCCCCalignmentplotGSM278335-4060AT1G30490.1 cdna:known chromosome:TAIR10:1:10796135:10800961:-1 gene:AT1G30490 transcript:AT1G30490.1280605431.52.5
5'     TCGGACCAGGCTTCATCCCCC        3'
o||||||||||||||||||
3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAGAC 5'
298Arabidopsis thalianaGAGGAGGAGGAGCACCACCGTalignmentplotGSM278335-4060AT3G56340.1 cdna:known chromosome:TAIR10:3:20892129:20893443:-1 gene:AT3G56340 transcript:AT3G56340.124730.01663
5'     GAGGAGGAGGAGCACCACCGT        3'
||| || |||||||||||||
3' GCTCCTCGTCGTCCTCGTGGTGGCCGTCCCGC 5'
299Arabidopsis thalianaTCGACCTGGTTGTCGAGTGGTalignmentplotGSM278335-4060AT5G39030.1 cdna:known chromosome:TAIR10:5:15620066:15622486:1 gene:AT5G39030 transcript:AT5G39030.121190.04333.5
5'    TCGACC-TGGTTGTCGAGTGGT        3'
|||||| ||||||||||o ||
3' TCAAGCTGGCACCAACAGCTTCCCCTGTAGCC 5'
300Arabidopsis thalianaGAGGTTTGCGATGAGAAAGAGalignmentplotGSM278335-4060AT5G48790.1 cdna:known chromosome:TAIR10:5:19779860:19782050:-1 gene:AT5G48790 transcript:AT5G48790.106610.0523234
5'     GAGGTTTGCGATGAGAAAGAG        3'
| ||| |||||oo||||| ||
3' TATGC-CCATACGCTGTTCTTTGTCAAGCAGA 5'
301Arabidopsis thalianaTCCTCCACCACCGAGAGCATalignmentplotGSM278335-4060AT2G32690.2 cdna:known chromosome:TAIR10:2:13863717:13864596:-1 gene:AT2G32690 transcript:AT2G32690.225850.05256.253.5
5'     TCCTCCACCACCGAGAGCAT         3'
|||||||||||| |o || |
3' CTGGAGGAGGTGGTGG-TTACGGAAATGGTTT 5'
302Arabidopsis thalianaATCGAAGGAGATGGAGGACGalignmentplotGSM278335-4060AT1G70780.1 cdna:known chromosome:TAIR10:1:26695166:26696392:-1 gene:AT1G70780 transcript:AT1G70780.125950.05423
5'     ATCGAAGGAGATGGAGGACG         3'
||| |||o||| |||o||||
3' AGTCTAGGTTCTTCT-CCTTCTGCTGGAAGTG 5'
303Arabidopsis thalianaTCGGACCAGGCTTCATTCCCCalignmentplotGSM278335-4060AT2G34710.1 cdna:known chromosome:TAIR10:2:14639323:14644273:-1 gene:AT2G34710 transcript:AT2G34710.1288105532.52.5
5'     TCGGACCAGGCTTCATTCCCC        3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5'
304Arabidopsis thalianaTCGGACCAGGCTTCATCCCCCalignmentplotGSM278335-4060AT2G34710.1 cdna:known chromosome:TAIR10:2:14639323:14644273:-1 gene:AT2G34710 transcript:AT2G34710.1288105532.52.5
5'     TCGGACCAGGCTTCATCCCCC        3'
o||||||||||||||||||
3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAGAC 5'
305Arabidopsis thalianaGAGAAGATGAAGCTGTTCTGalignmentplotGSM278335-4060AT3G56950.2 cdna:known chromosome:TAIR10:3:21078297:21079856:-1 gene:AT3G56950 transcript:AT3G56950.204660.01199.53.5
5'     GAGAAGATGAAGCTGTTCTG         3'
|||||||||||o|||o| o
3' CTGCCTCTTCTACTTTGACGACTTCGGTGGCC 5'
306Arabidopsis thalianaTGAGAAGAAGAAGAAGAAAAalignmentplotGSM278335-4060AT5G16020.1 cdna:known chromosome:TAIR10:5:5229692:5232241:1 gene:AT5G16020 transcript:AT5G16020.10510.0330.122.5
5'     TGAGAAGAAGAAGAAGAAAA         3'
o|||||||||||||||| |
3' GCTTCTTCTTCTTCTTCTTCTTCTTCTTCCCA 5'
307Arabidopsis thalianaTCGGACCAGGCTTCATTCCCCalignmentplotGSM278335-4060AT3G48610.1 cdna:known chromosome:TAIR10:3:18011545:18014082:-1 gene:AT3G48610 transcript:AT3G48610.1216210.04223.5
5'    TCGG-ACCAGGCTTCATTCCCC        3'
|||| ||||o|||||||| ||
3' AATAGCCGTGGTTCGAAGTAACGGAGAAATGA 5'
308Arabidopsis thalianaGATGATGATGATACTCAGGAalignmentplotGSM278335-4060AT2G42360.1 cdna:known chromosome:TAIR10:2:17640798:17641790:1 gene:AT2G42360 transcript:AT2G42360.112380.02664
5'     GATGATGATGATA-CTCAGGA        3'
||o||||| |||| ||| o||
3' GCTTCTGCTACTCCTATTGAGGTCTATTTCTT 5'
309Arabidopsis thalianaGCGTACAGAGTAGTCAAGCATalignmentplotGSM278335-4060AT1G47670.1 cdna:known chromosome:TAIR10:1:17536667:17539538:-1 gene:AT1G47670 transcript:AT1G47670.1211490662.5
5'     GCGTACAGAGTAGTCAAGCAT        3'
||o||||o||o|| |||||||
3' CTTACGTATGTTTCGTC-GTTCGTATGGAGGA 5'
310Arabidopsis thalianaACTCGACCACGAAGTCGAGTalignmentplotGSM278335-4060AT4G01320.1 cdna:known chromosome:TAIR10:4:545796:549261:1 gene:AT4G01320 transcript:AT4G01320.125060.0213133
5'     ACTCGACCACGAA-GTCGAGT        3'
|||||| |||||| || ||||
3' GCTCTGAGCTAGTGCTTTCAACTCATGTTTCT 5'
311Arabidopsis thalianaTGGATTGGTCAAGGGAAGCGTalignmentplotGSM278335-4060AT5G23940.1 cdna:known chromosome:TAIR10:5:8076329:8079793:-1 gene:AT5G23940 transcript:AT5G23940.127140.03553
5'     TGGATTGGTCAAGGGAAGCGT        3'
| |||o||||||||o||| ||
3' CGGAAGCTAGCCAGTTCCTTTC-CAACTCAGC 5'
312Arabidopsis thalianaGAGTCCACCGGAGCCACTCTalignmentplotGSM278335-4060AT1G11850.2 cdna:known chromosome:TAIR10:1:3999202:3999876:1 gene:AT1G11850 transcript:AT1G11850.222960.05443.5
5'     GAGTCCACCGGAGCCACTCT         3'
|||||||||| o|||| ||
3' GCTCCTCAGGTGGCGGTGGTG-GAGGCTCAGG 5'
313Arabidopsis thalianaGCAAGATGATCACTGTGGTCalignmentplotGSM278335-4060AT1G77690.1 cdna:known chromosome:TAIR10:1:29200941:29203340:-1 gene:AT1G77690 transcript:AT1G77690.129630.03213.5
5'     GCAAGATGATCACTGTGGTC         3'
||| || ||||||||o|||
3' TACTCGTACTCCTAGTGACGCCATAGAGATTT 5'
314Arabidopsis thalianaTACTCGATCATGGGGTCGAGTalignmentplotGSM278335-4060AT2G05990.1 cdna:known chromosome:TAIR10:2:2322258:2325146:1 gene:AT2G05990 transcript:AT2G05990.1211310.0431.53.5
5'     TACTCGATCATGGGGTCGAGT        3'
|||||o||||||| ||| | |
3' CCTTATGAGTTAGTACCACAGAT-ACTTGGGT 5'
315Arabidopsis thalianaTGATCTCTTCGTACTCTTCTTGalignmentplotGSM278335-4060AT3G11120.1 cdna:known chromosome:TAIR10:3:3481052:3481448:1 gene:AT3G11120 transcript:AT3G11120.121060.05663.5
5'     TGATCTCTTCGTACTCTTCTTG       3'
|o|||||o||o||| ||||||
3' AGAAATTAGAGGAGTATGCGAAGAAGAAGGTG 5'
316Arabidopsis thalianaTCATCATCATCATCATCTTCTalignmentplotGSM278335-4060AT5G08600.2 cdna:novel chromosome:TAIR10:5:2786187:2790241:1 gene:AT5G08600 transcript:AT5G08600.224490.01190.05762990
5'     TCATCATCATCATCATCTTCT        3'
|||||||||||||||||||||
3' TAGTAGTAGTAGTAGTAGTAGAAGACTGAGGT 5'
317Arabidopsis thalianaTTCGCTTGCAGAGAGAAATCACalignmentplotGSM278335-4060AT2G39675.1 cdna:known chromosome:TAIR10:2:16537288:16538277:-1 gene:AT2G39675 transcript:AT2G39675.1037901101101.5
5'     TTCGCTTGCAGAGAGAAATCAC       3'
|||||||| |||||o|||||||
3' AGATAAGCGAACATCTCTTTTTAGTGTTGTTT 5'
318Arabidopsis thalianaACTTGGCTGATTCTATTATTalignmentplotGSM278335-4060AT3G03380.1 cdna:known chromosome:TAIR10:3:799615:808522:1 gene:AT3G03380 transcript:AT3G03380.1225850.04333
5'     ACTTGGCTGATTCTAT-TATT        3'
|||||||||||| o|| ||o|
3' TTCCTGAACCGACTAACGTATATGACCCTATG 5'
319Arabidopsis thalianaTCATCCTCATCATCATCGTCCalignmentplotGSM278335-4060AT5G37420.1 cdna:known chromosome:TAIR10:5:14840143:14842070:1 gene:AT5G37420 transcript:AT5G37420.1216640.05190.05762992
5'     TCATCCTCATCATCATCGTCC        3'
||||| |||||||||||| ||
3' TAGTAGTAGTAGTAGTAGTAGC-GGTAGTAGT 5'
320Arabidopsis thalianaTGCCTGGCTCCCTGTATGCCalignmentplotGSM278335-4060AT4G30080.1 cdna:known chromosome:TAIR10:4:14703201:14706336:-1 gene:AT4G30080 transcript:AT4G30080.101519032321.5
5'     TGCCTGGCTCCCTGTATGCC         3'
|||||||||||||||| o||
3' TAATACGGACCGAGGGACATTTGGGTGCCCTT 5'
321Arabidopsis thalianaGAGAGGAGAGAGTCTTTGTTalignmentplotGSM278335-4060AT4G22670.1 cdna:known chromosome:TAIR10:4:11918080:11920910:1 gene:AT4G22670 transcript:AT4G22670.1216100.04992.5
5'     GAGAGGAGAGAGTCTTTGTT         3'
o||||o|o||||| ||||||
3' TTGCTTCTCTTTTCTCA-AAACAAGGACAATT 5'
322Arabidopsis thalianaTTGATGATGCTGCAGCTGCAalignmentplotGSM278335-4060AT5G55230.1 cdna:known chromosome:TAIR10:5:22402028:22405492:1 gene:AT5G55230 transcript:AT5G55230.1218810.0352.53
5'     TTGATGATGCTGCAGCTGCA         3'
|||||||| ||||||| ||
3' CTTGAACTACTA-GACGTCGTGGTCTTTGACC 5'
323Arabidopsis thalianaTGACAGAAGAAAGAGAGCACalignmentplotGSM278370-4061AT4G19150.1 cdna:known chromosome:TAIR10:4:10471331:10472742:-1 gene:AT4G19150 transcript:AT4G19150.1010180.0514143.5
5'     TGACAGAAGAAAGAGAGCAC         3'
| |||||| |||||o||||
3' AGTAAATGTCTT-TTTCTTTCGTTATGTCTCT 5'
324Arabidopsis thalianaTTTGGATTGAAGGGAGCTCTTalignmentplotGSM278370-4061AT5G06100.3 cdna:known chromosome:TAIR10:5:1837907:1840417:1 gene:AT5G06100 transcript:AT5G06100.301260071.753.5
5'     TTTGGATTGAAGGGAGCTCTT        3'
||||| ||||||||||||o
3' CTTATAACCTTACTTCCCTCGAGGTCGAAGTG 5'
325Arabidopsis thalianaTCGGCTTCAGCTCTTCCATCalignmentplotGSM278370-4061AT5G22860.1 cdna:known chromosome:TAIR10:5:7639318:7642984:-1 gene:AT5G22860 transcript:AT5G22860.1211220.05213
5'     TCGGCTTCAGCTCTTCCATC         3'
|| ||| ||||||| |||||
3' ATAGAG-CGACGTCGAGACGGTAGAGGTACGC 5'
326Arabidopsis thalianaTCGACCTCAAGGTCGAGTGAalignmentplotGSM278370-4061AT1G75350.1 cdna:known chromosome:TAIR10:1:28272071:28272832:1 gene:AT1G75350 transcript:AT1G75350.123870.0240403.5
5'    TCGACC-TCAAGGTCGAGTGA         3'
||o||| ||||o|o|||oo||
3' CGTAGTTGGTAGTTTCGGCTTGCTAAGGGCTC 5'
327Arabidopsis thalianaTGGGTTCGAGGAACGCCAAGalignmentplotGSM278370-4061AT3G61470.1 cdna:known chromosome:TAIR10:3:22745653:22747282:1 gene:AT3G61470 transcript:AT3G61470.123250.0515154
5'    TGGGTTCGA-GGAACGCCAAG         3'
o||||o||| |o|| o|||||
3' CAGGCCCAGGCTACTTTCTGGTTCTCCTAGTT 5'
328Arabidopsis thalianaTTTGCTTCCAGCTTTTGTCTCalignmentplotGSM278370-4061AT1G35260.1 cdna:known chromosome:TAIR10:1:12936849:12937787:-1 gene:AT1G35260 transcript:AT1G35260.102450.022914.54
5'     TTTGCTTCCAGCTTTTGTCTC        3'
| ||||||||o||||| o| |
3' TCTCATACGAAGGTTGAAAAGGG-GTGAGCGG 5'
329Arabidopsis thalianaTGACAGAAGAAAGAGAGCACalignmentplotGSM278370-4061AT1G27360.3 cdna:known chromosome:TAIR10:1:9501777:9503869:1 gene:AT1G27360 transcript:AT1G27360.30125002461
5'     TGACAGAAGAAAGAGAGCAC         3'
|||||||||| |||||||||
3' TCCAACTGTCTTCTCTCTCTCGTGCCACCTAT 5'
330Arabidopsis thalianaCACGTTGCAGATTCTTCATTAalignmentplotGSM278370-4061AT3G15950.1 cdna:known chromosome:TAIR10:3:5397569:5402652:-1 gene:AT3G15950 transcript:AT3G15950.124760.0331.53.5
5'     CACGTTGCAGATTCTTCATTA        3'
| | |||||| ||||||||o|
3' TACAGAGGAACGTCGAAGAAGTAGTAGAAATC 5'
331Arabidopsis thalianaTTCGCTTGCAGAGAGAAATCACalignmentplotGSM278370-4061AT2G27400.1 cdna:known chromosome:TAIR10:2:11721539:11722468:-1 gene:AT2G27400 transcript:AT2G27400.10379029291.5
5'     TTCGCTTGCAGAGAGAAATCAC       3'
|||||||| |||||o|||||||
3' GAGTAAGCGAACATCTCTTTTTAGTGTTGTTT 5'
332Arabidopsis thalianaTGCACTGCCTCTTCCCTGGCTalignmentplotGSM278370-4061AT2G44790.1 cdna:known chromosome:TAIR10:2:18461906:18463309:-1 gene:AT2G44790 transcript:AT2G44790.10709016163.5
5'     TGCACTGCCTCTTCCCTGGCT        3'
|||||| |||o ||||||||
3' GTTTTCGTGACTGAGGTGGGACCGAGAGATTT 5'
333Arabidopsis thalianaTGGAGCCATGGTGGGAGCTGalignmentplotGSM278370-4061AT4G26550.1 cdna:known chromosome:TAIR10:4:13402515:13404345:-1 gene:AT4G26550 transcript:AT4G26550.105840.0120204
5'     TGGAGCCATG-GTGGGAGCTG        3'
o|o|| |||| ||| ||||||
3' GGTAGCTTCTGTACACACGCTCGACTAAAAAT 5'
334Arabidopsis thalianaTCAATAGATTGGACTATGTATalignmentplotGSM278370-4061AT5G40060.1 cdna:known chromosome:TAIR10:5:16034576:16039096:1 gene:AT5G40060 transcript:AT5G40060.1136860334
5'     TCAATAGATTGGACTATGTAT        3'
|||| ||||||o| o|| |||
3' GTTGAGTT-TCTAACTTTGTAAATATGTATAT 5'
335Arabidopsis thalianaAAGAAGGAGGAACAACCTGTTGalignmentplotGSM278370-4061AT2G26690.1 cdna:known chromosome:TAIR10:2:11347147:11350993:-1 gene:AT2G26690 transcript:AT2G26690.126440.01333
5'     AAGAAGGAGGAACAACCTGTTG       3'
|| ||o||o||| |||||||||
3' ATGATTATTTCTTCTTCTTGGACAACTTCTTC 5'
336Arabidopsis thalianaTAGAAGGGAGTGAGTTCTCGalignmentplotGSM278370-4061AT5G38660.2 cdna:known chromosome:TAIR10:5:15470900:15475585:-1 gene:AT5G38660 transcript:AT5G38660.228340.031473
5'     TAGAAGGGAGTGAGTTCTCG         3'
||||||o|||||o|| |||
3' AGGTTTCTTCCTTCACTTAA-AGCGGACAGAA 5'
337Arabidopsis thalianaTTAGATGACCATCAACAAACTalignmentplotGSM278370-4061AT1G02860.1 cdna:known chromosome:TAIR10:1:635144:637262:1 gene:AT1G02860 transcript:AT1G02860.12269031.51
5'     TTAGATGACCATCAACAAACT        3'
||||||||||||||||||||
3' TTTAAATCTACTGGTAGTTGTTTGTTTAAGTC 5'
338Arabidopsis thalianaCTGAAGTGTTTGGGGGGACTCalignmentplotGSM278370-4061AT5G10180.1 cdna:known chromosome:TAIR10:5:3193144:3197120:1 gene:AT5G10180 transcript:AT5G10180.121360.01443
5'     CTGAAGTGTTTGGGGGGACTC        3'
|||||||||||||o|o|||
3' CTTAAACTTCACAAACCCTCTTGAACTACACT 5'
339Arabidopsis thalianaTCGGACCAGGCTTCATTCCCCalignmentplotGSM278370-4061AT1G52150.1 cdna:known chromosome:TAIR10:1:19409711:19414678:-1 gene:AT1G52150 transcript:AT1G52150.12127904113.66672.5
5'     TCGGACCAGGCTTCATTCCCC        3'
o||||||||||||||||||
3' CTTAGGCCTGGTCCGAAGTAAGGTCCGTAGAC 5'
340Arabidopsis thalianaTTCTTCTTCAAAGGCTTTTACalignmentplotGSM278370-4061AT5G25580.1 cdna:known chromosome:TAIR10:5:8903505:8906311:1 gene:AT5G25580 transcript:AT5G25580.1113040553.5
5'     TTCTTCTTCAAAGGCTTTT-AC       3'
|| || ||||||o|||||| ||
3' ACAAAACAACAAGTTTTCGAAAAATGATAAAG 5'
341Arabidopsis thalianaTGGAGAAGCAGGGCACGTGCGalignmentplotGSM278370-4061AT1G56010.1 cdna:known chromosome:TAIR10:1:20946571:20948040:-1 gene:AT1G56010 transcript:AT1G56010.12788031.52
5'     TGGAGAAGCAGGGCACGTGCG        3'
||||||||||||| ||||||
3' TTTAACCTCTTCGTCCCATGCACGAGTAACTA 5'
342Arabidopsis thalianaTCATCATCATCATCATCTTCCalignmentplotGSM278370-4061AT1G03530.1 cdna:known chromosome:TAIR10:1:880496:883391:-1 gene:AT1G03530 transcript:AT1G03530.1210240.04411.952381
5'     TCATCATCATCATCATCTTCC        3'
||||||||||||||||| |||
3' TAGTAGTAGTAGTAGTAGTAGTAGGAGTAGGA 5'
343Arabidopsis thalianaTGTCTTCATCGTCATCACAAalignmentplotGSM278370-4061AT5G37430.1 cdna:known chromosome:TAIR10:5:14842430:14844308:1 gene:AT5G37430 transcript:AT5G37430.1117890.02674.466674
5'     TGTCTTCATCGTCATCACAA         3'
oo|| |||o|o||||||| |
3' AGTAGTAGTAGTGGTAGTAGTGGTAGTAGTAG 5'
344Arabidopsis thalianaTGTCTTCATCGTCATCACAAalignmentplotGSM278370-4061AT5G37430.1 cdna:known chromosome:TAIR10:5:14842430:14844308:1 gene:AT5G37430 transcript:AT5G37430.1117560.05674.466674
5'     TGTCTTCATCGTCATCACAA         3'
oo|| |||o|o||||||| |
3' AGTAGTAGTAGTGGTAGTAGTGGTAGTAGTAG 5'
345Arabidopsis thalianaTTCCACAGCTTTCTTGAACTTalignmentplotGSM278370-4061AT5G27850.1 cdna:known chromosome:TAIR10:5:9873152:9874598:1 gene:AT5G27850 transcript:AT5G27850.125420.0521213
5'    TTCCAC-AGCTTTCTTGAACTT        3'
|||| | ||||||||oo|||||
3' CGAAAGGAGATCGAAAGAGTTTGAAGGAAGGG 5'
346Arabidopsis thalianaACTCGACCAGGGGGTCGAGTalignmentplotGSM278370-4061AT5G13930.1 cdna:known chromosome:TAIR10:5:4488688:4490264:1 gene:AT5G13930 transcript:AT5G13930.127140.05774
5'     ACTCGACCAGGGGGTCGAGT         3'
|| |||| ||||o|||o||
3' GGACTG-GCTGCTCCCTCAGTTCCACCCACAG 5'
347Arabidopsis thalianaGACAGAAGAGAGTGAGCACalignmentplotGSM278370-4061AT1G03730.1 cdna:known chromosome:TAIR10:1:930828:931895:-1 gene:AT1G03730 transcript:AT1G03730.12251030.03333332
5'     GACAGAAGAGAGTGAGCAC          3'
|| ||||||||| ||||||
3' TCTTCT-TCTTCTCTCTCTCGTGTTTTTTTTT 5'
348Arabidopsis thalianaTCCGGAGGGATTCCTTCCTTalignmentplotGSM278370-4061AT5G03240.2 cdna:known chromosome:TAIR10:5:771752:773165:-1 gene:AT5G03240 transcript:AT5G03240.22604051.250
5'     TCCGGAGGGATTCCTTCCTT         3'
||||||||||||||||||||
3' GACTAGGCCTCCCTAAGGAAGGAACAGGACCT 5'
349Arabidopsis thalianaGATGCATCTTCACCAGGTGGAalignmentplotGSM278370-4061AT4G33380.1 cdna:known chromosome:TAIR10:4:16071892:16074873:1 gene:AT4G33380 transcript:AT4G33380.104310334
5'     GATGCATCTTCACCAGGTGGA        3'
|| || |||||||||o ||o|
3' CGAACT-CGAAGAAGTGGTTAACTTCTTAGTC 5'
350Arabidopsis thalianaGAGGAGGAGGAGCACCACCGTalignmentplotGSM278370-4061AT1G13930.1 cdna:known chromosome:TAIR10:1:4761042:4761725:1 gene:AT1G13930 transcript:AT1G13930.123920144.666673
5'     GAGGAGGAGGAGCACCACCGT        3'
||||||||||| ||||| |oo
3' CAGCCTCCTCCTCCTGGTGGTCGTGGCCACCT 5'
351Arabidopsis thalianaTGGAGAAGCAGGGCACGTGCGalignmentplotGSM278370-4061AT5G39610.1 cdna:known chromosome:TAIR10:5:15858400:15859788:-1 gene:AT5G39610 transcript:AT5G39610.127810662.5
5'     TGGAGAAGCAGGGCACGTGCG        3'
o||||||||||| |||||| |
3' ACCAGCCTCTTCGTCCAGTGCACTCTGCTGCT 5'
352Arabidopsis thalianaTGACAGAAGAAAGAGAGCACalignmentplotGSM278370-4061AT1G53160.1 cdna:known chromosome:TAIR10:1:19806421:19807301:1 gene:AT1G53160 transcript:AT1G53160.116020332
5'     TGACAGAAGAAAGAGAGCAC         3'
|||||||||| ||||||||
3' ATCTACTGTCTTCTCTCTCTCGTCTGTCGAAG 5'
353Arabidopsis thalianaCTTGTGGAGAGGAAGCAAGAalignmentplotGSM278370-4061AT4G00230.1 cdna:known chromosome:TAIR10:4:93923:97454:1 gene:AT4G00230 transcript:AT4G00230.1114590.01333.5
5'    CTTG-TGGAGAGGAAGCAAGA         3'
|||| ||o|o|o||||||| |
3' GGAGAACTACTTTTTCTTCGTTGTTTACCTCG 5'
354Arabidopsis thalianaTTTGGCGCTATCCATCCTGAalignmentplotGSM278370-4061AT5G36290.2 cdna:known chromosome:TAIR10:5:14302740:14305176:1 gene:AT5G36290 transcript:AT5G36290.226500.0373.53.5
5'     TTTGGCGCTATCCATCCTGA         3'
||||||o|||||| | |oo|
3' GTTCAAACCGTGATAGG-ATGGTTCAGGTCAT 5'
355Arabidopsis thalianaGATGATGATGATACTCAGGAalignmentplotGSM278370-4061AT3G15070.2 cdna:known chromosome:TAIR10:3:5070273:5073356:-1 gene:AT3G15070 transcript:AT3G15070.203230.05424
5'     GATGATGATGATACTCAGGA         3'
| |||||||| |||| |||
3' CGTACAACTACTACCATGACACCTCCGGGCAT 5'
356Arabidopsis thalianaTCTTCTTCGTCGCCATTACTalignmentplotGSM278370-4061AT4G13850.4 cdna:known chromosome:TAIR10:4:8020951:8022221:1 gene:AT4G13850 transcript:AT4G13850.404260.0452134
5'     TCTTCTTCGTCGCCATTACT         3'
o||o||o|o| ||||oo|||
3' TGGTGGAGGAGGTATCGGTGGTGAACCAGATA 5'
357Arabidopsis thalianaTAGCCAAGGATGACTTGCCTGalignmentplotGSM278370-4061AT1G17590.2 cdna:known chromosome:TAIR10:1:6050222:6052513:-1 gene:AT1G17590 transcript:AT1G17590.221210030.752.5
5'     TAGCCAAGGATGACTTGCCTG        3'
o||||||||||||||| |||
3' CATCGTCGGTTCCTACTGAAGGGAAAAAAACA 5'
358Arabidopsis thalianaCTCGACCTGAGGGTCGAGTGGTalignmentplotGSM278370-4061AT4G34050.1 cdna:known chromosome:TAIR10:4:16310775:16312216:1 gene:AT4G34050 transcript:AT4G34050.127860.021684
5'     CTCGACCTGAGGGTCGAGTGGT       3'
||||| |o||||||| ||oo|o
3' TCTAGAGCTAGGCTCCCAG-TCGTCGTTCTCG 5'
359Arabidopsis thalianaTCTTCTTCGTCGCCATTACTalignmentplotGSM278370-4061AT1G61065.1 cdna:known chromosome:TAIR10:1:22490244:22491461:-1 gene:AT1G61065 transcript:AT1G61065.12600.01110.01557292.5
5'     TCTTCTTCGTCGCCATTACT         3'
|||||||| ||| ||o||||
3' AAGAAGAAGAAGAAGCTGTGATGACAAAGACC 5'
360Arabidopsis thalianaTGACAGAAGAAAGAGAGCACalignmentplotGSM278370-4061AT1G27370.1 cdna:known chromosome:TAIR10:1:9505201:9508280:-1 gene:AT1G27370 transcript:AT1G27370.112378061.51
5'     TGACAGAAGAAAGAGAGCAC         3'
|||||||||| |||||||||
3' ATCAACTGTCTTCTCTCTCTCGTGACATCTTT 5'
361Arabidopsis thalianaTTGGCATTCTGTCCACCTCCalignmentplotGSM278370-4061AT3G12120.1 cdna:known chromosome:TAIR10:3:3860285:3863050:-1 gene:AT3G12120 transcript:AT3G12120.121920.0152.53
5'     TTGGCATTCTGTCCACCTCC         3'
oo|||||||| ||||||| |
3' CCTTGGCCGTAAGA-AGGTGGACGTGGGTACA 5'
362Arabidopsis thalianaTTGACAGAAGATAGAGAGCACalignmentplotGSM278370-4061AT1G27370.1 cdna:known chromosome:TAIR10:1:9505201:9508280:-1 gene:AT1G27370 transcript:AT1G27370.122379030.751
5'     TTGACAGAAGATAGAGAGCAC        3'
||||||||||| |||||||||
3' CATCAACTGTCTTCTCTCTCTCGTGACATCTT 5'
363Arabidopsis thalianaTAATTTGGTGTTTCTTCGATCalignmentplotGSM278370-4061AT3G58820.1 cdna:known chromosome:TAIR10:3:21752533:21754615:1 gene:AT3G58820 transcript:AT3G58820.1013010.0120.6666673.5
5'     TAATTTGGTGT-TTCTTCGATC       3'
|||o||| ||| |||||| |||
3' AGCTATTGAACAACATAAGAAGGTAGTAGACG 5'
364Arabidopsis thalianaGAACCCAAGACCTCACCCTTalignmentplotGSM278370-4061AT3G57410.1 cdna:known chromosome:TAIR10:3:21243136:21251100:-1 gene:AT3G57410 transcript:AT3G57410.1232330663
5'     GAACCCAAGACCTCACCCTT         3'
o|||||||o||| ||||| |
3' TTAGTTTGGGTTTTGG-GTGGGTACTCTTTCT 5'
365Arabidopsis thalianaTGATTGAGCCGTGTCAATATCalignmentplotGSM278370-4061AT3G60630.1 cdna:known chromosome:TAIR10:3:22410365:22412608:-1 gene:AT3G60630 transcript:AT3G60630.101056030301
5'     TGATTGAGCCGTGTCAATATC        3'
|||||||||||o|o|||||||
3' CAACACTAACTCGGCGCGGTTATAGGGAACGC 5'
366Arabidopsis thalianaTTGAGCCGTGCCAATATCACGalignmentplotGSM278370-4061AT3G60630.1 cdna:known chromosome:TAIR10:3:22410365:22412608:-1 gene:AT3G60630 transcript:AT3G60630.1210530552.5
5'     TTGAGCCGTGCCAATATCACG        3'
||||||||o||||||||| |
3' CACTAACTCGGCGCGGTTATAGGGAACGCGCT 5'
367Arabidopsis thalianaTCATGGTCGTGATCGTGGTCATCalignmentplotGSM278370-4061AT1G47970.1 cdna:known chromosome:TAIR10:1:17687269:17688816:1 gene:AT1G47970 transcript:AT1G47970.123900.02444
5'     TCATGGTCGTGATCGTGGTCATC      3'
|||| ||||| |||o| o|||||
3' TAGTAGTAGCAGCAGTAGTAGTAGTAGAGGTA 5'
368Arabidopsis thalianaTTCGCTTGCAGAGAGAAATCACalignmentplotGSM278370-4061AT2G39681.1 cdna:known chromosome:TAIR10:2:16539384:16540417:-1 gene:AT2G39681 transcript:AT2G39681.12418055551.5
5'     TTCGCTTGCAGAGAGAAATCAC       3'
|||||||| |||||o|||||||
3' TAGTAAGCGAACCTCTCTTTTTAGTGTTTTGG 5'
369Arabidopsis thalianaCAAGCACAACATATCCTCTTalignmentplotGSM278370-4061AT5G13030.1 cdna:known chromosome:TAIR10:5:4133204:4136688:1 gene:AT5G13030 transcript:AT5G13030.11150444
5'    CAAGC-ACAACATATCCTCTT         3'
|| || ||||||| || ||||
3' TGTGTGCGTTGTTGTAAAGAAGAAGGAA 5'
370Arabidopsis thalianaTCATCTTCATCATCATCATCTalignmentplotGSM278370-4061AT4G38480.1 cdna:known chromosome:TAIR10:4:18003916:18006140:1 gene:AT4G38480 transcript:AT4G38480.1014080.0230.31.5
5'     TCATCTTCATCATCATCATCT        3'
||||| ||||||||||||||o
3' GAGTAGTAGTAGTAGTAGTAGTAGGGGTACTA 5'
371Arabidopsis thalianaCTCTCTTTCTCCATGGCTGACalignmentplotGSM278370-4061AT1G79550.1 cdna:known chromosome:TAIR10:1:29924023:29926442:-1 gene:AT1G79550 transcript:AT1G79550.129140.0452.53.5
5'    CTCT-CTTTCTCCATGGCTGAC        3'
|| | |||||||||||o ||||
3' CCGGAAACGAAAGAGGTACTCACTGAAACGGT 5'
372Arabidopsis thalianaTTAGATTCACGCACAAACTCGalignmentplotGSM278370-4061AT1G31280.1 cdna:known chromosome:TAIR10:1:11181711:11185344:1 gene:AT1G31280 transcript:AT1G31280.103233027271
5'     TTAGATTCACGCACAAACTCG        3'
||||||||||||||||||||
3' GGTTAATCTAAGTGCGTGTTTGAGGAAAGATG 5'
373Arabidopsis thalianaTCCAAAGGGATCGCATTGATCCalignmentplotGSM278370-4061AT1G12820.1 cdna:known chromosome:TAIR10:1:4368760:4371293:-1 gene:AT1G12820 transcript:AT1G12820.101895023232
5'     TCCAAAGGGATCGCATTGATCC       3'
|||||||||||||||||| | |
3' CTGTAGGTTTCCCTAGCGTAACAAAGCATGGA 5'
374Arabidopsis thalianaACCGTCGAGAATTTTGGAGAAalignmentplotGSM278370-4061AT5G23160.1 cdna:known chromosome:TAIR10:5:7795256:7796346:-1 gene:AT5G23160 transcript:AT5G23160.11887010104
5'     ACCGTCGAGAATTTTGGAGAA        3'
|||o||o||| ||| o||o||
3' AATGTGGTAGTTCT-AAACTCTTTTATTTATT 5'
375Arabidopsis thalianaAAAGTCGCAATTCCCTTGCAACAalignmentplotGSM278370-4061AT5G67030.2 cdna:known chromosome:TAIR10:5:26753522:26757236:-1 gene:AT5G67030 transcript:AT5G67030.229550.01214
5'    AAAGTC-GCAATTCCCTTGCAACA      3'
|||o|| |||||o||| || ||||
3' ATATTTTAGACGTTAGGGGCACATTGTTCACA 5'
376Arabidopsis thalianaTGACAGAAGAAAGAGAGCACalignmentplotGSM278370-4061AT3G15270.1 cdna:known chromosome:TAIR10:3:5140365:5141348:-1 gene:AT3G15270 transcript:AT3G15270.106550.0241413
5'     TGACAGAAGAAAGAGAGCAC         3'
|||||||||| |||||||
3' ATCTACTGTCTTCTCTCTCTCGCCCTCCCAAA 5'
377Arabidopsis thalianaTTCGAGGCCTATTAAACCTCTGalignmentplotGSM278370-4061AT5G54770.1 cdna:known chromosome:TAIR10:5:22246592:22248332:1 gene:AT5G54770 transcript:AT5G54770.1211790.0115154
5'     TTCGAGGCCTATTAAACCTCTG       3'
|||o||o| |||||||| o||o
3' TTTCAAGTTCTGTATAATTTGTGGATTTGAGG 5'
378Arabidopsis thalianaAGAGATACGACGGAGATGGAalignmentplotGSM278370-4061AT5G39471.1 cdna:known chromosome:TAIR10:5:15793965:15795596:-1 gene:AT5G39471 transcript:AT5G39471.114980.04224
5'     AGAGATACGACGGAGATGGA         3'
|||||||||| || ||| |
3' GTACTCTCTATGCTACCAGTAC-TGCCAACTA 5'
379Arabidopsis thalianaGTGACGGTGGGACGAATGTTalignmentplotGSM278370-4061AT4G34830.1 cdna:known chromosome:TAIR10:4:16599605:16606027:-1 gene:AT4G34830 transcript:AT4G34830.103429031314
5'     GTGACGGTGGGACGAATGTT         3'
|o|||| | ||| |||||o|
3' ACGACGCTGCGA-CCTCCTTACGACACTACAT 5'
380Arabidopsis thalianaGAGGTGAAGACACTCGGCCTCGalignmentplotGSM278370-4061AT5G32510.2 cdna:pseudogene chromosome:TAIR10:5:12138752:12139374:-1 gene:AT5G32510 transcript:AT5G32510.211880332
5'     GAGGTGAAGACACTCGGCCTCG       3'
||||||||||||| ||o||||o
3' CTACCTCCACTTCTGTGTGCTGGAGTACCAGC 5'
381Arabidopsis thalianaAAACGACGTCGTTTCGTTCTalignmentplotGSM278370-4061AT1G75750.1 cdna:known chromosome:TAIR10:1:28441526:28442367:-1 gene:AT1G75750 transcript:AT1G75750.124190.0273.53
5'     AAACGACGTCGTTTCGTTCT         3'
|||||||o||||oo|o|| |
3' TTGTTTTGCTGTAGCAGGGTAATAGGCGTCGT 5'
382Arabidopsis thalianaGGCGCCTCTCCATTGGCAGGalignmentplotGSM278370-4061AT5G13370.1 cdna:known chromosome:TAIR10:5:4286819:4289554:1 gene:AT5G13370 transcript:AT5G13370.124160.0171.753.5
5'     GGCGCCTCTCCATTGGCAGG         3'
|o|| |||||||||o|| |o
3' TAGTCTGCCGAGAGGTAATCG-CTATGCCAGC 5'
383Arabidopsis thalianaGGAATCTTGATGATGCTGCATalignmentplotGSM278370-4061AT4G36920.1 cdna:known chromosome:TAIR10:4:17400847:17403332:1 gene:AT4G36920 transcript:AT4G36920.10134001892
5'     GGAATCTTGATGATGCTGCAT        3'
o|||||o|||||||||||||
3' CCTCTCTTAGGACTACTACGACGTCGTAAACA 5'
384Arabidopsis thalianaGATTCTTCTGAGCTAGCCTCalignmentplotGSM278370-4061AT5G04140.1 cdna:known chromosome:TAIR10:5:1129852:1138442:1 gene:AT5G04140 transcript:AT5G04140.1226070.0531.53.5
5'     GATTCTTCTGAGCTAGCCTC         3'
o |||||||||||| || ||
3' CACATCAAGAAGACTCGAACG-AGTTACCAAT 5'
385Arabidopsis thalianaGGCGCCTCTCCATTGGCAGGalignmentplotGSM278370-4061AT5G19090.1 cdna:known chromosome:TAIR10:5:6387489:6390024:1 gene:AT5G19090 transcript:AT5G19090.101458051.666673.5
5'     GGCGCCTCTCCATTGGCAGG         3'
o |||||| |||||||| ||
3' GTGGTGGCGGAG-GGTAACCGGCCTTTGGACC 5'
386Arabidopsis thalianaGGATTTGCTTACTTTGGCCTTalignmentplotGSM278370-4061AT3G09260.1 cdna:known chromosome:TAIR10:3:2840477:2843781:-1 gene:AT3G09260 transcript:AT3G09260.1212770883
5'     GGATTTGCTTACTTTGGCCTT        3'
|||||||| || |||| ||||
3' AAGGCCTAAACGCAT-AAACAGGAATTACATG 5'
387Arabidopsis thalianaGGCGCCTCTCCATTGGCAGGalignmentplotGSM278370-4061AT5G13360.2 cdna:known chromosome:TAIR10:5:4283762:4286229:1 gene:AT5G13360 transcript:AT5G13360.20282071.753
5'     GGCGCCTCTCCATTGGCAGG         3'
|o|| |||||||||||| |o
3' TAGTCTGCCGAGAGGTAACCG-CTATGCTAGC 5'
388Arabidopsis thalianaACTCGACCACGAAGTCGAGTalignmentplotGSM278370-4061AT1G13440.2 cdna:known chromosome:TAIR10:1:4608196:4610647:-1 gene:AT1G13440 transcript:AT1G13440.224480.03623.5
5'     ACTCGACCACGAAGTCGAGT         3'
||||o|| ||o||||| ||o
3' CATCTGAGTTGTTGTTTCAG-TCGAGGTCGGA 5'
389Arabidopsis thalianaGACGGTGTCGATCGACACTGalignmentplotGSM278370-4061AT5G67440.1 cdna:known chromosome:TAIR10:5:26912707:26916294:-1 gene:AT5G67440 transcript:AT5G67440.1223070.04424
5'     GACGGTGTCGATCGA-CACTG        3'
|||||o|||||| | |||o|
3' TCAGCTGCCGCAGCTAAATAGTGGCTGCCATC 5'
390Arabidopsis thalianaCATCCAAGGTGTTTGTAGAAAalignmentplotGSM278370-4061AT4G17890.1 cdna:known chromosome:TAIR10:4:9937022:9939493:1 gene:AT4G17890 transcript:AT4G17890.123830.03213.5
5'     CATCCAAGGTGTTTGTAGAAA        3'
|||||| | ||o||| |||||
3' TCAGGTAGGTACAACGAACTTCTTTTGGACTC 5'
391Arabidopsis thalianaTTCCACAGCTTTCTTGAACTTalignmentplotGSM278370-4061AT2G22840.1 cdna:known chromosome:TAIR10:2:9728756:9731301:1 gene:AT2G22840 transcript:AT2G22840.127920.0339393
5'    TTCCACA-GCTTTCTTGAACTT        3'
||||||| ||||||||||||
3' CGGAAGGTGTCCGAAAGAACTTGCTACCGCCG 5'
392Arabidopsis thalianaGATTCTTCTGAGCTAGCCTCalignmentplotGSM278370-4061AT1G70610.1 cdna:known chromosome:TAIR10:1:26621961:26626503:1 gene:AT1G70610 transcript:AT1G70610.1110470.0110104
5'     GATTCTTCTGAGCTAGCCTC         3'
|| |||o||||o |||| ||
3' GACACT-AGAGGACTTAATCGAAGCGACAGAA 5'
393Arabidopsis thalianaACTCGACCTGGAGGTCGAGTGalignmentplotGSM278370-4061AT1G07930.1 cdna:known chromosome:TAIR10:1:2458244:2460790:1 gene:AT1G07930 transcript:AT1G07930.122120.0430.64
5'     ACTCGACCTGGAGGTCGAGTG        3'
||o|o|| || ||o||o||||
3' ATGGTGGGTTGAACATCTAGTTCACAGGTCAC 5'
394Arabidopsis thalianaTCAATGCATTGAAAGTGACTAalignmentplotGSM278370-4061AT1G63330.1 cdna:known chromosome:TAIR10:1:23489840:23491519:1 gene:AT1G63330 transcript:AT1G63330.10775092.251
5'     TCAATGCATTGAAAGTGACTA        3'
||||||||||||| |||||||
3' AGCTAGTTACGTAACTTGCACTGATTTAATCC 5'
395Arabidopsis thalianaTGACAGAAGAAAGAGAGCACalignmentplotGSM278370-4061AT5G43270.2 cdna:known chromosome:TAIR10:5:17360305:17363773:-1 gene:AT5G43270 transcript:AT5G43270.2011590205.083331
5'     TGACAGAAGAAAGAGAGCAC         3'
|||||||||| |||||||||
3' TTAAACTGTCTTCTCTCTCTCGTGGTAGTTCT 5'
396Arabidopsis thalianaGAGCATTGTGGAGATCAAATalignmentplotGSM278370-4061AT1G65060.2 cdna:known chromosome:TAIR10:1:24167202:24171502:-1 gene:AT1G65060 transcript:AT1G65060.22195102713.52.5
5'     GAGCATTGTGGAGATCAAAT         3'
o||||||||||| | |||||
3' GTGTTTCGTAACACCTAT-GTTTACTTGCAAA 5'
397Arabidopsis thalianaTGCCTGGCTCCCTGTATGCCalignmentplotGSM278370-4061AT2G28350.1 cdna:known chromosome:TAIR10:2:12114331:12116848:1 gene:AT2G28350 transcript:AT2G28350.101340025251
5'     TGCCTGGCTCCCTGTATGCC         3'
||||||||||||||||| ||
3' TCGAACGGACCGAGGGACATAAGGACGTCCTC 5'
398Arabidopsis thalianaGGTGATGCCATCTACTCGACalignmentplotGSM278370-4061AT3G16010.1 cdna:known chromosome:TAIR10:3:5434014:5436264:1 gene:AT3G16010 transcript:AT3G16010.1219820.04444
5'     GGTGATGCCATC-TACTCGAC        3'
o|||||| |||| |||||o|
3' TCATTCACTACCGTAGTATGAGTTTCGGAAAT 5'
399Arabidopsis thalianaTCGACCAGGGGGTCGAGTGATalignmentplotGSM278370-4061AT1G70730.3 cdna:known chromosome:TAIR10:1:26669020:26673166:-1 gene:AT1G70730 transcript:AT1G70730.3219130.05314
5'     TCGACCAGGGGGTCGAGTG-AT       3'
||o||||||||oo|o|| | ||
3' TTGTAGTTGGTCCCCTGGTTCTCGTAGGACTC 5'
400Arabidopsis thalianaTTGACAGAAGATAGAGAGCACalignmentplotGSM278370-4061AT5G43270.2 cdna:known chromosome:TAIR10:5:17360305:17363773:-1 gene:AT5G43270 transcript:AT5G43270.2211600931
5'     TTGACAGAAGATAGAGAGCAC        3'
||||||||||| |||||||||
3' CTTAAACTGTCTTCTCTCTCTCGTGGTAGTTC 5'
401Arabidopsis thalianaTTGGACTGAAGGGAGCTCCalignmentplotGSM278370-4061AT3G15030.2 cdna:known chromosome:TAIR10:3:5061681:5064038:1 gene:AT3G15030 transcript:AT3G15030.2214870.011242.5
5'     TTGGACTGAAGGGAGCTCC          3'
o|||||||||||| o|o||
3' CATTGACCTGACTTCCCCTGGGGAGACTCTTA 5'
402Arabidopsis thalianaTTGGACTGAAGGGAGCTCCCTalignmentplotGSM278370-4061AT3G15030.2 cdna:known chromosome:TAIR10:3:5061681:5064038:1 gene:AT3G15030 transcript:AT3G15030.2214870.011243.5
5'     TTGGACTGAAGGGAGCTCCCT        3'
o|||||||||||| o|o|| |
3' CATTGACCTGACTTCCCCTGGGG-AGACTCTT 5'
403Arabidopsis thalianaTAGAAGGGAGTGAGTTCTCGalignmentplotGSM278370-4061AT1G08930.2 cdna:known chromosome:TAIR10:1:2873465:2877270:1 gene:AT1G08930 transcript:AT1G08930.2213020.0252.53
5'     TAGAAGGGAGTGAGTTCTCG         3'
||| ||||||||||||| |
3' TCACTTCTACCCTCACTCAAGACCTTCTTACG 5'
404Arabidopsis thalianaGTTCCGGCGAGTCTGTTCCCalignmentplotGSM278370-4061AT3G26520.1 cdna:known chromosome:TAIR10:3:9722443:9723815:-1 gene:AT3G26520 transcript:AT3G26520.128010.0212123.5
5'     GTTCCGGCGAGTCTGTTCCC         3'
o||||||||||||oooo ||
3' CTATTAAGGCCGCTCAGGTGGTGGTTATTCTC 5'
405Arabidopsis thalianaTGTTGCCGTAGCTGCAGCGGCalignmentplotGSM278370-4061AT3G16100.1 cdna:known chromosome:TAIR10:3:5459172:5460790:1 gene:AT3G16100 transcript:AT3G16100.10686031314
5'     TGTTGCCGTAGCTGCAGCGGC        3'
|||||||| |||o |||| o|
3' AGAAACAACGGC-TCGGGGTCGATGTAGTTAC 5'
406Arabidopsis thalianaACCATCAATTCATCGTGGCCGalignmentplotGSM278370-4061AT4G18120.1 cdna:known chromosome:TAIR10:4:10038126:10042248:1 gene:AT4G18120 transcript:AT4G18120.10260802110.54
5'     ACCATCAATTCATCGTGGCCG        3'
|||||||||||| |o|| | o
3' GTGTTGGTAGTTAAGT-GTACAGATCTTGTTA 5'
407Arabidopsis thalianaTCTATCTTCTTCGTCTTCGATalignmentplotGSM278370-4061AT4G14380.1 cdna:known chromosome:TAIR10:4:8285766:8286772:1 gene:AT4G14380 transcript:AT4G14380.104570.0422114
5'     TCTATCTTCTTCGTCTTCGAT        3'
||| |||||||| ||||| |
3' AAGAAGA-AGAAGAAGAAGAAGAAAAACGAGA 5'
408Arabidopsis thalianaTTGTTCCCCTCCTAAAGGATalignmentplotGSM278370-4061AT1G48410.2 cdna:known chromosome:TAIR10:1:17886098:17892586:-1 gene:AT1G48410 transcript:AT1G48410.2230190.0372.333333.5
5'     TTGTTCCCCTCCTAAAGGAT         3'
|||||| | |||o||||o|o
3' TTTCAACAAGAGTAGGGTTTCTTGCACCATTA 5'
409Arabidopsis thalianaCCTCGCAAAAGTTGCGAGGGATalignmentplotGSM278370-4061AT3G19170.1 cdna:known chromosome:TAIR10:3:6625421:6632033:-1 gene:AT3G19170 transcript:AT3G19170.1233760.0441.74
5'     CCTCGCAAAAGTTGCGAGGGAT       3'
||||| |||||||| ||| | |
3' AAGTGGAGCTTTTTCAAC-CTCGCAAGTAACA 5'
410Arabidopsis thalianaCTATCATCATCATCCTCGTAAalignmentplotGSM278370-4061AT1G16150.1 cdna:known chromosome:TAIR10:1:5532415:5534877:1 gene:AT1G16150 transcript:AT1G16150.1021980.0430.33.5
5'     CTATCATCATCATCCTCGTAA        3'
| |||||||||||| ||o| |
3' AGTAG-TAGTAGTAGTAGTAGTAGTAGTAGTA 5'
411Arabidopsis thalianaGGTCGAGTGAAGTGATCGAGTalignmentplotGSM278370-4061AT4G33010.1 cdna:known chromosome:TAIR10:4:15926670:15931332:-1 gene:AT4G33010 transcript:AT4G33010.1234090.05424
5'     GGTCGAGTGAAGTGATCGAGT        3'
o ||||o||||o|o|| ||||
3' TACATAAGCTTACTTTATTATCTCATTCTCTG 5'
412Arabidopsis thalianaTCAATGCATTGAAAGTGACTAalignmentplotGSM278370-4061AT4G24230.1 cdna:known chromosome:TAIR10:4:12566631:12568821:-1 gene:AT4G24230 transcript:AT4G24230.1013160.0240.84
5'     TCAATGCATT-GAAAGTGACTA       3'
||||||||o| |||| oo||o|
3' TATTAGTTACGTGATCTTTAGTTGGTCAGGAG 5'
413Arabidopsis thalianaTCCTCCACCACCGAGAGCATTalignmentplotGSM278370-4061AT2G32690.1 cdna:known chromosome:TAIR10:2:13863717:13864596:-1 gene:AT2G32690 transcript:AT2G32690.126150.04266.53.5
5'     TCCTCCACCACCGAGAGCATT        3'
|||||||||||| |o || ||
3' CTGGAGGAGGTGGTGG-TTACGGAAATGGTTT 5'
414Arabidopsis thalianaTGATTGAGCCGTGTCAATATCalignmentplotGSM278370-4061AT2G45160.1 cdna:known chromosome:TAIR10:2:18617862:18620150:-1 gene:AT2G45160 transcript:AT2G45160.101014026261
5'     TGATTGAGCCGTGTCAATATC        3'
|||||||||||o|o|||||||
3' TACCACTAACTCGGCGCGGTTATAGGGAACGC 5'
415Arabidopsis thalianaAAACGACGTCGTTTCGTTCTalignmentplotGSM278370-4061AT5G61400.1 cdna:known chromosome:TAIR10:5:24681550:24683514:1 gene:AT5G61400 transcript:AT5G61400.116750.03444
5'     AAACGACGTCGTTTCGTTCT         3'
|||||||||o||||o| |
3' AGGGATTGCTGCAGTAAAGTA-GTTCTTCAAA 5'
416Arabidopsis thalianaTTGAGCCGTGCCAATATCACGalignmentplotGSM278370-4061AT2G45160.1 cdna:known chromosome:TAIR10:2:18617862:18620150:-1 gene:AT2G45160 transcript:AT2G45160.121011010102.5
5'     TTGAGCCGTGCCAATATCACG        3'
||||||||o||||||||| |
3' CACTAACTCGGCGCGGTTATAGGGAACGCGCT 5'
417Arabidopsis thalianaACATCATCATCATCATCTTCCalignmentplotGSM278370-4061AT5G52300.1 cdna:known chromosome:TAIR10:5:21237056:21239529:1 gene:AT5G52300 transcript:AT5G52300.123460.0152.51
5'     ACATCATCATCATCATCTTCC        3'
|| ||||||||||||||||||
3' AGTATG-AGTAGTAGTAGTAGAAGGTGTAGCA 5'
418Arabidopsis thalianaCACATCAGACGGTTGAGTTGCTalignmentplotGSM278370-4061AT3G11890.2 cdna:known chromosome:TAIR10:3:3755542:3757775:1 gene:AT3G11890 transcript:AT3G11890.2217770.04334
5'     CACATCAGACGGTTGAGTTGCT       3'
|||||||o||o|| || ||| |
3' ACTAGTGTAGTTTGTCACCT-AACAACGAGAC 5'
419Arabidopsis thalianaTCCATGAAATGCCATGAGAGalignmentplotGSM278370-4061AT1G77550.1 cdna:known chromosome:TAIR10:1:29138299:29143011:-1 gene:AT1G77550 transcript:AT1G77550.1112690.02554
5'     TCCATGAAATGCCATGAGAG         3'
||||| | ||o||||o| ||
3' AAGTAGGTAGTGTATGGTATT-TCTTCAAAGT 5'
420Arabidopsis thalianaTCTGCATGCTCCTTGTTGATGalignmentplotGSM278370-4061AT2G14610.1 cdna:known chromosome:TAIR10:2:6241704:6242463:-1 gene:AT2G14610 transcript:AT2G14610.105920.0129294
5'     TCTGCATGCTCCTTGTTGATG        3'
| || |||||||||o|||| o
3' ACGTATAC-TACGAGGAATAACTTTATGACTA 5'
421Arabidopsis thalianaGGAATCTTGATGATGCTGCATalignmentplotGSM278370-4061AT5G60120.2 cdna:known chromosome:TAIR10:5:24207689:24211743:1 gene:AT5G60120 transcript:AT5G60120.211821052.51
5'     GGAATCTTGATGATGCTGCAT        3'
o|||||o||||||||||||||
3' TCACTCTTAGGACTACTACGACGTAAACTTTT 5'
422Arabidopsis thalianaGAGCATTGTGGAGATCAAATalignmentplotGSM278370-4061AT1G34550.1 cdna:known chromosome:TAIR10:1:12646696:12652646:-1 gene:AT1G34550 transcript:AT1G34550.1221130.05223
5'     GAGCATTGTGGAGATCAAAT         3'
||o|| ||||o|||| ||||
3' GGAACTTGT-ACACTTCTAATTTACCAAATAG 5'
423Arabidopsis thalianaTCCAGTGTCGATCGACACTAGalignmentplotGSM278370-4061AT4G23670.1 cdna:known chromosome:TAIR10:4:12332560:12333804:-1 gene:AT4G23670 transcript:AT4G23670.126360.05554
5'     TCCAGTGTCGATCGACACTAG        3'
| ||o|o|||||||| | |||
3' TATTATGTTATAGCTAGCTCT-ATCACTACTG 5'
424Arabidopsis thalianaGTGAGTTTAGGGTTCTTGAAalignmentplotGSM278370-4061AT5G48810.1 cdna:known chromosome:TAIR10:5:19789067:19790334:-1 gene:AT5G48810 transcript:AT5G48810.10770.0321214
5'     GTGAGTTTAGGGTTCTTGAA         3'
|||||||| ||o| |||o |
3' TAGACACTCAAACCCTA-GAATGTGGTTGGCG 5'
425Arabidopsis thalianaTAGCCAAGGATGACTTGCCTGalignmentplotGSM278370-4061AT5G06510.1 cdna:known chromosome:TAIR10:5:1984991:1987044:1 gene:AT5G06510 transcript:AT5G06510.121078020.6666672.5
5'     TAGCCAAGGATGACTTGCCTG        3'
||||||o||||| |||||||
3' CGTACTCGGTTTCTACTAAACGGACAAATGTC 5'
426Arabidopsis thalianaGTGAGTTTAGGGTTCTTGAAalignmentplotGSM278370-4061AT3G52230.1 cdna:known chromosome:TAIR10:3:19371213:19372687:1 gene:AT3G52230 transcript:AT3G52230.12810772
5'     GTGAGTTTAGGGTTCTTGAA         3'
||||||||||||| |||||
3' CTAAAACTCAAATCCCAA-AACTTAACTTAGC 5'
427Arabidopsis thalianaTCCTCCACCACCGAGAGCATalignmentplotGSM278370-4061AT2G32690.4 cdna:known chromosome:TAIR10:2:13863717:13864596:-1 gene:AT2G32690 transcript:AT2G32690.425280.05266.53.5
5'     TCCTCCACCACCGAGAGCAT         3'
|||||||||||| |o || |
3' CTGGAGGAGGTGGTGG-TTACGGAAATGGTTT 5'
428Arabidopsis thalianaTATGAGAGTATTATAAGTCACalignmentplotGSM278370-4061AT1G06580.1 cdna:known chromosome:TAIR10:1:2014003:2016054:-1 gene:AT1G06580 transcript:AT1G06580.1210960770
5'     TATGAGAGTATTATAAGTCAC        3'
|||||||||||||||||||||
3' GTAAATACTCTCATAATATTCAGTGACGTAAA 5'
429Arabidopsis thalianaATGCACTGCCTCTTCCCTGGCalignmentplotGSM278370-4061AT1G72230.1 cdna:known chromosome:TAIR10:1:27188066:27189244:1 gene:AT1G72230 transcript:AT1G72230.128240.04444
5'     ATGCACTGCCTCTTCCCTGGC        3'
| ||||||||||| |||||
3' ATTGT-CGTGACGGAGATCGGACCAGGAAGTT 5'
430Arabidopsis thalianaTATTCGACCCCCAGGTCGAGalignmentplotGSM278370-4061AT2G44060.2 cdna:known chromosome:TAIR10:2:18226319:18228151:1 gene:AT2G44060 transcript:AT2G44060.227530.034120.53.5
5'     TATTCGACCCCCAGGTCGAG         3'
o||| || |||||o|||||o
3' TTCAGTAA-CTCGGGGTTCAGCTTTAGTAAGT 5'
431Arabidopsis thalianaTTTGGATTGAAGGGAGCTCTTalignmentplotGSM278370-4061AT3G11440.1 cdna:known chromosome:TAIR10:3:3602093:3605104:1 gene:AT3G11440 transcript:AT3G11440.1211660.05126.753.5
5'     TTTGGATTGAAGGGAGCTCTT        3'
||||| ||||||||||||o
3' CTTATAACCTTACTTCCCTCGAGGTCGAAGTG 5'
432Arabidopsis thalianaGTAGTGTCGGTCGACACTGAalignmentplotGSM278370-4061AT2G07733.1 cdna:pseudogene chromosome:TAIR10:2:3470315:3471873:-1 gene:AT2G07733 transcript:AT2G07733.124130223
5'     GTAGTGTCGGTCG-ACACTGA        3'
||||||||||||| ||| | |
3' GATGCATCACAGCCAGCGTGTAAGTTGTATCG 5'
433Arabidopsis thalianaGAAGTTGCGGTGAAGCGGCTalignmentplotGSM278370-4061AT3G60280.1 cdna:known chromosome:TAIR10:3:22279664:22280675:-1 gene:AT3G60280 transcript:AT3G60280.121040.01223.5
5'     GAAGTTGCGGTGAAG-CGGCT        3'
o|||||||||oo||| ||||
3' GAACTTTCAACGCCGTTTCTGCCGTCCCTGAC 5'
434Arabidopsis thalianaCTGAAGTGTTTGGGGGGACTCalignmentplotGSM278370-4061AT3G22890.1 cdna:known chromosome:TAIR10:3:8112723:8114992:1 gene:AT3G22890 transcript:AT3G22890.124530.01333
5'     CTGAAGTGTTTGGGGGGACTC        3'
||||| ||||||o||o||||
3' ATTTTACTTCTCAAACCTCCTTGAGCCTAAGA 5'
435Arabidopsis thalianaCTGGTTTAGTCACTTTCACTGalignmentplotGSM278370-4061AT1G47128.1 cdna:known chromosome:TAIR10:1:17282825:17285670:-1 gene:AT1G47128 transcript:AT1G47128.12577012123
5'     CTGGTTTAGTCACTTTCACTG        3'
|||||||| || |o|o|||||
3' GCTAGACCAAATAAG-GGAGGTGACGAGGTTA 5'
436Arabidopsis thalianaCATCCAAGGTGTTTGTAGAAAalignmentplotGSM278370-4061AT1G09750.1 cdna:known chromosome:TAIR10:1:3157501:3159148:1 gene:AT1G09750 transcript:AT1G09750.101494037374
5'     CATCCAAGGTGTTTGTAGAAA        3'
||| |||o||o| |||||||
3' GCAAGTATGTTTCATATACATCTTCCAGTTCG 5'
437Arabidopsis thalianaAAGCTCAGGAGGGATAGCGCCalignmentplotGSM278370-4061AT5G57735.1 cdna:known chromosome:TAIR10:5:23394005:23394500:1 gene:AT5G57735 transcript:AT5G57735.124290.01663
5'     AAGCTCAGGAGGGATAGCGCC        3'
||||||||||||o|||| o |
3' GTATTTCGAGTCCTCCTTATCTTTGTTGTTTG 5'
438Arabidopsis thalianaTGCTCGATTGTCTGGTTGAGalignmentplotGSM278370-4061AT5G23820.1 cdna:known chromosome:TAIR10:5:8031268:8033020:1 gene:AT5G23820 transcript:AT5G23820.117580.0127274
5'     TGCTCGATTGTCTGGTTGAG         3'
|||||||||| || ||| |
3' CTGTACGAGCTAAC-GAACAAGTATAGCGATA 5'
439Arabidopsis thalianaCTTCTCCAACATGGAGATTCalignmentplotGSM278370-4061AT2G26500.2 cdna:known chromosome:TAIR10:2:11270218:11270874:1 gene:AT2G26500 transcript:AT2G26500.224070.05933.5
5'     CTTCTCCAACATGGAGATTC         3'
||||| ||||| |o|| |||
3' AGTCGAAGAAGTTGT-CTTCAAAGCTAAGCTT 5'
440Arabidopsis thalianaTAGAAGGGAGTGAGTTCTCGalignmentplotGSM278370-4061AT5G38660.1 cdna:known chromosome:TAIR10:5:15473109:15475552:-1 gene:AT5G38660 transcript:AT5G38660.128010.011473
5'     TAGAAGGGAGTGAGTTCTCG         3'
||||||o|||||o|| |||
3' AGGTTTCTTCCTTCACTTAA-AGCGGACAGAA 5'
441Arabidopsis thalianaTGATTGAGCCGTGTCAATATCalignmentplotGSM278370-4061AT4G00150.1 cdna:known chromosome:TAIR10:4:57199:59286:-1 gene:AT4G00150 transcript:AT4G00150.1086701561561
5'     TGATTGAGCCGTGTCAATATC        3'
|||||||||||o|o|||||||
3' GACAACTAACTCGGCGCGGTTATAGGGGACTC 5'
442Arabidopsis thalianaTTGGCATTCTGTCCACCTCCalignmentplotGSM278370-4061AT3G12120.2 cdna:known chromosome:TAIR10:3:3860445:3862880:-1 gene:AT3G12120 transcript:AT3G12120.221530.0152.53
5'     TTGGCATTCTGTCCACCTCC         3'
oo|||||||| ||||||| |
3' CCTTGGCCGTAAGA-AGGTGGACGTGGGTACA 5'
443Arabidopsis thalianaTTGAGCCGTGCCAATATCACGalignmentplotGSM278370-4061AT4G00150.1 cdna:known chromosome:TAIR10:4:57199:59286:-1 gene:AT4G00150 transcript:AT4G00150.12864011112.5
5'     TTGAGCCGTGCCAATATCACG        3'
||||||||o||||||||| |
3' AACTAACTCGGCGCGGTTATAGGGGACTCGAT 5'
444Arabidopsis thalianaTGTGTTCTCAGGTCACCCCTTalignmentplotGSM278370-4061AT2G28190.1 cdna:known chromosome:TAIR10:2:12014498:12016569:1 gene:AT2G28190 transcript:AT2G28190.124870.0223234
5'     TGTGTTCTCAGGTCACCCCTT        3'
||| |||o|||||||||| o
3' AAATACA-AAGGGTCCAGTGGGCGTACTGCCG 5'
445Arabidopsis thalianaTCATGTTATGTGATTCTTCTalignmentplotGSM278370-4061AT1G03360.1 cdna:known chromosome:TAIR10:1:824537:826358:1 gene:AT1G03360 transcript:AT1G03360.1110010.03334
5'     TCATGTTATGTGATTCTTCT         3'
||||| ||||| | | ||||
3' GTATAGTAC-ATACAGTTATAAGAAACTCAAT 5'
446Arabidopsis thalianaTCTGCATGCTCCTTGTTGATGalignmentplotGSM278370-4061AT4G05060.1 cdna:known chromosome:TAIR10:4:2590065:2592163:-1 gene:AT4G05060 transcript:AT4G05060.1210090773.5
5'     TCTGCATGCTCCTTGTTGATG        3'
|||o| | |||||||||| ||
3' TCGCAGATG-AGGAGGAACAACAACACGTTCT 5'
447Arabidopsis thalianaGGCGGCGGCAAACTCTACTGalignmentplotGSM278370-4061AT2G13360.1 cdna:known chromosome:TAIR10:2:5539240:5541358:-1 gene:AT2G13360 transcript:AT2G13360.1213060.05424
5'     GGCGGCGGCAAACTCTACTG         3'
|||o|| |||| |||o|||
3' ATCTCCGTCGACGTT-GAGGTGAAGGGTAATG 5'
448Arabidopsis thalianaTGACAGAAGAAAGAGAGCACalignmentplotGSM278370-4061AT3G57920.1 cdna:known chromosome:TAIR10:3:21444321:21446035:-1 gene:AT3G57920 transcript:AT3G57920.118550331
5'     TGACAGAAGAAAGAGAGCAC         3'
|||||||||| |||||||||
3' TCAAACTGTCTTCTCTCTCTCGTGTCGAACTT 5'
449Arabidopsis thalianaTGGCGACGGTGGTGAGGACGalignmentplotGSM278370-4061AT1G79730.1 cdna:known chromosome:TAIR10:1:30000538:30004005:-1 gene:AT1G79730 transcript:AT1G79730.1211670.05993.5
5'     TGGCGACGGTGGTGAGGACG         3'
||||o||o||||| ||o||
3' TTATACCGTTGTCACCA-TCTTGAAGTTGGCC 5'
450Arabidopsis thalianaTCGTGGCCGATCTGCTGAGGalignmentplotGSM278370-4061AT5G19780.1 cdna:known chromosome:TAIR10:5:6687074:6689171:1 gene:AT5G19780 transcript:AT5G19780.1213100.0531.54
5'     TCGTGGCCGATCTGCTGAGG         3'
| |||| |||||o| ||||o
3' TTTGAACACCAGCTAGGC-ACTCTTGTGGAGA 5'
451Arabidopsis thalianaTCGAGCACATGACATCCAGAalignmentplotGSM278370-4061AT1G67340.1 cdna:known chromosome:TAIR10:1:25230265:25231840:1 gene:AT1G67340 transcript:AT1G67340.108670.02664
5'     TCGAGCACATGACATCCAGA         3'
o|| | |||| |||||||o|
3' CCACGGC-CATGTAATGTAGGTTTTAGTGATT 5'
452Arabidopsis thalianaAGTGTAGTTGTTGCCGGAGAalignmentplotGSM278370-4061AT5G18430.1 cdna:known chromosome:TAIR10:5:6110255:6112029:-1 gene:AT5G18430 transcript:AT5G18430.112350.03224
5'     AGTGTAGTTGTTGCCGGAGA         3'
|||o||||||oo||o|| |
3' CCGTGCACGTCAACAGTGGTCTATCAACAACA 5'
453Arabidopsis thalianaTGTGTTCTCAGGTCACCCCTTalignmentplotGSM278370-4061AT3G27200.1 cdna:known chromosome:TAIR10:3:10043522:10044373:-1 gene:AT3G27200 transcript:AT3G27200.10269054544
5'    TG-TGTTCTCAGGTCACCCCTT        3'
|| |||||o|||||||| ||o
3' TTGACTACAAGGGTCCAGTGTTGAGAACATAC 5'
454Arabidopsis thalianaTGGCGACGGTGGTGAGGACGAalignmentplotGSM278370-4061AT1G29390.2 cdna:known chromosome:TAIR10:1:10286293:10288103:-1 gene:AT1G29390 transcript:AT1G29390.229370.0573.54
5'     TGGCGACGGTGGTGAGGAC-GA       3'
|||| ||o||||oo||o|| ||
3' TAATACCGATGTCACCGTTCTTGACTTAAGAC 5'
455Arabidopsis thalianaTTCTTCCGCCGCTTGGAGTCalignmentplotGSM278370-4061AT2G23670.1 cdna:known chromosome:TAIR10:2:10063155:10063863:-1 gene:AT2G23670 transcript:AT2G23670.123950.05334
5'     TTCTTCCGCCGCTTGGAGTC         3'
o|| |||||||||| |o||
3' TGGAGAG-AGGCGGCGAAGATTAGGAAAGAGG 5'
456Arabidopsis thalianaTGACAGAAGATAGAGAGCACalignmentplotGSM278370-4061AT3G49780.1 cdna:known chromosome:TAIR10:3:18465679:18466376:1 gene:AT3G49780 transcript:AT3G49780.103770.05444
5'     TGACAGAAGATAGAGAGCAC         3'
o||||||o|o|||o|| ||
3' TCTGCTTGTCTTTTGTCTTTCATGATGTCACT 5'
457Arabidopsis thalianaTTTCGTTGTCTGTTCGACCTTalignmentplotGSM278370-4061AT1G06180.1 cdna:known chromosome:TAIR10:1:1889408:1891158:1 gene:AT1G06180 transcript:AT1G06180.124030.01443
5'     TTTCGTTGTCTGTTCGACCTT        3'
|||||||||||||||| ||
3' AATTAAAGCAACAGACAAGCAGGTCCGTTAAA 5'
458Arabidopsis thalianaGCTACCGGAGCATTCCATGCalignmentplotGSM278370-4061AT3G13460.2 cdna:known chromosome:TAIR10:3:4384714:4388477:-1 gene:AT3G13460 transcript:AT3G13460.2221550.0230.754
5'     GCTACCGGAGCATTCCATGC         3'
||| | |||| ||||| |||
3' TTGTCGACGTCCTC-TAAGGAACGAGCGACTG 5'
459Arabidopsis thalianaTGACAGAAGAGAGTTAGCACalignmentplotGSM278370-4061AT2G33810.1 cdna:known chromosome:TAIR10:2:14305001:14306072:1 gene:AT2G33810 transcript:AT2G33810.127970442
5'     TGACAGAAGAGAGTTAGCAC         3'
|||||||||||||| ||||
3' TCTGACTGTCTTCTCTCATTCGTTTCGGACAA 5'
460Arabidopsis thalianaTGCCTGGCTCCCTGTATGCCalignmentplotGSM278370-4061AT1G77850.1 cdna:known chromosome:TAIR10:1:29272313:29275419:1 gene:AT1G77850 transcript:AT1G77850.10142001151150.5
5'     TGCCTGGCTCCCTGTATGCC         3'
||||||||||||||o|||||
3' TATAACGGACCGAGGGACGTACGGTCGTCCTT 5'
461Arabidopsis thalianaTCAATGCATTGAAAGTGACTAalignmentplotGSM278370-4061AT4G24230.4 cdna:known chromosome:TAIR10:4:12566944:12568767:-1 gene:AT4G24230 transcript:AT4G24230.4012690.0140.84
5'     TCAATGCATT-GAAAGTGACTA       3'
||||||||o| |||| oo||o|
3' TATTAGTTACGTGATCTTTAGTTGGTCAGGAG 5'
462Arabidopsis thalianaTCAATGCATTGAAAGTGACTAalignmentplotGSM278370-4061AT5G41170.1 cdna:known chromosome:TAIR10:5:16478486:16480584:-1 gene:AT5G41170 transcript:AT5G41170.11892092.251
5'     TCAATGCATTGAAAGTGACTA        3'
|||||||||||||||||| ||
3' AGCTAGTTACGTAACTTTCACTAATGTAGTCC 5'
463Arabidopsis thalianaGGAATCTTGATGATGCTGCATalignmentplotGSM278370-4061AT3G54990.1 cdna:known chromosome:TAIR10:3:20373718:20376522:-1 gene:AT3G54990 transcript:AT3G54990.109760331.5
5'     GGAATCTTGATGATGCTGCAT        3'
||||||o|||||||||||||
3' TTTCCCTTAGGACTACTACGACGTTGACAGAA 5'
464Arabidopsis thalianaTGAGAAGAAGAAGAAGAAAAalignmentplotGSM278370-4061AT3G48160.2 cdna:known chromosome:TAIR10:3:17783331:17786099:1 gene:AT3G48160 transcript:AT3G48160.2215400.02210.03185991.5
5'     TGAGAAGAAGAAGAAGAAAA         3'
o||||||||||||||||||
3' TCTTCTTCTTCTTCTTCTTCTTTTTCTTCTAG 5'
465Arabidopsis thalianaCCGACCCGAATACCCGAACGalignmentplotGSM278370-4061AT5G57685.1 cdna:known chromosome:TAIR10:5:23366004:23366867:-1 gene:AT5G57685 transcript:AT5G57685.126090331.5
5'     CCGACCCGAATACCCGAACG         3'
||o|||||||||||||| ||
3' ACTAGGTTGGGCTTATGGGCT-GCGTTGGCCC 5'
466Arabidopsis thalianaTACCATCTCTTGAGGAACTTGGalignmentplotGSM278370-4061AT1G07920.1 cdna:known chromosome:TAIR10:1:2454846:2457321:1 gene:AT1G07920 transcript:AT1G07920.1212610.0171.43
5'     TACCATCTCTTGAGGAACTTGG       3'
o||||| |||| |o||||||||
3' CGTAGTGGTA-AGAAGTTCTTGAACCCGAGGA 5'
467Arabidopsis thalianaTTGGACTGAAGGGAGCTCCalignmentplotGSM278370-4061AT1G53230.1 cdna:known chromosome:TAIR10:1:19849788:19851725:-1 gene:AT1G53230 transcript:AT1G53230.1211950.01443
5'     TTGGACTGAAGGGAGCTCC          3'
|||||||||||| o|o||
3' CAATTACCTGACTTCCCCTGGGGAGACACTAT 5'
468Arabidopsis thalianaTTGGACTGAAGGGAGCTCCCTalignmentplotGSM278370-4061AT1G53230.1 cdna:known chromosome:TAIR10:1:19849788:19851725:-1 gene:AT1G53230 transcript:AT1G53230.1211950.05444
5'     TTGGACTGAAGGGAGCTCCCT        3'
|||||||||||| o|o|| |
3' CAATTACCTGACTTCCCCTGGGG-AGACACTA 5'
469Arabidopsis thalianaGACGAAGAAGATGGTGATGTGATalignmentplotGSM278370-4061AT1G21380.1 cdna:known chromosome:TAIR10:1:7485636:7488713:-1 gene:AT1G21380 transcript:AT1G21380.1217430.01333.5
5'     GACGAAGAAGATGGTGATGTGAT      3'
|| ||||||||||o|||||| |
3' AAACCTCCTTCTTCTACTACTACAGGACCAAA 5'
470Arabidopsis thalianaTGGTGTCGATCGACACCAAGGalignmentplotGSM278370-4061AT3G11830.2 cdna:novel chromosome:TAIR10:3:3732628:3736377:1 gene:AT3G11830 transcript:AT3G11830.2216680.032512.54
5'     TGGTGTCGATCGACACCAAGG        3'
o||| ||| ||||||| |||o
3' AAGTGCCAAAGC-AGCTGTGATTCTTACTCCG 5'
471Arabidopsis thalianaAGAGAAACCCAACAGCATCATalignmentplotGSM278370-4061AT1G69160.1 cdna:known chromosome:TAIR10:1:26000214:26001588:1 gene:AT1G69160 transcript:AT1G69160.1011810.0218184
5'     AGAGAAACCCAACAGCATCAT        3'
o|||||||||| |o||| ||
3' TTAGGTTCTTTGGGTTTTTGTA-TATTGAATA 5'
472Arabidopsis thalianaTCGGACCAGGCTTCATTCCCCalignmentplotGSM278370-4061AT1G30490.1 cdna:known chromosome:TAIR10:1:10796135:10800961:-1 gene:AT1G30490 transcript:AT1G30490.1280602311.52.5
5'     TCGGACCAGGCTTCATTCCCC        3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5'
473Arabidopsis thalianaTCGGACCAGGCTTCATCCCCCalignmentplotGSM278370-4061AT1G30490.1 cdna:known chromosome:TAIR10:1:10796135:10800961:-1 gene:AT1G30490 transcript:AT1G30490.1280602311.52.5
5'     TCGGACCAGGCTTCATCCCCC        3'
o||||||||||||||||||
3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAGAC 5'
474Arabidopsis thalianaAAACGACGTCGTTTCGTTCTalignmentplotGSM278370-4061AT3G24500.1 cdna:known chromosome:TAIR10:3:8918679:8919308:1 gene:AT3G24500 transcript:AT3G24500.125300.04423.5
5'     AAACGACGTCGTTTCGTTCT         3'
|||||||o|||||| o|o |
3' TCTATTTGCTGTAGCAAATTAGTAAAGGGTTA 5'
475Arabidopsis thalianaTGAAAGTGACTACATCGGGGTalignmentplotGSM278370-4061AT3G14067.1 cdna:known chromosome:TAIR10:3:4658198:4660784:-1 gene:AT3G14067 transcript:AT3G14067.1217280.03224
5'     TGAAAGTGACTACATCGGGGT        3'
|| | |||||o| ||||||o|
3' AACGACGTCCACTGGT-TAGCCCTACTCGAAA 5'
476Arabidopsis thalianaGAGGAGGAGGAGCACCACCGTalignmentplotGSM278370-4061AT3G56340.1 cdna:known chromosome:TAIR10:3:20892129:20893443:-1 gene:AT3G56340 transcript:AT3G56340.124730993
5'     GAGGAGGAGGAGCACCACCGT        3'
||| || |||||||||||||
3' GCTCCTCGTCGTCCTCGTGGTGGCCGTCCCGC 5'
477Arabidopsis thalianaTACCATCTCTTGAGGAACTTGGalignmentplotGSM278370-4061AT1G07930.2 cdna:known chromosome:TAIR10:1:2458244:2460790:1 gene:AT1G07930 transcript:AT1G07930.2210420.0471.44
5'     TACCATCTCTTGAGGAACTTGG       3'
o||||| |||| |o||| ||||
3' CGTAGTGGTA-AGAAGTTCTTAAACCCGAGGA 5'
478Arabidopsis thalianaTGAAAGTGACTACATCGGGGTalignmentplotGSM278370-4061AT1G63230.1 cdna:known chromosome:TAIR10:1:23450654:23452311:1 gene:AT1G63230 transcript:AT1G63230.129290.02223
5'     TGAAAGTGACTACATCGGGGT        3'
||||||| || |||||o||o|
3' CGTGACTTTCAATGTTGTAGTCCTAACTAAAC 5'
479Arabidopsis thalianaTGACAGAAGAAAGAGAGCACalignmentplotGSM278370-4061AT1G69170.1 cdna:known chromosome:TAIR10:1:26005068:26007263:1 gene:AT1G69170 transcript:AT1G69170.1213070661
5'     TGACAGAAGAAAGAGAGCAC         3'
|||||||||| |||||||||
3' CTCGACTGTCTTCTCTCTCTCGTGCTCATCTC 5'
480Arabidopsis thalianaTCGGACCAGGCTTCATTCCCCalignmentplotGSM278370-4061AT2G34710.1 cdna:known chromosome:TAIR10:2:14639323:14644273:-1 gene:AT2G34710 transcript:AT2G34710.1288102816.52.5
5'     TCGGACCAGGCTTCATTCCCC        3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5'
481Arabidopsis thalianaTCGGACCAGGCTTCATCCCCCalignmentplotGSM278370-4061AT2G34710.1 cdna:known chromosome:TAIR10:2:14639323:14644273:-1 gene:AT2G34710 transcript:AT2G34710.1288102816.52.5
5'     TCGGACCAGGCTTCATCCCCC        3'
o||||||||||||||||||
3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAGAC 5'
482Arabidopsis thalianaTCAATGCATTGAAAGTGACTAalignmentplotGSM278370-4061AT4G24230.6 cdna:known chromosome:TAIR10:4:12566935:12568754:-1 gene:AT4G24230 transcript:AT4G24230.6012550.0340.84
5'     TCAATGCATT-GAAAGTGACTA       3'
||||||||o| |||| oo||o|
3' TATTAGTTACGTGATCTTTAGTTGGTCAGGAG 5'
483Arabidopsis thalianaGAGAAGATGAAGCTGTTCTGalignmentplotGSM278370-4061AT3G56950.2 cdna:known chromosome:TAIR10:3:21078297:21079856:-1 gene:AT3G56950 transcript:AT3G56950.204660.011263.5
5'     GAGAAGATGAAGCTGTTCTG         3'
|||||||||||o|||o| o
3' CTGCCTCTTCTACTTTGACGACTTCGGTGGCC 5'
484Arabidopsis thalianaTCGGACCAGGCTTCATTCCCCalignmentplotGSM278370-4061AT3G48610.1 cdna:known chromosome:TAIR10:3:18011545:18014082:-1 gene:AT3G48610 transcript:AT3G48610.1216210.01223.5
5'    TCGG-ACCAGGCTTCATTCCCC        3'
|||| ||||o|||||||| ||
3' AATAGCCGTGGTTCGAAGTAACGGAGAAATGA 5'
485Arabidopsis thalianaACTCGACCACGAAGTCGAGTalignmentplotGSM278370-4061AT4G01320.1 cdna:known chromosome:TAIR10:4:545796:549261:1 gene:AT4G01320 transcript:AT4G01320.10506029293
5'     ACTCGACCACGAA-GTCGAGT        3'
|||||| |||||| || ||||
3' GCTCTGAGCTAGTGCTTTCAACTCATGTTTCT 5'
486Arabidopsis thalianaCTATCATCATCATCCTCGTAAalignmentplotGSM278370-4061AT3G29075.1 cdna:known chromosome:TAIR10:3:11051489:11052694:-1 gene:AT3G29075 transcript:AT3G29075.127840.022043
5'     CTATCATCATCATCCTCGTAA        3'
| |||||||||||| | ||||
3' AAGAG-TAGTAGTAGTAGTAACATTAATACGA 5'
487Arabidopsis thalianaTCATCTTCATCATCATCGTCAalignmentplotGSM278370-4061AT2G31210.1 cdna:known chromosome:TAIR10:2:13296143:13298277:1 gene:AT2G31210 transcript:AT2G31210.1111610.0240.4444443
5'     TCATCTTCATCATCATCGTCA        3'
|||||||||| |o||| o|||
3' TAGTAGTAGAAGTAATGGTACTAGTAGGTTCA 5'
488Arabidopsis thalianaTGAGAAGACTCTGAAGGTGTGalignmentplotGSM278370-4061AT1G75160.1 cdna:known chromosome:TAIR10:1:28209437:28211804:1 gene:AT1G75160 transcript:AT1G75160.109090554
5'     TGAGAAGACTCTGAAGGTGTG        3'
|||||| | ||||| |||||
3' CGAAACTCTTAT-AGACTGCCACAAAGATGAA 5'
489Arabidopsis thalianaTTCGCTTGCAGAGAGAAATCACalignmentplotGSM278370-4061AT2G39675.1 cdna:known chromosome:TAIR10:2:16537288:16538277:-1 gene:AT2G39675 transcript:AT2G39675.10379056561.5
5'     TTCGCTTGCAGAGAGAAATCAC       3'
|||||||| |||||o|||||||
3' AGATAAGCGAACATCTCTTTTTAGTGTTGTTT 5'
490Arabidopsis thalianaCTGGGTTGTGATGTTCTGCAalignmentplotGSM278370-4061AT3G59920.1 cdna:known chromosome:TAIR10:3:22134999:22138457:1 gene:AT3G59920 transcript:AT3G59920.1211210333
5'     CTGGGTTGTGATGTTCTGCA         3'
||||| |o||||| o|||||
3' CAAAGACCCCATACTACTGGACGTGACTCACT 5'
491Arabidopsis thalianaCGGCTCTGATACCAATTGATGalignmentplotGSM278370-4061AT2G40000.1 cdna:known chromosome:TAIR10:2:16700510:16702028:-1 gene:AT2G40000 transcript:AT2G40000.122970.04444
5'     CGGCTCTGATACCAATTGATG        3'
|||||||||| | ||||| |
3' CTTAGCCGAGACTACAGGTAACTCCTTTTAGT 5'
492Arabidopsis thalianaAAGAGAGAGGGTTTAAGGCTTalignmentplotGSM278370-4061AT5G02600.1 cdna:known chromosome:TAIR10:5:585101:586897:-1 gene:AT5G02600 transcript:AT5G02600.122210.0552.53
5'     AAGAGAGAGGGTTTAAGGCTT        3'
|||| |||||| |||||| ||
3' CTGCTTCT-TCTCCCTAATTCCAAACCCCTTC 5'
493Arabidopsis thalianaTGCCTGGCTCCCTGTATGCCalignmentplotGSM278370-4061AT4G30080.1 cdna:known chromosome:TAIR10:4:14703201:14706336:-1 gene:AT4G30080 transcript:AT4G30080.1115190661.5
5'     TGCCTGGCTCCCTGTATGCC         3'
|||||||||||||||| o||
3' TAATACGGACCGAGGGACATTTGGGTGCCCTT 5'
494Arabidopsis thalianaGAGAGGAGAGAGTCTTTGTTalignmentplotGSM278370-4061AT4G22670.1 cdna:known chromosome:TAIR10:4:11918080:11920910:1 gene:AT4G22670 transcript:AT4G22670.1216100.0212122.5
5'     GAGAGGAGAGAGTCTTTGTT         3'
o||||o|o||||| ||||||
3' TTGCTTCTCTTTTCTCA-AAACAAGGACAATT 5'
495Glycine maxCCGGAAGAGGAAAATTAAGCAAalignmentplotGSM848963_Cot25_unique_seq_countGLYMA12G12210.5 cdna:novel chromosome:V1.0:Gm12:10353968:10359433:-1 gene:GLYMA12G12210 transcript:GLYMA12G12210.5211430.04161.777783.5
5'     CCGGAAGAGGAA-AATTAAGCAA      3'
|o||||||||| |||||||| |
3' TACTCGTCTTCTCCTTCTTAATTCGATAACAA 5'
496Glycine maxTTGACAGAAGATAGAGAGCACalignmentplotGSM848963_Cot25_unique_seq_countGLYMA02G13371.2 cdna:novel chromosome:V1.0:Gm02:11670695:11677264:-1 gene:GLYMA02G13371 transcript:GLYMA02G13371.2213990367.21.5
5'     TTGACAGAAGATAGAGAGCAC        3'
o|||||||||| |||||||||
3' ACTAGACTGTCTTCTCTCTCTCGTGTCGAACT 5'
497Glycine maxACGGACACCGAACACGACACGGACalignmentplotGSM848963_Cot25_unique_seq_countGLYMA17G05840.3 cdna:known chromosome:V1.0:Gm17:4116203:4118256:-1 gene:GLYMA17G05840 transcript:GLYMA17G05840.321309026262
5'     ACGGACACCGAACACGACACGGAC     3'
|||o|||||| |||||||||o|||
3' GCTGTGCTTGTGGCCTGTGCTGTGTCTGTGAA 5'
498Glycine maxTGAGAGAAAGCCATGACTTACalignmentplotGSM848963_Cot25_unique_seq_countGLYMA08G27941.2 cdna:novel chromosome:V1.0:Gm08:22208426:22211736:-1 gene:GLYMA08G27941 transcript:GLYMA08G27941.2019001891
5'     TGAGAGAAAGCCATGACTTAC        3'
| |||||||||||||||||||
3' CTCTAGTCTCTTTCGGTACTGAATGTTTGTGT 5'
499Glycine maxTTTGGATTGAAGGGAGCTCalignmentplotGSM848963_Cot25_unique_seq_countGLYMA06G47000.2 cdna:novel chromosome:V1.0:Gm06:49543622:49548924:-1 gene:GLYMA06G47000 transcript:GLYMA06G47000.201343060151
5'     TTTGGATTGAAGGGAGCTC          3'
|||||| ||||||||||||
3' CCTTAAACCTCACTTCCCTCGAGACTGAAGTG 5'
500Glycine maxCGGACCAGGCTTCATTCCCGTalignmentplotGSM848963_Cot25_unique_seq_countGLYMA01G40900.3 cdna:novel chromosome:V1.0:Gm01:52553730:52560423:-1 gene:GLYMA01G40900 transcript:GLYMA01G40900.324260.0520103.5
5'     CGGACCAGGCTTCATTCCCGT        3'
| ||| ||||||||||| |o|
3' TCACGACTGTTCCGAAGTAAGAGTAGCATCTT 5'
501Glycine maxTGACAGAAGAGAGTGAGCACalignmentplotGSM848963_Cot25_unique_seq_countGLYMA02G13371.2 cdna:novel chromosome:V1.0:Gm02:11670695:11677264:-1 gene:GLYMA02G13371 transcript:GLYMA02G13371.22139803061
5'     TGACAGAAGAGAGTGAGCAC         3'
||||||||||||| ||||||
3' CTAGACTGTCTTCTCTCTCTCGTGTCGAACTA 5'
502Glycine maxTCAAAGGGAGTTGTAGGGGAAalignmentplotGSM848963_Cot25_unique_seq_countGLYMA07G14490.2 cdna:novel chromosome:V1.0:Gm07:13937870:13941713:-1 gene:GLYMA07G14490 transcript:GLYMA07G14490.21296030154
5'     TCAAAGGGAG-TTGTAGGGGAA       3'
| |||||||| |||| | ||||
3' TCTCACTTTCCCTCCAACAACGCCTTGAACGC 5'
503Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848963_Cot25_unique_seq_countGLYMA14G10090.1 cdna:novel chromosome:V1.0:Gm14:8190765:8195025:-1 gene:GLYMA14G10090 transcript:GLYMA14G10090.12110404916.33331
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' CGGAAGGTGTCCGAAAGAACTTGCTACCGCAG 5'
504Glycine maxTTGACAGAAGATAGAGAGCACalignmentplotGSM848963_Cot25_unique_seq_countGLYMA0005S50.1 cdna:novel chromosome:V1.0:Gm05:16185:21667:1 gene:GLYMA0005S50 transcript:GLYMA0005S50.101912060152
5'     TTGACAGAAGATAGAGAGCAC        3'
|||||||||| |||||||||
3' ACTCTACTGTCTTCTCTCTCTCGTGTTGTTCT 5'
505Glycine maxTCATCATCATCATCTTCTTCTalignmentplotGSM848963_Cot25_unique_seq_countGLYMA03G32020.3 cdna:novel chromosome:V1.0:Gm03:39830110:39837209:-1 gene:GLYMA03G32020 transcript:GLYMA03G32020.32824048480
5'     TCATCATCATCATCTTCTTCT        3'
|||||||||||||||||||||
3' AAGGAGTAGTAGTAGTAGAAGAAGAACGACAC 5'
506Glycine maxTTCCACAGCTTTCTTGAACTGalignmentplotGSM848963_Cot25_unique_seq_countGLYMA02G02942.2 cdna:novel chromosome:V1.0:Gm02:2254118:2257679:1 gene:GLYMA02G02942 transcript:GLYMA02G02942.225490.0373.53
5'    TTCCACA-GCTTTCTTGAACTG        3'
o||| || ||||||o|||||||
3' AACGAGGCGTCCGAAAGGACTTGACAAAAGAG 5'
507Glycine maxTCGGACCAGGCTTCATTCCalignmentplotGSM848963_Cot25_unique_seq_countGLYMA12G08080.1 cdna:novel chromosome:V1.0:Gm12:5801673:5808673:1 gene:GLYMA12G08080 transcript:GLYMA12G08080.111424060301
5'     TCGGACCAGGCTTCATTCC          3'
o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTCCGTAGAC 5'
508Glycine maxTCGGACCAGGCTTCATTCCCalignmentplotGSM848963_Cot25_unique_seq_countGLYMA12G08080.1 cdna:novel chromosome:V1.0:Gm12:5801673:5808673:1 gene:GLYMA12G08080 transcript:GLYMA12G08080.111424060301.5
5'     TCGGACCAGGCTTCATTCCC         3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAGA 5'
509Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848963_Cot25_unique_seq_countGLYMA19G37740.1 cdna:novel chromosome:V1.0:Gm19:44838730:44842363:1 gene:GLYMA19G37740 transcript:GLYMA19G37740.119430307.51
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' ATCAAGGTGTCCGAAAGAACTTGCCAAAGAAG 5'
510Glycine maxTTGACAGAAGATAGAGAGCACalignmentplotGSM848963_Cot25_unique_seq_countGLYMA11G36980.3 cdna:known chromosome:V1.0:Gm11:38244535:38250746:1 gene:GLYMA11G36980 transcript:GLYMA11G36980.313527060151
5'     TTGACAGAAGATAGAGAGCAC        3'
||||||||||| |||||||||
3' AAGCAACTGTCTTCTCTCTCTCGTGCCAATTG 5'
511Glycine maxTTTGGATTGAAGGGAGCTCTalignmentplotGSM848963_Cot25_unique_seq_countGLYMA19G40720.1 cdna:novel chromosome:V1.0:Gm19:47059021:47063814:1 gene:GLYMA19G40720 transcript:GLYMA19G40720.1226080.03632.5
5'     TTTGGATTGAAGGGAGCTCT         3'
||||||o||| |||| ||||
3' ACGGAAACCTGACTCCCCTGGAGAACGTGGTC 5'
512Glycine maxTGACAGAAGAGAGTGAGCACalignmentplotGSM848963_Cot25_unique_seq_countGLYMA0005S50.1 cdna:novel chromosome:V1.0:Gm05:16185:21667:1 gene:GLYMA0005S50 transcript:GLYMA0005S50.1219110153.751
5'     TGACAGAAGAGAGTGAGCAC         3'
||||||||||||| ||||||
3' CTCTACTGTCTTCTCTCTCTCGTGTTGTTCTC 5'
513Glycine maxTGAAGCTGCCAGCATGATCTalignmentplotGSM848963_Cot25_unique_seq_countGLYMA13G29320.1 cdna:novel chromosome:V1.0:Gm13:32246000:32253054:1 gene:GLYMA13G29320 transcript:GLYMA13G29320.1033590.0160153
5'     TGAAGCTGCCAGCATGATCT         3'
||||||||||| ||||||
3' TTTATGTTCGACGGTCGGACTAGAGTGTCCCA 5'
514Glycine maxTGAAGCTGCCAGCATGATCTalignmentplotGSM848963_Cot25_unique_seq_countGLYMA11G31940.2 cdna:novel chromosome:V1.0:Gm11:33249980:33257973:-1 gene:GLYMA11G31940 transcript:GLYMA11G31940.2028020.0260303
5'     TGAAGCTGCCAGCATGATCT         3'
||||||||||| ||||||
3' CTTGTGTTCGACGGTCGGACTAGATTCTCCCA 5'
515Glycine maxTGAAGCTGCCAGCATGATCTalignmentplotGSM848963_Cot25_unique_seq_countGLYMA08G23930.2 cdna:known chromosome:V1.0:Gm08:18227872:18233848:1 gene:GLYMA08G23930 transcript:GLYMA08G23930.224390.042873
5'     TGAAGCTGCCAGCATGATCT         3'
|||||||| ||||| o|o||
3' GTCTACTTCGAC-GTCGTCTTGGACTACAAAA 5'
516Glycine maxTGACAGAAGAGAGTGAGCACalignmentplotGSM848963_Cot25_unique_seq_countGLYMA11G36980.3 cdna:known chromosome:V1.0:Gm11:38244535:38250746:1 gene:GLYMA11G36980 transcript:GLYMA11G36980.3235260307.51
5'     TGACAGAAGAGAGTGAGCAC         3'
||||||||||||| ||||||
3' AGCAACTGTCTTCTCTCTCTCGTGCCAATTGT 5'
517Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848963_Cot25_unique_seq_countGLYMA03G35010.3 cdna:novel chromosome:V1.0:Gm03:42329293:42333139:1 gene:GLYMA03G35010 transcript:GLYMA03G35010.3211910307.51
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' ATCAAGGTGTCCGAAAGAACTTGCCAAAGAAG 5'
518Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848963_Cot25_unique_seq_countGLYMA13G16924.2 cdna:novel chromosome:V1.0:Gm13:20777152:20779829:-1 gene:GLYMA13G16924 transcript:GLYMA13G16924.207690.0160121
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCTAAAAAGG 5'
519Glycine maxCTTGTTTGTGGTGATGTCTalignmentplotGSM848963_Cot25_unique_seq_countGLYMA08G22920.2 cdna:novel chromosome:V1.0:Gm08:17432371:17433466:1 gene:GLYMA08G22920 transcript:GLYMA08G22920.21280013132.5
5'     CTTGTTTGTGGTGATGTCT          3'
||||||o|o||o|| ||||
3' GCCGGAACAAGCGCCGCT-CAGAGAACTCCAT 5'
520Glycine maxCAGCCAAGGATGACTTGCCGalignmentplotGSM848963_Cot25_unique_seq_countGLYMA09G07960.4 cdna:known chromosome:V1.0:Gm09:6957611:6961791:1 gene:GLYMA09G07960 transcript:GLYMA09G07960.4211400.04174.253
5'     CAGCCAAGGATGACTTGCCG         3'
|||||||||||| |||||
3' CTGATTCGGTTCCTACTAAACGGACTGGCCAC 5'
521Glycine maxTGAAGCTGCCAGCATGATCTalignmentplotGSM848963_Cot25_unique_seq_countGLYMA02G40650.2 cdna:novel chromosome:V1.0:Gm02:45888235:45899367:-1 gene:GLYMA02G40650 transcript:GLYMA02G40650.2029420.0160153
5'     TGAAGCTGCCAGCATGATCT         3'
||||||||||| ||||||
3' CTTATGTTCGACGGTCGGACTAGATTCTCCCA 5'
522Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848963_Cot25_unique_seq_countGLYMA14G10100.2 cdna:novel chromosome:V1.0:Gm14:8199978:8204920:-1 gene:GLYMA14G10100 transcript:GLYMA14G10100.22114704013.33331
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' CGGAAGGTGTCCGAAAGAACTTGCTACCGCAG 5'
523Glycine maxTGCCTGGCTCCCTGTATGCCalignmentplotGSM848963_Cot25_unique_seq_countGLYMA10G35481.1 cdna:novel chromosome:V1.0:Gm10:43704337:43707929:1 gene:GLYMA10G35481 transcript:GLYMA10G35481.121609060150
5'     TGCCTGGCTCCCTGTATGCC         3'
||||||||||||||||||||
3' TCGTACGGACCGAGGGACATACGGAGGTCTTG 5'
524Glycine maxTCGGACCAGGCTTCATTCCalignmentplotGSM848963_Cot25_unique_seq_countGLYMA05G30000.1 cdna:novel chromosome:V1.0:Gm05:35421769:35428492:1 gene:GLYMA05G30000 transcript:GLYMA05G30000.121080060121
5'     TCGGACCAGGCTTCATTCC          3'
o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAGAC 5'
525Glycine maxTCGGACCAGGCTTCATTCCCalignmentplotGSM848963_Cot25_unique_seq_countGLYMA05G30000.1 cdna:novel chromosome:V1.0:Gm05:35421769:35428492:1 gene:GLYMA05G30000 transcript:GLYMA05G30000.121080060121.5
5'     TCGGACCAGGCTTCATTCCC         3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5'
526Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848963_Cot25_unique_seq_countGLYMA16G00971.4 cdna:novel chromosome:V1.0:Gm16:636293:639481:-1 gene:GLYMA16G00971 transcript:GLYMA16G00971.40955060121
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCCAAAGACG 5'
527Glycine maxTGTGTTCTCAGGTCGCCCCTalignmentplotGSM848963_Cot25_unique_seq_countGLYMA03G40280.3 cdna:known chromosome:V1.0:Gm03:46076955:46080391:1 gene:GLYMA03G40280 transcript:GLYMA03G40280.321560.0226132.5
5'     TGTGTTCTCAGGTCGCCCCT         3'
|||| ||||||| |o|||||
3' AGTTACACTAGAGTCCCGTGGGGAATCTGTCT 5'
528Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848963_Cot25_unique_seq_countGLYMA01G44471.1 cdna:known chromosome:V1.0:Gm01:55141915:55148004:-1 gene:GLYMA01G44471 transcript:GLYMA01G44471.12835060121
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' ACTAAGGTGTCCGAAAGAACTTGCCAACGCCG 5'
529Glycine maxTCGGACCAGGCTTCATTCCalignmentplotGSM848963_Cot25_unique_seq_countGLYMA09G02750.1 cdna:novel chromosome:V1.0:Gm09:1901637:1907522:-1 gene:GLYMA09G02750 transcript:GLYMA09G02750.12968060121
5'     TCGGACCAGGCTTCATTCC          3'
o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAGAC 5'
530Glycine maxTCGGACCAGGCTTCATTCCCalignmentplotGSM848963_Cot25_unique_seq_countGLYMA09G02750.1 cdna:novel chromosome:V1.0:Gm09:1901637:1907522:-1 gene:GLYMA09G02750 transcript:GLYMA09G02750.12968060121.5
5'     TCGGACCAGGCTTCATTCCC         3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5'
531Glycine maxTTGAGCCGTGCCAATATCAalignmentplotGSM848963_Cot25_unique_seq_countGLYMA03G03760.2 cdna:novel chromosome:V1.0:Gm03:3581308:3584468:-1 gene:GLYMA03G03760 transcript:GLYMA03G03760.201642060201.5
5'     TTGAGCCGTGCCAATATCA          3'
||||||||o|||||||||
3' CACTAACTCGGCGCGGTTATAGGGAACGCGTA 5'
532Glycine maxTCGGACCAGGCTTCATTCCalignmentplotGSM848963_Cot25_unique_seq_countGLYMA08G21620.3 cdna:novel chromosome:V1.0:Gm08:16441681:16450105:-1 gene:GLYMA08G21620 transcript:GLYMA08G21620.3286606060.5
5'     TCGGACCAGGCTTCATTCC          3'
o||||||||||||||||||
3' CTTAGGCCTGGTCCGAAGTAAGGTCCGTAAAC 5'
533Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848963_Cot25_unique_seq_countGLYMA11G01060.1 cdna:novel chromosome:V1.0:Gm11:573836:577693:1 gene:GLYMA11G01060 transcript:GLYMA11G01060.12486060121
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' ACTAAGGTGTCCGAAAGAACTTGCCAACGCCG 5'
534Glycine maxTGATTGAGCCGTGCCAATATalignmentplotGSM848963_Cot25_unique_seq_countGLYMA03G03760.2 cdna:novel chromosome:V1.0:Gm03:3581308:3584468:-1 gene:GLYMA03G03760 transcript:GLYMA03G03760.22164505016.66670.5
5'     TGATTGAGCCGTGCCAATAT         3'
|||||||||||o||||||||
3' GACCACTAACTCGGCGCGGTTATAGGGAACGC 5'
535Glycine maxTGCCTGGCTCCCTGTATGCCalignmentplotGSM848963_Cot25_unique_seq_countGLYMA12G08110.1 cdna:novel chromosome:V1.0:Gm12:5840398:5844362:-1 gene:GLYMA12G08110 transcript:GLYMA12G08110.121640060151
5'     TGCCTGGCTCCCTGTATGCC         3'
||||||||||||||||| ||
3' TCGTACGGACCGAGGGACATAGGGACGTCCTC 5'
536Glycine maxTCGGACCAGGCTTCATTCCalignmentplotGSM848963_Cot25_unique_seq_countGLYMA15G13640.1 cdna:novel chromosome:V1.0:Gm15:10250637:10256541:-1 gene:GLYMA15G13640 transcript:GLYMA15G13640.1294506061
5'     TCGGACCAGGCTTCATTCC          3'
o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAGAC 5'
537Glycine maxTCGGACCAGGCTTCATTCCCalignmentplotGSM848963_Cot25_unique_seq_countGLYMA15G13640.1 cdna:novel chromosome:V1.0:Gm15:10250637:10256541:-1 gene:GLYMA15G13640 transcript:GLYMA15G13640.129450.026061.5
5'     TCGGACCAGGCTTCATTCCC         3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5'
538Glycine maxTTGACAGAAGATAGAGAGCACalignmentplotGSM848963_Cot25_unique_seq_countGLYMA19G32800.1 cdna:novel chromosome:V1.0:Gm19:40502386:40507238:-1 gene:GLYMA19G32800 transcript:GLYMA19G32800.101139030151
5'     TTGACAGAAGATAGAGAGCAC        3'
||||||||||| |||||||||
3' ACTAAACTGTCTTCTCTCTCTCGTGTCGAGCA 5'
539Glycine maxTTGAGCCGTGCCAATATCAalignmentplotGSM848963_Cot25_unique_seq_countGLYMA14G17863.1 cdna:novel chromosome:V1.0:Gm14:19931432:19937024:-1 gene:GLYMA14G17863 transcript:GLYMA14G17863.103050.05237.666674
5'     TTGAGCCGTGCCAATATCA          3'
|| ||||o|| |||o |||
3' TTACAA-TCGGTACAGTTGAAGTAGCATTAGG 5'
540Glycine maxTGCCTGGCTCCCTGTATGCCalignmentplotGSM848963_Cot25_unique_seq_countGLYMA12G29720.1 cdna:novel chromosome:V1.0:Gm12:33175269:33178907:-1 gene:GLYMA12G29720 transcript:GLYMA12G29720.101654052520
5'     TGCCTGGCTCCCTGTATGCC         3'
||||||||||||||||||||
3' TCGTACGGACCGAGGGACATACGGACGTCCTC 5'
541Glycine maxTGATTGAGCCGTGCCAATATalignmentplotGSM848963_Cot25_unique_seq_countGLYMA01G18040.1 cdna:novel chromosome:V1.0:Gm01:22484145:22487576:-1 gene:GLYMA01G18040 transcript:GLYMA01G18040.111771060300.5
5'     TGATTGAGCCGTGCCAATAT         3'
|||||||||||o||||||||
3' AACCACTAACTCGGCGCGGTTATAGGGTACGC 5'
542Glycine maxTTTGGATTGAAGGGAGCTCTAalignmentplotGSM848963_Cot25_unique_seq_countGLYMA05G26500.2 cdna:novel chromosome:V1.0:Gm05:32448836:32452781:-1 gene:GLYMA05G26500 transcript:GLYMA05G26500.203470.0230154
5'    TTTGGATT-GAAGGGAGCTCTA        3'
||||| || |||||o| |||o|
3' CATAAACCAAAGCTTCCTTGGAGGTCGAATCC 5'
543Glycine maxTGCCTGGCTCCCTGTATGCCalignmentplotGSM848963_Cot25_unique_seq_countGLYMA14G33730.1 cdna:novel chromosome:V1.0:Gm14:41889885:41894154:1 gene:GLYMA14G33730 transcript:GLYMA14G33730.101184060300.5
5'     TGCCTGGCTCCCTGTATGCC         3'
||||||||||||||o|||||
3' TAGTACGGACCGAGGGACGTACGGTCGTCCTT 5'
544Glycine maxTGCCTGGCTCCCTGTATGCCalignmentplotGSM848963_Cot25_unique_seq_countGLYMA13G20382.2 cdna:novel chromosome:V1.0:Gm13:23822784:23826849:-1 gene:GLYMA13G20382 transcript:GLYMA13G20382.211754060150.5
5'     TGCCTGGCTCCCTGTATGCC         3'
||||||||||||||o|||||
3' TCGTACGGACCGAGGGACGTACGGTCGTCCTC 5'
545Glycine maxTGATTGAGCCGTGCCAATATalignmentplotGSM848963_Cot25_unique_seq_countGLYMA01G33270.1 cdna:novel chromosome:V1.0:Gm01:45164207:45167759:-1 gene:GLYMA01G33270 transcript:GLYMA01G33270.12121105016.66670.5
5'     TGATTGAGCCGTGCCAATAT         3'
|||||||||||o||||||||
3' GACCACTAACTCGGCGCGGTTATAGGGAACGC 5'
546Glycine maxTTGAGCCGTGCCAATATCAalignmentplotGSM848963_Cot25_unique_seq_countGLYMA01G33270.1 cdna:novel chromosome:V1.0:Gm01:45164207:45167759:-1 gene:GLYMA01G33270 transcript:GLYMA01G33270.1212080.0160201.5
5'     TTGAGCCGTGCCAATATCA          3'
||||||||o|||||||||
3' CACTAACTCGGCGCGGTTATAGGGAACGCGTA 5'
547Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848963_Cot25_unique_seq_countGLYMA17G35100.2 cdna:novel chromosome:V1.0:Gm17:39088426:39092940:1 gene:GLYMA17G35100 transcript:GLYMA17G35100.22115904916.33331
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' CGGAAGGTGTCCGAAAGAACTTGCTACCGCAG 5'
548Glycine maxTTGAGCCGTGCCAATATCAalignmentplotGSM848963_Cot25_unique_seq_countGLYMA01G18040.1 cdna:novel chromosome:V1.0:Gm01:22484145:22487576:-1 gene:GLYMA01G18040 transcript:GLYMA01G18040.1217680.0148241.5
5'     TTGAGCCGTGCCAATATCA          3'
||||||||o|||||||||
3' CACTAACTCGGCGCGGTTATAGGGTACGCGCT 5'
549Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848963_Cot25_unique_seq_countGLYMA01G34650.2 cdna:novel chromosome:V1.0:Gm01:47081811:47085604:1 gene:GLYMA01G34650 transcript:GLYMA01G34650.22793030101
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' ACAAAGGTGTCCGAAAGAACTTGCTAAAGCTG 5'
550Glycine maxTGAGCCAAGGATGACTTGCCGGTalignmentplotGSM848963_Cot25_unique_seq_countGLYMA08G06390.1 cdna:novel chromosome:V1.0:Gm08:4544275:4550234:1 gene:GLYMA08G06390 transcript:GLYMA08G06390.1211370.05215.254
5'     TGAGCCAAGGATGACTTGCCGGT      3'
oo|||||||| | |||||||o|o
3' AGGAGTTCGGTTCCCA-TGAACGGTCGTTTGT 5'
551Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848963_Cot25_unique_seq_countGLYMA01G35145.1 cdna:novel chromosome:V1.0:Gm01:47696214:47700220:1 gene:GLYMA01G35145 transcript:GLYMA01G35145.11556060301
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' ACTAAGGTGTCCGAAAGAACTTGCCATTGCGG 5'
552Glycine maxTGCCTGGCTCCCTGTATGCCalignmentplotGSM848963_Cot25_unique_seq_countGLYMA04G43350.1 cdna:novel chromosome:V1.0:Gm04:48947065:48951466:1 gene:GLYMA04G43350 transcript:GLYMA04G43350.111540030300.5
5'     TGCCTGGCTCCCTGTATGCC         3'
||||||||||||||o|||||
3' TAGTACGGACCGAGGGACGTACGGTCGTCCTT 5'
553Glycine maxTGAAGCTGCCAGCATGATCTGAalignmentplotGSM848963_Cot25_unique_seq_countGLYMA14G38940.1 cdna:novel chromosome:V1.0:Gm14:48094947:48103242:-1 gene:GLYMA14G38940 transcript:GLYMA14G38940.1229430.0553293.5
5'     TGAAGCTGCCAGCATGATCTGA       3'
||||||||||| ||||||o|
3' CTTATGTTCGACGGTCGGACTAGATTCTCCCA 5'
554Glycine maxTTGACAGAAGATAGAGAGCACalignmentplotGSM848963_Cot25_unique_seq_countGLYMA01G08056.2 cdna:novel chromosome:V1.0:Gm01:9051047:9057050:-1 gene:GLYMA01G08056 transcript:GLYMA01G08056.2212850367.21.5
5'     TTGACAGAAGATAGAGAGCAC        3'
o|||||||||| |||||||||
3' ACTAGACTGTCTTCTCTCTCTCGTGTCGAACT 5'
555Glycine maxTCAAAGGGAGTTGTAGGGGAAalignmentplotGSM848963_Cot25_unique_seq_countGLYMA13G09530.1 cdna:known chromosome:V1.0:Gm13:10956703:10963280:-1 gene:GLYMA13G09530 transcript:GLYMA13G09530.123690.0330153.5
5'     TCAAAGGGAGTTGTAGGGGAA        3'
|||||||||||| ||o|||
3' ATGCCGTTTCCCTCAACTTCTCCTAGAAGTTT 5'
556Glycine maxCAAAAGAGCTTATGGCTTGTAalignmentplotGSM848963_Cot25_unique_seq_countGLYMA06G18120.1 cdna:novel chromosome:V1.0:Gm06:14430561:14433504:-1 gene:GLYMA06G18120 transcript:GLYMA06G18120.1212130.04553.5
5'     CAAAAGAGCTTATGGCTTGTA        3'
||||||||||| |||o|||
3' TTGTTTTTTCTCGAATTACGAGCATTGTCCCA 5'
557Glycine maxTGACAGAAGAGAGTGAGCACalignmentplotGSM848963_Cot25_unique_seq_countGLYMA01G08056.2 cdna:novel chromosome:V1.0:Gm01:9051047:9057050:-1 gene:GLYMA01G08056 transcript:GLYMA01G08056.22128403061
5'     TGACAGAAGAGAGTGAGCAC         3'
||||||||||||| ||||||
3' CTAGACTGTCTTCTCTCTCTCGTGTCGAACTA 5'
558Glycine maxTGGAGAAGCAGGGCACGTGCAalignmentplotGSM848963_Cot25_unique_seq_countGLYMA05G00930.1 cdna:novel chromosome:V1.0:Gm05:542676:544662:-1 gene:GLYMA05G00930 transcript:GLYMA05G00930.128830234.62.5
5'     TGGAGAAGCAGGGCACGTGCA        3'
||||||||||||||||||o
3' CCTAACCTCTTCGTCCCGTGCATTCGGCTTAG 5'
559Glycine maxTTTGGATTGAAGGGAGCTCalignmentplotGSM848963_Cot25_unique_seq_countGLYMA13G25716.2 cdna:novel chromosome:V1.0:Gm13:28929349:28934215:1 gene:GLYMA13G25716 transcript:GLYMA13G25716.2218300.011022
5'     TTTGGATTGAAGGGAGCTC          3'
||||| ||||||||||||
3' CCTATAACCTCACTTCCCTCGAGGTTGAAGTA 5'
560Glycine maxCAATCAGAACGTGACACGTGAalignmentplotGSM848963_Cot25_unique_seq_countGLYMA15G43050.1 cdna:novel chromosome:V1.0:Gm15:50553764:50558289:-1 gene:GLYMA15G43050 transcript:GLYMA15G43050.107320233.285713
5'     CAATCAGAACGTGACACGTGA        3'
|||||| ||o|o||||||||
3' ACCTATTAGTC-TGTATTGTGCACTGAAGTAT 5'
561Glycine maxTTGACAGAAGATAGAGAGCACalignmentplotGSM848963_Cot25_unique_seq_countGLYMA18G00903.1 cdna:novel chromosome:V1.0:Gm18:426939:431809:1 gene:GLYMA18G00903 transcript:GLYMA18G00903.112437060601
5'     TTGACAGAAGATAGAGAGCAC        3'
||||||||||| |||||||||
3' AAGCAACTGTCTTCTCTCTCTCGTGCCAATTG 5'
562Glycine maxGGAATGGGCTGATTGGGAAGCalignmentplotGSM848963_Cot25_unique_seq_countGLYMA19G41400.3 cdna:novel chromosome:V1.0:Gm19:47672810:47682604:1 gene:GLYMA19G41400 transcript:GLYMA19G41400.3223230.01632.5
5'     GGAATGGGCTGATTGGGAAGC        3'
|||| ||||||||||o||||
3' GGGCACTTA-CCGACTAACCTTTCGACCTATC 5'
563Glycine maxTGATTGAGCCGTGCCAATATalignmentplotGSM848963_Cot25_unique_seq_countGLYMA11G17490.1 cdna:novel chromosome:V1.0:Gm11:13613694:13616986:1 gene:GLYMA11G17490 transcript:GLYMA11G17490.111661060300.5
5'     TGATTGAGCCGTGCCAATAT         3'
|||||||||||o||||||||
3' AACCACTAACTCGGCGCGGTTATAGGGCACGC 5'
564Glycine maxTTCCACAGCTTTCTTGAACTTalignmentplotGSM848963_Cot25_unique_seq_countGLYMA17G35090.2 cdna:novel chromosome:V1.0:Gm17:39077361:39082558:1 gene:GLYMA17G35090 transcript:GLYMA17G35090.2212710.054916.33333
5'    TTCCACA-GCTTTCTTGAACTT        3'
||||||| ||||||||||||
3' CGGAAGGTGTCCGAAAGAACTTGCTACCGCAG 5'
565Glycine maxTGGAGAAGCAGGGCACGTGCAalignmentplotGSM848963_Cot25_unique_seq_countGLYMA06G21020.1 cdna:known chromosome:V1.0:Gm06:17431771:17433898:1 gene:GLYMA06G21020 transcript:GLYMA06G21020.1211060.02234.62.5
5'     TGGAGAAGCAGGGCACGTGCA        3'
||||||||||||||||||o
3' CCTAACCTCTTCGTCCCGTGCATTCGTCTTAG 5'
566Glycine maxTCATCATCATCATCTTCTTCTalignmentplotGSM848963_Cot25_unique_seq_countGLYMA10G04280.1 cdna:known chromosome:V1.0:Gm10:3247992:3250886:-1 gene:GLYMA10G04280 transcript:GLYMA10G04280.129630.0459592
5'     TCATCATCATCATCTTCTTCT        3'
||||| ||||||||||| |||
3' AACAAGTAGAAGTAGTAGAAGCAGAAGTAGAA 5'
567Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848963_Cot25_unique_seq_countGLYMA07G05370.1 cdna:novel chromosome:V1.0:Gm07:4014246:4016764:1 gene:GLYMA07G05370 transcript:GLYMA07G05370.105940.02115.53
5'     TTCCACAGCTTTCTTGAAC          3'
|||| ||| |||||||| |
3' ACGAAAGG-GTCCAAAGAACTAGTTCGTTGTA 5'
568Glycine maxTGAAGCTGCCAGCATGATCTalignmentplotGSM848963_Cot25_unique_seq_countGLYMA15G09750.2 cdna:novel chromosome:V1.0:Gm15:6969486:6976414:-1 gene:GLYMA15G09750 transcript:GLYMA15G09750.2032390.0260153
5'     TGAAGCTGCCAGCATGATCT         3'
||||||||||| ||||||
3' TTTATGTTCGACGGTCGGACTAGAGTGTCCCA 5'
569Glycine maxTTGAGCCGTGCCAATATCAalignmentplotGSM848963_Cot25_unique_seq_countGLYMA11G17490.1 cdna:novel chromosome:V1.0:Gm11:13613694:13616986:1 gene:GLYMA11G17490 transcript:GLYMA11G17490.121658048241.5
5'     TTGAGCCGTGCCAATATCA          3'
||||||||o|||||||||
3' CACTAACTCGGCGCGGTTATAGGGCACGCGCT 5'
570Glycine maxTTTGGATTGAAGGGAGCTCalignmentplotGSM848963_Cot25_unique_seq_countGLYMA03G38120.1 cdna:novel chromosome:V1.0:Gm03:44522026:44526882:1 gene:GLYMA03G38120 transcript:GLYMA03G38120.1226110.05632.5
5'     TTTGGATTGAAGGGAGCTC          3'
||||||o||| |||| |||
3' ACGGAAACCTGACTCCCCTGGAGAACGTGGTC 5'
571Glycine maxTTGACAGAAGATAGAGAGCACalignmentplotGSM848963_Cot25_unique_seq_countGLYMA17G08840.2 cdna:novel chromosome:V1.0:Gm17:6526544:6532020:-1 gene:GLYMA17G08840 transcript:GLYMA17G08840.211901060152
5'     TTGACAGAAGATAGAGAGCAC        3'
|||||||||| |||||||||
3' ACTCTACTGTCTTCTCTCTCTCGTGTTGTTCT 5'
572Glycine maxTTGACAGAAGATAGAGAGCACalignmentplotGSM848963_Cot25_unique_seq_countGLYMA04G32002.1 cdna:novel chromosome:V1.0:Gm04:36451982:36456753:1 gene:GLYMA04G32002 transcript:GLYMA04G32002.121937060152
5'     TTGACAGAAGATAGAGAGCAC        3'
|||||||||| |||||||||
3' ACTCTACTGTCTTCTCTCTCTCGTGTCGGTCT 5'
573Glycine maxCCGGAAGAGGAAAATTAAGCAAalignmentplotGSM848963_Cot25_unique_seq_countGLYMA06G45080.4 cdna:novel chromosome:V1.0:Gm06:47855010:47859775:1 gene:GLYMA06G45080 transcript:GLYMA06G45080.4217250.02161.777783.5
5'     CCGGAAGAGGAA-AATTAAGCAA      3'
|o||||||||| |||||||| |
3' TACTCGTCTTCTCCTTATTAATTCGATAACAA 5'
574Glycine maxTTCATTTTTAAAATAGGCATTalignmentplotGSM848963_Cot25_unique_seq_countGLYMA07G05360.2 cdna:novel chromosome:V1.0:Gm07:3999102:4001108:1 gene:GLYMA07G05360 transcript:GLYMA07G05360.228890420.5
5'     TTCATTTTTAAAATAGGCATT        3'
|||||||o|||||||||||||
3' ACAAAAGTAAAGATTTTATCCGTAACAATTTA 5'
575Glycine maxTCGCTTGGTGCAGGTCGGGAAalignmentplotGSM848963_Cot25_unique_seq_countGLYMA05G25150.1 cdna:novel chromosome:V1.0:Gm05:31295886:31298052:1 gene:GLYMA05G25150 transcript:GLYMA05G25150.109740.0130103.5
5'    TCGCTTGG-TGCAGGTCGGGAA        3'
| |||||| |||||oo|o||||
3' ATCAACGAACCGACGTCTGGTCCTTGCTCTCT 5'
576Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848963_Cot25_unique_seq_countGLYMA09G34565.1 cdna:novel chromosome:V1.0:Gm09:40925699:40929850:1 gene:GLYMA09G34565 transcript:GLYMA09G34565.11610060301
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' ACTAAGGTGTCCGAAAGAACTTGCCATTGCTG 5'
577Glycine maxTGGAGAAGCAGGGCACGTGCAalignmentplotGSM848963_Cot25_unique_seq_countGLYMA04G33270.1 cdna:novel chromosome:V1.0:Gm04:38776490:38778616:-1 gene:GLYMA04G33270 transcript:GLYMA04G33270.1210660.04234.63.5
5'     TGGAGAAGCAGGGCACGTGCA        3'
||||||||||||| ||||o
3' CCTAACCTCTTCGTCCCATGCATTCGGCATAG 5'
578Glycine maxTGCCTGGCTCCCTGTATGCCalignmentplotGSM848963_Cot25_unique_seq_countGLYMA13G02410.1 cdna:novel chromosome:V1.0:Gm13:2276691:2281351:-1 gene:GLYMA13G02410 transcript:GLYMA13G02410.101530060600.5
5'     TGCCTGGCTCCCTGTATGCC         3'
||||||||||||||o|||||
3' TAGTACGGACCGAGGGACGTACGGTCGTCCTT 5'
579Glycine maxTCCAAAGGGATCGCATTGATCalignmentplotGSM848963_Cot25_unique_seq_countGLYMA03G36770.1 cdna:novel chromosome:V1.0:Gm03:43630257:43634178:1 gene:GLYMA03G36770 transcript:GLYMA03G36770.12180601471
5'     TCCAAAGGGATCGCATTGATC        3'
|||||||||||||||||| ||
3' CTGTAGGTTTCCCTAGCGTAAC-AGAGGTCGA 5'
580Glycine maxTCGGACCAGGCTTCATTCCalignmentplotGSM848963_Cot25_unique_seq_countGLYMA06G09100.1 cdna:novel chromosome:V1.0:Gm06:6696969:6703161:1 gene:GLYMA06G09100 transcript:GLYMA06G09100.1295706061
5'     TCGGACCAGGCTTCATTCC          3'
o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTCCGTAAAC 5'
581Glycine maxTCGGACCAGGCTTCATTCCCalignmentplotGSM848963_Cot25_unique_seq_countGLYMA06G09100.1 cdna:novel chromosome:V1.0:Gm06:6696969:6703161:1 gene:GLYMA06G09100 transcript:GLYMA06G09100.1295706061.5
5'     TCGGACCAGGCTTCATTCCC         3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAAA 5'
582Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848963_Cot25_unique_seq_countGLYMA04G40880.2 cdna:novel chromosome:V1.0:Gm04:46789378:46792963:-1 gene:GLYMA04G40880 transcript:GLYMA04G40880.2211130418.21
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCCCCTGCCG 5'
583Glycine maxTGCCTGGCTCCCTGTATGCCalignmentplotGSM848963_Cot25_unique_seq_countGLYMA10G06080.2 cdna:novel chromosome:V1.0:Gm10:4819433:4824893:-1 gene:GLYMA10G06080 transcript:GLYMA10G06080.202010060150.5
5'     TGCCTGGCTCCCTGTATGCC         3'
||||||||||||||o|||||
3' TCGTACGGACCGAGGGACGTACGGTCGTCCAC 5'
584Glycine maxTTTGGATTGAAGGGAGCTCalignmentplotGSM848963_Cot25_unique_seq_countGLYMA15G35860.4 cdna:novel chromosome:V1.0:Gm15:40661766:40666367:1 gene:GLYMA15G35860 transcript:GLYMA15G35860.4219300.041022
5'     TTTGGATTGAAGGGAGCTC          3'
||||| ||||||||||||
3' CCTATAACCTCACTTCCCTCGAGGTTGAAGTG 5'
585Glycine maxCTTTGTATTCTTCCACAGCTTalignmentplotGSM848963_Cot25_unique_seq_countGLYMA12G32780.4 cdna:novel chromosome:V1.0:Gm12:36201283:36214886:-1 gene:GLYMA12G32780 transcript:GLYMA12G32780.4118990.013054
5'     CTTTGTATTCTTCCACAGCTT        3'
||||||| || ||||| | ||
3' CTAAGAAACATCAGTAGGTG-CTAAGTTGTCA 5'
586Glycine maxTTGACAGAAGATAGAGAGCACalignmentplotGSM848963_Cot25_unique_seq_countGLYMA02G30670.2 cdna:novel chromosome:V1.0:Gm02:32711340:32716829:-1 gene:GLYMA02G30670 transcript:GLYMA02G30670.20962060601
5'     TTGACAGAAGATAGAGAGCAC        3'
||||||||||| |||||||||
3' ACTGAACTGTCTTCTCTCTCTCGTGTCAAACT 5'
587Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848963_Cot25_unique_seq_countGLYMA06G13960.2 cdna:novel chromosome:V1.0:Gm06:11041407:11044426:1 gene:GLYMA06G13960 transcript:GLYMA06G13960.227130418.21
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCCCCTGCCG 5'
588Glycine maxTGACAGAAGAGAGTGAGCACalignmentplotGSM848963_Cot25_unique_seq_countGLYMA02G30670.2 cdna:novel chromosome:V1.0:Gm02:32711340:32716829:-1 gene:GLYMA02G30670 transcript:GLYMA02G30670.22961037371
5'     TGACAGAAGAGAGTGAGCAC         3'
||||||||||||| ||||||
3' CTGAACTGTCTTCTCTCTCTCGTGTCAAACTC 5'
589Glycine maxTTGACAGAAGATAGAGAGCACalignmentplotGSM848963_Cot25_unique_seq_countGLYMA18G36960.1 cdna:novel chromosome:V1.0:Gm18:43828448:43833563:1 gene:GLYMA18G36960 transcript:GLYMA18G36960.12902020201
5'     TTGACAGAAGATAGAGAGCAC        3'
||||||||||| |||||||||
3' ACAGAACTGTCTTCTCTCTCTCGTGTCAAACT 5'
590Glycine maxATTGAGCCGCGTCAATATCalignmentplotGSM848963_Cot25_unique_seq_countGLYMA05G27850.1 cdna:novel chromosome:V1.0:Gm05:33708696:33715812:-1 gene:GLYMA05G27850 transcript:GLYMA05G27850.1021670.0228143.5
5'     ATTGAGCCGCGTCAATATC          3'
|o| ||||o| ||||o|||
3' GTCATGA-TCGGTGGAGTTGTAGGAAGAACCC 5'
591Glycine maxCAGAGAGCAGAAACAGAACTGalignmentplotGSM848963_Cot25_unique_seq_countGLYMA01G35410.1 cdna:novel chromosome:V1.0:Gm01:47910024:47911708:-1 gene:GLYMA01G35410 transcript:GLYMA01G35410.107050.0530304
5'     CAGAGAGCAGAAACAGAACTG        3'
|||| |o|||||| ||| |o|
3' CTTCGTCT-TTGTCTTTCTCTGGGCAGAAATC 5'
592Glycine maxCTTGTTTGTGGTGATGTCTalignmentplotGSM848963_Cot25_unique_seq_countGLYMA07G39020.1 cdna:known chromosome:V1.0:Gm07:43621171:43623713:-1 gene:GLYMA07G39020 transcript:GLYMA07G39020.1236602914.51.5
5'    CTTGTT-TGTGGTGATGTCT          3'
|||||| ||||o||||||||
3' ACTGAACAAGACACTACTACAGAAGTCGGACT 5'
593Glycine maxTCCAAAGGGATCGCATTGATCalignmentplotGSM848963_Cot25_unique_seq_countGLYMA19G39420.1 cdna:novel chromosome:V1.0:Gm19:46102119:46105994:1 gene:GLYMA19G39420 transcript:GLYMA19G39420.12178801471
5'     TCCAAAGGGATCGCATTGATC        3'
|||||||||||||||||| ||
3' CTGTAGGTTTCCCTAGCGTAAC-AGAGGTCGA 5'
594Glycine maxTTAATCAAGGAAATCACGGTTalignmentplotGSM848963_Cot25_unique_seq_countGLYMA08G08430.1 cdna:known chromosome:V1.0:Gm08:6040931:6043635:1 gene:GLYMA08G08430 transcript:GLYMA08G08430.113250.0230304
5'     TTAATCAAGGAAATCACGGTT        3'
o||||||||| |||| |||o
3' ACGTCGTTAGTTCCTGTAGTCCCAGCCTTTGC 5'
595Glycine maxTGCCTGGCTCCCTGTATGCCalignmentplotGSM848963_Cot25_unique_seq_countGLYMA13G40030.1 cdna:novel chromosome:V1.0:Gm13:40591013:40594198:1 gene:GLYMA13G40030 transcript:GLYMA13G40030.111779030300
5'     TGCCTGGCTCCCTGTATGCC         3'
||||||||||||||||||||
3' TCTTACGGACCGAGGGACATACGGACGTCCTC 5'
596Glycine maxTTTGGATTGAAGGGAGCTCalignmentplotGSM848963_Cot25_unique_seq_countGLYMA20G11040.2 cdna:novel chromosome:V1.0:Gm20:15555630:15561246:1 gene:GLYMA20G11040 transcript:GLYMA20G11040.2215250.0331.52
5'     TTTGGATTGAAGGGAGCTC          3'
||||| ||||||||||||
3' CCTATAACCTCACTTCCCTCGAGGTTGAAGTA 5'
597Glycine maxTTCCACAGCTTTCTTGAACTTalignmentplotGSM848963_Cot25_unique_seq_countGLYMA04G40880.4 cdna:novel chromosome:V1.0:Gm04:46789378:46792991:-1 gene:GLYMA04G40880 transcript:GLYMA04G40880.4211410.04418.23
5'    TTCCACA-GCTTTCTTGAACTT        3'
||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCCCCTGCCG 5'
598Glycine maxATGCACTGCCTGTTCCCTGGCalignmentplotGSM848963_Cot25_unique_seq_countGLYMA06G12680.1 cdna:known chromosome:V1.0:Gm06:9846264:9847599:-1 gene:GLYMA06G12680 transcript:GLYMA06G12680.12113017172.5
5'     ATGCACTGCCTGTTCCCTGGC        3'
||||||||||| |||||||o
3' TTTCTACGTGACGGAGAAGGGACTCTGTAAGA 5'
599Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848963_Cot25_unique_seq_countGLYMA09G07990.1 cdna:novel chromosome:V1.0:Gm09:7003261:7005873:-1 gene:GLYMA09G07990 transcript:GLYMA09G07990.12486060121
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCTAAGAAGG 5'
600Glycine maxTTGCCGATTCCACCCATTCCTAalignmentplotGSM848963_Cot25_unique_seq_countGLYMA17G34650.2 cdna:novel chromosome:V1.0:Gm17:38635991:38640855:1 gene:GLYMA17G34650 transcript:GLYMA17G34650.223840.022044
5'     TTGCCGATTCCACCCATTCCTA       3'
|||||o|o||| ||| |||||
3' CGAGAACGGTTGAGGAGGGAAAGGACTGTTCT 5'
601Glycine maxTCATCATCATCATCATCTTCAalignmentplotGSM848963_Cot25_unique_seq_countGLYMA20G23790.1 cdna:novel chromosome:V1.0:Gm20:33530315:33537439:-1 gene:GLYMA20G23790 transcript:GLYMA20G23790.125680.01331
5'     TCATCATCATCATCATCTTCA        3'
|| ||||||||||||||||||
3' TAGGAGGAGTAGTAGTAGTAGAAGTAGTAGTA 5'
602Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848963_Cot25_unique_seq_countGLYMA17G05800.1 cdna:novel chromosome:V1.0:Gm17:4086935:4089150:1 gene:GLYMA17G05800 transcript:GLYMA17G05800.10422060121
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCCAAAAAGG 5'
603Glycine maxTGCCTGGCTCCCTGTATGCCalignmentplotGSM848963_Cot25_unique_seq_countGLYMA19G36571.1 cdna:novel chromosome:V1.0:Gm19:43842474:43846765:-1 gene:GLYMA19G36571 transcript:GLYMA19G36571.102324041410
5'     TGCCTGGCTCCCTGTATGCC         3'
||||||||||||||||||||
3' TCGTACGGACCGAGGGACATACGGTCGTCCTC 5'
604Glycine maxTGCACTGCCTCTTTCCTGGCTalignmentplotGSM848963_Cot25_unique_seq_countGLYMA06G12680.1 cdna:known chromosome:V1.0:Gm06:9846264:9847599:-1 gene:GLYMA06G12680 transcript:GLYMA06G12680.121120.0329293
5'     TGCACTGCCTCTTTCCTGGCT        3'
|||||||||||||o||||o
3' TTCTACGTGACGGAGAAGGGACTCTGTAAGAC 5'
605Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848963_Cot25_unique_seq_countGLYMA10G07790.2 cdna:novel chromosome:V1.0:Gm10:6583388:6586706:1 gene:GLYMA10G07790 transcript:GLYMA10G07790.20646060601
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' AACAAGGTGTCCGAAAGAACTTGCCAAGGCCG 5'
606Glycine maxTTTGGATTGAAGGGAGCTCalignmentplotGSM848963_Cot25_unique_seq_countGLYMA04G15150.3 cdna:novel chromosome:V1.0:Gm04:15669460:15674719:1 gene:GLYMA04G15150 transcript:GLYMA04G15150.311355060151
5'     TTTGGATTGAAGGGAGCTC          3'
|||||| ||||||||||||
3' CCTTAAACCTCACTTCCCTCGAGACTGAAACG 5'
607Glycine maxTGCCTGGCTCCCTGTATGCCalignmentplotGSM848963_Cot25_unique_seq_countGLYMA09G28360.2 cdna:novel chromosome:V1.0:Gm09:35348339:35353261:1 gene:GLYMA09G28360 transcript:GLYMA09G28360.222521060150.5
5'     TGCCTGGCTCCCTGTATGCC         3'
||||||||||||o|||||||
3' TCGTACGGACCGAGGGGCATACGGACGTCTGG 5'
608Glycine maxAGGGATAGGTAAAACAATGACalignmentplotGSM848963_Cot25_unique_seq_countGLYMA02G08415.1 cdna:novel chromosome:V1.0:Gm02:6599275:6600860:1 gene:GLYMA02G08415 transcript:GLYMA02G08415.1296017172.5
5'     AGGGATAGGTAAAACAATGAC        3'
||o|||||||||||||oo||
3' AACCACCTTATCCATTTTGTTGTTGATTGATA 5'
609Glycine maxTTTGGATTGAAGGGAGCTCalignmentplotGSM848963_Cot25_unique_seq_countGLYMA15G08630.1 cdna:novel chromosome:V1.0:Gm15:6108906:6112083:-1 gene:GLYMA15G08630 transcript:GLYMA15G08630.1210800.01441.5
5'     TTTGGATTGAAGGGAGCTC          3'
||||| |||||||o|||||
3' TTTGAAACCAAACTTCCTTCGAGACCTAGACC 5'
610Glycine maxTCGGACCAGGCTTCATTCCalignmentplotGSM848963_Cot25_unique_seq_countGLYMA08G13110.1 cdna:novel chromosome:V1.0:Gm08:9562597:9569062:1 gene:GLYMA08G13110 transcript:GLYMA08G13110.121092060121
5'     TCGGACCAGGCTTCATTCC          3'
o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAAAC 5'
611Glycine maxTCGGACCAGGCTTCATTCCCalignmentplotGSM848963_Cot25_unique_seq_countGLYMA08G13110.1 cdna:novel chromosome:V1.0:Gm08:9562597:9569062:1 gene:GLYMA08G13110 transcript:GLYMA08G13110.121092060121.5
5'     TCGGACCAGGCTTCATTCCC         3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAAA 5'
612Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848963_Cot25_unique_seq_countGLYMA11G11826.1 cdna:novel chromosome:V1.0:Gm11:8435940:8440047:1 gene:GLYMA11G11826 transcript:GLYMA11G11826.12615060121
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' ACTAAGGTGTCCGAAAGAACTTGCCAACGCCG 5'
613Glycine maxTTGACAGAAGATAGAGAGCACalignmentplotGSM848963_Cot25_unique_seq_countGLYMA07G07870.1 cdna:known chromosome:V1.0:Gm07:6522220:6529131:1 gene:GLYMA07G07870 transcript:GLYMA07G07870.10335060603.5
5'     TTGACAGAAGATAGAGAGCAC        3'
|||||||||| o|||||||
3' CACCCACTGTCTTCTCGTTCTCGTGTCTCCTC 5'
614Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848963_Cot25_unique_seq_countGLYMA13G21625.1 cdna:novel chromosome:V1.0:Gm13:25212900:25216570:1 gene:GLYMA13G21625 transcript:GLYMA13G21625.10604030301
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' AACAAGGTGTCCGAAAGAACTTGCCAAAGCCG 5'
615Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848963_Cot25_unique_seq_countGLYMA07G04290.1 cdna:novel chromosome:V1.0:Gm07:3149413:3151946:-1 gene:GLYMA07G04290 transcript:GLYMA07G04290.12728060121
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCCAAAGACG 5'
616Glycine maxTGAAGCTGCCAGCATGATCTalignmentplotGSM848963_Cot25_unique_seq_countGLYMA15G00770.2 cdna:novel chromosome:V1.0:Gm15:462686:466246:-1 gene:GLYMA15G00770 transcript:GLYMA15G00770.201634050502
5'     TGAAGCTGCCAGCATGATCT         3'
||||||||||||| || |||
3' GTAGACTTCGACGGTCG-ACAAGATGGCAGGA 5'
617Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848963_Cot25_unique_seq_countGLYMA15G19460.1 cdna:novel chromosome:V1.0:Gm15:16759912:16762499:-1 gene:GLYMA15G19460 transcript:GLYMA15G19460.10450060601
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCTAAGAAGG 5'
618Glycine maxCAGAGAGCAGAAACAGAACTGalignmentplotGSM848963_Cot25_unique_seq_countGLYMA18G39771.2 cdna:novel chromosome:V1.0:Gm18:47890776:47893894:-1 gene:GLYMA18G39771 transcript:GLYMA18G39771.2077704723.53
5'     CAGAGAGCAGAAACAGAACTG        3'
||| | ||||||| |||||||
3' CGTAGTCGCACGTCTTT-TCTTGACAATCTTC 5'
619Glycine maxTTGACAGAAGATAGAGAGCACalignmentplotGSM848963_Cot25_unique_seq_countGLYMA03G29901.1 cdna:novel chromosome:V1.0:Gm03:37904151:37914523:-1 gene:GLYMA03G29901 transcript:GLYMA03G29901.101149030151
5'     TTGACAGAAGATAGAGAGCAC        3'
||||||||||| |||||||||
3' ACTAAACTGTCTTCTCTCTCTCGTGTCGAGCT 5'
620Glycine maxTGAAGCTGCCAGCATGATCTalignmentplotGSM848963_Cot25_unique_seq_countGLYMA18G05330.1 cdna:novel chromosome:V1.0:Gm18:4066963:4074557:1 gene:GLYMA18G05330 transcript:GLYMA18G05330.1029260.0330303
5'     TGAAGCTGCCAGCATGATCT         3'
||||||||||| ||||||
3' CTTGTGTTCGACGGTCGGACTAGATTCTCCCA 5'
621Glycine maxGCCTGGCTCCCTGTATGCCalignmentplotGSM848963_Cot25_unique_seq_countGLYMA02G12900.3 cdna:novel chromosome:V1.0:Gm02:11166630:11169455:1 gene:GLYMA02G12900 transcript:GLYMA02G12900.3214350.033062.5
5'     GCCTGGCTCCCTGTATGCC          3'
o||||||| ||||| ||||
3' GACTTGGACCGATGGACA-ACGGAGTATACCT 5'
622Glycine maxCAGAGAGCAGAAACAGAACTGalignmentplotGSM848963_Cot25_unique_seq_countGLYMA08G15090.1 cdna:known chromosome:V1.0:Gm08:10946832:10949797:1 gene:GLYMA08G15090 transcript:GLYMA08G15090.116600.0430304
5'     CAGAGAGCAGAAACAGAACTG        3'
|||o|| ||||||| ||||o
3' AACGATCTTTCATCTTTGT-TTGATAACAGAT 5'
623Glycine maxTAACAAGTGGGTTTGTTGACTGalignmentplotGSM848963_Cot25_unique_seq_countGLYMA05G30140.1 cdna:known chromosome:V1.0:Gm05:35569728:35575763:-1 gene:GLYMA05G30140 transcript:GLYMA05G30140.1214890.0230303
5'     TAACAAGTGGGTTTGTTGACTG       3'
o | |||||||||o||||||||
3' AACAGGT-TTCACCCAAGCAACTGACCAAGTA 5'
624Glycine maxGTATAGCATCATGAGCAATCAalignmentplotGSM848963_Cot25_unique_seq_countGLYMA20G23760.1 cdna:known chromosome:V1.0:Gm20:33512670:33523842:-1 gene:GLYMA20G23760 transcript:GLYMA20G23760.114950.0115154
5'     GTATAGCATCATGAGCAATCA        3'
|| | ||||||||| |||||
3' CACCCA-ACCGTAGTACTAGTTAGAAATGTTG 5'
625Glycine maxCAATCAGAACGTGACACGTGAalignmentplotGSM848963_Cot25_unique_seq_countGLYMA11G34970.1 cdna:novel chromosome:V1.0:Gm11:36719683:36722379:1 gene:GLYMA11G34970 transcript:GLYMA11G34970.1214560.0419193.5
5'    CAATCAGA-ACGTGACACGTGA        3'
|||o|||| ||||o| ||o|||
3' ATGGTTGGTCTGTGCATTTTGTACTTGAGTCT 5'
626Glycine maxCAAACCTCCGTAGCCTGTATCalignmentplotGSM848963_Cot25_unique_seq_countGLYMA15G06570.1 cdna:novel chromosome:V1.0:Gm15:4643944:4647571:-1 gene:GLYMA15G06570 transcript:GLYMA15G06570.112645030303
5'     CAAACCTCCGTAGCCTGTATC        3'
|||| |||||o|o||| ||||
3' CATAGTTTTGAGGCGTTGGA-ATAGTGTCAGG 5'
627Glycine maxTGGAGAAGCAGGGCACGTGCAalignmentplotGSM848963_Cot25_unique_seq_countGLYMA17G10970.1 cdna:known chromosome:V1.0:Gm17:8247753:8249783:1 gene:GLYMA17G10970 transcript:GLYMA17G10970.129180.02234.62.5
5'     TGGAGAAGCAGGGCACGTGCA        3'
||||||||||||||||||o
3' CCTAACCTCTTCGTCCCGTGCATTCGGCATAG 5'
628Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848963_Cot25_unique_seq_countGLYMA12G01730.2 cdna:novel chromosome:V1.0:Gm12:1061212:1065353:1 gene:GLYMA12G01730 transcript:GLYMA12G01730.22576060121
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' ACTAAGGTGTCCGAAAGAACTTGCCAACGCCG 5'
629Glycine maxTGCGAGTGTCTTCGCCTCTGalignmentplotGSM848963_Cot25_unique_seq_countGLYMA03G14888.1 cdna:novel chromosome:V1.0:Gm03:19079982:19089860:-1 gene:GLYMA03G14888 transcript:GLYMA03G14888.12144019192.5
5'     TGCGAGTGTCTTCGCCTCTG         3'
oo|||||o||||| ||||||
3' CATCGTGCTCATAGAAGAGGAGACTTCGAGTA 5'
630Glycine maxTCGGACCAGGCTTCATTCCalignmentplotGSM848963_Cot25_unique_seq_countGLYMA05G21726.1 cdna:novel chromosome:V1.0:Gm05:26595908:26602630:1 gene:GLYMA05G21726 transcript:GLYMA05G21726.1219306060.5
5'     TCGGACCAGGCTTCATTCC          3'
o||||||||||||||||||
3' CTTAGGCCTGGTCCGAAGTAAGGTACGTAAAC 5'
631Glycine maxTCGCTTGGTGCAGGTCGGGAAalignmentplotGSM848963_Cot25_unique_seq_countGLYMA10G30650.1 cdna:novel chromosome:V1.0:Gm10:39265566:39269217:1 gene:GLYMA10G30650 transcript:GLYMA10G30650.121370.0430303
5'     TCGCTTGGTGCAGGTCGGGAA        3'
|||||o|| ||||o ||||||
3' AACTAGCGAGCCTCGTCTTGCCCTTTGTCTAC 5'
632Glycine maxCTTGTTTGTGGTGATGTCTalignmentplotGSM848963_Cot25_unique_seq_countGLYMA04G10761.1 cdna:novel chromosome:V1.0:Gm04:9030583:9031520:-1 gene:GLYMA04G10761 transcript:GLYMA04G10761.12150.012914.51.5
5'    CTTGTT-TGTGGTGATGTCT          3'
|||||| ||||o||||||||
3' ACTGAACAAGACACTACTACAGAAGTCG 5'
633Glycine maxAAGCCAAGGATGACTTGCCGAalignmentplotGSM848963_Cot25_unique_seq_countGLYMA12G36540.2 cdna:novel chromosome:V1.0:Gm12:39579501:39585865:-1 gene:GLYMA12G36540 transcript:GLYMA12G36540.2211630.05304.285713.5
5'     AAGCCAAGGATGACTTGCCGA        3'
||||||||o|||| |||||
3' TTGATTCGGTTCTTACTTAACGGAAGATATGT 5'
634Glycine maxTTGCCGATTCCACCCATTCCTAalignmentplotGSM848963_Cot25_unique_seq_countGLYMA06G45200.2 cdna:novel chromosome:V1.0:Gm06:48018462:48023777:1 gene:GLYMA06G45200 transcript:GLYMA06G45200.2210180.0151.666674
5'     TTGCCGATTCCACCCATTCCTA       3'
|||||o|||||| || ||||o
3' CGTAAACGGTTAAGGTTGGAAAGGGCACCGCC 5'
635Glycine maxTGCCTGGCTCCCTGTATGCCalignmentplotGSM848963_Cot25_unique_seq_countGLYMA20G32040.1 cdna:novel chromosome:V1.0:Gm20:40662803:40666056:-1 gene:GLYMA20G32040 transcript:GLYMA20G32040.121600017170
5'     TGCCTGGCTCCCTGTATGCC         3'
||||||||||||||||||||
3' TCCTACGGACCGAGGGACATACGGAGGTCTTG 5'
636Glycine maxTAGCATCATCAAGATTCACATalignmentplotGSM848964_SC25_unique_seq_countGLYMA11G05581.1 cdna:novel chromosome:V1.0:Gm11:3926579:3929091:1 gene:GLYMA11G05581 transcript:GLYMA11G05581.10760.01206.666673.5
5'     TAGCATCATCAAGATTCAC-AT       3'
o|||| ||||||||oo||| ||
3' AAGGGTCGTCGTAGTTCTGGGTGGTAGTCTTA 5'
637Glycine maxTCATTTTGCGTGCAATGATCTGalignmentplotGSM848964_SC25_unique_seq_countGLYMA09G02920.2 cdna:novel chromosome:V1.0:Gm09:2023553:2036875:-1 gene:GLYMA09G02920 transcript:GLYMA09G02920.22307201892
5'     TCATTTTGCGTGCAATGATCTG       3'
|||||||| |||||||||||oo
3' TTAAAGTAAAACACACGTTACTAGGTTTACGT 5'
638Glycine maxTGAGAGAAAGCCATGACTTACalignmentplotGSM848964_SC25_unique_seq_countGLYMA08G27941.2 cdna:novel chromosome:V1.0:Gm08:22208426:22211736:-1 gene:GLYMA08G27941 transcript:GLYMA08G27941.221900199.51
5'     TGAGAGAAAGCCATGACTTAC        3'
| |||||||||||||||||||
3' CTCTAGTCTCTTTCGGTACTGAATGTTTGTGT 5'
639Glycine maxTTCCACAGCTTTCTTGAACTGTalignmentplotGSM848964_SC25_unique_seq_countGLYMA02G02942.2 cdna:novel chromosome:V1.0:Gm02:2254118:2257679:1 gene:GLYMA02G02942 transcript:GLYMA02G02942.225490.0420103
5'    TTCCACA-GCTTTCTTGAACTGT       3'
o||| || ||||||o||||||||
3' AACGAGGCGTCCGAAAGGACTTGACAAAAGAG 5'
640Glycine maxTGACAGAAGAGAGTGAGCACalignmentplotGSM848964_SC25_unique_seq_countGLYMA02G13371.2 cdna:novel chromosome:V1.0:Gm02:11670695:11677264:-1 gene:GLYMA02G13371 transcript:GLYMA02G13371.22139801531
5'     TGACAGAAGAGAGTGAGCAC         3'
||||||||||||| ||||||
3' CTAGACTGTCTTCTCTCTCTCGTGTCGAACTA 5'
641Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848964_SC25_unique_seq_countGLYMA14G10090.1 cdna:novel chromosome:V1.0:Gm14:8190765:8195025:-1 gene:GLYMA14G10090 transcript:GLYMA14G10090.12110404013.33331
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' CGGAAGGTGTCCGAAAGAACTTGCTACCGCAG 5'
642Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848964_SC25_unique_seq_countGLYMA10G01400.1 cdna:novel chromosome:V1.0:Gm10:1026614:1033301:1 gene:GLYMA10G01400 transcript:GLYMA10G01400.1211700.02405.714292
5'     TTCCACAGCTTTCTTGA-AC         3'
|||||| |||||||||| ||
3' CAAGAAGGTGACGAAAGAACTATGGAAGTATC 5'
643Glycine maxTCATCATCATCATCTTCTTCTalignmentplotGSM848964_SC25_unique_seq_countGLYMA03G32020.3 cdna:novel chromosome:V1.0:Gm03:39830110:39837209:-1 gene:GLYMA03G32020 transcript:GLYMA03G32020.32824030300
5'     TCATCATCATCATCTTCTTCT        3'
|||||||||||||||||||||
3' AAGGAGTAGTAGTAGTAGAAGAAGAACGACAC 5'
644Glycine maxTGTTGTTTTACCTATTCCACCalignmentplotGSM848964_SC25_unique_seq_countGLYMA16G25097.1 cdna:novel chromosome:V1.0:Gm16:29030264:29034103:-1 gene:GLYMA16G25097 transcript:GLYMA16G25097.107920331
5'     TGTTGTTTTACCTATTCCACC        3'
||||||||||||o|o||||||
3' GTTCACAACAAAATGGGTGAGGTGGCTCAGGT 5'
645Glycine maxATTGAGCCGCGTCAATATCalignmentplotGSM848964_SC25_unique_seq_countGLYMA20G28090.2 cdna:novel chromosome:V1.0:Gm20:37034336:37042352:1 gene:GLYMA20G28090 transcript:GLYMA20G28090.217610.052053.5
5'     ATTGAGCCGCGTCAATATC          3'
|||||o| |||| |||||
3' GGACTAACTTGACGCA-TTATAACTTATTCTA 5'
646Glycine maxTTGACAGAAGATAGAGAGCACalignmentplotGSM848964_SC25_unique_seq_countGLYMA0005S50.1 cdna:novel chromosome:V1.0:Gm05:16185:21667:1 gene:GLYMA0005S50 transcript:GLYMA0005S50.111912040102
5'     TTGACAGAAGATAGAGAGCAC        3'
|||||||||| |||||||||
3' ACTCTACTGTCTTCTCTCTCTCGTGTTGTTCT 5'
647Glycine maxTTGGCATTCTGTCCACCTCCalignmentplotGSM848964_SC25_unique_seq_countGLYMA08G11030.4 cdna:novel chromosome:V1.0:Gm08:8058634:8062620:1 gene:GLYMA08G11030 transcript:GLYMA08G11030.421264082.666671
5'     TTGGCATTCTGTCCACCTCC         3'
||||||||||||| ||||||
3' TGCAAACCGTAAGACAGTTGGAGGAAGGTGTT 5'
648Glycine maxTTGCCGATTCCACCCATTCCTAalignmentplotGSM848964_SC25_unique_seq_countGLYMA12G01010.6 cdna:novel chromosome:V1.0:Gm12:553523:557447:-1 gene:GLYMA12G01010 transcript:GLYMA12G01010.621070.031233.5
5'     TTGCCGATTCCACCCATTCCTA       3'
o||||| ||||| || ||||||
3' TGGTGACGGCGAAGGTAGGGAAGGATTTGGGA 5'
649Glycine maxTCGGACCAGGCTTCATTCCalignmentplotGSM848964_SC25_unique_seq_countGLYMA12G08080.1 cdna:novel chromosome:V1.0:Gm12:5801673:5808673:1 gene:GLYMA12G08080 transcript:GLYMA12G08080.111424040201
5'     TCGGACCAGGCTTCATTCC          3'
o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTCCGTAGAC 5'
650Glycine maxTCGGACCAGGCTTCATTCCCalignmentplotGSM848964_SC25_unique_seq_countGLYMA12G08080.1 cdna:novel chromosome:V1.0:Gm12:5801673:5808673:1 gene:GLYMA12G08080 transcript:GLYMA12G08080.111424040201.5
5'     TCGGACCAGGCTTCATTCCC         3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAGA 5'
651Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848964_SC25_unique_seq_countGLYMA03G35010.3 cdna:novel chromosome:V1.0:Gm03:42329293:42333139:1 gene:GLYMA03G35010 transcript:GLYMA03G35010.31119102051
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' ATCAAGGTGTCCGAAAGAACTTGCCAAAGAAG 5'
652Glycine maxATATAGCATCGTGAGCAATCAalignmentplotGSM848964_SC25_unique_seq_countGLYMA03G38100.1 cdna:known chromosome:V1.0:Gm03:44505410:44509305:-1 gene:GLYMA03G38100 transcript:GLYMA03G38100.127880.0420203
5'     ATATAGCATCGTGA-GCAATCA       3'
|||o||||||||o| ||| |||
3' TTCGTATGTCGTAGCATTACGTAAGTTATAAG 5'
653Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848964_SC25_unique_seq_countGLYMA19G37740.1 cdna:novel chromosome:V1.0:Gm19:44838730:44842363:1 gene:GLYMA19G37740 transcript:GLYMA19G37740.1194302051
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' ATCAAGGTGTCCGAAAGAACTTGCCAAAGAAG 5'
654Glycine maxTGAAGCTGCCAGCATGATCTalignmentplotGSM848964_SC25_unique_seq_countGLYMA11G31940.2 cdna:novel chromosome:V1.0:Gm11:33249980:33257973:-1 gene:GLYMA11G31940 transcript:GLYMA11G31940.202802040203
5'     TGAAGCTGCCAGCATGATCT         3'
||||||||||| ||||||
3' CTTGTGTTCGACGGTCGGACTAGATTCTCCCA 5'
655Glycine maxTTGACAGAAGATAGAGAGCACalignmentplotGSM848964_SC25_unique_seq_countGLYMA11G36980.3 cdna:known chromosome:V1.0:Gm11:38244535:38250746:1 gene:GLYMA11G36980 transcript:GLYMA11G36980.3235270215.251
5'     TTGACAGAAGATAGAGAGCAC        3'
||||||||||| |||||||||
3' AAGCAACTGTCTTCTCTCTCTCGTGCCAATTG 5'
656Glycine maxTGAAGCTGCCAGCATGATCTalignmentplotGSM848964_SC25_unique_seq_countGLYMA13G29320.1 cdna:novel chromosome:V1.0:Gm13:32246000:32253054:1 gene:GLYMA13G29320 transcript:GLYMA13G29320.1133590.0340103
5'     TGAAGCTGCCAGCATGATCT         3'
||||||||||| ||||||
3' TTTATGTTCGACGGTCGGACTAGAGTGTCCCA 5'
657Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848964_SC25_unique_seq_countGLYMA02G30885.1 cdna:novel chromosome:V1.0:Gm02:33329697:33330499:-1 gene:GLYMA02G30885 transcript:GLYMA02G30885.113850.0231.52.5
5'     TTCCACAGCTTTCTTGAAC          3'
o||||||||||||||| |
3' AACCGAGGTGTCGAAAGAACCAGACAAAGAAC 5'
658Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848964_SC25_unique_seq_countGLYMA14G10100.2 cdna:novel chromosome:V1.0:Gm14:8199978:8204920:-1 gene:GLYMA14G10100 transcript:GLYMA14G10100.201147036121
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' CGGAAGGTGTCCGAAAGAACTTGCTACCGCAG 5'
659Glycine maxTTGCCGATTCCACCCATTCCTAalignmentplotGSM848964_SC25_unique_seq_countGLYMA13G37990.1 cdna:novel chromosome:V1.0:Gm13:38922846:38923913:1 gene:GLYMA13G37990 transcript:GLYMA13G37990.11340019193.5
5'     TTGCCGATTCCACCCATTCCTA       3'
|||||o||o||| ||||o|||
3' TGGGAACGGTTAGGGTCGGTAGGGAATTATTT 5'
660Glycine maxTGCACTGCCTCTTTCCTGGCTalignmentplotGSM848964_SC25_unique_seq_countGLYMA07G13840.1 cdna:novel chromosome:V1.0:Gm07:12990407:12992274:-1 gene:GLYMA07G13840 transcript:GLYMA07G13840.128840.01772.5
5'     TGCACTGCCTCTTTCCTGGCT        3'
||||||||||||o|||o||o
3' TTTGTCGTGACGGAGAAGGGATCGGGTACTTT 5'
661Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848964_SC25_unique_seq_countGLYMA13G16924.2 cdna:novel chromosome:V1.0:Gm13:20777152:20779829:-1 gene:GLYMA13G16924 transcript:GLYMA13G16924.2076904081
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCTAAAAAGG 5'
662Glycine maxTCATTTTGCGTGCAATGATCTGalignmentplotGSM848964_SC25_unique_seq_countGLYMA20G11300.1 cdna:novel chromosome:V1.0:Gm20:15974440:15978138:1 gene:GLYMA20G11300 transcript:GLYMA20G11300.117520.0320104
5'    TCA-TTTTGCGTGCAATGATCTG       3'
||| |||o||||||| |o| |||
3' GTTAGTGAAAGCGCACGTAATTTGACCACGAC 5'
663Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848964_SC25_unique_seq_countGLYMA02G01370.5 cdna:novel chromosome:V1.0:Gm02:988758:995852:1 gene:GLYMA02G01370 transcript:GLYMA02G01370.5011540405.714292
5'     TTCCACAGCTTTCTTGAAC          3'
|||||| |||||||||| |
3' CAAGAAGGTGACGAAAGAACTAGGGAAGTATC 5'
664Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848964_SC25_unique_seq_countGLYMA02G27016.1 cdna:novel chromosome:V1.0:Gm02:28170820:28176308:1 gene:GLYMA02G27016 transcript:GLYMA02G27016.104920405.714293
5'     TTCCACAGCTTTCTTGAAC          3'
|||||| ||||||||||
3' CAAGAAGGTGACGAAAGAACTAAGGACTTTGT 5'
665Glycine maxGGATATTGGTCCGGTTCAATAalignmentplotGSM848964_SC25_unique_seq_countGLYMA06G09050.2 cdna:novel chromosome:V1.0:Gm06:6647326:6651348:1 gene:GLYMA06G09050 transcript:GLYMA06G09050.226720.04196.333333.5
5'     GGATATTGGTCC-GGTTCAATA       3'
o||| ||||||| |||o|||o|
3' GTCTTCTAAAACCAGGTCCAGGTTGTCGTTCT 5'
666Glycine maxTGAAGCTGCCAGCATGATCTGalignmentplotGSM848964_SC25_unique_seq_countGLYMA02G40650.2 cdna:novel chromosome:V1.0:Gm02:45888235:45899367:-1 gene:GLYMA02G40650 transcript:GLYMA02G40650.2129420.0240103.5
5'     TGAAGCTGCCAGCATGATCTG        3'
||||||||||| ||||||o
3' CTTATGTTCGACGGTCGGACTAGATTCTCCCA 5'
667Glycine maxTTTGGATTGAAGGGAGCTCalignmentplotGSM848964_SC25_unique_seq_countGLYMA06G47000.2 cdna:novel chromosome:V1.0:Gm06:49543622:49548924:-1 gene:GLYMA06G47000 transcript:GLYMA06G47000.221343061.51
5'     TTTGGATTGAAGGGAGCTC          3'
|||||| ||||||||||||
3' CCTTAAACCTCACTTCCCTCGAGACTGAAGTG 5'
668Glycine maxTGCCTGGCTCCCTGTATGCCalignmentplotGSM848964_SC25_unique_seq_countGLYMA10G35481.1 cdna:novel chromosome:V1.0:Gm10:43704337:43707929:1 gene:GLYMA10G35481 transcript:GLYMA10G35481.121609040100
5'     TGCCTGGCTCCCTGTATGCC         3'
||||||||||||||||||||
3' TCGTACGGACCGAGGGACATACGGAGGTCTTG 5'
669Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848964_SC25_unique_seq_countGLYMA16G00971.4 cdna:novel chromosome:V1.0:Gm16:636293:639481:-1 gene:GLYMA16G00971 transcript:GLYMA16G00971.4095504081
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCCAAAGACG 5'
670Glycine maxTCGGACCAGGCTTCATTCCalignmentplotGSM848964_SC25_unique_seq_countGLYMA05G30000.1 cdna:novel chromosome:V1.0:Gm05:35421769:35428492:1 gene:GLYMA05G30000 transcript:GLYMA05G30000.12108004081
5'     TCGGACCAGGCTTCATTCC          3'
o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAGAC 5'
671Glycine maxTCGGACCAGGCTTCATTCCCalignmentplotGSM848964_SC25_unique_seq_countGLYMA05G30000.1 cdna:novel chromosome:V1.0:Gm05:35421769:35428492:1 gene:GLYMA05G30000 transcript:GLYMA05G30000.12108004081.5
5'     TCGGACCAGGCTTCATTCCC         3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5'
672Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848964_SC25_unique_seq_countGLYMA01G44471.1 cdna:known chromosome:V1.0:Gm01:55141915:55148004:-1 gene:GLYMA01G44471 transcript:GLYMA01G44471.1283504081
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' ACTAAGGTGTCCGAAAGAACTTGCCAACGCCG 5'
673Glycine maxTCGGACCAGGCTTCATTCCalignmentplotGSM848964_SC25_unique_seq_countGLYMA09G02750.1 cdna:novel chromosome:V1.0:Gm09:1901637:1907522:-1 gene:GLYMA09G02750 transcript:GLYMA09G02750.1296804081
5'     TCGGACCAGGCTTCATTCC          3'
o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAGAC 5'
674Glycine maxTCGGACCAGGCTTCATTCCCalignmentplotGSM848964_SC25_unique_seq_countGLYMA09G02750.1 cdna:novel chromosome:V1.0:Gm09:1901637:1907522:-1 gene:GLYMA09G02750 transcript:GLYMA09G02750.1296804081.5
5'     TCGGACCAGGCTTCATTCCC         3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5'
675Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848964_SC25_unique_seq_countGLYMA11G01060.1 cdna:novel chromosome:V1.0:Gm11:573836:577693:1 gene:GLYMA11G01060 transcript:GLYMA11G01060.1248604081
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' ACTAAGGTGTCCGAAAGAACTTGCCAACGCCG 5'
676Glycine maxTCGGACCAGGCTTCATTCCalignmentplotGSM848964_SC25_unique_seq_countGLYMA08G21620.3 cdna:novel chromosome:V1.0:Gm08:16441681:16450105:-1 gene:GLYMA08G21620 transcript:GLYMA08G21620.3286604040.5
5'     TCGGACCAGGCTTCATTCC          3'
o||||||||||||||||||
3' CTTAGGCCTGGTCCGAAGTAAGGTCCGTAAAC 5'
677Glycine maxTTGAGCCGTGCCAATATCAalignmentplotGSM848964_SC25_unique_seq_countGLYMA03G03760.2 cdna:novel chromosome:V1.0:Gm03:3581308:3584468:-1 gene:GLYMA03G03760 transcript:GLYMA03G03760.21164204013.33331.5
5'     TTGAGCCGTGCCAATATCA          3'
||||||||o|||||||||
3' CACTAACTCGGCGCGGTTATAGGGAACGCGTA 5'
678Glycine maxATTGAGCCGCGTCAATATCalignmentplotGSM848964_SC25_unique_seq_countGLYMA03G03760.2 cdna:novel chromosome:V1.0:Gm03:3581308:3584468:-1 gene:GLYMA03G03760 transcript:GLYMA03G03760.2216430206.666670.5
5'     ATTGAGCCGCGTCAATATC          3'
|||||||||||o|||||||
3' CCACTAACTCGGCGCGGTTATAGGGAACGCGT 5'
679Glycine maxTGATTGAGCCGTGCCAATATalignmentplotGSM848964_SC25_unique_seq_countGLYMA03G03760.2 cdna:novel chromosome:V1.0:Gm03:3581308:3584468:-1 gene:GLYMA03G03760 transcript:GLYMA03G03760.21164504013.33330.5
5'     TGATTGAGCCGTGCCAATAT         3'
|||||||||||o||||||||
3' GACCACTAACTCGGCGCGGTTATAGGGAACGC 5'
680Glycine maxTGAGCCGTGCCAATATCACalignmentplotGSM848964_SC25_unique_seq_countGLYMA03G03760.2 cdna:novel chromosome:V1.0:Gm03:3581308:3584468:-1 gene:GLYMA03G03760 transcript:GLYMA03G03760.22164101861.5
5'     TGAGCCGTGCCAATATCAC          3'
|||||||o||||||||| |
3' ACTAACTCGGCGCGGTTATAGGGAACGCGTAC 5'
681Glycine maxCAGCCAAGGATGACTTGCCGalignmentplotGSM848964_SC25_unique_seq_countGLYMA02G12185.1 cdna:novel chromosome:V1.0:Gm02:10421144:10423720:1 gene:GLYMA02G12185 transcript:GLYMA02G12185.121116051.251.5
5'     CAGCCAAGGATGACTTGCCG         3'
||||||o||||||||||||
3' GTACATCGGTTTCTACTGAACGGCTTAAATGG 5'
682Glycine maxTGCCTGGCTCCCTGTATGCCalignmentplotGSM848964_SC25_unique_seq_countGLYMA12G08110.1 cdna:novel chromosome:V1.0:Gm12:5840398:5844362:-1 gene:GLYMA12G08110 transcript:GLYMA12G08110.121640040101
5'     TGCCTGGCTCCCTGTATGCC         3'
||||||||||||||||| ||
3' TCGTACGGACCGAGGGACATAGGGACGTCCTC 5'
683Glycine maxTCGGACCAGGCTTCATTCCalignmentplotGSM848964_SC25_unique_seq_countGLYMA15G13640.1 cdna:novel chromosome:V1.0:Gm15:10250637:10256541:-1 gene:GLYMA15G13640 transcript:GLYMA15G13640.1294504041
5'     TCGGACCAGGCTTCATTCC          3'
o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAGAC 5'
684Glycine maxTCGGACCAGGCTTCATTCCCalignmentplotGSM848964_SC25_unique_seq_countGLYMA15G13640.1 cdna:novel chromosome:V1.0:Gm15:10250637:10256541:-1 gene:GLYMA15G13640 transcript:GLYMA15G13640.1294504041.5
5'     TCGGACCAGGCTTCATTCCC         3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5'
685Glycine maxATTGAGCCGCGTCAATATCalignmentplotGSM848964_SC25_unique_seq_countGLYMA01G33270.1 cdna:novel chromosome:V1.0:Gm01:45164207:45167759:-1 gene:GLYMA01G33270 transcript:GLYMA01G33270.1212090206.666670.5
5'     ATTGAGCCGCGTCAATATC          3'
|||||||||||o|||||||
3' CCACTAACTCGGCGCGGTTATAGGGAACGCGT 5'
686Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848964_SC25_unique_seq_countGLYMA17G35100.2 cdna:novel chromosome:V1.0:Gm17:39088426:39092940:1 gene:GLYMA17G35100 transcript:GLYMA17G35100.2211590.014013.33331
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' CGGAAGGTGTCCGAAAGAACTTGCTACCGCAG 5'
687Glycine maxTCCAAAGGGATCGCATTGATCalignmentplotGSM848964_SC25_unique_seq_countGLYMA02G17170.2 cdna:novel chromosome:V1.0:Gm02:15488295:15491581:1 gene:GLYMA02G17170 transcript:GLYMA02G17170.22174102051
5'     TCCAAAGGGATCGCATTGATC        3'
|||||||||||||||||| ||
3' CTGTAGGTTTCCCTAGCGTAAC-AGAGGTCGA 5'
688Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848964_SC25_unique_seq_countGLYMA01G34650.2 cdna:novel chromosome:V1.0:Gm01:47081811:47085604:1 gene:GLYMA01G34650 transcript:GLYMA01G34650.207930206.666671
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' ACAAAGGTGTCCGAAAGAACTTGCTAAAGCTG 5'
689Glycine maxTTGACAGAAGATAGAGAGCACalignmentplotGSM848964_SC25_unique_seq_countGLYMA19G32800.1 cdna:novel chromosome:V1.0:Gm19:40502386:40507238:-1 gene:GLYMA19G32800 transcript:GLYMA19G32800.111139040201
5'     TTGACAGAAGATAGAGAGCAC        3'
||||||||||| |||||||||
3' ACTAAACTGTCTTCTCTCTCTCGTGTCGAGCA 5'
690Glycine maxTTGAGCCGTGCCAATATCAalignmentplotGSM848964_SC25_unique_seq_countGLYMA01G33270.1 cdna:novel chromosome:V1.0:Gm01:45164207:45167759:-1 gene:GLYMA01G33270 transcript:GLYMA01G33270.12120804013.33331.5
5'     TTGAGCCGTGCCAATATCA          3'
||||||||o|||||||||
3' CACTAACTCGGCGCGGTTATAGGGAACGCGTA 5'
691Glycine maxTGCCTGGCTCCCTGTATGCCalignmentplotGSM848964_SC25_unique_seq_countGLYMA12G29720.1 cdna:novel chromosome:V1.0:Gm12:33175269:33178907:-1 gene:GLYMA12G29720 transcript:GLYMA12G29720.101654040400
5'     TGCCTGGCTCCCTGTATGCC         3'
||||||||||||||||||||
3' TCGTACGGACCGAGGGACATACGGACGTCCTC 5'
692Glycine maxTTGAGCCGTGCCAATATCAalignmentplotGSM848964_SC25_unique_seq_countGLYMA01G18040.1 cdna:novel chromosome:V1.0:Gm01:22484145:22487576:-1 gene:GLYMA01G18040 transcript:GLYMA01G18040.111768040201.5
5'     TTGAGCCGTGCCAATATCA          3'
||||||||o|||||||||
3' CACTAACTCGGCGCGGTTATAGGGTACGCGCT 5'
693Glycine maxTGCCTGGCTCCCTGTATGCCalignmentplotGSM848964_SC25_unique_seq_countGLYMA14G33730.1 cdna:novel chromosome:V1.0:Gm14:41889885:41894154:1 gene:GLYMA14G33730 transcript:GLYMA14G33730.111184040200.5
5'     TGCCTGGCTCCCTGTATGCC         3'
||||||||||||||o|||||
3' TAGTACGGACCGAGGGACGTACGGTCGTCCTT 5'
694Glycine maxTGATTGAGCCGTGCCAATATalignmentplotGSM848964_SC25_unique_seq_countGLYMA01G33270.1 cdna:novel chromosome:V1.0:Gm01:45164207:45167759:-1 gene:GLYMA01G33270 transcript:GLYMA01G33270.12121104013.33330.5
5'     TGATTGAGCCGTGCCAATAT         3'
|||||||||||o||||||||
3' GACCACTAACTCGGCGCGGTTATAGGGAACGC 5'
695Glycine maxTGATTGAGCCGTGCCAATATalignmentplotGSM848964_SC25_unique_seq_countGLYMA01G18040.1 cdna:novel chromosome:V1.0:Gm01:22484145:22487576:-1 gene:GLYMA01G18040 transcript:GLYMA01G18040.111771040200.5
5'     TGATTGAGCCGTGCCAATAT         3'
|||||||||||o||||||||
3' AACCACTAACTCGGCGCGGTTATAGGGTACGC 5'
696Glycine maxTCCAAAGGGATCGCATTGATCalignmentplotGSM848964_SC25_unique_seq_countGLYMA10G02630.1 cdna:novel chromosome:V1.0:Gm10:1861030:1864010:-1 gene:GLYMA10G02630 transcript:GLYMA10G02630.12216602051
5'     TCCAAAGGGATCGCATTGATC        3'
|||||||||||||||||| ||
3' CTGTAGGTTTCCCTAGCGTAAC-AGAGGTCGA 5'
697Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848964_SC25_unique_seq_countGLYMA01G35145.1 cdna:novel chromosome:V1.0:Gm01:47696214:47700220:1 gene:GLYMA01G35145 transcript:GLYMA01G35145.10556040201
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' ACTAAGGTGTCCGAAAGAACTTGCCATTGCGG 5'
698Glycine maxTTCCACAGCTTTCTTGAACTalignmentplotGSM848964_SC25_unique_seq_countGLYMA11G12140.5 cdna:novel chromosome:V1.0:Gm11:8671668:8673811:1 gene:GLYMA11G12140 transcript:GLYMA11G12140.506450.04203.333334
5'     TTCCACAGCTTTCTTGAACT         3'
||||| ||||| |||| ||
3' AGACAAGGTTTCGAA-GAACACGAAACTAAAG 5'
699Glycine maxTGCCTGGCTCCCTGTATGCCalignmentplotGSM848964_SC25_unique_seq_countGLYMA04G43350.1 cdna:novel chromosome:V1.0:Gm04:48947065:48951466:1 gene:GLYMA04G43350 transcript:GLYMA04G43350.101540034340.5
5'     TGCCTGGCTCCCTGTATGCC         3'
||||||||||||||o|||||
3' TAGTACGGACCGAGGGACGTACGGTCGTCCTT 5'
700Glycine maxTGAAGCTGCCAGCATGATCTAalignmentplotGSM848964_SC25_unique_seq_countGLYMA14G38940.1 cdna:novel chromosome:V1.0:Gm14:48094947:48103242:-1 gene:GLYMA14G38940 transcript:GLYMA14G38940.1229430.012043
5'     TGAAGCTGCCAGCATGATCTA        3'
||||||||||| |||||||
3' CTTATGTTCGACGGTCGGACTAGATTCTCCCA 5'
701Glycine maxTGCCTGGCTCCCTGTATGCCalignmentplotGSM848964_SC25_unique_seq_countGLYMA13G20382.2 cdna:novel chromosome:V1.0:Gm13:23822784:23826849:-1 gene:GLYMA13G20382 transcript:GLYMA13G20382.22175402050.5
5'     TGCCTGGCTCCCTGTATGCC         3'
||||||||||||||o|||||
3' TCGTACGGACCGAGGGACGTACGGTCGTCCTC 5'
702Glycine maxATGAAGTGTTTGGGGGAACTCalignmentplotGSM848964_SC25_unique_seq_countGLYMA14G34210.2 cdna:novel chromosome:V1.0:Gm14:42623747:42629645:-1 gene:GLYMA14G34210 transcript:GLYMA14G34210.224840.05157.53
5'     ATGAAGTGTTTGGGGGAACTC        3'
||||||||||||| |||||
3' AACAAACTTCACAAACCCACTTGAAACCAGTC 5'
703Glycine maxTCATCATCATCATCATCTTGCalignmentplotGSM848964_SC25_unique_seq_countGLYMA13G42580.1 cdna:novel chromosome:V1.0:Gm13:42527796:42529226:-1 gene:GLYMA13G42580 transcript:GLYMA13G42580.1110070.04111.3752.5
5'     TCATCATCATCATCATCTTGC        3'
||||||o|||||||||| | |
3' TAGTAGTAGTGGTAGTAGTAGTA-GAAGTACG 5'
704Glycine maxATTGAGCCGCGTCAATATCalignmentplotGSM848964_SC25_unique_seq_countGLYMA13G10490.2 cdna:novel chromosome:V1.0:Gm13:12349681:12355036:-1 gene:GLYMA13G10490 transcript:GLYMA13G10490.2021480.02199.53.5
5'     ATTGAGCCGCGTCAATATC          3'
||| ||| || ||||o|||
3' TTGTTAA-TCGCCGAAGTTGTAGTTTTGGAGA 5'
705Glycine maxTTGCCGATTCCACCCATTCCTAalignmentplotGSM848964_SC25_unique_seq_countGLYMA08G12860.1 cdna:novel chromosome:V1.0:Gm08:9404952:9417893:1 gene:GLYMA08G12860 transcript:GLYMA08G12860.1119640.0120104
5'     TTGCCGATTCCACCCATTCCTA       3'
|||||||||||| | |||||
3' AATACACGGCTAAGGTGCGGAAGGAATGTAGT 5'
706Glycine maxCAGAGGAAGCAGCACTTGTACCalignmentplotGSM848964_SC25_unique_seq_countGLYMA02G35260.2 cdna:novel chromosome:V1.0:Gm02:39988375:40003681:1 gene:GLYMA02G35260 transcript:GLYMA02G35260.2259900.0320103.5
5'     CAGAGGAAGCAGCACTTGTACC       3'
||||o|| |||||| ||| |||
3' CCTTGTCTTCTACGTCGTCAACTTGGTAACTA 5'
707Glycine maxTGGAGAAGCAGGGCACGTGCAalignmentplotGSM848964_SC25_unique_seq_countGLYMA05G00930.1 cdna:novel chromosome:V1.0:Gm05:542676:544662:-1 gene:GLYMA05G00930 transcript:GLYMA05G00930.128830.01377.42.5
5'     TGGAGAAGCAGGGCACGTGCA        3'
||||||||||||||||||o
3' CCTAACCTCTTCGTCCCGTGCATTCGGCTTAG 5'
708Glycine maxTGACAGAAGAGAGTGAGCACalignmentplotGSM848964_SC25_unique_seq_countGLYMA01G08056.2 cdna:novel chromosome:V1.0:Gm01:9051047:9057050:-1 gene:GLYMA01G08056 transcript:GLYMA01G08056.22128401531
5'     TGACAGAAGAGAGTGAGCAC         3'
||||||||||||| ||||||
3' CTAGACTGTCTTCTCTCTCTCGTGTCGAACTA 5'
709Glycine maxTGGAGAAGCAGGGCACGTGCAalignmentplotGSM848964_SC25_unique_seq_countGLYMA08G18470.1 cdna:known chromosome:V1.0:Gm08:13867947:13872796:1 gene:GLYMA08G18470 transcript:GLYMA08G18470.1073001262
5'     TGGAGAAGCAGGGCACGTGCA        3'
|||||||||||||||| |||
3' TTTTACCTCTTCGTCCCGTGAACGAGTTTGAG 5'
710Glycine maxTGAAGCTGCCAGCATGATCTGAalignmentplotGSM848964_SC25_unique_seq_countGLYMA13G29320.2 cdna:novel chromosome:V1.0:Gm13:32246000:32253106:1 gene:GLYMA13G29320 transcript:GLYMA13G29320.2133560.0540104
5'     TGAAGCTGCCAGCATGATCTGA       3'
||||||||||| |||||| |
3' TTTATGTTCGACGGTCGGACTAGAGTGTCCCA 5'
711Glycine maxTTGACAGAAGATAGAGAGCACalignmentplotGSM848964_SC25_unique_seq_countGLYMA18G00903.1 cdna:novel chromosome:V1.0:Gm18:426939:431809:1 gene:GLYMA18G00903 transcript:GLYMA18G00903.102437040401
5'     TTGACAGAAGATAGAGAGCAC        3'
||||||||||| |||||||||
3' AAGCAACTGTCTTCTCTCTCTCGTGCCAATTG 5'
712Glycine maxTTGAGCCGTGCCAATATCAalignmentplotGSM848964_SC25_unique_seq_countGLYMA11G17490.1 cdna:novel chromosome:V1.0:Gm11:13613694:13616986:1 gene:GLYMA11G17490 transcript:GLYMA11G17490.111658040201.5
5'     TTGAGCCGTGCCAATATCA          3'
||||||||o|||||||||
3' CACTAACTCGGCGCGGTTATAGGGCACGCGCT 5'
713Glycine maxTTTGGATTGAAGGGAGCTCalignmentplotGSM848964_SC25_unique_seq_countGLYMA13G25716.2 cdna:novel chromosome:V1.0:Gm13:28929349:28934215:1 gene:GLYMA13G25716 transcript:GLYMA13G25716.2218300.03112.22
5'     TTTGGATTGAAGGGAGCTC          3'
||||| ||||||||||||
3' CCTATAACCTCACTTCCCTCGAGGTTGAAGTA 5'
714Glycine maxTGATTGAGCCGTGCCAATATalignmentplotGSM848964_SC25_unique_seq_countGLYMA11G17490.1 cdna:novel chromosome:V1.0:Gm11:13613694:13616986:1 gene:GLYMA11G17490 transcript:GLYMA11G17490.111661040200.5
5'     TGATTGAGCCGTGCCAATAT         3'
|||||||||||o||||||||
3' AACCACTAACTCGGCGCGGTTATAGGGCACGC 5'
715Glycine maxTGGAGAAGCAGGGCACGTGCAalignmentplotGSM848964_SC25_unique_seq_countGLYMA06G21020.1 cdna:known chromosome:V1.0:Gm06:17431771:17433898:1 gene:GLYMA06G21020 transcript:GLYMA06G21020.1211060377.42.5
5'     TGGAGAAGCAGGGCACGTGCA        3'
||||||||||||||||||o
3' CCTAACCTCTTCGTCCCGTGCATTCGTCTTAG 5'
716Glycine maxTGAAGCTGCCAGCATGATCTalignmentplotGSM848964_SC25_unique_seq_countGLYMA15G09750.2 cdna:novel chromosome:V1.0:Gm15:6969486:6976414:-1 gene:GLYMA15G09750 transcript:GLYMA15G09750.2132390.0340103
5'     TGAAGCTGCCAGCATGATCT         3'
||||||||||| ||||||
3' TTTATGTTCGACGGTCGGACTAGAGTGTCCCA 5'
717Glycine maxCAATCAGAACGTGACACGTGAalignmentplotGSM848964_SC25_unique_seq_countGLYMA06G02900.1 cdna:novel chromosome:V1.0:Gm06:2007259:2009448:-1 gene:GLYMA06G02900 transcript:GLYMA06G02900.1214910.0220203
5'     CAATCAGAACGTGACACGTGA        3'
|||o|||||||o||| ||| |
3' GGTCGTTGGTCTTGCGCTG-GCAGTGCTTCGT 5'
718Glycine maxTTGACAGAAGATAGAGAGCACalignmentplotGSM848964_SC25_unique_seq_countGLYMA04G32002.1 cdna:novel chromosome:V1.0:Gm04:36451982:36456753:1 gene:GLYMA04G32002 transcript:GLYMA04G32002.121937040102
5'     TTGACAGAAGATAGAGAGCAC        3'
|||||||||| |||||||||
3' ACTCTACTGTCTTCTCTCTCTCGTGTCGGTCT 5'
719Glycine maxTTGACAGAAGATAGAGAGCACalignmentplotGSM848964_SC25_unique_seq_countGLYMA17G08840.2 cdna:novel chromosome:V1.0:Gm17:6526544:6532020:-1 gene:GLYMA17G08840 transcript:GLYMA17G08840.221901040102
5'     TTGACAGAAGATAGAGAGCAC        3'
|||||||||| |||||||||
3' ACTCTACTGTCTTCTCTCTCTCGTGTTGTTCT 5'
720Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848964_SC25_unique_seq_countGLYMA09G34565.1 cdna:novel chromosome:V1.0:Gm09:40925699:40929850:1 gene:GLYMA09G34565 transcript:GLYMA09G34565.11610040201
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' ACTAAGGTGTCCGAAAGAACTTGCCATTGCTG 5'
721Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848964_SC25_unique_seq_countGLYMA04G40880.2 cdna:novel chromosome:V1.0:Gm04:46789378:46792963:-1 gene:GLYMA04G40880 transcript:GLYMA04G40880.20111304081
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCCCCTGCCG 5'
722Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848964_SC25_unique_seq_countGLYMA19G40610.1 cdna:novel chromosome:V1.0:Gm19:46975408:46981467:-1 gene:GLYMA19G40610 transcript:GLYMA19G40610.1011530.01405.714293
5'     TTCCACAGCTTTCTTGA-AC         3'
|||||| ||||| |||| ||
3' CAAGAAGGTGACGAAAAAACTATGGAAGTACC 5'
723Glycine maxTGCCTGGCTCCCTGTATGCCalignmentplotGSM848964_SC25_unique_seq_countGLYMA13G02410.1 cdna:novel chromosome:V1.0:Gm13:2276691:2281351:-1 gene:GLYMA13G02410 transcript:GLYMA13G02410.101530040400.5
5'     TGCCTGGCTCCCTGTATGCC         3'
||||||||||||||o|||||
3' TAGTACGGACCGAGGGACGTACGGTCGTCCTT 5'
724Glycine maxTTCCACAGCTTTCTTGAACTGalignmentplotGSM848964_SC25_unique_seq_countGLYMA01G04610.4 cdna:novel chromosome:V1.0:Gm01:4217441:4221353:-1 gene:GLYMA01G04610 transcript:GLYMA01G04610.423970.0594.53
5'    TTCCAC-AGCTTTCTTGAACTG        3'
o||| | |||||||o|||||||
3' AACGAGGCGTTCGAAAGGACTTGACCAAAGAG 5'
725Glycine maxTCAAAGGGAGTTGTAGGGGAAalignmentplotGSM848964_SC25_unique_seq_countGLYMA14G24860.1 cdna:known chromosome:V1.0:Gm14:29966155:29973516:1 gene:GLYMA14G24860 transcript:GLYMA14G24860.111180.0140403.5
5'     TCAAAGGGAGTTGTAGGGGAA        3'
|||||||||||| ||o|||
3' ATGCCGTTTCCCTCAACTTCTCCTAGGAGTTT 5'
726Glycine maxTCCAAAGGGATCGCATTGATCalignmentplotGSM848964_SC25_unique_seq_countGLYMA03G36770.1 cdna:novel chromosome:V1.0:Gm03:43630257:43634178:1 gene:GLYMA03G36770 transcript:GLYMA03G36770.12180603316.51
5'     TCCAAAGGGATCGCATTGATC        3'
|||||||||||||||||| ||
3' CTGTAGGTTTCCCTAGCGTAAC-AGAGGTCGA 5'
727Glycine maxCGATTACCAGAAGGCTTATTAGalignmentplotGSM848964_SC25_unique_seq_countGLYMA14G35070.1 cdna:novel chromosome:V1.0:Gm14:43792798:43799059:-1 gene:GLYMA14G35070 transcript:GLYMA14G35070.1215790.0420104
5'     CGATTACCAGAAGGCTTATTAG       3'
||o| ||||||||||o|| ||
3' TTGAACTGACGGTCTTCCGAGTA-TCAAACGT 5'
728Glycine maxTCGGACCAGGCTTCATTCCalignmentplotGSM848964_SC25_unique_seq_countGLYMA06G09100.1 cdna:novel chromosome:V1.0:Gm06:6696969:6703161:1 gene:GLYMA06G09100 transcript:GLYMA06G09100.129570.014041
5'     TCGGACCAGGCTTCATTCC          3'
o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTCCGTAAAC 5'
729Glycine maxTCGGACCAGGCTTCATTCCCalignmentplotGSM848964_SC25_unique_seq_countGLYMA06G09100.1 cdna:novel chromosome:V1.0:Gm06:6696969:6703161:1 gene:GLYMA06G09100 transcript:GLYMA06G09100.129570.014041.5
5'     TCGGACCAGGCTTCATTCCC         3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAAA 5'
730Glycine maxTGCCTGGCTCCCTGTATGCCalignmentplotGSM848964_SC25_unique_seq_countGLYMA10G06080.2 cdna:novel chromosome:V1.0:Gm10:4819433:4824893:-1 gene:GLYMA10G06080 transcript:GLYMA10G06080.22201002050.5
5'     TGCCTGGCTCCCTGTATGCC         3'
||||||||||||||o|||||
3' TCGTACGGACCGAGGGACGTACGGTCGTCCAC 5'
731Glycine maxTTGACAGAAGATAGAGAGCACalignmentplotGSM848964_SC25_unique_seq_countGLYMA02G30670.2 cdna:novel chromosome:V1.0:Gm02:32711340:32716829:-1 gene:GLYMA02G30670 transcript:GLYMA02G30670.20962040401
5'     TTGACAGAAGATAGAGAGCAC        3'
||||||||||| |||||||||
3' ACTGAACTGTCTTCTCTCTCTCGTGTCAAACT 5'
732Glycine maxTTTGGATTGAAGGGAGCTCalignmentplotGSM848964_SC25_unique_seq_countGLYMA15G35860.4 cdna:novel chromosome:V1.0:Gm15:40661766:40666367:1 gene:GLYMA15G35860 transcript:GLYMA15G35860.4219300.03112.22
5'     TTTGGATTGAAGGGAGCTC          3'
||||| ||||||||||||
3' CCTATAACCTCACTTCCCTCGAGGTTGAAGTG 5'
733Glycine maxTGAAGCTGCCAGCATGATCTTalignmentplotGSM848964_SC25_unique_seq_countGLYMA15G09750.3 cdna:novel chromosome:V1.0:Gm15:6969486:6976414:-1 gene:GLYMA15G09750 transcript:GLYMA15G09750.3132360.0340103.5
5'     TGAAGCTGCCAGCATGATCTT        3'
||||||||||| ||||||o
3' TTTATGTTCGACGGTCGGACTAGAGTGTCCCA 5'
734Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848964_SC25_unique_seq_countGLYMA06G13960.2 cdna:novel chromosome:V1.0:Gm06:11041407:11044426:1 gene:GLYMA06G13960 transcript:GLYMA06G13960.2271304081
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCCCCTGCCG 5'
735Glycine maxTGACAGAAGAGAGTGAGCACalignmentplotGSM848964_SC25_unique_seq_countGLYMA02G30670.2 cdna:novel chromosome:V1.0:Gm02:32711340:32716829:-1 gene:GLYMA02G30670 transcript:GLYMA02G30670.22961020201
5'     TGACAGAAGAGAGTGAGCAC         3'
||||||||||||| ||||||
3' CTGAACTGTCTTCTCTCTCTCGTGTCAAACTC 5'
736Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848964_SC25_unique_seq_countGLYMA02G02240.1 cdna:novel chromosome:V1.0:Gm02:1593908:1598929:-1 gene:GLYMA02G02240 transcript:GLYMA02G02240.103360.0440203
5'     TTCCACAGCTTTCTTGAAC          3'
||||||||||| ||| ||
3' GGCTCAGGTGTCGAAAAAACATGCTCAGGCGT 5'
737Glycine maxTGGAGAAGCAGGGCACGTGCAalignmentplotGSM848964_SC25_unique_seq_countGLYMA12G26190.1 cdna:novel chromosome:V1.0:Gm12:29514536:29517365:1 gene:GLYMA12G26190 transcript:GLYMA12G26190.12879020202
5'     TGGAGAAGCAGGGCACGTGCA        3'
|||||||o||||o|||||||
3' TACCACCTCTTTGTCCTGTGCACGAGGGAAAC 5'
738Glycine maxTCCAAAGGGATCGCATTGATCalignmentplotGSM848964_SC25_unique_seq_countGLYMA19G39420.1 cdna:novel chromosome:V1.0:Gm19:46102119:46105994:1 gene:GLYMA19G39420 transcript:GLYMA19G39420.12178803316.51
5'     TCCAAAGGGATCGCATTGATC        3'
|||||||||||||||||| ||
3' CTGTAGGTTTCCCTAGCGTAAC-AGAGGTCGA 5'
739Glycine maxTTAATCAAGGAAATCACGGTCGalignmentplotGSM848964_SC25_unique_seq_countGLYMA08G08430.1 cdna:known chromosome:V1.0:Gm08:6040931:6043635:1 gene:GLYMA08G08430 transcript:GLYMA08G08430.123250.0120203.5
5'     TTAATCAAGGAAATCACGGTCG       3'
o||||||||| |||| |||||
3' ACGTCGTTAGTTCCTGTAGTCCCAGCCTTTGC 5'
740Glycine maxTCGCTTGGTGCAGGTCGGGAAalignmentplotGSM848964_SC25_unique_seq_countGLYMA08G08180.3 cdna:known chromosome:V1.0:Gm08:5840900:5843303:1 gene:GLYMA08G08180 transcript:GLYMA08G08180.329500.052173.5
5'    TCGCTTGG-TGCAGGTCGGGAA        3'
| |||||| |||||oo|o||||
3' ATCAACGAACCGACGTCTGGTCCTTGCTCTCT 5'
741Glycine maxTGCCTGGCTCCCTGTATGCCalignmentplotGSM848964_SC25_unique_seq_countGLYMA13G40030.1 cdna:novel chromosome:V1.0:Gm13:40591013:40594198:1 gene:GLYMA13G40030 transcript:GLYMA13G40030.111779040400
5'     TGCCTGGCTCCCTGTATGCC         3'
||||||||||||||||||||
3' TCTTACGGACCGAGGGACATACGGACGTCCTC 5'
742Glycine maxTGAAGCTGCCAGCATGATCTalignmentplotGSM848964_SC25_unique_seq_countGLYMA19G33690.1 cdna:novel chromosome:V1.0:Gm19:41283582:41298735:-1 gene:GLYMA19G33690 transcript:GLYMA19G33690.1010810.0420203.5
5'     TGAAGCTGCCAGCATGATCT         3'
|||o|||||||||| |||
3' AGGTCCTTTGACGGTCGTAGGAGAAGGGGGAC 5'
743Glycine maxTTGACAGAAGATAGAGAGCACalignmentplotGSM848964_SC25_unique_seq_countGLYMA11G02260.1 cdna:novel chromosome:V1.0:Gm11:1409681:1414565:1 gene:GLYMA11G02260 transcript:GLYMA11G02260.118680.0320203.5
5'     TTGACAGAAGATAGAGAGCAC        3'
|||| ||||||o|||||| |
3' CCCGAACT-TCTTCTGTCTCTCTGGCTTCAGG 5'
744Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848964_SC25_unique_seq_countGLYMA17G05800.1 cdna:novel chromosome:V1.0:Gm17:4086935:4089150:1 gene:GLYMA17G05800 transcript:GLYMA17G05800.1042204081
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCCAAAAAGG 5'
745Glycine maxTGCCTGGCTCCCTGTATGCCalignmentplotGSM848964_SC25_unique_seq_countGLYMA19G36571.1 cdna:novel chromosome:V1.0:Gm19:43842474:43846765:-1 gene:GLYMA19G36571 transcript:GLYMA19G36571.112324020200
5'     TGCCTGGCTCCCTGTATGCC         3'
||||||||||||||||||||
3' TCGTACGGACCGAGGGACATACGGTCGTCCTC 5'
746Glycine maxTTTGGATTGAAGGGAGCTCTalignmentplotGSM848964_SC25_unique_seq_countGLYMA13G25716.1 cdna:novel chromosome:V1.0:Gm13:28928845:28934215:1 gene:GLYMA13G25716 transcript:GLYMA13G25716.1213400.04112.22.5
5'     TTTGGATTGAAGGGAGCTCT         3'
||||| ||||||||||||o
3' CCTATAACCTCACTTCCCTCGAGGTTGAAGTA 5'
747Glycine maxTGTGTTCTCAGGTCGCCCCTalignmentplotGSM848964_SC25_unique_seq_countGLYMA03G40280.2 cdna:novel chromosome:V1.0:Gm03:46076955:46080391:1 gene:GLYMA03G40280 transcript:GLYMA03G40280.221560.0352.52.5
5'     TGTGTTCTCAGGTCGCCCCT         3'
|||| ||||||| |o|||||
3' AGTTACACTAGAGTCCCGTGGGGAATCTGTCT 5'
748Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848964_SC25_unique_seq_countGLYMA09G07990.1 cdna:novel chromosome:V1.0:Gm09:7003261:7005873:-1 gene:GLYMA09G07990 transcript:GLYMA09G07990.1248604081
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCTAAGAAGG 5'
749Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848964_SC25_unique_seq_countGLYMA09G17255.1 cdna:novel chromosome:V1.0:Gm09:21116187:21116784:1 gene:GLYMA09G17255 transcript:GLYMA09G17255.112840.0431.52.5
5'     TTCCACAGCTTTCTTGAAC          3'
o||||||||||||||| |
3' AACCGAGGTGTCGAAAGAACCAGACAAAGAAC 5'
750Glycine maxTATTGGCTAGAGATAAGACAAAGAalignmentplotGSM848964_SC25_unique_seq_countGLYMA01G37790.1 cdna:known chromosome:V1.0:Gm01:50071777:50075271:-1 gene:GLYMA01G37790 transcript:GLYMA01G37790.121190.01199.53.5
5'    TATTGGC-TAGAGATAAGACAAAGA     3'
| |||o| ||||||||||| |||||
3' GGTACAACTGAATCTCTATTCTCTTTCTCAGC 5'
751Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848964_SC25_unique_seq_countGLYMA10G07790.2 cdna:novel chromosome:V1.0:Gm10:6583388:6586706:1 gene:GLYMA10G07790 transcript:GLYMA10G07790.20646032321
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' AACAAGGTGTCCGAAAGAACTTGCCAAGGCCG 5'
752Glycine maxTGCCTGGCTCCCTGTATGCCalignmentplotGSM848964_SC25_unique_seq_countGLYMA09G28360.2 cdna:novel chromosome:V1.0:Gm09:35348339:35353261:1 gene:GLYMA09G28360 transcript:GLYMA09G28360.222521040100.5
5'     TGCCTGGCTCCCTGTATGCC         3'
||||||||||||o|||||||
3' TCGTACGGACCGAGGGGCATACGGACGTCTGG 5'
753Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848964_SC25_unique_seq_countGLYMA08G04800.1 cdna:known chromosome:V1.0:Gm08:3411980:3414173:-1 gene:GLYMA08G04800 transcript:GLYMA08G04800.116920.0520103
5'     TTCCACAGCTTTCTTGAAC          3'
||| |||||| |||||||
3' TACCAAGTTGTCGACAGAACTTCTCTTCCTGT 5'
754Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848964_SC25_unique_seq_countGLYMA11G11826.1 cdna:novel chromosome:V1.0:Gm11:8435940:8440047:1 gene:GLYMA11G11826 transcript:GLYMA11G11826.1061504081
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' ACTAAGGTGTCCGAAAGAACTTGCCAACGCCG 5'
755Glycine maxTGGAGAAGCAGGGCACGTGCAalignmentplotGSM848964_SC25_unique_seq_countGLYMA13G34950.1 cdna:novel chromosome:V1.0:Gm13:36439653:36442281:1 gene:GLYMA13G34950 transcript:GLYMA13G34950.121066073.52
5'     TGGAGAAGCAGGGCACGTGCA        3'
|||||||o||||o|||||||
3' TAACACCTCTTTGTCCTGTGCACGAGGAAAAA 5'
756Glycine maxAGGGATAGGTAAAACAATGACalignmentplotGSM848964_SC25_unique_seq_countGLYMA02G08415.1 cdna:novel chromosome:V1.0:Gm02:6599275:6600860:1 gene:GLYMA02G08415 transcript:GLYMA02G08415.12960882.5
5'     AGGGATAGGTAAAACAATGAC        3'
||o|||||||||||||oo||
3' AACCACCTTATCCATTTTGTTGTTGATTGATA 5'
757Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848964_SC25_unique_seq_countGLYMA03G22874.1 cdna:novel chromosome:V1.0:Gm03:29537652:29541762:1 gene:GLYMA03G22874 transcript:GLYMA03G22874.104920.01405.714292
5'     TTCCACAGCTTTCTTGAAC          3'
|||||| |||||||||| |
3' CAAGAAGGTGACGAAAGAACTAGGTGAATTAT 5'
758Glycine maxTCGGACCAGGCTTCATTCCalignmentplotGSM848964_SC25_unique_seq_countGLYMA08G13110.1 cdna:novel chromosome:V1.0:Gm08:9562597:9569062:1 gene:GLYMA08G13110 transcript:GLYMA08G13110.12109204081
5'     TCGGACCAGGCTTCATTCC          3'
o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAAAC 5'
759Glycine maxTCGGACCAGGCTTCATTCCCalignmentplotGSM848964_SC25_unique_seq_countGLYMA08G13110.1 cdna:novel chromosome:V1.0:Gm08:9562597:9569062:1 gene:GLYMA08G13110 transcript:GLYMA08G13110.12109204081.5
5'     TCGGACCAGGCTTCATTCCC         3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAAA 5'
760Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848964_SC25_unique_seq_countGLYMA13G21625.1 cdna:novel chromosome:V1.0:Gm13:25212900:25216570:1 gene:GLYMA13G21625 transcript:GLYMA13G21625.10604040401
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' AACAAGGTGTCCGAAAGAACTTGCCAAAGCCG 5'
761Glycine maxCAGTGCATGACTATATCGCCAGalignmentplotGSM848964_SC25_unique_seq_countGLYMA19G28780.1 cdna:novel chromosome:V1.0:Gm19:36366963:36371834:-1 gene:GLYMA19G28780 transcript:GLYMA19G28780.1055501893.5
5'     CAGTGCATGACTATATCGCCAG       3'
||||||| |||o|| | |||||
3' CGAGGTCACGT-CTGGTAGAACGGTCTACGTT 5'
762Glycine maxTGAAGCTGCCAGCATGATCTAalignmentplotGSM848964_SC25_unique_seq_countGLYMA08G00420.2 cdna:known chromosome:V1.0:Gm08:140729:147970:-1 gene:GLYMA08G00420 transcript:GLYMA08G00420.215490.0120203.5
5'     TGAAGCTGCCAGCATGATCTA        3'
||| | ||||||||||| |o|
3' TCTAACTCCTACGGTCGTACTTGGTACTGGCC 5'
763Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848964_SC25_unique_seq_countGLYMA07G04290.1 cdna:novel chromosome:V1.0:Gm07:3149413:3151946:-1 gene:GLYMA07G04290 transcript:GLYMA07G04290.1272804081
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCCAAAGACG 5'
764Glycine maxTTTGGATTGAAGGGAGCTCalignmentplotGSM848964_SC25_unique_seq_countGLYMA04G15150.3 cdna:novel chromosome:V1.0:Gm04:15669460:15674719:1 gene:GLYMA04G15150 transcript:GLYMA04G15150.3213550.0161.51
5'     TTTGGATTGAAGGGAGCTC          3'
|||||| ||||||||||||
3' CCTTAAACCTCACTTCCCTCGAGACTGAAACG 5'
765Glycine maxCAGCCAAGGATGACTTGCCGalignmentplotGSM848964_SC25_unique_seq_countGLYMA14G01360.1 cdna:novel chromosome:V1.0:Gm14:766608:770587:1 gene:GLYMA14G01360 transcript:GLYMA14G01360.1215550115.51.5
5'     CAGCCAAGGATGACTTGCCG         3'
||||||||o|||| ||||||
3' TTGTGTCGGTTCTTACTAAACGGCGAACTGTA 5'
766Glycine maxTCGGACCAGGCTTCATTCCCCalignmentplotGSM848964_SC25_unique_seq_countGLYMA05G30080.4 cdna:novel chromosome:V1.0:Gm05:35506087:35526765:1 gene:GLYMA05G30080 transcript:GLYMA05G30080.4162400.0320104
5'     TCGGACCAGGCTTCATTCCCC        3'
||o||||||| o|||||| |
3' GCTCAGTCTGGTCCCTGGTAAGGTGAGGTGAA 5'
767Glycine maxTGGAGAAGCAGGGCACGTGCAalignmentplotGSM848964_SC25_unique_seq_countGLYMA15G40510.1 cdna:known chromosome:V1.0:Gm15:47503232:47508060:-1 gene:GLYMA15G40510 transcript:GLYMA15G40510.1173401262
5'     TGGAGAAGCAGGGCACGTGCA        3'
|||||||||||||||| |||
3' TTTTACCTCTTCGTCCCGTGAACGAGTTTGAG 5'
768Glycine maxTGAAGCTGCCAGCATGATCTalignmentplotGSM848964_SC25_unique_seq_countGLYMA15G00770.2 cdna:novel chromosome:V1.0:Gm15:462686:466246:-1 gene:GLYMA15G00770 transcript:GLYMA15G00770.211634040402
5'     TGAAGCTGCCAGCATGATCT         3'
||||||||||||| || |||
3' GTAGACTTCGACGGTCG-ACAAGATGGCAGGA 5'
769Glycine maxAAGCCAAGGATGACTTGCCGAalignmentplotGSM848964_SC25_unique_seq_countGLYMA03G36140.6 cdna:known chromosome:V1.0:Gm03:43160314:43165126:-1 gene:GLYMA03G36140 transcript:GLYMA03G36140.6214200.0420.6666673
5'     AAGCCAAGGATGACTTGCCGA        3'
||||||||||||| |||||
3' GTAGTTCGGTTCCTACTCAACGGAAGTCAATG 5'
770Glycine maxTGAAGCTGCCAGCATGATCTalignmentplotGSM848964_SC25_unique_seq_countGLYMA18G07890.2 cdna:novel chromosome:V1.0:Gm18:6636288:6639893:1 gene:GLYMA18G07890 transcript:GLYMA18G07890.207160.0440204
5'     TGAAGCTGCCAGCATGATCT         3'
| ||||||||| |||| o|o
3' TGGTA-TTCGACGGTAGTACGGGGGTATTATG 5'
771Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848964_SC25_unique_seq_countGLYMA15G19460.1 cdna:novel chromosome:V1.0:Gm15:16759912:16762499:-1 gene:GLYMA15G19460 transcript:GLYMA15G19460.10450028281
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCTAAGAAGG 5'
772Glycine maxTTGACAGAAGATAGAGAGCACalignmentplotGSM848964_SC25_unique_seq_countGLYMA03G29901.1 cdna:novel chromosome:V1.0:Gm03:37904151:37914523:-1 gene:GLYMA03G29901 transcript:GLYMA03G29901.111149040201
5'     TTGACAGAAGATAGAGAGCAC        3'
||||||||||| |||||||||
3' ACTAAACTGTCTTCTCTCTCTCGTGTCGAGCT 5'
773Glycine maxTTGGACTGAAGGGAGCTCCTalignmentplotGSM848964_SC25_unique_seq_countGLYMA13G29160.1 cdna:novel chromosome:V1.0:Gm13:32078442:32088927:-1 gene:GLYMA13G29160 transcript:GLYMA13G29160.1222960.031472.5
5'     TTGGACTGAAGGGAGCTCCT         3'
||||||||||||| |o|||
3' TCTTAACCTGACTTCCCAGGGGGATAACAACA 5'
774Glycine maxTTGGACTGAAGGGAGCTCCCTalignmentplotGSM848964_SC25_unique_seq_countGLYMA13G29160.1 cdna:novel chromosome:V1.0:Gm13:32078442:32088927:-1 gene:GLYMA13G29160 transcript:GLYMA13G29160.1222960.041473
5'     TTGGACTGAAGGGAGCTCCCT        3'
||||||||||||| | ||||
3' TCTTAACCTGACTTCCCAGG-GGGATAACAAC 5'
775Glycine maxCAGAGGAAGCAGCACTTGTACCalignmentplotGSM848964_SC25_unique_seq_countGLYMA11G09980.1 cdna:known chromosome:V1.0:Gm11:7137966:7142199:1 gene:GLYMA11G09980 transcript:GLYMA11G09980.11300.0220204
5'     CAGAGGAAGCAGCACTTG-TACC      3'
|||||| ||||| ||| | ||||
3' CAGCGTCTCCCTCGTCATGATCGATGGAGAAG 5'
776Glycine maxCAGAGGAAGCAGCACTTGTACCalignmentplotGSM848964_SC25_unique_seq_countGLYMA10G10154.1 cdna:novel chromosome:V1.0:Gm10:9750456:9776568:-1 gene:GLYMA10G10154 transcript:GLYMA10G10154.1259180.0320103.5
5'     CAGAGGAAGCAGCACTTGTACC       3'
||||o|| |||||| ||| |||
3' CCTTGTCTTCTACGTCGTCAACTTGGTAACAA 5'
777Glycine maxTAACAAGTGGGTTTGTTGACTGalignmentplotGSM848964_SC25_unique_seq_countGLYMA05G30140.1 cdna:known chromosome:V1.0:Gm05:35569728:35575763:-1 gene:GLYMA05G30140 transcript:GLYMA05G30140.1214890.0220203
5'     TAACAAGTGGGTTTGTTGACTG       3'
o | |||||||||o||||||||
3' AACAGGT-TTCACCCAAGCAACTGACCAAGTA 5'
778Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848964_SC25_unique_seq_countGLYMA12G01730.2 cdna:novel chromosome:V1.0:Gm12:1061212:1065353:1 gene:GLYMA12G01730 transcript:GLYMA12G01730.2057604081
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' ACTAAGGTGTCCGAAAGAACTTGCCAACGCCG 5'
779Glycine maxTGAAGCTGCCAGCATGATCTAalignmentplotGSM848964_SC25_unique_seq_countGLYMA18G05330.1 cdna:novel chromosome:V1.0:Gm18:4066963:4074557:1 gene:GLYMA18G05330 transcript:GLYMA18G05330.1229260.0520203
5'     TGAAGCTGCCAGCATGATCTA        3'
||||||||||| |||||||
3' CTTGTGTTCGACGGTCGGACTAGATTCTCCCA 5'
780Glycine maxCAAACCTCCGTAGCCTGTATCalignmentplotGSM848964_SC25_unique_seq_countGLYMA15G06570.1 cdna:novel chromosome:V1.0:Gm15:4643944:4647571:-1 gene:GLYMA15G06570 transcript:GLYMA15G06570.1226450.0120203
5'     CAAACCTCCGTAGCCTGTATC        3'
|||| |||||o|o||| ||||
3' CATAGTTTTGAGGCGTTGGA-ATAGTGTCAGG 5'
781Glycine maxTTGACAGAAGATAGAGAGCACalignmentplotGSM848964_SC25_unique_seq_countGLYMA19G02020.1 cdna:novel chromosome:V1.0:Gm19:1729371:1736065:-1 gene:GLYMA19G02020 transcript:GLYMA19G02020.111019020202.5
5'     TTGACAGAAGATAGAGAGCAC        3'
|||| ||||| ||||o|||||
3' TTCGAACTATCTTCCATCTTTCGTGTGTGGAA 5'
782Glycine maxCAATTGGATCGGTCCAACCGGCalignmentplotGSM848964_SC25_unique_seq_countGLYMA13G25480.1 cdna:novel chromosome:V1.0:Gm13:28726715:28731381:1 gene:GLYMA13G25480 transcript:GLYMA13G25480.127990.0120203.5
5'     CAATTGGATCGGTCCAACCGGC       3'
|||o||||o|o|o||| ||o||
3' CCTAGTTGACCTGGTCGGGTCGGTCGTGGTGG 5'
783Glycine maxTCTCATTCCATACATCGTCTGalignmentplotGSM848964_SC25_unique_seq_countGLYMA04G29220.3 cdna:novel chromosome:V1.0:Gm04:33301245:33307654:-1 gene:GLYMA04G29220 transcript:GLYMA04G29220.321108041.333332.5
5'     TCTCATTCCATACATCGTCTG        3'
o|||||||||o|||||o||oo
3' GCTAGGAGTAAGGTGTGTAGTAGGTCGTGTTC 5'
784Glycine maxTCGGACCAGGCTTCATTCCCCalignmentplotGSM848964_SC25_unique_seq_countGLYMA16G17090.5 cdna:novel chromosome:V1.0:Gm16:18358481:18361869:1 gene:GLYMA16G17090 transcript:GLYMA16G17090.5110590.042054
5'     TCGGACCAGGCTTCATTCCCC        3'
|| |||| |||||| |||| |
3' GGGAAGACTGG-CCGAAGGAAGGAGGCGTATG 5'
785Glycine maxTGGAGAAGCAGGGCACGTGCAalignmentplotGSM848964_SC25_unique_seq_countGLYMA17G10970.1 cdna:known chromosome:V1.0:Gm17:8247753:8249783:1 gene:GLYMA17G10970 transcript:GLYMA17G10970.129180.01377.42.5
5'     TGGAGAAGCAGGGCACGTGCA        3'
||||||||||||||||||o
3' CCTAACCTCTTCGTCCCGTGCATTCGGCATAG 5'
786Glycine maxTCAAAGGGAGTTGTAGGGGAAalignmentplotGSM848964_SC25_unique_seq_countGLYMA13G09530.2 cdna:novel chromosome:V1.0:Gm13:10957230:10963280:-1 gene:GLYMA13G09530 transcript:GLYMA13G09530.213690.0240203.5
5'     TCAAAGGGAGTTGTAGGGGAA        3'
|||||||||||| ||o|||
3' ATGCCGTTTCCCTCAACTTCTCCTAGAAGTTT 5'
787Glycine maxTGAAGCTGCCAGCATGATCTTalignmentplotGSM848964_SC25_unique_seq_countGLYMA01G43960.4 cdna:novel chromosome:V1.0:Gm01:54800646:54805855:-1 gene:GLYMA01G43960 transcript:GLYMA01G43960.4228190.052043
5'     TGAAGCTGCCAGCATGATCTT        3'
|o|||||o|||||| || |||
3' CGGTATTTCGATGGTCGTTCTCGAAAGTCTAG 5'
788Glycine maxTGGAGAAGCAGGGCACGTGCAalignmentplotGSM848964_SC25_unique_seq_countGLYMA12G35530.1 cdna:novel chromosome:V1.0:Gm12:38654911:38657537:-1 gene:GLYMA12G35530 transcript:GLYMA12G35530.12995073.52
5'     TGGAGAAGCAGGGCACGTGCA        3'
|||||||o||||o|||||||
3' TAACACCTCTTTGTCCTGTGCACGAGGAAAAA 5'
789Glycine maxTCGGACCAGGCTTCATTCCalignmentplotGSM848964_SC25_unique_seq_countGLYMA05G21726.1 cdna:novel chromosome:V1.0:Gm05:26595908:26602630:1 gene:GLYMA05G21726 transcript:GLYMA05G21726.1219304040.5
5'     TCGGACCAGGCTTCATTCC          3'
o||||||||||||||||||
3' CTTAGGCCTGGTCCGAAGTAAGGTACGTAAAC 5'
790Glycine maxTGAAGCTGCCAGCATGATCTalignmentplotGSM848964_SC25_unique_seq_countGLYMA06G18070.2 cdna:novel chromosome:V1.0:Gm06:14387066:14392468:1 gene:GLYMA06G18070 transcript:GLYMA06G18070.2210360.0520202.5
5'     TGAAGCTGCCAGCATGATCT         3'
||||o||o|||||||o|||
3' TGTAACTTTGATGGTCGTATTAGTGGTGGTGT 5'
791Glycine maxATATAGCATCGTGAGCAATCAalignmentplotGSM848964_SC25_unique_seq_countGLYMA13G23520.3 cdna:novel chromosome:V1.0:Gm13:26916462:26919844:-1 gene:GLYMA13G23520 transcript:GLYMA13G23520.312980.01206.666674
5'     ATATAGCATCGTGAGCAATCA        3'
|||o|||||| o|o|||o||
3' AAAGTATGTCGTAGGTTTTGTTGGTGGGTATG 5'
792Glycine maxTGCCTGGCTCCCTGTATGCCalignmentplotGSM848965_Cot100_unique_seq_countGLYMA13G02410.1 cdna:novel chromosome:V1.0:Gm13:2276691:2281351:-1 gene:GLYMA13G02410 transcript:GLYMA13G02410.10153001441440.5
5'     TGCCTGGCTCCCTGTATGCC         3'
||||||||||||||o|||||
3' TAGTACGGACCGAGGGACGTACGGTCGTCCTT 5'
793Glycine maxTGACAGAAGAGAGTGAGCACalignmentplotGSM848965_Cot100_unique_seq_countGLYMA02G43950.1 cdna:novel chromosome:V1.0:Gm02:48631576:48640556:1 gene:GLYMA02G43950 transcript:GLYMA02G43950.107190.0418184
5'     TGACAGAAGAGAGTGAGCAC         3'
|o||||||||||||o| |
3' CGTTATTGTCTTCTCTCATTATTTCTGACAAA 5'
794Glycine maxTGACAGAAGAGAGTGAGCACAalignmentplotGSM848965_Cot100_unique_seq_countGLYMA02G43950.1 cdna:novel chromosome:V1.0:Gm02:48631576:48640556:1 gene:GLYMA02G43950 transcript:GLYMA02G43950.107190.0118184
5'     TGACAGAAGAGAGTGAGCACA        3'
|o||||||||||||o| | |
3' CGTTATTGTCTTCTCTCATTATT-TCTGACAA 5'
795Glycine maxTCGGACCAGGCTTCATTCCalignmentplotGSM848965_Cot100_unique_seq_countGLYMA11G20520.1 cdna:novel chromosome:V1.0:Gm11:17333852:17340583:-1 gene:GLYMA11G20520 transcript:GLYMA11G20520.10130203481741
5'     TCGGACCAGGCTTCATTCC          3'
o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTCCGTAGAC 5'
796Glycine maxTCGGACCAGGCTTCATTCCCalignmentplotGSM848965_Cot100_unique_seq_countGLYMA11G20520.1 cdna:novel chromosome:V1.0:Gm11:17333852:17340583:-1 gene:GLYMA11G20520 transcript:GLYMA11G20520.10130203481741.5
5'     TCGGACCAGGCTTCATTCCC         3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAGA 5'
797Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848965_Cot100_unique_seq_countGLYMA01G34650.3 cdna:novel chromosome:V1.0:Gm01:47082620:47085604:1 gene:GLYMA01G34650 transcript:GLYMA01G34650.3039706120.33331
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' ACAAAGGTGTCCGAAAGAACTTGCTAAAGCTG 5'
798Glycine maxTCCAAAGGGATCGCATTGATCalignmentplotGSM848965_Cot100_unique_seq_countGLYMA03G36770.1 cdna:novel chromosome:V1.0:Gm03:43630257:43634178:1 gene:GLYMA03G36770 transcript:GLYMA03G36770.12180601051
5'     TCCAAAGGGATCGCATTGATC        3'
|||||||||||||||||| ||
3' CTGTAGGTTTCCCTAGCGTAAC-AGAGGTCGA 5'
799Glycine maxTTGACAGAAGATAGAGAGCACalignmentplotGSM848965_Cot100_unique_seq_countGLYMA02G13371.1 cdna:novel chromosome:V1.0:Gm02:11670695:11677275:-1 gene:GLYMA02G13371 transcript:GLYMA02G13371.101261055111.5
5'     TTGACAGAAGATAGAGAGCAC        3'
o|||||||||| |||||||||
3' ACTAGACTGTCTTCTCTCTCTCGTGTCGAACT 5'
800Glycine maxTGAGACCAAATGAGCAGCTGAalignmentplotGSM848965_Cot100_unique_seq_countGLYMA11G37820.1 cdna:novel chromosome:V1.0:Gm11:38824883:38827744:-1 gene:GLYMA11G37820 transcript:GLYMA11G37820.1216750333
5'    TGAGACCA-AATGAGCAGCTGA        3'
|o|o|||| ||||||||||| |
3' TCAATTTTGGTGTTACTCGTCGAGTTCGACGT 5'
801Glycine maxTGACAGAAGAGAGTGAGCACalignmentplotGSM848965_Cot100_unique_seq_countGLYMA02G13371.1 cdna:novel chromosome:V1.0:Gm02:11670695:11677275:-1 gene:GLYMA02G13371 transcript:GLYMA02G13371.121260071.41
5'     TGACAGAAGAGAGTGAGCAC         3'
||||||||||||| ||||||
3' CTAGACTGTCTTCTCTCTCTCGTGTCGAACTA 5'
802Glycine maxTTGACAGAAGATAGAGAGCACalignmentplotGSM848965_Cot100_unique_seq_countGLYMA02G30670.2 cdna:novel chromosome:V1.0:Gm02:32711340:32716829:-1 gene:GLYMA02G30670 transcript:GLYMA02G30670.20962068681
5'     TTGACAGAAGATAGAGAGCAC        3'
||||||||||| |||||||||
3' ACTGAACTGTCTTCTCTCTCTCGTGTCAAACT 5'
803Glycine maxTGAAGCTGCCAGCATGATCTalignmentplotGSM848965_Cot100_unique_seq_countGLYMA05G27580.1 cdna:novel chromosome:V1.0:Gm05:33489312:33494876:-1 gene:GLYMA05G27580 transcript:GLYMA05G27580.1223180.03160323
5'     TGAAGCTGCCAGCATGATCT         3'
||||||||||| ||||||
3' CTTATGTTCGACGGTCGGACTAGAGTGTCCCA 5'
804Glycine maxTTTGGATTGAAGGGAGCTCalignmentplotGSM848965_Cot100_unique_seq_countGLYMA12G35701.1 cdna:novel chromosome:V1.0:Gm12:38824454:38828331:-1 gene:GLYMA12G35701 transcript:GLYMA12G35701.12130502052
5'     TTTGGATTGAAGGGAGCTC          3'
||||| |||||||| ||||
3' AACAAAACCAAACTTCCCCCGAGATAACACTT 5'
805Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848965_Cot100_unique_seq_countGLYMA14G10090.1 cdna:novel chromosome:V1.0:Gm14:8190765:8195025:-1 gene:GLYMA14G10090 transcript:GLYMA14G10090.121104051171
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' CGGAAGGTGTCCGAAAGAACTTGCTACCGCAG 5'
806Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848965_Cot100_unique_seq_countGLYMA06G13960.2 cdna:novel chromosome:V1.0:Gm06:11041407:11044426:1 gene:GLYMA06G13960 transcript:GLYMA06G13960.2271309318.61
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCCCCTGCCG 5'
807Glycine maxTGACAGAAGAGAGTGAGCACalignmentplotGSM848965_Cot100_unique_seq_countGLYMA02G30670.2 cdna:novel chromosome:V1.0:Gm02:32711340:32716829:-1 gene:GLYMA02G30670 transcript:GLYMA02G30670.229610991
5'     TGACAGAAGAGAGTGAGCAC         3'
||||||||||||| ||||||
3' CTGAACTGTCTTCTCTCTCTCGTGTCAAACTC 5'
808Glycine maxTGAAGCTGCCAGCATGATCTGAalignmentplotGSM848965_Cot100_unique_seq_countGLYMA15G09750.3 cdna:novel chromosome:V1.0:Gm15:6969486:6976414:-1 gene:GLYMA15G09750 transcript:GLYMA15G09750.3232360.03338.254
5'     TGAAGCTGCCAGCATGATCTGA       3'
||||||||||| |||||| |
3' TTTATGTTCGACGGTCGGACTAGAGTGTCCCA 5'
809Glycine maxTCCAAAGGGATCGCATTGATCalignmentplotGSM848965_Cot100_unique_seq_countGLYMA19G39420.1 cdna:novel chromosome:V1.0:Gm19:46102119:46105994:1 gene:GLYMA19G39420 transcript:GLYMA19G39420.12178801051
5'     TCCAAAGGGATCGCATTGATC        3'
|||||||||||||||||| ||
3' CTGTAGGTTTCCCTAGCGTAAC-AGAGGTCGA 5'
810Glycine maxTTCCACAGCTTTCTTGAACTGalignmentplotGSM848965_Cot100_unique_seq_countGLYMA02G02942.2 cdna:novel chromosome:V1.0:Gm02:2254118:2257679:1 gene:GLYMA02G02942 transcript:GLYMA02G02942.225490.02213
5'    TTCCACA-GCTTTCTTGAACTG        3'
o||| || ||||||o|||||||
3' AACGAGGCGTCCGAAAGGACTTGACAAAAGAG 5'
811Glycine maxTCATCATCATCATCTTCTTCTalignmentplotGSM848965_Cot100_unique_seq_countGLYMA03G32020.3 cdna:novel chromosome:V1.0:Gm03:39830110:39837209:-1 gene:GLYMA03G32020 transcript:GLYMA03G32020.328270.042642642
5'     TCATCATCATCATCTTCTTCT        3'
|| ||||||||||| ||||||
3' GAGAAGGAGTAGTAGTAGTAGAAGAAGAACGA 5'
812Glycine maxTCATCATCATCATCTTCTTCTalignmentplotGSM848965_Cot100_unique_seq_countGLYMA03G32020.3 cdna:novel chromosome:V1.0:Gm03:39830110:39837209:-1 gene:GLYMA03G32020 transcript:GLYMA03G32020.32824046460
5'     TCATCATCATCATCTTCTTCT        3'
|||||||||||||||||||||
3' AAGGAGTAGTAGTAGTAGAAGAAGAACGACAC 5'
813Glycine maxCTTTGTATTCTTCCACAGCTTalignmentplotGSM848965_Cot100_unique_seq_countGLYMA19G29180.3 cdna:novel chromosome:V1.0:Gm19:36747960:36752977:-1 gene:GLYMA19G29180 transcript:GLYMA19G29180.325260.02295.83
5'     CTTTGTATTCTTCCACAGCTT        3'
|o|||||||| || |||||o|
3' CGGAGGAACATAAGTAGTTGTCGGAACACTCT 5'
814Glycine maxTGAAGCTGCCAGCATGATCTTalignmentplotGSM848965_Cot100_unique_seq_countGLYMA02G40650.1 cdna:novel chromosome:V1.0:Gm02:45888235:45899367:-1 gene:GLYMA02G40650 transcript:GLYMA02G40650.1029420.0572184
5'     TGAAGCTGCCAGCATGATCTT        3'
||||||||||| ||||||
3' CTTATGTTCGACGGTCGGACTAGATTCTCCCA 5'
815Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848965_Cot100_unique_seq_countGLYMA04G40880.4 cdna:novel chromosome:V1.0:Gm04:46789378:46792991:-1 gene:GLYMA04G40880 transcript:GLYMA04G40880.42114109318.61
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCCCCTGCCG 5'
816Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848965_Cot100_unique_seq_countGLYMA09G07990.1 cdna:novel chromosome:V1.0:Gm09:7003261:7005873:-1 gene:GLYMA09G07990 transcript:GLYMA09G07990.104860120241
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCTAAGAAGG 5'
817Glycine maxTGACAGAAGAGAGTGAGCACalignmentplotGSM848965_Cot100_unique_seq_countGLYMA0005S50.1 cdna:novel chromosome:V1.0:Gm05:16185:21667:1 gene:GLYMA0005S50 transcript:GLYMA0005S50.121911051.251
5'     TGACAGAAGAGAGTGAGCAC         3'
||||||||||||| ||||||
3' CTCTACTGTCTTCTCTCTCTCGTGTTGTTCTC 5'
818Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848965_Cot100_unique_seq_countGLYMA16G00971.3 cdna:novel chromosome:V1.0:Gm16:636293:639481:-1 gene:GLYMA16G00971 transcript:GLYMA16G00971.3295507414.81
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCCAAAGACG 5'
819Glycine maxTTGACAGAAGATAGAGAGCACalignmentplotGSM848965_Cot100_unique_seq_countGLYMA11G36980.3 cdna:known chromosome:V1.0:Gm11:38244535:38250746:1 gene:GLYMA11G36980 transcript:GLYMA11G36980.30352704511.251
5'     TTGACAGAAGATAGAGAGCAC        3'
||||||||||| |||||||||
3' AAGCAACTGTCTTCTCTCTCTCGTGCCAATTG 5'
820Glycine maxTTTGGATTGAAGGGAGCTCalignmentplotGSM848965_Cot100_unique_seq_countGLYMA06G47000.2 cdna:novel chromosome:V1.0:Gm06:49543622:49548924:-1 gene:GLYMA06G47000 transcript:GLYMA06G47000.221343051.251
5'     TTTGGATTGAAGGGAGCTC          3'
|||||| ||||||||||||
3' CCTTAAACCTCACTTCCCTCGAGACTGAAGTG 5'
821Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848965_Cot100_unique_seq_countGLYMA13G16924.1 cdna:novel chromosome:V1.0:Gm13:20777152:20779829:-1 gene:GLYMA13G16924 transcript:GLYMA13G16924.107690120241
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCTAAAAAGG 5'
822Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848965_Cot100_unique_seq_countGLYMA03G35010.3 cdna:novel chromosome:V1.0:Gm03:42329293:42333139:1 gene:GLYMA03G35010 transcript:GLYMA03G35010.3211910143.51
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' ATCAAGGTGTCCGAAAGAACTTGCCAAAGAAG 5'
823Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848965_Cot100_unique_seq_countGLYMA17G05800.1 cdna:novel chromosome:V1.0:Gm17:4086935:4089150:1 gene:GLYMA17G05800 transcript:GLYMA17G05800.104220120241
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCCAAAAAGG 5'
824Glycine maxTGCCTGGCTCCCTGTATGCCalignmentplotGSM848965_Cot100_unique_seq_countGLYMA11G20490.1 cdna:novel chromosome:V1.0:Gm11:17300321:17304135:1 gene:GLYMA11G20490 transcript:GLYMA11G20490.10155201003250.751
5'     TGCCTGGCTCCCTGTATGCC         3'
||||||||||||||||| ||
3' TCGTACGGACCGAGGGACATAGGGACGTCCTC 5'
825Glycine maxTGTGTTCTCAGGTCGCCCCTalignmentplotGSM848965_Cot100_unique_seq_countGLYMA03G40280.2 cdna:novel chromosome:V1.0:Gm03:46076955:46080391:1 gene:GLYMA03G40280 transcript:GLYMA03G40280.221560.0152.52.5
5'     TGTGTTCTCAGGTCGCCCCT         3'
|||| ||||||| |o|||||
3' AGTTACACTAGAGTCCCGTGGGGAATCTGTCT 5'
826Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848965_Cot100_unique_seq_countGLYMA19G37740.1 cdna:novel chromosome:V1.0:Gm19:44838730:44842363:1 gene:GLYMA19G37740 transcript:GLYMA19G37740.129430143.51
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' ATCAAGGTGTCCGAAAGAACTTGCCAAAGAAG 5'
827Glycine maxTGCCTGGCTCCCTGTATGCCalignmentplotGSM848965_Cot100_unique_seq_countGLYMA09G28360.2 cdna:novel chromosome:V1.0:Gm09:35348339:35353261:1 gene:GLYMA09G28360 transcript:GLYMA09G28360.21252101003250.750.5
5'     TGCCTGGCTCCCTGTATGCC         3'
||||||||||||o|||||||
3' TCGTACGGACCGAGGGGCATACGGACGTCTGG 5'
828Glycine maxTGGAGAAGCAGGGCACGTGCAalignmentplotGSM848965_Cot100_unique_seq_countGLYMA05G00930.2 cdna:novel chromosome:V1.0:Gm05:542676:544662:-1 gene:GLYMA05G00930 transcript:GLYMA05G00930.2288901022.5
5'     TGGAGAAGCAGGGCACGTGCA        3'
||||||||||||||||||o
3' CCTAACCTCTTCGTCCCGTGCATTCGGCTTAG 5'
829Glycine maxTTGAGCCGTGCCAATATCAalignmentplotGSM848965_Cot100_unique_seq_countGLYMA03G03760.1 cdna:novel chromosome:V1.0:Gm03:3581308:3584468:-1 gene:GLYMA03G03760 transcript:GLYMA03G03760.10172903991331.5
5'     TTGAGCCGTGCCAATATCA          3'
||||||||o|||||||||
3' CACTAACTCGGCGCGGTTATAGGGAACGCGTA 5'
830Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848965_Cot100_unique_seq_countGLYMA10G07790.2 cdna:novel chromosome:V1.0:Gm10:6583388:6586706:1 gene:GLYMA10G07790 transcript:GLYMA10G07790.20646015151
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' AACAAGGTGTCCGAAAGAACTTGCCAAGGCCG 5'
831Glycine maxGGAATCTTGATGATGCTGCAGalignmentplotGSM848965_Cot100_unique_seq_countGLYMA11G00920.2 cdna:novel chromosome:V1.0:Gm11:478506:483371:-1 gene:GLYMA11G00920 transcript:GLYMA11G00920.2221320.04223.5
5'     GGAATCTTGATGATGCTGCAG        3'
o|||||| |||||| || |||
3' ATCGTCTTAGACCTACTAAGA-GTCATAAGAC 5'
832Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848965_Cot100_unique_seq_countGLYMA11G11826.1 cdna:novel chromosome:V1.0:Gm11:8435940:8440047:1 gene:GLYMA11G11826 transcript:GLYMA11G11826.10615013126.21
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' ACTAAGGTGTCCGAAAGAACTTGCCAACGCCG 5'
833Glycine maxTTTGGATTGAAGGGAGCTCalignmentplotGSM848965_Cot100_unique_seq_countGLYMA04G15150.3 cdna:novel chromosome:V1.0:Gm04:15669460:15674719:1 gene:GLYMA04G15150 transcript:GLYMA04G15150.301355051.251
5'     TTTGGATTGAAGGGAGCTC          3'
|||||| ||||||||||||
3' CCTTAAACCTCACTTCCCTCGAGACTGAAACG 5'
834Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848965_Cot100_unique_seq_countGLYMA14G10100.2 cdna:novel chromosome:V1.0:Gm14:8199978:8204920:-1 gene:GLYMA14G10100 transcript:GLYMA14G10100.22114704013.33331
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' CGGAAGGTGTCCGAAAGAACTTGCTACCGCAG 5'
835Glycine maxTGCCTGGCTCCCTGTATGCCalignmentplotGSM848965_Cot100_unique_seq_countGLYMA10G35481.1 cdna:novel chromosome:V1.0:Gm10:43704337:43707929:1 gene:GLYMA10G35481 transcript:GLYMA10G35481.10160901003250.750
5'     TGCCTGGCTCCCTGTATGCC         3'
||||||||||||||||||||
3' TCGTACGGACCGAGGGACATACGGAGGTCTTG 5'
836Glycine maxTCGGACCAGGCTTCATTCCalignmentplotGSM848965_Cot100_unique_seq_countGLYMA05G30000.1 cdna:novel chromosome:V1.0:Gm05:35421769:35428492:1 gene:GLYMA05G30000 transcript:GLYMA05G30000.1210800428.41
5'     TCGGACCAGGCTTCATTCC          3'
o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAGAC 5'
837Glycine maxTCGGACCAGGCTTCATTCCCalignmentplotGSM848965_Cot100_unique_seq_countGLYMA05G30000.1 cdna:novel chromosome:V1.0:Gm05:35421769:35428492:1 gene:GLYMA05G30000 transcript:GLYMA05G30000.1210800428.41.5
5'     TCGGACCAGGCTTCATTCCC         3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5'
838Glycine maxAGGGATAGGTAAAACAATGACalignmentplotGSM848965_Cot100_unique_seq_countGLYMA16G27510.1 cdna:novel chromosome:V1.0:Gm16:31518766:31520692:1 gene:GLYMA16G27510 transcript:GLYMA16G27510.10213043432.5
5'     AGGGATAGGTAAAACAATGAC        3'
||o|||||||||||||oo||
3' ACCCACCTTATCCATTTTGTTGTTGATTGATA 5'
839Glycine maxTGAAGCTGCCAGCATGATCTTalignmentplotGSM848965_Cot100_unique_seq_countGLYMA08G10550.2 cdna:novel chromosome:V1.0:Gm08:7667326:7674265:-1 gene:GLYMA08G10550 transcript:GLYMA08G10550.2035700.02160323.5
5'     TGAAGCTGCCAGCATGATCTT        3'
||||||||||| ||||||o
3' CTTATGTTCGACGGTCGGACTAGAGTGTCCCA 5'
840Glycine maxTGCACTGCCTCTTTCCTGGCTalignmentplotGSM848965_Cot100_unique_seq_countGLYMA08G13510.1 cdna:known chromosome:V1.0:Gm08:9884834:9886018:-1 gene:GLYMA08G13510 transcript:GLYMA08G13510.122110.0273.53
5'     TGCACTGCCTCTTTCCTG-GCT       3'
|||||||||||||o|| | ||o
3' GGTGACGTGACGGAGAAGGGTCTCGGTATAAT 5'
841Glycine maxTCGGACCAGGCTTCATTCCalignmentplotGSM848965_Cot100_unique_seq_countGLYMA08G13110.1 cdna:novel chromosome:V1.0:Gm08:9562597:9569062:1 gene:GLYMA08G13110 transcript:GLYMA08G13110.1210920428.41
5'     TCGGACCAGGCTTCATTCC          3'
o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAAAC 5'
842Glycine maxTCGGACCAGGCTTCATTCCCalignmentplotGSM848965_Cot100_unique_seq_countGLYMA08G13110.1 cdna:novel chromosome:V1.0:Gm08:9562597:9569062:1 gene:GLYMA08G13110 transcript:GLYMA08G13110.1210920428.41.5
5'     TCGGACCAGGCTTCATTCCC         3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAAA 5'
843Glycine maxTTATTGTAACTAATTTGTCGGTalignmentplotGSM848965_Cot100_unique_seq_countGLYMA04G03330.2 cdna:novel chromosome:V1.0:Gm04:2446812:2449903:-1 gene:GLYMA04G03330 transcript:GLYMA04G03330.222260.03194.754
5'     TTATTGTAACTAATTTGTCGGT       3'
||||o||||| |||||o ||oo
3' AAGAAATAGCATTGTTTAAATCGCTGATTCGG 5'
844Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848965_Cot100_unique_seq_countGLYMA01G44471.1 cdna:known chromosome:V1.0:Gm01:55141915:55148004:-1 gene:GLYMA01G44471 transcript:GLYMA01G44471.10835013126.21
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' ACTAAGGTGTCCGAAAGAACTTGCCAACGCCG 5'
845Glycine maxTCGGACCAGGCTTCATTCCalignmentplotGSM848965_Cot100_unique_seq_countGLYMA09G02750.1 cdna:novel chromosome:V1.0:Gm09:1901637:1907522:-1 gene:GLYMA09G02750 transcript:GLYMA09G02750.129680428.41
5'     TCGGACCAGGCTTCATTCC          3'
o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAGAC 5'
846Glycine maxTCGGACCAGGCTTCATTCCCalignmentplotGSM848965_Cot100_unique_seq_countGLYMA09G02750.1 cdna:novel chromosome:V1.0:Gm09:1901637:1907522:-1 gene:GLYMA09G02750 transcript:GLYMA09G02750.129680428.41.5
5'     TCGGACCAGGCTTCATTCCC         3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5'
847Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848965_Cot100_unique_seq_countGLYMA07G04290.1 cdna:novel chromosome:V1.0:Gm07:3149413:3151946:-1 gene:GLYMA07G04290 transcript:GLYMA07G04290.1272807414.81
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCCAAAGACG 5'
848Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848965_Cot100_unique_seq_countGLYMA11G01060.1 cdna:novel chromosome:V1.0:Gm11:573836:577693:1 gene:GLYMA11G01060 transcript:GLYMA11G01060.10486013126.21
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' ACTAAGGTGTCCGAAAGAACTTGCCAACGCCG 5'
849Glycine maxTCGGACCAGGCTTCATTCCalignmentplotGSM848965_Cot100_unique_seq_countGLYMA15G13640.1 cdna:novel chromosome:V1.0:Gm15:10250637:10256541:-1 gene:GLYMA15G13640 transcript:GLYMA15G13640.10945015215.21
5'     TCGGACCAGGCTTCATTCC          3'
o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAGAC 5'
850Glycine maxTCGGACCAGGCTTCATTCCCalignmentplotGSM848965_Cot100_unique_seq_countGLYMA15G13640.1 cdna:novel chromosome:V1.0:Gm15:10250637:10256541:-1 gene:GLYMA15G13640 transcript:GLYMA15G13640.10945015215.21.5
5'     TCGGACCAGGCTTCATTCCC         3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5'
851Glycine maxCAGCCAAGGATGACTTGCCGalignmentplotGSM848965_Cot100_unique_seq_countGLYMA14G01360.1 cdna:novel chromosome:V1.0:Gm14:766608:770587:1 gene:GLYMA14G01360 transcript:GLYMA14G01360.1215550115.51.5
5'     CAGCCAAGGATGACTTGCCG         3'
||||||||o|||| ||||||
3' TTGTGTCGGTTCTTACTAAACGGCGAACTGTA 5'
852Glycine maxTCGGACCAGGCTTCATTCCalignmentplotGSM848965_Cot100_unique_seq_countGLYMA08G21620.3 cdna:novel chromosome:V1.0:Gm08:16441681:16450105:-1 gene:GLYMA08G21620 transcript:GLYMA08G21620.32866015215.20.5
5'     TCGGACCAGGCTTCATTCC          3'
o||||||||||||||||||
3' CTTAGGCCTGGTCCGAAGTAAGGTCCGTAAAC 5'
853Glycine maxAGGTGGGCATACTGTCAACTalignmentplotGSM848965_Cot100_unique_seq_countGLYMA14G25810.2 cdna:novel chromosome:V1.0:Gm14:31317051:31322038:-1 gene:GLYMA14G25810 transcript:GLYMA14G25810.221568052.53
5'     AGGTGGGCATACTGTCAACT         3'
|||||||||| || | ||||
3' TTTTTCCACCCGTAGGA-ATTTGAATTAATAA 5'
854Glycine maxTCGGACCAGGCTTCATTCCalignmentplotGSM848965_Cot100_unique_seq_countGLYMA04G09000.2 cdna:novel chromosome:V1.0:Gm04:7150718:7157032:1 gene:GLYMA04G09000 transcript:GLYMA04G09000.22939015215.21
5'     TCGGACCAGGCTTCATTCC          3'
o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTCCGTAAAC 5'
855Glycine maxTCGGACCAGGCTTCATTCCCalignmentplotGSM848965_Cot100_unique_seq_countGLYMA04G09000.2 cdna:novel chromosome:V1.0:Gm04:7150718:7157032:1 gene:GLYMA04G09000 transcript:GLYMA04G09000.22939015215.21.5
5'     TCGGACCAGGCTTCATTCCC         3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAAA 5'
856Glycine maxTTGACAGAAGATAGAGAGCACalignmentplotGSM848965_Cot100_unique_seq_countGLYMA01G08056.1 cdna:novel chromosome:V1.0:Gm01:9051133:9057025:-1 gene:GLYMA01G08056 transcript:GLYMA01G08056.101408055111.5
5'     TTGACAGAAGATAGAGAGCAC        3'
o|||||||||| |||||||||
3' ACTAGACTGTCTTCTCTCTCTCGTGTCGAACT 5'
857Glycine maxTTCATTTTTAAAATAGGCATTalignmentplotGSM848965_Cot100_unique_seq_countGLYMA05G01240.4 cdna:novel chromosome:V1.0:Gm05:785189:792757:-1 gene:GLYMA05G01240 transcript:GLYMA05G01240.4218840.0120.3333333
5'     TTCATTTTTA-AAATAGGCATT       3'
|||||o|||| |||||||| o|
3' TTAAAAGTAGAAATGTTTATCCGAGACCATTT 5'
858Glycine maxTGACAGAAGAGAGTGAGCACalignmentplotGSM848965_Cot100_unique_seq_countGLYMA01G08056.1 cdna:novel chromosome:V1.0:Gm01:9051133:9057025:-1 gene:GLYMA01G08056 transcript:GLYMA01G08056.121407071.41
5'     TGACAGAAGAGAGTGAGCAC         3'
||||||||||||| ||||||
3' CTAGACTGTCTTCTCTCTCTCGTGTCGAACTA 5'
859Glycine maxTTCCACAGCTTTCTTGAACTTalignmentplotGSM848965_Cot100_unique_seq_countGLYMA14G10100.3 cdna:novel chromosome:V1.0:Gm14:8199978:8204018:-1 gene:GLYMA14G10100 transcript:GLYMA14G10100.326680.054013.33333
5'    TTCCACA-GCTTTCTTGAACTT        3'
||||||| ||||||||||||
3' CGGAAGGTGTCCGAAAGAACTTGCTACCGCAG 5'
860Glycine maxATATAGCATCGTGAGCAATCAalignmentplotGSM848965_Cot100_unique_seq_countGLYMA13G23520.1 cdna:known chromosome:V1.0:Gm13:26916462:26919844:-1 gene:GLYMA13G23520 transcript:GLYMA13G23520.112980165.333334
5'     ATATAGCATCGTGAGCAATCA        3'
|||o|||||| o|o|||o||
3' AAAGTATGTCGTAGGTTTTGTTGGTGGGTATG 5'
861Glycine maxTTGAGCCGTGCCAATATCAalignmentplotGSM848965_Cot100_unique_seq_countGLYMA01G33270.1 cdna:novel chromosome:V1.0:Gm01:45164207:45167759:-1 gene:GLYMA01G33270 transcript:GLYMA01G33270.10120803991331.5
5'     TTGAGCCGTGCCAATATCA          3'
||||||||o|||||||||
3' CACTAACTCGGCGCGGTTATAGGGAACGCGTA 5'
862Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848965_Cot100_unique_seq_countGLYMA17G35100.2 cdna:novel chromosome:V1.0:Gm17:39088426:39092940:1 gene:GLYMA17G35100 transcript:GLYMA17G35100.221159051171
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' CGGAAGGTGTCCGAAAGAACTTGCTACCGCAG 5'
863Glycine maxTTTGGATTGAAGGGAGCTCalignmentplotGSM848965_Cot100_unique_seq_countGLYMA13G34710.1 cdna:novel chromosome:V1.0:Gm13:36249608:36253233:1 gene:GLYMA13G34710 transcript:GLYMA13G34710.11121402052
5'     TTTGGATTGAAGGGAGCTC          3'
||||| |||||||| ||||
3' AACAAAACCAAACTTCCCCCGAGATAACACTT 5'
864Glycine maxTGAAGCTGCCAGCATGATCTalignmentplotGSM848965_Cot100_unique_seq_countGLYMA15G00770.2 cdna:novel chromosome:V1.0:Gm15:462686:466246:-1 gene:GLYMA15G00770 transcript:GLYMA15G00770.20163401241242
5'     TGAAGCTGCCAGCATGATCT         3'
||||||||||||| || |||
3' GTAGACTTCGACGGTCG-ACAAGATGGCAGGA 5'
865Glycine maxTGCCTGGCTCCCTGTATGCCalignmentplotGSM848965_Cot100_unique_seq_countGLYMA12G29720.1 cdna:novel chromosome:V1.0:Gm12:33175269:33178907:-1 gene:GLYMA12G29720 transcript:GLYMA12G29720.10165401201200
5'     TGCCTGGCTCCCTGTATGCC         3'
||||||||||||||||||||
3' TCGTACGGACCGAGGGACATACGGACGTCCTC 5'
866Glycine maxTGCCTGGCTCCCTGTATGCCalignmentplotGSM848965_Cot100_unique_seq_countGLYMA14G33730.1 cdna:novel chromosome:V1.0:Gm14:41889885:41894154:1 gene:GLYMA14G33730 transcript:GLYMA14G33730.101184094470.5
5'     TGCCTGGCTCCCTGTATGCC         3'
||||||||||||||o|||||
3' TAGTACGGACCGAGGGACGTACGGTCGTCCTT 5'
867Glycine maxCAGAGAGCAGAAACAGAACTGalignmentplotGSM848965_Cot100_unique_seq_countGLYMA08G15090.1 cdna:known chromosome:V1.0:Gm08:10946832:10949797:1 gene:GLYMA08G15090 transcript:GLYMA08G15090.106600.0255554
5'     CAGAGAGCAGAAACAGAACTG        3'
|||o|| ||||||| ||||o
3' AACGATCTTTCATCTTTGT-TTGATAACAGAT 5'
868Glycine maxATGCACTGCCTGTTCCCTGGCalignmentplotGSM848965_Cot100_unique_seq_countGLYMA06G10490.1 cdna:known chromosome:V1.0:Gm06:7957133:7959717:1 gene:GLYMA06G10490 transcript:GLYMA06G10490.118890338.254
5'     ATGCACTGCCTGTTCCCTGGC        3'
|||||| ||o||o||||||
3' CTGAAACGTGA-GGGCAGGGGACCAACAACTT 5'
869Glycine maxTGAAGCTGCCAGCATGATCTalignmentplotGSM848965_Cot100_unique_seq_countGLYMA14G38940.1 cdna:novel chromosome:V1.0:Gm14:48094947:48103242:-1 gene:GLYMA14G38940 transcript:GLYMA14G38940.1129430160323
5'     TGAAGCTGCCAGCATGATCT         3'
||||||||||| ||||||
3' CTTATGTTCGACGGTCGGACTAGATTCTCCCA 5'
870Glycine maxAATCGTCTTCTTCCTCGCTTTalignmentplotGSM848965_Cot100_unique_seq_countGLYMA01G36460.2 cdna:novel chromosome:V1.0:Gm01:48974135:48978029:-1 gene:GLYMA01G36460 transcript:GLYMA01G36460.2153904321.54
5'     AATCGTCTTCTTCCTCGCTTT        3'
||||| ||o|||| o|||o|o
3' AGTCTTAGCCGAGGAAGAGGCGGAGCTCGAAC 5'
871Glycine maxTTGAGCCGTGCCAATATCAalignmentplotGSM848965_Cot100_unique_seq_countGLYMA01G18040.1 cdna:novel chromosome:V1.0:Gm01:22484145:22487576:-1 gene:GLYMA01G18040 transcript:GLYMA01G18040.1217680136.51.5
5'     TTGAGCCGTGCCAATATCA          3'
||||||||o|||||||||
3' CACTAACTCGGCGCGGTTATAGGGTACGCGCT 5'
872Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848965_Cot100_unique_seq_countGLYMA15G19460.1 cdna:novel chromosome:V1.0:Gm15:16759912:16762499:-1 gene:GLYMA15G19460 transcript:GLYMA15G19460.12450016161
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCTAAGAAGG 5'
873Glycine maxTCCAAAGGGATCGCATTGATCalignmentplotGSM848965_Cot100_unique_seq_countGLYMA10G02630.1 cdna:novel chromosome:V1.0:Gm10:1861030:1864010:-1 gene:GLYMA10G02630 transcript:GLYMA10G02630.122166020.51
5'     TCCAAAGGGATCGCATTGATC        3'
|||||||||||||||||| ||
3' CTGTAGGTTTCCCTAGCGTAAC-AGAGGTCGA 5'
874Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848965_Cot100_unique_seq_countGLYMA01G35145.1 cdna:novel chromosome:V1.0:Gm01:47696214:47700220:1 gene:GLYMA01G35145 transcript:GLYMA01G35145.1055602601301
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' ACTAAGGTGTCCGAAAGAACTTGCCATTGCGG 5'
875Glycine maxTTCCACAGCTTTCTTGAACTTalignmentplotGSM848965_Cot100_unique_seq_countGLYMA11G12140.5 cdna:novel chromosome:V1.0:Gm11:8671668:8673811:1 gene:GLYMA11G12140 transcript:GLYMA11G12140.506450.04172.833334
5'     TTCCACAGCTTTCTTGAACTT        3'
||||| ||||| |||| |||
3' AGACAAGGTTTCGAA-GAACACGAAACTAAAG 5'
876Glycine maxAGAATTTGTGGGAATGGGCTGAalignmentplotGSM848965_Cot100_unique_seq_countGLYMA19G03410.2 cdna:novel chromosome:V1.0:Gm19:3423610:3427657:1 gene:GLYMA19G03410 transcript:GLYMA19G03410.2216000.051864
5'     AGAATTTGTGGGAATGGGCTGA       3'
||||||||||oo|| ||| ||
3' CGTTTCTTAAACACTTTT-CCCCCCTTTTTCT 5'
877Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848965_Cot100_unique_seq_countGLYMA12G01730.2 cdna:novel chromosome:V1.0:Gm12:1061212:1065353:1 gene:GLYMA12G01730 transcript:GLYMA12G01730.22576013126.21
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' ACTAAGGTGTCCGAAAGAACTTGCCAACGCCG 5'
878Glycine maxTGAGCCGTGCCAATATCACalignmentplotGSM848965_Cot100_unique_seq_countGLYMA09G40830.1 cdna:novel chromosome:V1.0:Gm09:45645746:45647859:1 gene:GLYMA09G40830 transcript:GLYMA09G40830.1013050.0310954.53.5
5'     TGAGCCGTGCCAATATCAC          3'
| |o|| ||||||o|o|||
3' GGTCAGTTGGAACGGTTGTGGTGTTTTCTGTA 5'
879Glycine maxAGGGATAGGTAAAACAATGACalignmentplotGSM848965_Cot100_unique_seq_countGLYMA12G02510.4 cdna:novel chromosome:V1.0:Gm12:1615086:1624839:1 gene:GLYMA12G02510 transcript:GLYMA12G02510.4213250.0456144
5'     AGGGATAGGTAAAACAATGAC        3'
| |o|||o||||||| ||||
3' CAGGT-CTTATTCATTTTGGTACTCTTTTACT 5'
880Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848965_Cot100_unique_seq_countGLYMA03G02500.1 cdna:known chromosome:V1.0:Gm03:2276240:2279952:-1 gene:GLYMA03G02500 transcript:GLYMA03G02500.1279306120.33331
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' ACAAAGGTGTCCGAAAGAACTTGCTAAAGCTG 5'
881Glycine maxCAAACCTCCGTAGCCTGTATCalignmentplotGSM848965_Cot100_unique_seq_countGLYMA15G06570.1 cdna:novel chromosome:V1.0:Gm15:4643944:4647571:-1 gene:GLYMA15G06570 transcript:GLYMA15G06570.122645085853
5'     CAAACCTCCGTAGCCTGTATC        3'
|||| |||||o|o||| ||||
3' CATAGTTTTGAGGCGTTGGA-ATAGTGTCAGG 5'
882Glycine maxCTGCCATTGCCATTGCCATTGalignmentplotGSM848965_Cot100_unique_seq_countGLYMA11G12471.1 cdna:novel chromosome:V1.0:Gm11:8907787:8908946:-1 gene:GLYMA11G12471 transcript:GLYMA11G12471.125710.0518183.5
5'     CTGCCATTGCCATTGCCATTG        3'
|o||||| ||||oo||||oo|
3' CGGTGGCGGTATCGGTGGCGGTGGCGGTGGCG 5'
883Glycine maxATATAGCATCGTGAGCAATCAalignmentplotGSM848965_Cot100_unique_seq_countGLYMA13G23520.2 cdna:known chromosome:V1.0:Gm13:26916462:26919844:-1 gene:GLYMA13G23520 transcript:GLYMA13G23520.213030.01165.333334
5'     ATATAGCATCGTGAGCAATCA        3'
|||o|||||| o|o|||o||
3' AAAGTATGTCGTAGGTTTTGTTGGTGACAAGG 5'
884Glycine maxTCGGACCAGGCTTCATTCCalignmentplotGSM848965_Cot100_unique_seq_countGLYMA05G21726.1 cdna:novel chromosome:V1.0:Gm05:26595908:26602630:1 gene:GLYMA05G21726 transcript:GLYMA05G21726.12193015215.20.5
5'     TCGGACCAGGCTTCATTCC          3'
o||||||||||||||||||
3' CTTAGGCCTGGTCCGAAGTAAGGTACGTAAAC 5'
885Glycine maxTGAAGCTGCCAGCATGATCTalignmentplotGSM848965_Cot100_unique_seq_countGLYMA13G29320.2 cdna:novel chromosome:V1.0:Gm13:32246000:32253106:1 gene:GLYMA13G29320 transcript:GLYMA13G29320.2233560.05338.253
5'     TGAAGCTGCCAGCATGATCT         3'
||||||||||| ||||||
3' TTTATGTTCGACGGTCGGACTAGAGTGTCCCA 5'
886Glycine maxTTTGGATTGAAGGGAGCTCTAalignmentplotGSM848965_Cot100_unique_seq_countGLYMA19G42890.4 cdna:novel chromosome:V1.0:Gm19:48706603:48709235:1 gene:GLYMA19G42890 transcript:GLYMA19G42890.423780.05224.44
5'     TTTGGATTGAAGGGAGCTCTA        3'
|| ||||||||o | ||||o|
3' CAATAATCCTAACTTTACGCGAGGTCAACTGT 5'
887Glycine maxTTGAGCCGTGCCAATATCAalignmentplotGSM848965_Cot100_unique_seq_countGLYMA11G17490.1 cdna:novel chromosome:V1.0:Gm11:13613694:13616986:1 gene:GLYMA11G17490 transcript:GLYMA11G17490.1016580136.51.5
5'     TTGAGCCGTGCCAATATCA          3'
||||||||o|||||||||
3' CACTAACTCGGCGCGGTTATAGGGCACGCGCT 5'
888Glycine maxTCATCATCATCATCATCTTGCalignmentplotGSM848965_Cot100_unique_seq_countGLYMA07G31880.2 cdna:known chromosome:V1.0:Gm07:36863009:36864165:1 gene:GLYMA07G31880 transcript:GLYMA07G31880.214640.0460.4285713
5'     TCATCATCATCATCATCTTGC        3'
|||||||||| ||||||| |
3' AAGTAGTAGTAGTAAAAGTAGAAGGAGAAACA 5'
889Glycine maxTGGAGAAGCAGGGCACGTGCAalignmentplotGSM848965_Cot100_unique_seq_countGLYMA06G21020.1 cdna:known chromosome:V1.0:Gm06:17431771:17433898:1 gene:GLYMA06G21020 transcript:GLYMA06G21020.1211060.011022.5
5'     TGGAGAAGCAGGGCACGTGCA        3'
||||||||||||||||||o
3' CCTAACCTCTTCGTCCCGTGCATTCGTCTTAG 5'
890Glycine maxAAGCTCAGGAGGGATAGCACCalignmentplotGSM848965_Cot100_unique_seq_countGLYMA10G35510.2 cdna:novel chromosome:V1.0:Gm10:43728062:43744504:-1 gene:GLYMA10G35510 transcript:GLYMA10G35510.2212770.0452.54
5'     AAGCTCAGGAGGGATAGCACC        3'
||||o|||o|o|| o|||| |
3' TCAGTTCGGGTCTTTCCGGTCGTTGGAGAAAC 5'
891Glycine maxTGACAGAAGAGAGTGAGCACalignmentplotGSM848965_Cot100_unique_seq_countGLYMA17G08840.2 cdna:novel chromosome:V1.0:Gm17:6526544:6532020:-1 gene:GLYMA17G08840 transcript:GLYMA17G08840.221900051.251
5'     TGACAGAAGAGAGTGAGCAC         3'
||||||||||||| ||||||
3' CTCTACTGTCTTCTCTCTCTCGTGTTGTTCTC 5'
892Glycine maxTTCCACAGCTTTCTTGAACalignmentplotGSM848965_Cot100_unique_seq_countGLYMA09G34565.1 cdna:novel chromosome:V1.0:Gm09:40925699:40929850:1 gene:GLYMA09G34565 transcript:GLYMA09G34565.1061002601301
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' ACTAAGGTGTCCGAAAGAACTTGCCATTGCTG 5'
893Glycine maxTCATCATCATCATCTTCTTCTalignmentplotGSM848965_Cot100_unique_seq_countGLYMA08G06370.1 cdna:novel chromosome:V1.0:Gm08:4519476:4521326:1 gene:GLYMA08G06370 transcript:GLYMA08G06370.1110350.0260.4285712.5
5'     TCATCATCATCATCTTCTTCT        3'
||||||||||||o| || |||
3' AAGTAGTAGTAGTAGTGGTAGTAGAAGAAGAA 5'
894Glycine maxTCATCATCATCATCATCTTGCalignmentplotGSM848965_Cot100_unique_seq_countGLYMA08G06370.1 cdna:novel chromosome:V1.0:Gm08:4519476:4521326:1 gene:GLYMA08G06370 transcript:GLYMA08G06370.1110350.0260.4285712.5
5'     TCATCATCATCATCATCTTGC        3'
||||||||||||o|||| | |
3' AAGTAGTAGTAGTAGTGGTAGTA-GAAGAAGA 5'
895Hordeum vulgareTCCTAAATACTTGTTGTTGGGalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_52639.4 cdna:novel chromosome:030312v2:7:533269741:533273012:1 gene:MLOC_52639 transcript:MLOC_52639.4213590363.60
5'     TCCTAAATACTTGTTGTTGGG        3'
|||||||||||||||||||||
3' GGCAAGGATTTATGAACAACAACCCCTTTTGA 5'
896Hordeum vulgareTTTGGGACGGAGGGAGTACTGalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_26643.6 cdna:novel chromosome:030312v2:4:90497913:90501180:1 gene:MLOC_26643 transcript:MLOC_26643.6111130202.857142.5
5'     TTTGGGACGGAGGGAGTACTG        3'
||| ||||||||o|||||||
3' CATAAAAGCCTGCCTCTCTCATGAGAGAATAG 5'
897Hordeum vulgareTATGGGACGGAGGGAGTATCTalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_26643.6 cdna:novel chromosome:030312v2:4:90497913:90501180:1 gene:MLOC_26643 transcript:MLOC_26643.6111130202.857143.5
5'     TATGGGACGGAGGGAGTATCT        3'
| | ||||||||o||||| ||
3' CATAAAAGCCTGCCTCTCTCAT-GAGAGAATA 5'
898Hordeum vulgareTATGGGACGGAGGGAGTATCTalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_43138.1 cdna:novel chromosome:030312v2:5HS:8583045:8586254:-1 gene:MLOC_43138 transcript:MLOC_43138.121440052.52
5'     TATGGGACGGAGGGAGTATCT        3'
||||||||||||||||| | |
3' TGTAATACCCTGCCTCCCTCACA-ATGCTGAG 5'
899Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_58213.3 cdna:novel chromosome:030312v2:4:491585828:491587718:-1 gene:MLOC_58213 transcript:MLOC_58213.321476030.751
5'     TATTATGGGACGGAGGGAGTA        3'
|||| ||||||||||||||||
3' GTTAATAAAACCCTGCCTCCCTCATGACATAT 5'
900Hordeum vulgareTATAGTACTCCCTCCGTCCGGalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_26643.6 cdna:novel chromosome:030312v2:4:90497913:90501180:1 gene:MLOC_26643 transcript:MLOC_26643.6212170713
5'     TATAGTACTCCCTCCGTCCGG        3'
||o| |||||||| |o|||||
3' TATGATGT-ATGAGGGAAGTAGGCCTTAATGA 5'
901Hordeum vulgareTTTGGGACGGAGGGAGTACTGalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_53316.1 cdna:known chromosome:030312v2:1:416027895:416032751:1 gene:MLOC_53316 transcript:MLOC_53316.123455080.8888891
5'     TTTGGGACGGAGGGAGTACTG        3'
||||||||||||o|||||||o
3' AATAAAACCCTGCCTCTCTCATGATTAAATCA 5'
902Hordeum vulgareTATGGGACGGAGGGAGTATCTalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_53316.1 cdna:known chromosome:030312v2:1:416027895:416032751:1 gene:MLOC_53316 transcript:MLOC_53316.1234550.0180.8888892.5
5'     TATGGGACGGAGGGAGTATCT        3'
| ||||||||||o||||| ||
3' AATAAAACCCTGCCTCTCTCAT-GATTAAATC 5'
903Hordeum vulgareAGTACTTCCTCCGTCCCAAAAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_54692.6 cdna:novel chromosome:030312v2:2:465643059:465648897:-1 gene:MLOC_54692 transcript:MLOC_54692.62118701223
5'     AGTACTTCCTCCGTCCCAAAA        3'
|o||||o|||| ||| |||||
3' TACTTTATGAGGGAGACAGTGTTTTCTATTCA 5'
904Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_48886.1 cdna:novel contig:220312v1:morex_contig_331488:20:2271:1 gene:MLOC_48886 transcript:MLOC_48886.121120772
5'     TATTATGGGACGGAGGGAGTA        3'
|||| ||||| ||||||||||
3' GTGAATAAAACCCTACCTCCCTCATGTTTTAT 5'
905Hordeum vulgareTATTTCTTTACAGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_56099.2 cdna:novel chromosome:030312v2:5:215441467:215449220:-1 gene:MLOC_56099 transcript:MLOC_56099.2214920.051223
5'     TATTTCTTTACAGAGGGAGTA        3'
|| |o|||||||o|o||||o|
3' TCATAT-AGGAAATGTTTTCCTCGTTATCGTC 5'
906Hordeum vulgareTTACTCCCTCCGTCCTAAAATalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_52900.2 cdna:novel chromosome:030312v2:3HS:1323545:1325511:1 gene:MLOC_52900 transcript:MLOC_52900.2214280.011053.5
5'     TTACTCCCTCCGTCCTAAAAT        3'
| ||| ||||||| |o|||||
3' AGTGACTGATGGAGGCATGGTTTTATATTCAG 5'
907Hordeum vulgareGTACTCCCTCCGTCCTAAAATalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_52900.2 cdna:novel chromosome:030312v2:3HS:1323545:1325511:1 gene:MLOC_52900 transcript:MLOC_52900.2214280.051053.5
5'     GTACTCCCTCCGTCCTAAAAT        3'
| ||| ||||||| |o|||||
3' GTGAC-TGATGGAGGCATGGTTTTATATTCAG 5'
908Hordeum vulgareTCCACAGGCTTTCTTGAACTGalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_67201.1 cdna:known chromosome:030312v2:4:31377429:31381415:-1 gene:MLOC_67201 transcript:MLOC_67201.127220289.333332
5'     TCCACAGGCTTTCTTGAACTG        3'
|||||| |||||||||||| |
3' CGGAAGGTGTACGAAAGAACTTG-CTACCGCA 5'
909Hordeum vulgareGAGCTCCTATCATTCCAATGAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_10773.6 cdna:novel chromosome:030312v2:2:455211817:455213748:-1 gene:MLOC_10773 transcript:MLOC_10773.6261701833
5'     GAGCTCCTATCATTCCAATGA        3'
||o|| |o||||oo|||||||
3' AGTTCTTGACGGTAGTGGGGTTACTATTTTCG 5'
910Hordeum vulgareTCGGACCAGGCTTCATTCCalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_79063.2 cdna:novel chromosome:030312v2:3:89144249:89147977:-1 gene:MLOC_79063 transcript:MLOC_79063.221460657.222221
5'     TCGGACCAGGCTTCATTCC          3'
o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTCCGTAAAC 5'
911Hordeum vulgareTCGGACCAGGCTTCATTCCCalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_79063.2 cdna:novel chromosome:030312v2:3:89144249:89147977:-1 gene:MLOC_79063 transcript:MLOC_79063.221460657.222221.5
5'     TCGGACCAGGCTTCATTCCC         3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAAA 5'
912Hordeum vulgareTCCTAAATACTTGTTGTTGGGalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_10773.6 cdna:novel chromosome:030312v2:2:455211817:455213748:-1 gene:MLOC_10773 transcript:MLOC_10773.602190363.60
5'     TCCTAAATACTTGTTGTTGGG        3'
|||||||||||||||||||||
3' GGCAAGGATTTATGAACAACAACCCCTCTTGA 5'
913Hordeum vulgareTGACAGAAGAGAGTGAGCACAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_11199.7 cdna:known chromosome:030312v2:6HS:3424827:3430372:-1 gene:MLOC_11199 transcript:MLOC_11199.7027910.02202.857143
5'     TGACAGAAGAGAGTGAGCACA        3'
||||||||||||| |||||
3' ACGAACTGTCTTCTCTCTCTCGTACGACTTCT 5'
914Hordeum vulgareTATTTCTTTACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_56099.6 cdna:novel chromosome:030312v2:5:215442226:215449206:-1 gene:MLOC_56099 transcript:MLOC_56099.6014390.021223.5
5'     TATTTCTTTACGGAGGGAGTA        3'
|| |o||||||oo|o||||o|
3' TCATAT-AGGAAATGTTTTCCTCGTTATCGTC 5'
915Hordeum vulgareTTATTTTGGGACGGAGGGAGTalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_34489.2 cdna:known chromosome:030312v2:1H:14965287:14969538:1 gene:MLOC_34489 transcript:MLOC_34489.2212380115.52.5
5'     TTATTTTGGGACGGAGGGAGT        3'
|o|||o|||||| ||o|||||
3' AGTGAGTAAGACCCTGACTTCCTCATGTTTTA 5'
916Hordeum vulgareTCCACAGGCTTTCTTGAACTGalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_64055.3 cdna:novel chromosome:030312v2:7HS:3568107:3569803:-1 gene:MLOC_64055 transcript:MLOC_64055.318310102.51
5'     TCCACAGGCTTTCTTGAACTG        3'
||||||||||||||||||| |
3' ACCAAGGTGTCCGAAAGAACTTGCCAAGAACG 5'
917Hordeum vulgareACTCCCTCTGTCCCAAAATAGalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_52900.2 cdna:novel chromosome:030312v2:3HS:1323545:1325511:1 gene:MLOC_52900 transcript:MLOC_52900.2214260.04115.53.5
5'     ACTCCCTCTGTCCCAAAATAG        3'
||| ||||o|| ||||||||
3' TGACTGATGGAGGCATGGTTTTATATTCAGCA 5'
918Hordeum vulgareCTCCGTTCCTAAATATAAGTTalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_10773.6 cdna:novel chromosome:030312v2:2:455211817:455213748:-1 gene:MLOC_10773 transcript:MLOC_10773.622250422.5
5'     CTCCGTTCCTAAATATAAGTT        3'
|||||||||||||||o |||
3' GAGGGAGGCAAGGATTTATGAACAACAACCCC 5'
919Hordeum vulgareCGATTCCGTAGTCCATGAGCGalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_10392.3 cdna:novel chromosome:030312v2:2:29135635:29144630:1 gene:MLOC_10392 transcript:MLOC_10392.3226950.0480.8888893
5'     CGATTCCGTAGTCCATGAGCG        3'
|||| ||||||| ||| ||||
3' TTTAGCTATGGCATCATGTA-TCGCCATTCGC 5'
920Hordeum vulgareTACTCCCTCCGTTCCAAAATAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_52900.2 cdna:novel chromosome:030312v2:3HS:1323545:1325511:1 gene:MLOC_52900 transcript:MLOC_52900.2214270178.53
5'     TACTCCCTCCGTTCCAAAATA        3'
||| ||||||| ||||||||
3' GTGACTGATGGAGGCATGGTTTTATATTCAGC 5'
921Hordeum vulgareTATATACTCCCTCCGTCCGGAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_20184.2 cdna:novel chromosome:030312v2:3HS:1959986:1965218:1 gene:MLOC_20184 transcript:MLOC_20184.2218470.024013.33332.5
5'     TATATACTCCCTCCGTCCGGA        3'
o| ||||||||||||| ||||
3' AAAAGTTTATGAGGGAGGCAAGCCTTTGTTCA 5'
922Hordeum vulgareAAGCCAAGGATGAGTTGCCTGalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_67781.5 cdna:known chromosome:030312v2:2HS:6286392:6289320:-1 gene:MLOC_67781 transcript:MLOC_67781.529930122.42.5
5'     AAGCCAAGGATGAGTTGCCTG        3'
|||||||||||||o|||||
3' AGTATTCGGTTCCTACTTAACGGTGGCCGCGG 5'
923Hordeum vulgareTTTGGGACGGAGGGAGTACTGalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_55628.1 cdna:novel chromosome:030312v2:6:459158255:459167089:-1 gene:MLOC_55628 transcript:MLOC_55628.1241380.01617.6252.5
5'     TTTGGGACGGAGGGAGTACTG        3'
|| ||o||||| |||||||||
3' TATAAATCCTTGCCTACCTCATGACCTGTGCC 5'
924Hordeum vulgareTATAGTACTCCCTCCGTCCGGalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_20184.2 cdna:novel chromosome:030312v2:3HS:1959986:1965218:1 gene:MLOC_20184 transcript:MLOC_20184.22184801863
5'     TATAGTACTCCCTCCGTCCGG        3'
o| |o|||||||||||| |||
3' AAAAGT-TTATGAGGGAGGCAAGCCTTTGTTC 5'
925Hordeum vulgareTTTTGGGACGGAGTGAGTATTalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_26643.6 cdna:novel chromosome:030312v2:4:90497913:90501180:1 gene:MLOC_26643 transcript:MLOC_26643.6211140.01111.571432.5
5'     TTTTGGGACGGAGTGAGTATT        3'
|||| |||||||| |||||o|
3' TCATAAAAGCCTGCCTCTCTCATGAGAGAATA 5'
926Hordeum vulgareTTTTGGGACGGAGGGAGTAACalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_26643.6 cdna:novel chromosome:030312v2:4:90497913:90501180:1 gene:MLOC_26643 transcript:MLOC_26643.6211140111.571432.5
5'     TTTTGGGACGGAGGGAGTAAC        3'
|||| ||||||||o||||| |
3' TCATAAAAGCCTGCCTCTCTCAT-GAGAGAAT 5'
927Hordeum vulgareTTTTGGAACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_26643.6 cdna:novel chromosome:030312v2:4:90497913:90501180:1 gene:MLOC_26643 transcript:MLOC_26643.6211140111.571432
5'     TTTTGGAACGGAGGGAGTA          3'
|||o|| ||||||o|||||
3' CATAAAAGCC-TGCCTCTCTCATGAGAGAATA 5'
928Hordeum vulgareGCCACCGCAGCCGCTGCCGCAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_43909.1 cdna:novel chromosome:030312v2:1:900801:906383:1 gene:MLOC_43909 transcript:MLOC_43909.1220880.05773
5'     GCCACCGCAGCCGCTGCCGCA        3'
||||||o| |||||o|||||
3' TGGTCGGTGGTG-CGGCGGCGGCGAGGACCAG 5'
929Hordeum vulgareAAGCCAAGGATGAGTTGCCTGalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_62730.2 cdna:known chromosome:030312v2:4:501096251:501099501:1 gene:MLOC_62730 transcript:MLOC_62730.22101409832.66672
5'     AAGCCAAGGATGAGTTGCCTG        3'
||||||||||||| ||||| |
3' TGTATTCGGTTCCTACTAAACGGTCCCCCGTT 5'
930Hordeum vulgareTACTACTCCCTCTGTCCCAAAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_16305.1 cdna:known chromosome:030312v2:7:423890823:423893423:1 gene:MLOC_16305 transcript:MLOC_16305.12470552
5'     TACTACTCCCTCTGTCCCAAA        3'
| ||||| |||||||||||||
3' ATGAAAGATGATGGAGACAGGGTTTTATTCAC 5'
931Hordeum vulgareCCGTTGAGTGCAGCGTTGATGalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_57090.1 cdna:novel chromosome:030312v2:6HS:3576185:3577861:-1 gene:MLOC_57090 transcript:MLOC_57090.1212850660
5'     CCGTTGAGTGCAGCGTTGATG        3'
|||||||||||||||||||||
3' CCACGGCAACTCACGTCGCAACTACTTGGCAG 5'
932Hordeum vulgareATTATGGAACGGAGGGAGTalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_3881.1 cdna:known chromosome:030312v2:5:482646165:482647970:-1 gene:MLOC_3881 transcript:MLOC_3881.1215340.05423
5'     ATTATGGAACGGAGGGAGT          3'
||| ||o||||o| |||||
3' AAGTTAA-ACTTTGCTTACCTCATGTTGTATC 5'
933Hordeum vulgareAAGCCAAGGATGAGTTGCCTGalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_76757.4 cdna:known chromosome:030312v2:5:17021024:17025606:1 gene:MLOC_76757 transcript:MLOC_76757.4016530457.53
5'     AAGCCAAGGATGAGTTGCCTG        3'
|||||||o||||o|||||oo
3' GGTACTCGGTTCTTACTTAACGGGTGCCTGTC 5'
934Hordeum vulgareAAGCCAAGGATGAGTTGCCTGalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_36554.1 cdna:known chromosome:030312v2:6:504853210:504857063:-1 gene:MLOC_36554 transcript:MLOC_36554.11957020200
5'     AAGCCAAGGATGAGTTGCCTG        3'
|||||||||||||||||||||
3' TTATTTCGGTTCCTACTCAACGGACTAGTAGT 5'
935Hordeum vulgareTTTTGGGACAGAGGGAGTAGAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_58251.5 cdna:known chromosome:030312v2:1:402469628:402477057:1 gene:MLOC_58251 transcript:MLOC_58251.5230680.01813
5'     TTTTGGGACAGAGGGAGTAGA        3'
||| || |||||||||||| |
3' TCATAAATCCATGTCTCCCTCAT-TGTCGCAT 5'
936Hordeum vulgareTTATGGGACAGAGGGAGTAATalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_58251.5 cdna:known chromosome:030312v2:1:402469628:402477057:1 gene:MLOC_58251 transcript:MLOC_58251.5230680.01812.5
5'     TTATGGGACAGAGGGAGTAAT        3'
||| || |||||||||||||o
3' CATAAAT-CCATGTCTCCCTCATTGTCGCATA 5'
937Hordeum vulgareTTATTTTGGGACGGAGGGAGTalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_62418.1 cdna:known chromosome:030312v2:1:405153016:405156721:-1 gene:MLOC_62418 transcript:MLOC_62418.121510332
5'     TTATTTTGGGACGGAGGGAGT        3'
||||| ||||||||||||||
3' CTGATATAAATCCCTGCCTCCCTCATCTAGGA 5'
938Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_57414.3 cdna:known chromosome:030312v2:4:530999410:531002030:-1 gene:MLOC_57414 transcript:MLOC_57414.3212650165.333333
5'     TATTATGGGACGGAGGGAGTA        3'
|||| |||o||o| |||||||
3' GTAAATAAAACCTTGTCCCCCTCATCATCTCC 5'
939Hordeum vulgareATTATGGAACGGAGGGAGTalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_4326.11 cdna:novel chromosome:030312v2:5:483673941:483679038:1 gene:MLOC_4326 transcript:MLOC_4326.1121720.01622
5'     ATTATGGAACGGAGGGAGT          3'
||| ||| |||||||||||
3' TAAATAAAACCCTGCCTCCCTCATCTAGAAAG 5'
940Hordeum vulgareCGCAGCTGTAGTCGCCGGCGTalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_65066.2 cdna:novel chromosome:030312v2:2:233087088:233088804:-1 gene:MLOC_65066 transcript:MLOC_65066.225100.02227.333333
5'     CGCAGCTGTAGTCGCCGGCGT        3'
|| |||o||||||||||o||
3' CCCAGCTTCGGCATCAGCGGCTGCTCGCACGG 5'
941Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_56507.1 cdna:novel chromosome:030312v2:2:24894587:24898152:1 gene:MLOC_56507 transcript:MLOC_56507.111143040.82
5'     TATTATGGGACGGAGGGAGTA        3'
o||||||||| |o||||||||
3' GAATGTAATACCCTCCTTCCCTCATTCTTAAT 5'
942Hordeum vulgareTATTTGCAGGTTTTAGGTCTAAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_70446.3 cdna:novel chromosome:030312v2:7:2801779:2804764:1 gene:MLOC_70446 transcript:MLOC_70446.3013630253.1252.5
5'     TATTTGCAGGTTTTAGGTCTAA       3'
o||||||||||||||o|||o|
3' TTTTGTAAACGTCCAAAATTCAGGTCTACCTT 5'
943Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_65095.2 cdna:novel chromosome:030312v2:4HL:22603070:22604387:-1 gene:MLOC_65095 transcript:MLOC_65095.2111590.01175.666671.5
5'     TATTATGGGACGGAGGGAGTA        3'
|||| |||||||o||||||||
3' ATGAATAAAACCCTGCTTCCCTCATCATAGAT 5'
944Hordeum vulgareGGGAGTGGGAGTGGGAGTGGGalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_4689.1 cdna:novel chromosome:030312v2:4HS:3687378:3687747:-1 gene:MLOC_4689 transcript:MLOC_4689.112720.05214
5'     GGGAGTGGGAGTGGGAGTGGG        3'
|| |||||||||||o| o ||
3' ACGCCCGTCACCCTCACCTTGGACCGCCGCTA 5'
945Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_58552.5 cdna:novel chromosome:030312v2:2:475555959:475559690:-1 gene:MLOC_58552 transcript:MLOC_58552.52466040.82
5'     TATTATGGGACGGAGGGAGTA        3'
o||||||||||o| |||||||
3' GAATGTAATACCCTGTCGCCCTCATTAAAGAT 5'
946Hordeum vulgareTCGGACCAGGCTTCATTCCalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_61603.3 cdna:known chromosome:030312v2:1:192064052:192072095:-1 gene:MLOC_61603 transcript:MLOC_61603.301046080161
5'     TCGGACCAGGCTTCATTCC          3'
o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTCCGTAGCC 5'
947Hordeum vulgareTCGGACCAGGCTTCATTCCCalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_61603.3 cdna:known chromosome:030312v2:1:192064052:192072095:-1 gene:MLOC_61603 transcript:MLOC_61603.301046080161.5
5'     TCGGACCAGGCTTCATTCCC         3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAGC 5'
948Hordeum vulgareTCGGACCAGGCTTCATTCCalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_44268.1 cdna:known chromosome:030312v2:2:540255156:540257216:1 gene:MLOC_44268 transcript:MLOC_44268.113020883
5'     TCGGACCAGGCTTCATTCC          3'
||||||||||||| |||
3' TCTTTGCCTGGTCCGAAGGAAGTGGCGGCACC 5'
949Hordeum vulgareTCGGACCAGGCTTCATTCCalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_33978.4 cdna:novel chromosome:030312v2:5:492709362:492713465:-1 gene:MLOC_33978 transcript:MLOC_33978.406220657.222221
5'     TCGGACCAGGCTTCATTCC          3'
o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTTGGTAAAC 5'
950Hordeum vulgareTCGGACCAGGCTTCATTCCCalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_33978.4 cdna:novel chromosome:030312v2:5:492709362:492713465:-1 gene:MLOC_33978 transcript:MLOC_33978.406220657.222221.5
5'     TCGGACCAGGCTTCATTCCC         3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTTGGTAAA 5'
951Hordeum vulgareCTTCCGTCCCAAAATAAGTGAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_75925.3 cdna:known chromosome:030312v2:3HL:6935342:6940187:1 gene:MLOC_75925 transcript:MLOC_75925.3217900.021233
5'     CTTCCGTCCCAAAATAAGTGA        3'
||||||||||||||||||
3' TGAAACAGGCAGGGTTTTATTCACAGAGTTGA 5'
952Hordeum vulgareACTCCCTCTGTCCCAAAATAGalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_32803.1 cdna:novel chromosome:030312v2:5:559812611:559815128:-1 gene:MLOC_32803 transcript:MLOC_32803.121588052.51
5'     ACTCCCTCTGTCCCAAAATAG        3'
||||||||||| |||||||||
3' ATGATGAGGGAGACAAGGTTTTATCCACAGAG 5'
953Hordeum vulgareGCCACCGCAGCCGCTGCCGCAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_54588.1 cdna:known chromosome:030312v2:3:423499986:423508987:1 gene:MLOC_54588 transcript:MLOC_54588.122440842
5'     GCCACCGCAGCCGCTGCCGCA        3'
|||||||| |||||||||||
3' GGTCCGGTGGCGACGGCGACGGCGGCGGTGGG 5'
954Hordeum vulgareTTTTGGAACGGAGGGAGTATCalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_26643.10 cdna:novel chromosome:030312v2:4:90497928:90501178:1 gene:MLOC_26643 transcript:MLOC_26643.1029750.05111.571433.5
5'     TTTTGGAACGGAGGGAGTATC        3'
|||o|| ||||||o|||||o
3' CATAAAAGCC-TGCCTCTCTCATGAGAGAATA 5'
955Hordeum vulgareAATGCTCATATGCATCACAATalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_13246.3 cdna:novel chromosome:030312v2:7:21323731:21327547:1 gene:MLOC_13246 transcript:MLOC_13246.308480.05196.333334
5'     AATGCTCATATGCATCACAAT        3'
|| |o||||o||| ||||||
3' GTAAATA-GGGTATGCGTTGTGTTATCACAAG 5'
956Hordeum vulgareCTCTGTAAACTAATATAAGACalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_73290.2 cdna:novel chromosome:030312v2:6:178934013:178934653:-1 gene:MLOC_73290 transcript:MLOC_73290.20980.02136.54
5'    CTCTGTAAA-CTAATATAAGAC        3'
||||||||| |o||o|||| |
3' TAGGAGACATTTAGGTTGTATTGAGTATAGTG 5'
957Hordeum vulgareTATAGTACTCCCTCCGTCCCGalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_9522.1 cdna:novel chromosome:030312v2:1:124351345:124353037:1 gene:MLOC_9522 transcript:MLOC_9522.127140.0113132.5
5'     TATAGTACTCCCTCCGTCCCG        3'
||| |||||||||||||||o
3' TCATCTATGATGAGGGAGGCAGGGTATTTTCA 5'
958Hordeum vulgareTGACAGAAGAGAGTGAGCACAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_37841.2 cdna:known chromosome:030312v2:7:214318191:214323478:1 gene:MLOC_37841 transcript:MLOC_37841.226380631
5'     TGACAGAAGAGAGTGAGCACA        3'
||||||||||||| |||||||
3' CTCGACTGTCTTCTCTCTCTCGTGTCAGGCTC 5'
959Hordeum vulgareTTTTGGGACAGAGGAAGTACTalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_5651.2 cdna:known chromosome:030312v2:4:87404865:87410843:-1 gene:MLOC_5651 transcript:MLOC_5651.2221070.01843
5'     TTTTGGGACAGAGGAAGTACT        3'
||| || |||||||||||||
3' CAATAAATCCATGTCTCCTTCATGTGGATATC 5'
960Hordeum vulgareTTATGGGACAGAGGGAGTACAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_5651.2 cdna:known chromosome:030312v2:4:87404865:87410843:-1 gene:MLOC_5651 transcript:MLOC_5651.2221070842.5
5'     TTATGGGACAGAGGGAGTACA        3'
||| || |||||||o||||||
3' AATAAAT-CCATGTCTCCTTCATGTGGATATC 5'
961Hordeum vulgareCTGACAGAAGAGAGTGAGCACalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_61297.1 cdna:known chromosome:030312v2:7:224856072:224859310:-1 gene:MLOC_61297 transcript:MLOC_61297.127880.01622
5'     CTGACAGAAGAGAGTGAGCAC        3'
||||||||||||| ||||||
3' ACTCAACTGTCTTCTCTCTCTCGTGTCGACCT 5'
962Hordeum vulgareATGCGACAAGTAATTCCGAATalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_20389.2 cdna:novel chromosome:030312v2:3HS:22824816:22825946:1 gene:MLOC_20389 transcript:MLOC_20389.228840.03113.666673
5'     ATGCGACAAGTAATTCCGAAT        3'
||||||| ||o|||| |o|||
3' TATGTACGCTGATCGTTAATGTTTAAGGGAGG 5'
963Hordeum vulgareTTTTGGGTCAGAGGGAGTATCalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_54045.8 cdna:novel chromosome:030312v2:7:380757072:380758954:1 gene:MLOC_54045 transcript:MLOC_54045.8011908929.66673.5
5'     TTTTGGGTCAGAGGGAGTATC        3'
|||o||| |||||||||||
3' TTCATAAATCCA-TCTCCCTCATATATTTTTC 5'
964Hordeum vulgareTGATTGAGCCGTGCCAATATalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_16514.1 cdna:novel chromosome:030312v2:7:2773139:2774808:1 gene:MLOC_16514 transcript:MLOC_16514.1238017170.5
5'     TGATTGAGCCGTGCCAATAT         3'
|||||||||||o||||||||
3' GGCCACTAACTCGGCGCGGTTATAGAGCGCGC 5'
965Hordeum vulgareTGTTACTCCCTCCGTCCGAAAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_14460.1 cdna:novel chromosome:030312v2:2:547147066:547152122:1 gene:MLOC_14460 transcript:MLOC_14460.1229350.012914.53.5
5'     TGTTACTCCCTCCGTCCGAAA        3'
||||| || ||||o|||| ||
3' TTTGACAATAAGCGAGGTAGGCCTTTTACCCT 5'
966Hordeum vulgareATTATGGAACGGAGGGAGTalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_69582.1 cdna:novel chromosome:030312v2:2HS:406041:407531:1 gene:MLOC_69582 transcript:MLOC_69582.121378010102
5'     ATTATGGAACGGAGGGAGT          3'
||| ||| |||||||||||
3' TTAATAAAACCCTGCCTCCCTCATATTGTATC 5'
967Hordeum vulgareATATTATGGGACGGAGGGAGGalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_13746.1 cdna:novel chromosome:030312v2:7HS:12098986:12101271:-1 gene:MLOC_13746 transcript:MLOC_13746.12636094.52.5
5'     ATATTATGGGACGGAGGGAGG        3'
||||||o|||||||| ||||
3' AGAATATAATGCCCTGCCTACCTCATCTAATA 5'
968Hordeum vulgareATACTCTCTCCGTCCCAGAATalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_80569.1 cdna:known chromosome:030312v2:4:455650531:455651768:-1 gene:MLOC_80569 transcript:MLOC_80569.129640.0514143.5
5'     ATACTCTCTCCGTCCCAGAAT        3'
||| |||| |||||||||| o
3' TGAGTAT-AGAGCGGCAGGGTCTCGAGGAGCT 5'
969Hordeum vulgareTTTTGGAACGGAGGGAGTATAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_26643.8 cdna:novel chromosome:030312v2:4:90497928:90501178:1 gene:MLOC_26643 transcript:MLOC_26643.8210760.05111.571433.5
5'     TTTTGGAACGGAGGGAGTATA        3'
|||o|| ||||||o|||||o
3' CATAAAAGCC-TGCCTCTCTCATGAGAGAATA 5'
970Hordeum vulgareTGACAGAAGAGAGTGAGCACAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_52321.2 cdna:known chromosome:030312v2:3:518753339:518756802:-1 gene:MLOC_52321 transcript:MLOC_52321.20690084211
5'     TGACAGAAGAGAGTGAGCACA        3'
||||||||||||| |||||||
3' ACAGACTGTCTTCTCTCTCTCGTGTCAACACC 5'
971Hordeum vulgareCTGACAGAAGAGAGTGAGCACalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_52321.2 cdna:known chromosome:030312v2:3:518753339:518756802:-1 gene:MLOC_52321 transcript:MLOC_52321.226910411
5'     CTGACAGAAGAGAGTGAGCAC        3'
|||||||||||||| ||||||
3' AACAGACTGTCTTCTCTCTCTCGTGTCAACAC 5'
972Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_6897.4 cdna:known chromosome:030312v2:7:547221774:547225949:1 gene:MLOC_6897 transcript:MLOC_6897.421243012763.52
5'     TATTATGGGACGGAGGGAGTA        3'
|||||||| |||||||| |||
3' GTATATAATACCGTGCCTCCCCCATCAATGTT 5'
973Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_58213.4 cdna:novel chromosome:030312v2:4:491585850:491587608:-1 gene:MLOC_58213 transcript:MLOC_58213.421469030.751
5'     TATTATGGGACGGAGGGAGTA        3'
|||| ||||||||||||||||
3' GTTAATAAAACCCTGCCTCCCTCATGACATAT 5'
974Hordeum vulgareATTATGGAACGGAGGGAGTalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_6897.4 cdna:known chromosome:030312v2:7:547221774:547225949:1 gene:MLOC_6897 transcript:MLOC_6897.4212420.01115.52
5'     ATTATGGAACGGAGGGAGT          3'
||||||| |||||||| ||
3' TATATAATACCGTGCCTCCCCCATCAATGTTT 5'
975Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_72849.6 cdna:known chromosome:030312v2:5:32062940:32069184:-1 gene:MLOC_72849 transcript:MLOC_72849.62870091.82
5'     TATTATGGGACGGAGGGAGTA        3'
|||| |||||||||||||| |
3' GTGAATAAAACCCTGCCTCCCTCCTATACTGT 5'
976Hordeum vulgareAAGCCAAGGATGAGTTGCCTGalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_24655.1 cdna:novel chromosome:030312v2:5HL:34097857:34099120:1 gene:MLOC_24655 transcript:MLOC_24655.127400.0115152.5
5'     AAGCCAAGGATGAGTTGCCTG        3'
|||||||o|||| |||||||
3' TCATCTCGGTTCTTACTAAACGGACGTCCGTT 5'
977Hordeum vulgareAGGGTCATCTGTGACGGGCTCalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_55673.10 cdna:known chromosome:030312v2:2:379955737:379958978:-1 gene:MLOC_55673 transcript:MLOC_55673.10213170.01165.333333
5'     AGGGTCATCTGTGACGGGCTC        3'
|||o|||||||||||o| ||
3' CAGGTCCTAGTAGACACTGTCGAAGAAGAGGT 5'
978Hordeum vulgareTCCCTCTGTAAAGAAATAAAAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_56418.3 cdna:known chromosome:030312v2:4:419972008:419977821:1 gene:MLOC_56418 transcript:MLOC_56418.3232090.0120202.5
5'     TCCCTCTGTAAAGAAATAAAA        3'
||||||o||||||||||| |
3' CATTAGGGAGGCATTTCTTTATACTCACAAAT 5'
979Hordeum vulgareTCCCTCTGTAAACAAATATAGalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_56418.3 cdna:known chromosome:030312v2:4:419972008:419977821:1 gene:MLOC_56418 transcript:MLOC_56418.323209020202.5
5'     TCCCTCTGTAAACAAATATAG        3'
||||||o||||| |||||| |
3' CATTAGGGAGGCATTTCTTTATA-CTCACAAA 5'
980Hordeum vulgareTCGGACCAGGCTTCATTCCalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_58644.2 cdna:novel chromosome:030312v2:5:32050369:32056315:-1 gene:MLOC_58644 transcript:MLOC_58644.228090657.222220.5
5'     TCGGACCAGGCTTCATTCC          3'
o||||||||||||||||||
3' CTTAGGCCTGGTCCGAAGTAAGGGTAGTAAAC 5'
981Hordeum vulgareAAACATAGAGAAGTATGACTTalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_57585.6 cdna:novel chromosome:030312v2:7:568935343:568939061:-1 gene:MLOC_57585 transcript:MLOC_57585.6115330333.5
5'     AAACATAGAGAAGTATGACTT        3'
||||| ||||||| | |||o|
3' TTAGTTTGTCTCTCTTCCT-CTGGACTTTAAT 5'
982Hordeum vulgareTATAGTACTCCCTCCGTCCCGalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_59190.1 cdna:novel chromosome:030312v2:4:491510721:491518872:-1 gene:MLOC_59190 transcript:MLOC_59190.1229340.0294.53.5
5'    TATA-GTACTCCCTCCGTCCCG        3'
|||| |||||||||||| ||o
3' TATATATCCATGAGGGAGGCTAGGTATAATTT 5'
983Hordeum vulgareTTTTGGGACGGAGTGAGTATTalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_72849.6 cdna:known chromosome:030312v2:5:32062940:32069184:-1 gene:MLOC_72849 transcript:MLOC_72849.628680.05183.63
5'     TTTTGGGACGGAGTGAGTATT        3'
||||||||||||| ||| ||
3' GAATAAAACCCTGCCTCCCTCCTATACTGTGG 5'
984Hordeum vulgareTTTTGGAACGGAGGGAGTACTalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_72849.6 cdna:known chromosome:030312v2:5:32062940:32069184:-1 gene:MLOC_72849 transcript:MLOC_72849.628680.01183.63
5'     TTTTGGAACGGAGGGAGTACT        3'
|||||| |||||||||| | |
3' GAATAAAACCCTGCCTCCCTCCT-ATACTGTG 5'
985Hordeum vulgareTTTGGGACGGAGGGAGTACTGalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_69670.1 cdna:known chromosome:030312v2:7HS:11964591:11968606:-1 gene:MLOC_69670 transcript:MLOC_69670.1216360842
5'     TTTGGGACGGAGGGAGTACTG        3'
|||||o|||||||||||| |o
3' AATAAAACCTTGCCTCCCTCAT-ATTATTAAA 5'
986Hordeum vulgareTATGGGACGGAGGGAGTATCTalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_69670.1 cdna:known chromosome:030312v2:7HS:11964591:11968606:-1 gene:MLOC_69670 transcript:MLOC_69670.1216360.03843.5
5'     TATGGGACGGAGGGAGTATCT        3'
| |||o|||||||||||||
3' AATAAAACCTTGCCTCCCTCATATTATTAAAA 5'
987Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_69518.1 cdna:novel chromosome:030312v2:7:523831801:523835346:1 gene:MLOC_69518 transcript:MLOC_69518.121103091.81
5'     TATTATGGGACGGAGGGAGTA        3'
|||| ||||||||||||||||
3' GTGAATAAAACCCTGCCTCCCTCATAAAGAAA 5'
988Hordeum vulgareTGATTGAGCCGTGCCAATATalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_43989.1 cdna:novel chromosome:030312v2:6HL:11132556:11134798:1 gene:MLOC_43989 transcript:MLOC_43989.12903026130.5
5'     TGATTGAGCCGTGCCAATAT         3'
|||||||||||o||||||||
3' GACCACTAACTCGGCGCGGTTATAGAGTGCGC 5'
989Hordeum vulgareATACTCCCTTCGTTCCAAAATalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_60590.1 cdna:known chromosome:030312v2:5:438053681:438055320:-1 gene:MLOC_60590 transcript:MLOC_60590.1211250.0220203
5'     ATACTCCCTTCGTTCCAAAAT        3'
|||| ||||| ||| ||||||
3' ATCGTATGTGGGAA-CAACGTTTTAGTGTAAT 5'
990Hordeum vulgareTTTTGGGACGGAGTGAGTATTalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_69518.1 cdna:novel chromosome:030312v2:7:523831801:523835346:1 gene:MLOC_69518 transcript:MLOC_69518.1211010183.61
5'     TTTTGGGACGGAGTGAGTATT        3'
||||||||||||| |||||||
3' GAATAAAACCCTGCCTCCCTCATAAAGAAAAG 5'
991Hordeum vulgareTTTTGGGACGGAGTGAGTATTalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_66594.2 cdna:novel chromosome:030312v2:6:167557563:167563549:-1 gene:MLOC_66594 transcript:MLOC_66594.222870183.62
5'     TTTTGGGACGGAGTGAGTATT        3'
||||||||||||| ||||| |
3' GAATAAAACCCTGCCTCCCTCATCAAACGTTG 5'
992Hordeum vulgareTATAGTACTCCCTCCGTCCCGalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_6070.4 cdna:known chromosome:030312v2:6HS:2185538:2188313:1 gene:MLOC_6070 transcript:MLOC_6070.4216810.01333.5
5'     TATAGTACTCCCTCCGTCCCG        3'
||| |||||||||||| ||o
3' CGTTTTATGATGAGGGAGGCAAGGTTTTNNNN 5'
993Hordeum vulgareTTTTGGGACGGAGTGAGTATTalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_40346.1 cdna:novel chromosome:030312v2:7HS:34897922:34898994:-1 gene:MLOC_40346 transcript:MLOC_40346.121910.0131.53
5'     TTTTGGGACGGAGTGAGTATT        3'
||||||||||||| o||||o
3' GAATAAAACCCTGCCTCCTTCATGTCATATTA 5'
994Hordeum vulgareTTTTGGGACGGAGGGAGTAACalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_40346.1 cdna:novel chromosome:030312v2:7HS:34897922:34898994:-1 gene:MLOC_40346 transcript:MLOC_40346.12191031.51.5
5'     TTTTGGGACGGAGGGAGTAAC        3'
||||||||||||||o|||| |
3' GAATAAAACCCTGCCTCCTTCAT-GTCATATT 5'
995Hordeum vulgareTGACAGAAGAGAGTGAGCACAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_13032.1 cdna:novel contig:220312v1:morex_contig_1564635:477:3263:1 gene:MLOC_13032 transcript:MLOC_13032.127500.03553
5'     TGACAGAAGAGAGTGAGCACA        3'
||||||||||||| |||||
3' ACGTACTGTCTTCTCTCCCTCGTACGAATCCA 5'
996Hordeum vulgareTTATTTTGGGACGGAGGGAGTalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_10723.3 cdna:novel chromosome:030312v2:2:605996561:605997943:-1 gene:MLOC_10723 transcript:MLOC_10723.31911010100
5'     TTATTTTGGGACGGAGGGAGT        3'
|||||||||||||||||||||
3' AGTGAATAAAACCCTGCCTCCCTCATATAATC 5'
997Hordeum vulgareTTTGGATTGAAGGGAGCTCTGalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_71332.1 cdna:novel chromosome:030312v2:3:466323274:466326190:-1 gene:MLOC_71332 transcript:MLOC_71332.128690.0164322.5
5'     TTTGGATTGAAGGGAGCTCTG        3'
o||||| ||||||||||||oo
3' CATAGAACCTCACTTCCCTCGAGGTAGAAGTT 5'
998Hordeum vulgareTGCAGTTGTTGCCTCATGCTTalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_16182.1 cdna:novel chromosome:030312v2:7HL:17469123:17471345:-1 gene:MLOC_16182 transcript:MLOC_16182.101441024242.5
5'     TGCAGTTGTTGCCTCATGCTT        3'
|||||o||o||||||| |||o
3' GTATACGTCGACGACGGAGTTCGAGAGTGAGG 5'
999Hordeum vulgareTGCAGTTGCTGTCTCAAGCTTalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_36835.2 cdna:known chromosome:030312v2:3HL:7674503:7678074:1 gene:MLOC_36835 transcript:MLOC_36835.206440.021053.5
5'     TGCAGTTGCTGTCTCAAGCTT        3'
|||||||||||o|o||| |o
3' TCTTACGTCAACGACGGGGTTAGGTCGACTAG 5'
1000Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_14970.2 cdna:novel chromosome:030312v2:6HL:8061294:8064196:1 gene:MLOC_14970 transcript:MLOC_14970.221597011112.5
5'     TATTATGGGACGGAGGGAGTA        3'
|||| ||o|||oo||||||||
3' GTAAATAAAACTCTGTTTCCCTCATGTACTGT 5'
1001Hordeum vulgareTTTGGGACGGAGGGAGTACTGalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_22135.1 cdna:novel chromosome:030312v2:5:525347519:525349048:-1 gene:MLOC_22135 transcript:MLOC_22135.1214070.03843
5'     TTTGGGACGGAGGGAGTACTG        3'
|||||o||||||o|||o| |o
3' AATAAAACCTTGCCTCTCTCGTCATGTAATAT 5'
1002Hordeum vulgareTTTTGGGACGGAGGGAGTATalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_76689.9 cdna:novel chromosome:030312v2:6:484423834:484425583:-1 gene:MLOC_76689 transcript:MLOC_76689.921497031.52.5
5'     TTTTGGGACGGAGGGAGTAT         3'
||| ||o|||o||||||||o
3' TTATAAATCCTTGCTTCCCTCATGATTGATGG 5'
1003Hordeum vulgareTTTTGGGACGGAGGGAGTAACalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_76689.9 cdna:novel chromosome:030312v2:6:484423834:484425583:-1 gene:MLOC_76689 transcript:MLOC_76689.9214970.0131.53
5'     TTTTGGGACGGAGGGAGTAAC        3'
||| ||o|||o|||||||| |
3' TTATAAATCCTTGCTTCCCTCAT-GATTGATG 5'
1004Hordeum vulgareTTATTTTGGGACGGAGGGAGTalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_20818.1 cdna:known chromosome:030312v2:7:322531768:322533960:1 gene:MLOC_20818 transcript:MLOC_20818.12104018180
5'     TTATTTTGGGACGGAGGGAGT        3'
|||||||||||||||||||||
3' TGTGAATAAAACCCTGCCTCCCTCATCATAAT 5'
1005Hordeum vulgareTTTTGGGACGGAGTGAGTATTalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_72495.1 cdna:known chromosome:030312v2:3:542235938:542240994:1 gene:MLOC_72495 transcript:MLOC_72495.121798016162
5'     TTTTGGGACGGAGTGAGTATT        3'
||||o|||||||| |||||o|
3' CAATAAAATCCTGCCTCCCTCATGATGCTTTC 5'
1006Hordeum vulgareTTTTGGGACGGAGGGAGTAACalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_72495.1 cdna:known chromosome:030312v2:3:542235938:542240994:1 gene:MLOC_72495 transcript:MLOC_72495.121798016161.5
5'     TTTTGGGACGGAGGGAGTAAC        3'
||||o|||||||||||||| |
3' CAATAAAATCCTGCCTCCCTCAT-GATGCTTT 5'
1007Hordeum vulgareTTTAGGAACGGAGTGAGTAGTalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_72495.1 cdna:known chromosome:030312v2:3:542235938:542240994:1 gene:MLOC_72495 transcript:MLOC_72495.1217980.0316163
5'     TTTAGGAACGGAGTGAGTAGT        3'
|||||| |||||| ||||| |
3' AATAAAATCC-TGCCTCCCTCATGATGCTTTC 5'
1008Hordeum vulgareTTTGGGACGGAGGGAGTACTGalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_13576.3 cdna:novel chromosome:030312v2:2:432768357:432771331:1 gene:MLOC_13576 transcript:MLOC_13576.3222840.05617.6253.5
5'     TTTGGGACGGAGGGAGTACTG        3'
|| ||o||||| |||||| ||
3' TATAAATCCTTGCCTACCTCAT-ACTCAGATG 5'
1009Hordeum vulgareTTTGGGACGGAGGGAGTACTGalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_53358.5 cdna:known chromosome:030312v2:1:271628792:271630780:-1 gene:MLOC_53358 transcript:MLOC_53358.5217820617.6252.5
5'     TTTGGGACGGAGGGAGTA-CTG       3'
|| ||o|||||||||||| |||
3' TATAAATCCTTGCCTCCCTCATAGACTATCCT 5'
1010Hordeum vulgareTATGGGACGGAGGGAGTATCTalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_53358.5 cdna:known chromosome:030312v2:1:271628792:271630780:-1 gene:MLOC_53358 transcript:MLOC_53358.5217820617.6251.5
5'     TATGGGACGGAGGGAGTATCT        3'
|| ||o|||||||||||||||
3' ATAAAT-CCTTGCCTCCCTCATAGACTATCCT 5'
1011Hordeum vulgareTTATTTTGGGACGGAGGGAGTalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_34489.5 cdna:novel chromosome:030312v2:1H:14966757:14969573:1 gene:MLOC_34489 transcript:MLOC_34489.5227580115.52.5
5'     TTATTTTGGGACGGAGGGAGT        3'
|o|||o|||||| ||o|||||
3' AGTGAGTAAGACCCTGACTTCCTCATGTTTTA 5'
1012Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_52671.1 cdna:known chromosome:030312v2:4:473729757:473733382:-1 gene:MLOC_52671 transcript:MLOC_52671.1212940.0118183
5'     TATTATGGGACGGAGGGAGTA        3'
|||| |||o||| |o||||||
3' GTTCATAAAACCTTGCGTTCCTCATATATCTT 5'
1013Hordeum vulgareTTTGGGACGGAGGGAGTACTGalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_37946.5 cdna:novel chromosome:030312v2:5:188989229:188992900:1 gene:MLOC_37946 transcript:MLOC_37946.521880.01822.5
5'     TTTGGGACGGAGGGAGTACTG        3'
||||||||o||||||||| |
3' AATAAAACCCTGTCTCCCTCATAAACAGATCA 5'
1014Hordeum vulgareTGTACTCCCTCCGTTCCTAAAalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_67470.1 cdna:known chromosome:030312v2:2:576417261:576422103:-1 gene:MLOC_67470 transcript:MLOC_67470.1219860.0118183
5'     TGTACTCCCTCCGTTCCTAAA        3'
|||||||||||| ||||||
3' AAGATGATGAGGGAGGCA-GGATTTTATTCNN 5'
1015Hordeum vulgareTATACTCCCTCCGTCCGAAATalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_67470.1 cdna:known chromosome:030312v2:2:576417261:576422103:-1 gene:MLOC_67470 transcript:MLOC_67470.1219860.0118183
5'    TA-TACTCCCTCCGTCCGAAAT        3'
|| |||||||||||||| |||
3' AAGATGATGAGGGAGGCAGGATTTTATTCNNN 5'
1016Hordeum vulgareTTTGGGACGGAGGGAGTACTGalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_78409.3 cdna:novel chromosome:030312v2:5:560101869:560105791:1 gene:MLOC_78409 transcript:MLOC_78409.3224640822
5'     TTTGGGACGGAGGGAGTACTG        3'
||||||||o||||||||| |o
3' AATAAAACCCTGTCTCCCTCATCATTATTTAT 5'
1017Hordeum vulgareCTCCGTTCCTAAATATAAGTTalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_72099.7 cdna:novel chromosome:030312v2:5:545657294:545660369:1 gene:MLOC_72099 transcript:MLOC_72099.721160.0131.52.5
5'     CTCCGTTCCTAAATATA-AGTT       3'
||||||||||||||||| |o |
3' GAGGGAGGCAAGGATTTATATATTCAAATAGC 5'
1018Hordeum vulgareCTTATATTATGGGACGGAGGGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_5727.1 cdna:novel chromosome:030312v2:1:440381374:440383150:-1 gene:MLOC_5727 transcript:MLOC_5727.109910550
5'     CTTATATTATGGGACGGAGGG        3'
|||||||||||||||||||||
3' GCAAGAATATAATACCCTGCCTCCCTCATAAA 5'
1019Hordeum vulgareTATGGGACGGAGGGAGTATCTalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_78266.1 cdna:novel chromosome:030312v2:3HL:8993115:8994352:-1 gene:MLOC_78266 transcript:MLOC_78266.1212060.0594.53.5
5'     TATGGGACGGAGGGAGTATCT        3'
|| ||o||||||| ||||| |
3' ATAAAT-CCTTGCCTCCATCATATAAAAACGT 5'
1020Hordeum vulgareTATACTCCCTCCGTCCGAAATalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_26643.6 cdna:novel chromosome:030312v2:4:90497913:90501180:1 gene:MLOC_26643 transcript:MLOC_26643.6212140.01131.857143
5'     TATACTCCCTCCGTCCGAAAT        3'
o||||||||| |o|||| |||
3' TGATGTATGAGGGAAGTAGGCCTTAATGAACA 5'
1021Hordeum vulgareTATAGTACTCCCTCCGTCCGGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_26643.6 cdna:novel chromosome:030312v2:4:90497913:90501180:1 gene:MLOC_26643 transcript:MLOC_26643.6212170.012133
5'     TATAGTACTCCCTCCGTCCGG        3'
||o| |||||||| |o|||||
3' TATGATGT-ATGAGGGAAGTAGGCCTTAATGA 5'
1022Hordeum vulgareTTTGGCACCTTGAAACTGGGAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_57965.4 cdna:novel chromosome:030312v2:2:568452460:568455916:-1 gene:MLOC_57965 transcript:MLOC_57965.409100223.666673
5'     TTTGGCACCTTGAAACTGGGA        3'
|o||o|| |||||| ||||||
3' AAGAAGACTGTTGAACTTCGACCCTTTCTTAT 5'
1023Hordeum vulgareTTTGGGACGGAGGGAGTACTGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_26643.6 cdna:novel chromosome:030312v2:4:90497913:90501180:1 gene:MLOC_26643 transcript:MLOC_26643.6211130202.857142.5
5'     TTTGGGACGGAGGGAGTACTG        3'
||| ||||||||o|||||||
3' CATAAAAGCCTGCCTCTCTCATGAGAGAATAG 5'
1024Hordeum vulgareCTCCGTTCCTAAATATAAGTTalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_52639.4 cdna:novel chromosome:030312v2:7:533269741:533273012:1 gene:MLOC_52639 transcript:MLOC_52639.4213650412.5
5'     CTCCGTTCCTAAATATAAGTT        3'
|||||||||||||||o |||
3' GAGGGAGGCAAGGATTTATGAACAACAACCCC 5'
1025Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_48886.1 cdna:novel contig:220312v1:morex_contig_331488:20:2271:1 gene:MLOC_48886 transcript:MLOC_48886.121120552
5'     TATTATGGGACGGAGGGAGTA        3'
|||| ||||| ||||||||||
3' GTGAATAAAACCCTACCTCCCTCATGTTTTAT 5'
1026Hordeum vulgareTGCAGTTGCTGCCTCAAGCTTalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_22069.3 cdna:novel chromosome:030312v2:3HL:6136111:6138507:1 gene:MLOC_22069 transcript:MLOC_22069.327830.02121.714292.5
5'     TGCAGTTGCTGCCTCAAGCTT        3'
oo|||||||||||||| |||o
3' AAAGGTGTCAACGACGGAGT-CGAGTACTTCT 5'
1027Hordeum vulgareTGTACTCCCTCCGTTCCTAAAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_63462.2 cdna:known chromosome:030312v2:2:53816820:53821954:1 gene:MLOC_63462 transcript:MLOC_63462.2218250.021053
5'     TGTACTCCCTCCGTTCCTAAA        3'
| ||||||||||o|o|| |||
3' TAATAGATGAGGGAGGTAGGGTTTTATTCACA 5'
1028Hordeum vulgareTCCACAGGCTTTCTTGAACTGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_67201.1 cdna:known chromosome:030312v2:4:31377429:31381415:-1 gene:MLOC_67201 transcript:MLOC_67201.1172209732.33332
5'     TCCACAGGCTTTCTTGAACTG        3'
|||||| |||||||||||| |
3' CGGAAGGTGTACGAAAGAACTTG-CTACCGCA 5'
1029Hordeum vulgareTCGGACCAGGCTTCATTCCalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_79063.2 cdna:novel chromosome:030312v2:3:89144249:89147977:-1 gene:MLOC_79063 transcript:MLOC_79063.20146015216.88891
5'     TCGGACCAGGCTTCATTCC          3'
o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTCCGTAAAC 5'
1030Hordeum vulgareTCGGACCAGGCTTCATTCCCalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_79063.2 cdna:novel chromosome:030312v2:3:89144249:89147977:-1 gene:MLOC_79063 transcript:MLOC_79063.20146015216.88891.5
5'     TCGGACCAGGCTTCATTCCC         3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAAA 5'
1031Hordeum vulgareAGTACTTCCTCCGTCCCAAAAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_10600.5 cdna:novel chromosome:030312v2:6:354028574:354033288:-1 gene:MLOC_10600 transcript:MLOC_10600.5216130.011053
5'     AGTACTTCCTCCGTCCCAAAA        3'
| ||||||||| || ||||||
3' TTAGT-ATGAAGGAGACATGGTTTTATTAACA 5'
1032Hordeum vulgareAATACTTCCTCCGTCCCAAAAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_10600.5 cdna:novel chromosome:030312v2:6:354028574:354033288:-1 gene:MLOC_10600 transcript:MLOC_10600.5216130.011053
5'     AATACTTCCTCCGTCCCAAAA        3'
|||||||||| || ||||||
3' CTTAGTATGAAGGAGACATGGTTTTATTAACA 5'
1033Hordeum vulgareTGACAGAAGAGAGTGAGCACAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_11199.7 cdna:known chromosome:030312v2:6HS:3424827:3430372:-1 gene:MLOC_11199 transcript:MLOC_11199.7027910527.428573
5'     TGACAGAAGAGAGTGAGCACA        3'
||||||||||||| |||||
3' ACGAACTGTCTTCTCTCTCTCGTACGACTTCT 5'
1034Hordeum vulgareTACTACTCCCTCTGTCCCAAAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_56030.2 cdna:novel chromosome:030312v2:5:532041610:532045691:1 gene:MLOC_56030 transcript:MLOC_56030.2226560.05112.753
5'     TACTACTCCCTCTGTCCCAAA        3'
o|||||||||o|||| || ||
3' TCAAGTGATGAGGGGGACAAGGATTTATGAAC 5'
1035Hordeum vulgareTTTTGGGACGGAGGGAGTATalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_78266.1 cdna:novel chromosome:030312v2:3HL:8993115:8994352:-1 gene:MLOC_78266 transcript:MLOC_78266.1212070.03552.5
5'     TTTTGGGACGGAGGGAGTAT         3'
||| ||o||||||| |||||
3' ACATAAATCCTTGCCTCCATCATATAAAAACG 5'
1036Hordeum vulgareTTTTGGAACGGAGGGAGTACTalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_78266.1 cdna:novel chromosome:030312v2:3HL:8993115:8994352:-1 gene:MLOC_78266 transcript:MLOC_78266.1212070.03553
5'     TTTTGGAACGGAGGGAGTACT        3'
||| |||||||||| |||| |
3' ACATAAATCCTTGCCTCCATCAT-ATAAAAAC 5'
1037Hordeum vulgareTTTGGATTGAAGGGAGCTCTGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_4149.1 cdna:novel chromosome:030312v2:7:96045484:96047844:-1 gene:MLOC_4149 transcript:MLOC_4149.10734091.83.5
5'     TTTGGATTGAAGGGAGCTCTG        3'
|||| |o|o||||||o|| ||
3' TAAGAAACGTGATTTCCCTTGA-ACGAAGCAT 5'
1038Hordeum vulgareTTTTGGGACGGAGTGAGTATTalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_26643.6 cdna:novel chromosome:030312v2:4:90497913:90501180:1 gene:MLOC_26643 transcript:MLOC_26643.6211140.01131.857142.5
5'     TTTTGGGACGGAGTGAGTATT        3'
|||| |||||||| |||||o|
3' TCATAAAAGCCTGCCTCTCTCATGAGAGAATA 5'
1039Hordeum vulgareTTTTGGGACGGAGGGAGTAACalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_26643.6 cdna:novel chromosome:030312v2:4:90497913:90501180:1 gene:MLOC_26643 transcript:MLOC_26643.6211140131.857142.5
5'     TTTTGGGACGGAGGGAGTAAC        3'
|||| ||||||||o||||| |
3' TCATAAAAGCCTGCCTCTCTCAT-GAGAGAAT 5'
1040Hordeum vulgareTTTTGGAACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_26643.6 cdna:novel chromosome:030312v2:4:90497913:90501180:1 gene:MLOC_26643 transcript:MLOC_26643.6211140131.857142
5'     TTTTGGAACGGAGGGAGTA          3'
|||o|| ||||||o|||||
3' CATAAAAGCC-TGCCTCTCTCATGAGAGAATA 5'
1041Hordeum vulgareTCCACAGGCTTTCTTGAACTGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_64055.3 cdna:novel chromosome:030312v2:7HS:3568107:3569803:-1 gene:MLOC_64055 transcript:MLOC_64055.30831025964.751
5'     TCCACAGGCTTTCTTGAACTG        3'
||||||||||||||||||| |
3' ACCAAGGTGTCCGAAAGAACTTGCCAAGAACG 5'
1042Hordeum vulgareTATTTCTTTACAGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_81382.2 cdna:novel chromosome:030312v2:6:112757030:112764870:-1 gene:MLOC_81382 transcript:MLOC_81382.20679036363.5
5'     TATTTCTTTACA-GAGGGAGTA       3'
||o|||o|o||| ||||o||o|
3' ACAGATGAAGGAGTGTTCTCCTTCGTTCATTT 5'
1043Hordeum vulgareACTCCCTCCGTCCTAAAATGTalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_52900.2 cdna:novel chromosome:030312v2:3HS:1323545:1325511:1 gene:MLOC_52900 transcript:MLOC_52900.2214260.021263
5'     ACTCCCTCCGTCCTAAAATGT        3'
||| ||||||| |o|||||o|
3' TGACTGATGGAGGCATGGTTTTATATTCAGCA 5'
1044Hordeum vulgareAAGCCAAGGATGAGTTGCCTGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_67781.5 cdna:known chromosome:030312v2:2HS:6286392:6289320:-1 gene:MLOC_67781 transcript:MLOC_67781.529930.01234.62.5
5'     AAGCCAAGGATGAGTTGCCTG        3'
|||||||||||||o|||||
3' AGTATTCGGTTCCTACTTAACGGTGGCCGCGG 5'
1045Hordeum vulgareAAGCCAAGGATGAGTTGCCTGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_62730.2 cdna:known chromosome:030312v2:4:501096251:501099501:1 gene:MLOC_62730 transcript:MLOC_62730.2010140225752
5'     AAGCCAAGGATGAGTTGCCTG        3'
||||||||||||| ||||| |
3' TGTATTCGGTTCCTACTAAACGGTCCCCCGTT 5'
1046Hordeum vulgareTTTGGGACGGAGGGAGTACTGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_52823.1 cdna:novel chromosome:030312v2:3:333972822:333974303:-1 gene:MLOC_52823 transcript:MLOC_52823.128700.05993
5'     TTTGGGACGGAGGGAGTACTG        3'
||||||||o| |o|||| |||
3' AGTTAAACCCTGTCCCTCTCA-GACTACCACT 5'
1047Hordeum vulgareCTGACAGAAGAGAGTGAGCACalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_11199.1 cdna:known chromosome:030312v2:6HS:3424576:3430071:-1 gene:MLOC_11199 transcript:MLOC_11199.1226820.04294.142863
5'     CTGACAGAAGAGAGTGAGCAC        3'
||||||||||||| |||||
3' AACGAACTGTCTTCTCTCTCTCGTACGACTTC 5'
1048Hordeum vulgareTTACTCCCTCCGTCCTAAAATalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_58351.3 cdna:novel chromosome:030312v2:5:550929856:550930292:1 gene:MLOC_58351 transcript:MLOC_58351.32240052.51.5
5'     TTACTCCCTCCGTCCTAAAAT        3'
o||||||||||o|||o|||||
3' GGTTGATGAGGGAGGTAGGGTTTTATATTCTC 5'
1049Hordeum vulgareGTATTCCCTCCGTCCCAAATAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_58351.3 cdna:novel chromosome:030312v2:5:550929856:550930292:1 gene:MLOC_58351 transcript:MLOC_58351.322400.0152.53
5'     GTATTCCCTCCGTCCCAAATA        3'
||o|||||||o||||||| |
3' GGTTGATGAGGGAGGTAGGGTTT-TATATTCT 5'
1050Hordeum vulgareTGTACTCCCTCCGTTCCTAAAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_17833.1 cdna:novel chromosome:030312v2:5:530617343:530619382:1 gene:MLOC_17833 transcript:MLOC_17833.1212270.0273.53
5'     TGTACTCCCTCCGTTCCTAAA        3'
|||||| | |||||||| |||
3' TTGTACATGATGAAGGCAAGGTTTTATATACT 5'
1051Hordeum vulgareTTTGGGACGGAGGGAGTACTGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_71605.1 cdna:novel chromosome:030312v2:6:536383101:536385272:-1 gene:MLOC_71605 transcript:MLOC_71605.1019260.0391.1254
5'    TTTGGG-ACGGAGGGAGTACTG        3'
|||o|| ||o||||||||||
3' CATAAATCCATGTCTCCCTCATGTATCATACT 5'
1052Hordeum vulgareTAGTTCTTTACAGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_24214.1 cdna:novel chromosome:030312v2:6HS:10897770:10898254:-1 gene:MLOC_24214 transcript:MLOC_24214.122040.0131313
5'     TAGTTCTTTACAGAGGGAGTA        3'
o|o||| |||||||||| |||
3' TCGTGTTAAG-AATGTCTCCCACATTGTAGCA 5'
1053Hordeum vulgareTCGCTTGGTGCAGATCGGGACalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_12447.3 cdna:novel chromosome:030312v2:7:8067698:8073409:1 gene:MLOC_12447 transcript:MLOC_12447.322490.0350103
5'     TCGCTTGGTGCAGATCGGGAC        3'
| ||||||||||| ||||||
3' GACCA-CGAACCACGTCGAGCCCTTGACAAGA 5'
1054Hordeum vulgareTTTGGATTGAAGGGAGCTCTGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_4149.4 cdna:novel chromosome:030312v2:7:96045515:96048098:-1 gene:MLOC_4149 transcript:MLOC_4149.408790.0291.83.5
5'     TTTGGATTGAAGGGAGCTCTG        3'
|||| |o|o||||||o|| ||
3' TAAGAAACGTGATTTCCCTTGA-ACGAAGCAT 5'
1055Hordeum vulgareAAGCCAAGGATGAGTTGCCTGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_76757.4 cdna:known chromosome:030312v2:5:17021024:17025606:1 gene:MLOC_76757 transcript:MLOC_76757.4216530.04315.166673
5'     AAGCCAAGGATGAGTTGCCTG        3'
|||||||o||||o|||||oo
3' GGTACTCGGTTCTTACTTAACGGGTGCCTGTC 5'
1056Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_9817.2 cdna:known chromosome:030312v2:3:28801378:28804417:1 gene:MLOC_9817 transcript:MLOC_9817.224670.05102.53.5
5'     TATTATGGGACGGAGGGAGTA        3'
||| ||||| |||||o||||
3' GTTCTTAAAACCCTACCTCCTTCATACACAGA 5'
1057Hordeum vulgareCTTCCGTCCCAAAATAAGTGAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_52653.1 cdna:known chromosome:030312v2:7HS:3583589:3589465:-1 gene:MLOC_52653 transcript:MLOC_52653.1211920771.5
5'     CTTCCGTCCCAAAATAAGTGA        3'
|o||||| |||||||||||||
3' TGAGGGAGGCAAGGTTTTATTCACTGAGTTCG 5'
1058Hordeum vulgareAAGCCAAGGATGAGTTGCCTGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_36554.1 cdna:known chromosome:030312v2:6:504853210:504857063:-1 gene:MLOC_36554 transcript:MLOC_36554.1095701171170
5'     AAGCCAAGGATGAGTTGCCTG        3'
|||||||||||||||||||||
3' TTATTTCGGTTCCTACTCAACGGACTAGTAGT 5'
1059Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_51067.6 cdna:novel chromosome:030312v2:7HL:926384:935090:1 gene:MLOC_51067 transcript:MLOC_51067.6229150102.52
5'     TATTATGGGACGGAGGGAGTA        3'
||| ||||||||||||||||
3' GTTCTTAAAACCCTGCCTCCCTCATGATTTTA 5'
1060Hordeum vulgareTATTTCTTTACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_5129.1 cdna:known chromosome:030312v2:2:364176576:364178273:-1 gene:MLOC_5129 transcript:MLOC_5129.104080133513354
5'     TATTTCTTTACGGAGGGAGTA        3'
||o|||o|o| || ||o||||
3' TCGTATGAAGGAGTACC-CCTTCATGAAGAGT 5'
1061Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_57414.3 cdna:known chromosome:030312v2:4:530999410:531002030:-1 gene:MLOC_57414 transcript:MLOC_57414.3212650.0251.666673
5'     TATTATGGGACGGAGGGAGTA        3'
|||| |||o||o| |||||||
3' GTAAATAAAACCTTGTCCCCCTCATCATCTCC 5'
1062Hordeum vulgareTCCTAAATACTTGTTGTTGGGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_53290.1 cdna:novel chromosome:030312v2:6HS:4882335:4885498:1 gene:MLOC_53290 transcript:MLOC_53290.1210850223.142860
5'     TCCTAAATACTTGTTGTTGGG        3'
|||||||||||||||||||||
3' GACAAGGATTTATGAACAACAACCCTTCTTGA 5'
1063Hordeum vulgareACATTATGGGACGGAGGGAGTalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_4643.4 cdna:known chromosome:030312v2:2:411917930:411924478:-1 gene:MLOC_4643 transcript:MLOC_4643.4232310823
5'     ACATTATGGGACGGAGGGAGT        3'
|| |o|||||| |||o|||||
3' CGTGTG-AGTACCCTACCTTCCTCATAAACTA 5'
1064Hordeum vulgareACTCCCTCCATCCCATAATATalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_44548.1 cdna:novel chromosome:030312v2:1:108823500:108826797:-1 gene:MLOC_44548 transcript:MLOC_44548.122046073.51
5'     ACTCCCTCCATCCCATAATAT        3'
||||||||||||| |||||||
3' TTGATGAGGGAGGTAGG-TATTATATTCTCGC 5'
1065Hordeum vulgareATATTATGGGACGGAGGGAGGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_56507.1 cdna:novel chromosome:030312v2:2:24894587:24898152:1 gene:MLOC_56507 transcript:MLOC_56507.1011440.011023
5'     ATATTATGGGACGGAGGGAGG        3'
|o||||||||| |o||||||
3' AGAATGTAATACCCTCCTTCCCTCATTCTTAA 5'
1066Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_65523.4 cdna:novel chromosome:030312v2:7HL:6851059:6852521:1 gene:MLOC_65523 transcript:MLOC_65523.421286052.52
5'     TATTATGGGACGGAGGGAGTA        3'
|||| |o|||||||o||||||
3' GTAAATAAAATCCTGCCTTCCTCATAAGTGTT 5'
1067Hordeum vulgareTATTTGCAGGTTTTAGGTCTAAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_70446.3 cdna:novel chromosome:030312v2:7:2801779:2804764:1 gene:MLOC_70446 transcript:MLOC_70446.3213630141.752.5
5'     TATTTGCAGGTTTTAGGTCTAA       3'
o||||||||||||||o|||o|
3' TTTTGTAAACGTCCAAAATTCAGGTCTACCTT 5'
1068Hordeum vulgareTTATTTTGGGACGGAGGGAGTalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_58552.5 cdna:novel chromosome:030312v2:2:475555959:475559690:-1 gene:MLOC_58552 transcript:MLOC_58552.504670.021024
5'     TTATTTTGGGACGGAGGGAGT        3'
o||| ||||||o| ||||||
3' AGAATGTAATACCCTGTCGCCCTCATTAAAGA 5'
1069Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_56507.1 cdna:novel chromosome:030312v2:2:24894587:24898152:1 gene:MLOC_56507 transcript:MLOC_56507.121143081.62
5'     TATTATGGGACGGAGGGAGTA        3'
o||||||||| |o||||||||
3' GAATGTAATACCCTCCTTCCCTCATTCTTAAT 5'
1070Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_58552.5 cdna:novel chromosome:030312v2:2:475555959:475559690:-1 gene:MLOC_58552 transcript:MLOC_58552.52466081.62
5'     TATTATGGGACGGAGGGAGTA        3'
o||||||||||o| |||||||
3' GAATGTAATACCCTGTCGCCCTCATTAAAGAT 5'
1071Hordeum vulgareCTTATATTATGGGACGGAGGGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_58552.5 cdna:novel chromosome:030312v2:2:475555959:475559690:-1 gene:MLOC_58552 transcript:MLOC_58552.524700121.52
5'     CTTATATTATGGGACGGAGGG        3'
||||o||||||||||o| |||
3' TGCAGAATGTAATACCCTGTCGCCCTCATTAA 5'
1072Hordeum vulgareTTTGGGACGGAGGGAGTACTGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_4425.8 cdna:novel chromosome:030312v2:6:244732157:244735974:1 gene:MLOC_4425 transcript:MLOC_4425.8211390.0391.285713
5'     TTTGGGACGGAGGGAGTACTG        3'
|| || |||||||||||| ||
3' AATAAATCCATGCCTCCCTCAT-ACTCTATTA 5'
1073Hordeum vulgareACTCCCTCTGTCCCAAAATAGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_32803.1 cdna:novel chromosome:030312v2:5:559812611:559815128:-1 gene:MLOC_32803 transcript:MLOC_32803.1215880841
5'     ACTCCCTCTGTCCCAAAATAG        3'
||||||||||| |||||||||
3' ATGATGAGGGAGACAAGGTTTTATCCACAGAG 5'
1074Hordeum vulgareGCCACCGCAGCCGCTGCCGCAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_43626.1 cdna:known chromosome:030312v2:3HS:18114321:18115355:1 gene:MLOC_43626 transcript:MLOC_43626.105800.0316164
5'     GCCACCGCAGCCGCTGCCGCA        3'
|| || |||||||| |||||
3' CAGTCGCTGTCGTCGGCG-CGGCGGAGGAGGA 5'
1075Hordeum vulgareTCGGACCAGGCTTCATTCCalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_61603.3 cdna:known chromosome:030312v2:1:192064052:192072095:-1 gene:MLOC_61603 transcript:MLOC_61603.301046016432.81
5'     TCGGACCAGGCTTCATTCC          3'
o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTCCGTAGCC 5'
1076Hordeum vulgareTCGGACCAGGCTTCATTCCCalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_61603.3 cdna:known chromosome:030312v2:1:192064052:192072095:-1 gene:MLOC_61603 transcript:MLOC_61603.301046016432.81.5
5'     TCGGACCAGGCTTCATTCCC         3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAGC 5'
1077Hordeum vulgareTCGGACCAGGCTTCATTCCalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_33978.4 cdna:novel chromosome:030312v2:5:492709362:492713465:-1 gene:MLOC_33978 transcript:MLOC_33978.40622015216.88891
5'     TCGGACCAGGCTTCATTCC          3'
o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTTGGTAAAC 5'
1078Hordeum vulgareTCGGACCAGGCTTCATTCCCalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_33978.4 cdna:novel chromosome:030312v2:5:492709362:492713465:-1 gene:MLOC_33978 transcript:MLOC_33978.40622015216.88891.5
5'     TCGGACCAGGCTTCATTCCC         3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTTGGTAAA 5'
1079Hordeum vulgareCTTCCGTCCCAAAATAAGTGAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_75925.3 cdna:known chromosome:030312v2:3HL:6935342:6940187:1 gene:MLOC_75925 transcript:MLOC_75925.3217900.02153.753
5'     CTTCCGTCCCAAAATAAGTGA        3'
||||||||||||||||||
3' TGAAACAGGCAGGGTTTTATTCACAGAGTTGA 5'
1080Hordeum vulgareCTTATATTATGGGACGGAGGGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_69110.1 cdna:known chromosome:030312v2:3:373793193:373797625:1 gene:MLOC_69110 transcript:MLOC_69110.1017210178.52
5'     CTTATATTATGGGACGGAGGG        3'
|o||||||||||o| ||||||
3' TGTTGGATATAATACCTTACCTCCCTCATGTA 5'
1081Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_59910.2 cdna:known chromosome:030312v2:2:74913503:74919764:-1 gene:MLOC_59910 transcript:MLOC_59910.222160192.111111
5'     TATTATGGGACGGAGGGAGTA        3'
|||| ||||||||||||||||
3' GTCAATAAAACCCTGCCTCCCTCATATACTAT 5'
1082Hordeum vulgareTGTACTCCCTCCGTTCCTAAAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_5347.1 cdna:novel chromosome:030312v2:2HS:10116351:10121217:-1 gene:MLOC_5347 transcript:MLOC_5347.1217890.0211113
5'     TGTACTCCCTCCGTTCCTAAA        3'
||||||||||||| ||| | |
3' AAGTACATGAGGGAGGCTAGG-TATAATTAAC 5'
1083Hordeum vulgareTTTTGGGACAGAGGAAGTACTalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_5651.2 cdna:known chromosome:030312v2:4:87404865:87410843:-1 gene:MLOC_5651 transcript:MLOC_5651.2221070.05157.53
5'     TTTTGGGACAGAGGAAGTACT        3'
||| || |||||||||||||
3' CAATAAATCCATGTCTCCTTCATGTGGATATC 5'
1084Hordeum vulgareTTATGGGACAGAGGGAGTACAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_5651.2 cdna:known chromosome:030312v2:4:87404865:87410843:-1 gene:MLOC_5651 transcript:MLOC_5651.2221070.01157.52.5
5'     TTATGGGACAGAGGGAGTACA        3'
||| || |||||||o||||||
3' AATAAAT-CCATGTCTCCTTCATGTGGATATC 5'
1085Hordeum vulgareTGTACTCCCTCCGTTCCTAAAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_9522.1 cdna:novel chromosome:030312v2:1:124351345:124353037:1 gene:MLOC_9522 transcript:MLOC_9522.127110.0215153.5
5'     TGTACTCCCTCCGTTCC-TAAA       3'
||||||||||||o|| ||||
3' TCTATGATGAGGGAGGCAGGGTATTTTCAGGG 5'
1086Hordeum vulgareTTTTGGGACGGAGTGAGTATTalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_53015.2 cdna:known chromosome:030312v2:7HS:6327789:6334296:1 gene:MLOC_53015 transcript:MLOC_53015.2216750422.5
5'     TTTTGGGACGGAGTGAGTATT        3'
||||||||||||| |||||o
3' GAATAAAACCCTGCCTCCCTCATGTTTTATGT 5'
1087Hordeum vulgareTTTTGGGACGGAGGGAGTAACalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_53015.2 cdna:known chromosome:030312v2:7HS:6327789:6334296:1 gene:MLOC_53015 transcript:MLOC_53015.2216750421
5'     TTTTGGGACGGAGGGAGTAAC        3'
||||||||||||||||||| |
3' GAATAAAACCCTGCCTCCCTCAT-GTTTTATG 5'
1088Hordeum vulgareTGACAGAAGAGAGTGAGCACAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_37841.2 cdna:known chromosome:030312v2:7:214318191:214323478:1 gene:MLOC_37841 transcript:MLOC_37841.2063804522.51
5'     TGACAGAAGAGAGTGAGCACA        3'
||||||||||||| |||||||
3' CTCGACTGTCTTCTCTCTCTCGTGTCAGGCTC 5'
1089Hordeum vulgareGCATAGCATCATGAGCAATCAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_70472.3 cdna:novel chromosome:030312v2:1:454920596:454923672:1 gene:MLOC_70472 transcript:MLOC_70472.307710.031554
5'     GCATAGCATCATGAGCAATCA        3'
| |||o|||||| |o|| |||
3' TAACCATATTGTAGTAGTTGT-AGTCACTTAA 5'
1090Hordeum vulgareCTTCCGTCCCAAAATAAGTGAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_69556.1 cdna:novel chromosome:030312v2:5HS:841593:846345:-1 gene:MLOC_69556 transcript:MLOC_69556.1240510841.5
5'     CTTCCGTCCCAAAATAAGTGA        3'
|o||||||||||||||||||
3' TGAGGGAGGCAGGGTTTTATTCACAGCGACGA 5'
1091Hordeum vulgareTTTGGATTGAAGGGAGCTCTGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_74051.5 cdna:novel chromosome:030312v2:7:510581541:510584593:-1 gene:MLOC_74051 transcript:MLOC_74051.5016940225.53
5'     TTTGGATTGAAGGGAGCTCTG        3'
||||| ||||||||o|||o|
3' CGTATAACCTTACTTCCCTTGAGGCAAAATTA 5'
1092Hordeum vulgareTGTACTCCCTCCGTTCCTAAAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_61642.2 cdna:known chromosome:030312v2:7:555938286:555947384:1 gene:MLOC_61642 transcript:MLOC_61642.2214460992
5'     TGTACTCCCTCCGTTCCTAAA        3'
|o||||||||||||o|| |||
3' TACAATATGAGGGAGGCAGGGTTTTATTCACA 5'
1093Hordeum vulgareAGTACTTCCTCCGTCCCAAAAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_61642.2 cdna:known chromosome:030312v2:7:555938286:555947384:1 gene:MLOC_61642 transcript:MLOC_61642.2214460991.5
5'     AGTACTTCCTCCGTCCCAAAA        3'
| ||||o||||||||||||||
3' ACAAT-ATGAGGGAGGCAGGGTTTTATTCACA 5'
1094Hordeum vulgareTGACAGAAGAGAGTGAGCACAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_61297.1 cdna:known chromosome:030312v2:7:224856072:224859310:-1 gene:MLOC_61297 transcript:MLOC_61297.107870144.666671
5'     TGACAGAAGAGAGTGAGCACA        3'
||||||||||||| |||||||
3' CTCAACTGTCTTCTCTCTCTCGTGTCGACCTC 5'
1095Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_52861.1 cdna:novel chromosome:030312v2:3HS:9317676:9318444:-1 gene:MLOC_52861 transcript:MLOC_52861.126630.05773.5
5'     TATTATGGGACGGAGGGAGTA        3'
|||||o||o| |||o| ||||
3' AATAATAATGCCTTACCTTC-TCATCCAATTA 5'
1096Hordeum vulgareCTGACAGAAGAGAGTGAGCACalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_61297.1 cdna:known chromosome:030312v2:7:224856072:224859310:-1 gene:MLOC_61297 transcript:MLOC_61297.127880.0141.333332
5'     CTGACAGAAGAGAGTGAGCAC        3'
||||||||||||| ||||||
3' ACTCAACTGTCTTCTCTCTCTCGTGTCGACCT 5'
1097Hordeum vulgareTGATTGAGCCGTGCCAATATalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_16514.1 cdna:novel chromosome:030312v2:7:2773139:2774808:1 gene:MLOC_16514 transcript:MLOC_16514.1238030300.5
5'     TGATTGAGCCGTGCCAATAT         3'
|||||||||||o||||||||
3' GGCCACTAACTCGGCGCGGTTATAGAGCGCGC 5'
1098Hordeum vulgareTCCTAAATACTTGTTGTTGGGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_68408.1 cdna:novel chromosome:030312v2:1:140583768:140600726:-1 gene:MLOC_68408 transcript:MLOC_68408.1289000223.142860
5'     TCCTAAATACTTGTTGTTGGG        3'
|||||||||||||||||||||
3' GACAAGGATTTATGAACAACAACCCCTCTTGA 5'
1099Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_69582.1 cdna:novel chromosome:030312v2:2HS:406041:407531:1 gene:MLOC_69582 transcript:MLOC_69582.1213790771
5'     TATTATGGGACGGAGGGAGTA        3'
|||| ||||||||||||||||
3' GTTAATAAAACCCTGCCTCCCTCATATTGTAT 5'
1100Hordeum vulgareTTTGGGACGGAGGGAGTACTGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_69582.1 cdna:novel chromosome:030312v2:2HS:406041:407531:1 gene:MLOC_69582 transcript:MLOC_69582.1213760.01221.5
5'     TTTGGGACGGAGGGAGTACTG        3'
|||||||||||||||||| |o
3' AATAAAACCCTGCCTCCCTCAT-ATTGTATCC 5'
1101Hordeum vulgareTATGGGACGGAGGGAGTATCTalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_69582.1 cdna:novel chromosome:030312v2:2HS:406041:407531:1 gene:MLOC_69582 transcript:MLOC_69582.1213760.02223
5'     TATGGGACGGAGGGAGTATCT        3'
| |||||||||||||||||
3' AATAAAACCCTGCCTCCCTCATATTGTATCCC 5'
1102Hordeum vulgareTTATTTTGGGACGGAGGGAGTalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_69582.1 cdna:novel chromosome:030312v2:2HS:406041:407531:1 gene:MLOC_69582 transcript:MLOC_69582.1213800220
5'     TTATTTTGGGACGGAGGGAGT        3'
|||||||||||||||||||||
3' AGTTAATAAAACCCTGCCTCCCTCATATTGTA 5'
1103Hordeum vulgareCTCCGTTCCTAAATATAAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_51860.3 cdna:novel chromosome:030312v2:3:12123027:12128342:-1 gene:MLOC_51860 transcript:MLOC_51860.3232350622.5
5'     CTCCGTTCCTAAATATAAGTA        3'
|||||||||| ||||o| |||
3' GAGGGAGGCAAGGAATTATGT-CATATTCTGG 5'
1104Hordeum vulgareTGACAGAAGAGAGTGAGCACAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_52321.2 cdna:known chromosome:030312v2:3:518753339:518756802:-1 gene:MLOC_52321 transcript:MLOC_52321.2069008721.751
5'     TGACAGAAGAGAGTGAGCACA        3'
||||||||||||| |||||||
3' ACAGACTGTCTTCTCTCTCTCGTGTCAACACC 5'
1105Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_6897.4 cdna:known chromosome:030312v2:7:547221774:547225949:1 gene:MLOC_6897 transcript:MLOC_6897.4012430271135.52
5'     TATTATGGGACGGAGGGAGTA        3'
|||||||| |||||||| |||
3' GTATATAATACCGTGCCTCCCCCATCAATGTT 5'
1106Hordeum vulgareATTATGGAACGGAGGGAGTalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_6897.4 cdna:known chromosome:030312v2:7:547221774:547225949:1 gene:MLOC_6897 transcript:MLOC_6897.4212420.011472
5'     ATTATGGAACGGAGGGAGT          3'
||||||| |||||||| ||
3' TATATAATACCGTGCCTCCCCCATCAATGTTT 5'
1107Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_1236.6 cdna:novel chromosome:030312v2:7:588501118:588502025:1 gene:MLOC_1236 transcript:MLOC_1236.623960.0482.666673
5'    TATTA-TGGGACGGAGGGAGTA        3'
o|||| |||o| ||||||||||
3' GATGTAATAACCTTACCTCCCTCATGGTTTTA 5'
1108Hordeum vulgareATTATGGAACGGAGGGAGTalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_61904.2 cdna:novel chromosome:030312v2:2HL:3:12085:1 gene:MLOC_61904 transcript:MLOC_61904.2249050115.51
5'     ATTATGGAACGGAGGGAGT          3'
||| |||||||||||||||
3' TTGATAAAACCTTGCCTCCCTCATGTTCGTCT 5'
1109Hordeum vulgareTTTTGGGACGGAGTGAGTATTalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_69582.1 cdna:novel chromosome:030312v2:2HS:406041:407531:1 gene:MLOC_69582 transcript:MLOC_69582.1213770.01332
5'     TTTTGGGACGGAGTGAGTATT        3'
||||||||||||| ||||||
3' TAATAAAACCCTGCCTCCCTCATATTGTATCC 5'
1110Hordeum vulgareTTTTGGAACGGAGGGAGTACTalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_69582.1 cdna:novel chromosome:030312v2:2HS:406041:407531:1 gene:MLOC_69582 transcript:MLOC_69582.1213770332
5'     TTTTGGAACGGAGGGAGTACT        3'
|||||| |||||||||||| |
3' TAATAAAACCCTGCCTCCCTCAT-ATTGTATC 5'
1111Hordeum vulgareTTTTGGAACGGAGGGAGTATCalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_26643.4 cdna:novel chromosome:030312v2:4:90497913:90501180:1 gene:MLOC_26643 transcript:MLOC_26643.429810.05131.857143.5
5'     TTTTGGAACGGAGGGAGTATC        3'
|||o|| ||||||o|||||o
3' CATAAAAGCC-TGCCTCTCTCATGAGAGAATA 5'
1112Hordeum vulgareTTATTTTGGGACGGAGGGAGTalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_11772.4 cdna:novel chromosome:030312v2:3:409997449:410002809:1 gene:MLOC_11772 transcript:MLOC_11772.42316501052
5'     TTATTTTGGGACGGAGGGAGT        3'
|||o||||o|| |||||||||
3' AGTGAATGAAACTCTACCTCCCTCATCTTGTG 5'
1113Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_72849.6 cdna:known chromosome:030312v2:5:32062940:32069184:-1 gene:MLOC_72849 transcript:MLOC_72849.628700.0181.62
5'     TATTATGGGACGGAGGGAGTA        3'
|||| |||||||||||||| |
3' GTGAATAAAACCCTGCCTCCCTCCTATACTGT 5'
1114Hordeum vulgareGATTTGTCCACGTCATCACAAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_61904.4 cdna:novel chromosome:030312v2:2HL:4:12036:1 gene:MLOC_61904 transcript:MLOC_61904.4218730.0450.8333333
5'     GATTTGTCCACGTCATCACAA        3'
|||o|||||| || |o|||||
3' CATACTAGACAGGTACA-TGGTGTTACATAGA 5'
1115Hordeum vulgareAAGCCAAGGATGAGTTGCCTGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_24655.1 cdna:novel chromosome:030312v2:5HL:34097857:34099120:1 gene:MLOC_24655 transcript:MLOC_24655.127400.0146462.5
5'     AAGCCAAGGATGAGTTGCCTG        3'
|||||||o|||| |||||||
3' TCATCTCGGTTCTTACTAAACGGACGTCCGTT 5'
1116Hordeum vulgareTCCACAGGCTTTCTTGAACTGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_80060.2 cdna:novel chromosome:030312v2:5HL:22774025:22775272:-1 gene:MLOC_80060 transcript:MLOC_80060.2085304723.51
5'     TCCACAGGCTTTCTTGAACTG        3'
||||||||||||||||||| |
3' AGGAAGGTGTCCGAAAGAACTTGCCGGCGCCG 5'
1117Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_34478.1 cdna:novel chromosome:030312v2:5:333694744:333703755:1 gene:MLOC_34478 transcript:MLOC_34478.128550192.111111
5'     TATTATGGGACGGAGGGAGTA        3'
|||| ||||||||||||||||
3' GTCAATAAAACCCTGCCTCCCTCATCAAACAT 5'
1118Hordeum vulgareTCGGACCAGGCTTCATTCCalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_58644.2 cdna:novel chromosome:030312v2:5:32050369:32056315:-1 gene:MLOC_58644 transcript:MLOC_58644.20809015216.88890.5
5'     TCGGACCAGGCTTCATTCC          3'
o||||||||||||||||||
3' CTTAGGCCTGGTCCGAAGTAAGGGTAGTAAAC 5'
1119Hordeum vulgareGTACTTCCTTCGTCCCAAAATalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_17792.1 cdna:known chromosome:030312v2:5:394483785:394486837:-1 gene:MLOC_17792 transcript:MLOC_17792.126580.03773.5
5'    GTACTTCCT-TCGTCCCAAAAT        3'
o|||||||| || || ||||||
3' CGTTATGAAGGACAGGAGCGTTTTAGTAAGCG 5'
1120Hordeum vulgareTTTTGGGACGGAGGGAGTATalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_61904.2 cdna:novel chromosome:030312v2:2HL:3:12085:1 gene:MLOC_61904 transcript:MLOC_61904.224904052.51
5'     TTTTGGGACGGAGGGAGTAT         3'
||||||o||||||||||||o
3' TGATAAAACCTTGCCTCCCTCATGTTCGTCTG 5'
1121Hordeum vulgareTTTTGGGACGGAGGGAGTAACalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_61904.2 cdna:novel chromosome:030312v2:2HL:3:12085:1 gene:MLOC_61904 transcript:MLOC_61904.224904052.51.5
5'     TTTTGGGACGGAGGGAGTAAC        3'
||||||o|||||||||||| |
3' TGATAAAACCTTGCCTCCCTCAT-GTTCGTCT 5'
1122Hordeum vulgareCTCCGTTCCTAAATATAAGTCalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_51860.1 cdna:novel chromosome:030312v2:3:12122978:12128352:-1 gene:MLOC_51860 transcript:MLOC_51860.1233130.04623.5
5'     CTCCGTTCCTAAATATAAGTC        3'
|||||||||| ||||o| ||
3' GAGGGAGGCAAGGAATTATGT-CATATTCTGG 5'
1123Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_79070.1 cdna:novel chromosome:030312v2:4:299437015:299441733:-1 gene:MLOC_79070 transcript:MLOC_79070.1219100442
5'     TATTATGGGACGGAGGGAGTA        3'
|||| ||||| ||||||||||
3' GTAAATAAAACCCTACCTCCCTCATCATCGAA 5'
1124Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_69518.1 cdna:novel chromosome:030312v2:7:523831801:523835346:1 gene:MLOC_69518 transcript:MLOC_69518.121103081.61
5'     TATTATGGGACGGAGGGAGTA        3'
|||| ||||||||||||||||
3' GTGAATAAAACCCTGCCTCCCTCATAAAGAAA 5'
1125Hordeum vulgareTGCAGTTGCTGCCTCAAGCTTalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_73623.1 cdna:known chromosome:030312v2:7:575064402:575067960:-1 gene:MLOC_73623 transcript:MLOC_73623.1211190.05157.52.5
5'     TGCAGTTGCTGCCTCAAGCTT        3'
||||| |||||||||| ||o|
3' TAGAACGTCTACGACGGAGT-CGGAGTGTTAG 5'
1126Hordeum vulgareTGATTGAGCCGTGCCAATATalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_43989.1 cdna:novel chromosome:030312v2:6HL:11132556:11134798:1 gene:MLOC_43989 transcript:MLOC_43989.1290302041020.5
5'     TGATTGAGCCGTGCCAATAT         3'
|||||||||||o||||||||
3' GACCACTAACTCGGCGCGGTTATAGAGTGCGC 5'
1127Hordeum vulgareTGCAGTTGTTGCCTCATGCTTalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_73623.2 cdna:novel chromosome:030312v2:7:575064570:575067750:-1 gene:MLOC_73623 transcript:MLOC_73623.209090157.53
5'     TGCAGTTGTTGCCTCATGCTT        3'
||||| ||o||||||| ||o|
3' TAGAACGTCTACGACGGAGT-CGGAGTGTTAG 5'
1128Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_59824.3 cdna:novel chromosome:030312v2:5:295978958:295982464:-1 gene:MLOC_59824 transcript:MLOC_59824.328170221
5'     TATTATGGGACGGAGGGAGTA        3'
|||| ||||||||||||||||
3' GTGAATAAAACCCTGCCTCCCTCATTCATTTT 5'
1129Hordeum vulgareTTTTGGGACGGAGTGAGTATTalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_61904.6 cdna:novel chromosome:030312v2:2HL:6048:12085:1 gene:MLOC_61904 transcript:MLOC_61904.6248070.0252.53
5'     TTTTGGGACGGAGTGAGTATT        3'
||||||o|||||| |||||o
3' TGATAAAACCTTGCCTCCCTCATGTTCGTCTG 5'
1130Hordeum vulgareAGTCTACTCCCTCCGTTCCTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_6070.4 cdna:known chromosome:030312v2:6HS:2185538:2188313:1 gene:MLOC_6070 transcript:MLOC_6070.4216800.01662.5
5'    AGT-CTACTCCCTCCGTTCCTA        3'
|o| |||||||||||||||| |
3' GTTTTATGATGAGGGAGGCAAGGTTTTNNNNA 5'
1131Hordeum vulgareGTATTTACTCCCTCCGTTCTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_55064.1 cdna:known chromosome:030312v2:4:539278540:539280461:1 gene:MLOC_55064 transcript:MLOC_55064.125550.0215153
5'     GTATTTACTCCCTCCGTTCTA        3'
||o||||||||||||||o|
3' CAAGATTAGATGAGGGAGGCAAGGTTTTATTC 5'
1132Hordeum vulgareTTACTCCCTCCGTCCTAAAATalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_7480.1 cdna:novel chromosome:030312v2:1H:5846411:5849197:1 gene:MLOC_7480 transcript:MLOC_7480.1224100.02843
5'     TTACTCCCTCCGTCCTAAAAT        3'
|| ||||||||o||o|||||
3' TATGTATAAGGGAGGCGGGGTTTTATTCAATG 5'
1133Hordeum vulgareGTATTCCCTCCGTCCCAAATAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_7480.1 cdna:novel chromosome:030312v2:1H:5846411:5849197:1 gene:MLOC_7480 transcript:MLOC_7480.1224100842
5'     GTATTCCCTCCGTCCCAAATA        3'
o|||||||||||o|||||| |
3' TATGTATAAGGGAGGCGGGGTTT-TATTCAAT 5'
1134Hordeum vulgareTCCTAAATACTTGTTGTTGGGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_5661.2 cdna:known chromosome:030312v2:3:461455521:461457482:-1 gene:MLOC_5661 transcript:MLOC_5661.228610223.142860
5'     TCCTAAATACTTGTTGTTGGG        3'
|||||||||||||||||||||
3' GACAAGGATTTATGAACAACAACCCCTCTTGA 5'
1135Hordeum vulgareTTTGGATTGAAGGGAGCTCTGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_71332.1 cdna:novel chromosome:030312v2:3:466323274:466326190:-1 gene:MLOC_71332 transcript:MLOC_71332.128690.0218592.52.5
5'     TTTGGATTGAAGGGAGCTCTG        3'
o||||| ||||||||||||oo
3' CATAGAACCTCACTTCCCTCGAGGTAGAAGTT 5'
1136Hordeum vulgareTATAGTACTCCCTCCGTCCGGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_62271.2 cdna:novel chromosome:030312v2:1H:33825500:33826177:-1 gene:MLOC_62271 transcript:MLOC_62271.225930.02157.53
5'     TATAGTACTCCCTCCGTCCGG        3'
| |||| ||||||||||||oo
3' TATTAGATCAAGAGGGAGGCAGGTTACATGAG 5'
1137Hordeum vulgareTCCACAGGCTTTCTTGAACTGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_75225.1 cdna:novel chromosome:030312v2:3HL:14015810:14018279:-1 gene:MLOC_75225 transcript:MLOC_75225.1076801271273.5
5'     TCCACAGGCTTTCTTGAACTG        3'
||||||o|||| ||||| ||
3' GAGGAGGTGTTCGAA-GAACTCGAGTGGTTAG 5'
1138Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_43693.4 cdna:novel chromosome:030312v2:1:339618210:339621726:-1 gene:MLOC_43693 transcript:MLOC_43693.421772041.333331.5
5'     TATTATGGGACGGAGGGAGTA        3'
|||| ||o|||||||||||||
3' GTGAATAAAACTCTGCCTCCCTCATGGAACGA 5'
1139Hordeum vulgareCGCAGCTGTAGTCGCCGGCGTalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_65066.1 cdna:novel chromosome:030312v2:2:233087046:233088708:-1 gene:MLOC_65066 transcript:MLOC_65066.124140.0482.666673
5'     CGCAGCTGTAGTCGCCGGCGT        3'
|| |||o||||||||||o||
3' CCCAGCTTCGGCATCAGCGGCTGCTCGCACGG 5'
1140Hordeum vulgareAAGCCAAGGATGAGTTGCCTGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_36747.1 cdna:novel chromosome:030312v2:7:35966124:35967043:-1 gene:MLOC_36747 transcript:MLOC_36747.126590.01993
5'     AAGCCAAGGATGAGTTGCCTG        3'
||o| ||||||||oo|||||o
3' ATAATTTGCTTCCTACTTGACGGATGATTGCC 5'
1141Hordeum vulgareTTTGGATTGAAGGGAGCTCTGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_4149.5 cdna:novel chromosome:030312v2:7:96045517:96047783:-1 gene:MLOC_4149 transcript:MLOC_4149.50788091.83.5
5'     TTTGGATTGAAGGGAGCTCTG        3'
|||| |o|o||||||o|| ||
3' TAAGAAACGTGATTTCCCTTGA-ACGAAGCAT 5'
1142Hordeum vulgareAGGGTCATCTGTGACGGGCTCalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_8224.2 cdna:novel chromosome:030312v2:7HL:13076770:13079417:1 gene:MLOC_8224 transcript:MLOC_8224.22753012122.5
5'     AGGGTCATCTGTGACGGGCTC        3'
|||||||||| ||||| o|||
3' GAGGTCCCAGTAGAAACTGCGTGAGAGAGGTA 5'
1143Hordeum vulgareTGCAGTTGTTGCCTCATGCTTalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_16182.1 cdna:novel chromosome:030312v2:7HL:17469123:17471345:-1 gene:MLOC_16182 transcript:MLOC_16182.1214410.0120202.5
5'     TGCAGTTGTTGCCTCATGCTT        3'
|||||o||o||||||| |||o
3' GTATACGTCGACGACGGAGTTCGAGAGTGAGG 5'
1144Hordeum vulgareTTTGGGACGGAGGGAGTACTGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_72495.1 cdna:known chromosome:030312v2:3:542235938:542240994:1 gene:MLOC_72495 transcript:MLOC_72495.121797010101
5'     TTTGGGACGGAGGGAGTACTG        3'
|||o||||||||||||||||o
3' AATAAAATCCTGCCTCCCTCATGATGCTTTCT 5'
1145Hordeum vulgareTATGGGACGGAGGGAGTATCTalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_72495.1 cdna:known chromosome:030312v2:3:542235938:542240994:1 gene:MLOC_72495 transcript:MLOC_72495.1217970.0110102.5
5'     TATGGGACGGAGGGAGTATCT        3'
| |o|||||||||||||| ||
3' AATAAAATCCTGCCTCCCTCAT-GATGCTTTC 5'
1146Hordeum vulgareTTTTGGGACGGAGTGAGTATTalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_59824.3 cdna:novel chromosome:030312v2:5:295978958:295982464:-1 gene:MLOC_59824 transcript:MLOC_59824.328150423
5'     TTTTGGGACGGAGTGAGTATT        3'
||||||||||||| |||||
3' GAATAAAACCCTGCCTCCCTCATTCATTTTTT 5'
1147Hordeum vulgareTTTTGGGACGGAGGGAGTACAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_59824.3 cdna:novel chromosome:030312v2:5:295978958:295982464:-1 gene:MLOC_59824 transcript:MLOC_59824.328150421
5'     TTTTGGGACGGAGGGAGTACA        3'
||||||||||||||||||| |
3' GAATAAAACCCTGCCTCCCTCAT-TCATTTTT 5'
1148Hordeum vulgareTATGGGACGGAGGGAGTATCTalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_26643.11 cdna:novel chromosome:030312v2:4:90497928:90501178:1 gene:MLOC_26643 transcript:MLOC_26643.1129690.03202.857143.5
5'     TATGGGACGGAGGGAGTATCT        3'
| | ||||||||o||||| ||
3' CATAAAAGCCTGCCTCTCTCAT-GAGAGAATA 5'
1149Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_52585.1 cdna:novel chromosome:030312v2:4:311693944:311697760:1 gene:MLOC_52585 transcript:MLOC_52585.1213880551.5
5'     TATTATGGGACGGAGGGAGTA        3'
| |||||||||||||||||o|
3' GAATACAATACCCTGCCTCCCTCGTTTACGTC 5'
1150Hordeum vulgareGCGAGCTTCTCGAAGATGTCGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_81642.2 cdna:novel chromosome:030312v2:1:428711220:428717090:-1 gene:MLOC_81642 transcript:MLOC_81642.2244022111
5'     GCGAGCTTCTCGAAGATGTCG        3'
||||||||||||| |||||||
3' CGGCCGCTCGAAGAGCTGCTACAGCAACTACT 5'
1151Hordeum vulgareCTCCGTTCCTAAATATAAGTTalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_51860.2 cdna:novel chromosome:030312v2:3:12123027:12128342:-1 gene:MLOC_51860 transcript:MLOC_51860.2234950.05623.5
5'     CTCCGTTCCTAAATATAAGTT        3'
|||||||||| ||||o| ||
3' GAGGGAGGCAAGGAATTATGT-CATATTCTGG 5'
1152Hordeum vulgareTGCAGTTGCTGCCTCAAGCTTalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_22069.6 cdna:novel chromosome:030312v2:3HL:6136431:6138520:1 gene:MLOC_22069 transcript:MLOC_22069.627170.02121.714292.5
5'     TGCAGTTGCTGCCTCAAGCTT        3'
oo|||||||||||||| |||o
3' AAAGGTGTCAACGACGGAGT-CGAGTACTTCT 5'
1153Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_37946.5 cdna:novel chromosome:030312v2:5:188989229:188992900:1 gene:MLOC_37946 transcript:MLOC_37946.521910192.111111.5
5'     TATTATGGGACGGAGGGAGTA        3'
|||| ||||||o|||||||||
3' GTCAATAAAACCCTGTCTCCCTCATAAACAGA 5'
1154Hordeum vulgareTTTTGGAACAGAGTGAGTACAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_78729.2 cdna:novel chromosome:030312v2:1H:12201189:12203890:1 gene:MLOC_78729 transcript:MLOC_78729.2114690.01664
5'     TTTTGGAACAGAGTGAGTACA        3'
||| |||||| | ||| ||||
3' ATTTAAATCCTTGTATAACTAATGTGGATCGA 5'
1155Hordeum vulgareCGCAGCTGTAGTCGCCGGCGTalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_68363.1 cdna:novel chromosome:030312v2:3:1893140:1895279:-1 gene:MLOC_68363 transcript:MLOC_68363.125460.04313
5'     CGCAGCTGTAGTCGCCGGCGT        3'
||||||o| || ||||||||o
3' CGGGGCGTCGGCCTCCGCGGCCGCGGCCGCGG 5'
1156Hordeum vulgareTATAGTACTCCCTCCGTCCCGalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_62271.1 cdna:novel chromosome:030312v2:1H:33825497:33826822:-1 gene:MLOC_62271 transcript:MLOC_62271.127520.02157.53.5
5'     TATAGTACTCCCTCCGTCCCG        3'
| |||| |||||||||||| o
3' TATTAGATCAAGAGGGAGGCAGGTTACATGAG 5'
1157Hordeum vulgareCTGACAGAAGAGAGTGAGCACalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_52321.4 cdna:novel chromosome:030312v2:3:518753505:518756746:-1 gene:MLOC_52321 transcript:MLOC_52321.426370411
5'     CTGACAGAAGAGAGTGAGCAC        3'
|||||||||||||| ||||||
3' AACAGACTGTCTTCTCTCTCTCGTGTCAACAC 5'
1158Hordeum vulgareTATTATGGGACGGAGGGAGTAalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_78409.3 cdna:novel chromosome:030312v2:5:560101869:560105791:1 gene:MLOC_78409 transcript:MLOC_78409.3224670192.111111.5
5'     TATTATGGGACGGAGGGAGTA        3'
|||| ||||||o|||||||||
3' GTCAATAAAACCCTGTCTCCCTCATCATTATT 5'
1159Hordeum vulgareTATACTCCCTCCGTCCGAAATalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_63462.1 cdna:novel chromosome:030312v2:2:53816820:53821954:1 gene:MLOC_63462 transcript:MLOC_63462.1217960.031053.5
5'     TATACTCCCTCCGTCCGAAAT        3'
| ||||||||||o||| |||
3' TAATAGATGAGGGAGGTAGGGTTTTATTCACA 5'
1160Malus domesticaTTGATGATGCTGCATCTGCAAalignmentplotGSM880656_apple_deg_procMDP000015315707800.02883.5
5'     TTGATGATGCTGCATCTGCAA        3'
| ||||||o|| | |||||||
3' AGACATCTACTATGAAGAAGACGTTCCGAACG 5'
1161Malus domesticaGGAATCTTGATGATGCTGCAalignmentplotGSM880656_apple_deg_procMDP0000130802013000420.5
5'     GGAATCTTGATGATGCTGCA         3'
||||||o|||||||||||||
3' CTACCCTTAGGACTACTACGACGTTATCTTTT 5'
1162Malus domesticaGCGTATGAGGAGCCATGCATAalignmentplotGSM880656_apple_deg_procMDP0000181200217500.0452.53.5
5'     GCGTATGAGGAGCCATGCATA        3'
||||||||||o |||||||
3' CGAAGGCATACTCCTTCGTACGTACGTTGTGT 5'
1164Malus domesticaGGAATCTTGATGATGCTGCAalignmentplotGSM880656_apple_deg_procMDP00002859550130004321.50.5
5'     GGAATCTTGATGATGCTGCA         3'
||||||o|||||||||||||
3' CTACCCTTAGGACTACTACGACGTTACCTTAT 5'
1166Malus domesticaGGAATCTTGATGATGCTGCAalignmentplotGSM880656_apple_deg_procMDP000029671621267072.333331
5'     GGAATCTTGATGATGCTGCA         3'
o|||||o|||||||||||||
3' TTACTCTTAGGACTACTACGACGTCATCTCTT 5'
1167Malus domesticaTCATCATCATCATCATCATCAalignmentplotGSM880656_apple_deg_procMDP00002943030890621
5'     TCATCATCATCATCATCAT-CA       3'
||||||||||||||||||| ||
3' TAGTAGTAGTAGTAGTAGTAGTACGTAAGAAG 5'
1168Malus domesticaCATCTTCCTCTTCCTCTTCCTalignmentplotGSM880656_apple_deg_procMDP000030062901240.04120.83
5'     CATCTTCCTCTTCCTCTTCCT        3'
| ||o|||||||| |||o|||
3' AGAAGAAGGAGGAGAAGTAGAGGGAGTGGTAG 5'
1169Malus domesticaGCTCTCTATGCTTCTGTCATCalignmentplotGSM880656_apple_deg_procMDP000074282814400.0373.54
5'     GCTCTCTATGCTTCTGTCATC        3'
||||| | |||o||||o|||
3' TTTTCGAGATAAACGGAGACGGTAAGATACTC 5'
1170Malus domesticaCATCTTCCTCTTCCTCTTCCTalignmentplotGSM880656_apple_deg_procMDP0000566422211590.05201.666672
5'     CATCTTCCTCTTCCTCTTCCT        3'
| ||||||||||||||||| |
3' AGAAGGAGAAGGAGAAGGAGAAG-AGGTTCAA 5'
1171Malus domesticaGTGCCTGTCTCCCTGTATGCCalignmentplotGSM880656_apple_deg_procMDP00009008932300.03553.5
5'     GTGCCTGTCTCCCTGTATGCC        3'
|||||||| | ||||| |o||
3' AGCCCACGGACA-AAGGACAGATGGCAATATG 5'
1174Malus domesticaTCTTCCCAAGCCCGCCCATTCCalignmentplotGSM880656_apple_deg_procMDP0000305711010540.029323.254
5'     TCTTCCCAAGCCCGCCCATTCC       3'
|||| || || || ||||||||
3' CAGCAGAAAGGCTCAGGGGGGTAAGGGTGTTA 5'
1175Malus domesticaGGAATCTTGATGATGCTGCAalignmentplotGSM880656_apple_deg_procMDP0000200319012730550.5
5'     GGAATCTTGATGATGCTGCA         3'
||||||o|||||||||||||
3' CTCCCCTTAGGACTACTACGACGTCGTCTCTT 5'
1176Malus domesticaTCTTCCCAAGCCCGCCCATTCCalignmentplotGSM880656_apple_deg_procMDP0000272830062509323.254
5'     TCTTCCCAAGCCCGCCCATTCC       3'
|||| || || || ||||||||
3' CAGCAGAAAGGCTCAGGAGGGTAAGGGTGTTA 5'
1177Malus domesticaGCTCTCTATGCTTCTGTCATCalignmentplotGSM880656_apple_deg_procMDP0000224116213910.04993
5'     GCTCTCTATGCTTCTGTCATC        3'
||o|| ||||||o|| |||||
3' TCTACGGGATATACGAGGA-AGTAGCATGTTC 5'
1178Medicago truncatulaTTCCACAGCTTTCTTGAACTTalignmentplotGSM643817_GDN-4gi|13596348|gb|BG581284.1|BG581284 EST483017 GVN Medicago truncatula cDNA clone pGVN-64K10 5' end, mRNA sequence01860.0310103.5
5'     TTCCACAGCTTTCTTGAACTT        3'
||||||||||| |||||| o
3' TTTAAAGGTGTCGAA-GAACTTTCGACGGTAG 5'
1179Medicago truncatulaTTTATTCTCAGTTTGTTGCTCalignmentplotGSM643817_GDN-4gi|8745860|gb|BE202597.1|BE202597 EST402619 KV1 Medicago truncatula cDNA clone pKV1-2A24, mRNA sequence15170.0240.5714293
5'     TTTATTCTCAGTTTGTTGCTC        3'
||||o|||||o| |||| |||
3' AGGTAAATGAGAGTTATACAA-GAGAGCGTTG 5'
1180Medicago truncatulaCGTTTAGGTCCCTTAACTTTAalignmentplotGSM643817_GDN-4gi|209562398|gb|GE345400.1|GE345400 MEUAN81TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence25320.0120.252
5'     CGTTTAGGTCCCTTAACTTTA        3'
|o||| |||||||||||||o|
3' TTCTGTAAA-CCAGGGAATTGAAGTGACGATC 5'
1181Medicago truncatulaTCGATAAACCTCTGCATCCAalignmentplotGSM643817_GDN-4gi|11895969|gb|BF631811.1|BF631811 NF008E10DT1F1072 Drought Medicago truncatula cDNA clone NF008E10DT 5', mRNA sequence2190.03212.5
5'     TCGATAAACCTCTGCATCCA         3'
||o|||||||||| |||||
3' GAGAAGTTATTTGGAGA-GTAGGAAACAAAGA 5'
1182Medicago truncatulaGGAATCTTGATGATTCTGCACalignmentplotGSM643817_GDN-4gi|7643303|gb|AW736449.1|AW736449 EST332463 KV3 Medicago truncatula cDNA clone pKV3-13M16, mRNA sequence056904916.33333
5'     GGAATCTTGATGATTCTGCAC        3'
o|||||o||||||| |||||
3' TACCTCTTAGGACTACTACGACGTCTTCTCTT 5'
1183Medicago truncatulaTCTTCTTCTTCTTCTTGCACCalignmentplotGSM643817_GDN-4gi|11965315|gb|BE248055.2|BE248055 NF001A03DT1F1017 Drought Medicago truncatula cDNA clone NF001A03DT 5', mRNA sequence2190.0120.08695652
5'     TCTTCTTCTTCTTCTTGCACC        3'
||||||||||||||||| | |
3' GTAGAGAAGAAGAAGAAGAAC-TAGATTCCTT 5'
1184Medicago truncatulaTCTTCTTCTTCTTCTTGCACCalignmentplotGSM643817_GDN-4gi|22088722|gb|AJ498279.1|AJ498279 AJ498279 MTPOSE Medicago truncatula cDNA clone mt--acc955203a09, mRNA sequence2760.0320.08695652
5'     TCTTCTTCTTCTTCTTGCACC        3'
||||||||||||||||| | |
3' GTAGAGAAGAAGAAGAAGAAC-TAGATTCCTT 5'
1185Medicago truncatulaTGGAGAAGCAGGGCACGTGCAalignmentplotGSM643817_GDN-4gi|209563603|gb|GE344778.1|GE344778 MEUAG72TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence21840.0550.2380953.5
5'     TGGAGAAGCAGGGCACGTGCA        3'
|o||||| ||o|||||o|||
3' CAAAATCTCTT-GTTCCGTGTACGACTGTTGT 5'
1186Medicago truncatulaTGGAGAAGCAGGGCACGTGCAalignmentplotGSM643817_GDN-4gi|11915228|gb|BF650098.1|BF650098 NF087H02EC1F1026 Elicited cell culture Medicago truncatula cDNA clone NF087H02EC 5', mRNA seq04220225.52
5'     TGGAGAAGCAGGGCACGTGCA        3'
|||||||||||||||| |||
3' TTGTACCTCTTCGTCCCGTGAACGAGTATAAG 5'
1187Medicago truncatulaGGGCTTCTCTTTCTTGGCAGGalignmentplotGSM643817_GDN-4gi|11958943|gb|BE316474.2|BE316474 NF035G01LF1F1004 Developing leaf Medicago truncatula cDNA clone NF035G01LF 5', mRNA sequence1328020.1818183
5'     GGGCTTCTCTTTCTTGGCAGG        3'
oo||||||||||||||| ||
3' GAAGTTCGAAGAGAAAGAACCATCGTAGACCA 5'
1188Medicago truncatulaTTCCACAGCTTTCTTGAACTTalignmentplotGSM643817_GDN-4gi|260523486|gb|GT140315.1|GT140315 METCV28TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence2503030.752
5'     TTCCACAGCTTTCTTGAACTT        3'
|||||||o|||o||||| |||
3' GTTGAAGGTGTTGAAGGAACTAGAAACTATAC 5'
1189Medicago truncatulaCGTCTTCATCATCATCACATTalignmentplotGSM643817_GDN-4gi|157979521|gb|EX527793.1|EX527793 MTGland_A033_2007-06-18/MTGlandA033_C04_014_1 Medicago truncatula A17 glandular trichome Med16380.05630.3477133
5'     CGTCTTCATCATCATCA-CATT       3'
|o|| |||||||||||| |||o
3' AGTAGTAGTAGTAGTAGTAGTAGTAGTAATAA 5'
1190Medicago truncatulaTGAAGCTGCCAGCATGATCTAalignmentplotGSM643817_GDN-4gi|11965303|gb|BE247883.2|BE247883 NF023B01DT1F1010 Drought Medicago truncatula cDNA clone NF023B01DT 5', mRNA sequence03260.0455114
5'     TGAAGCTGCCAGCATGATCTA        3'
||||||||||| ||||||
3' TTTATGTTCGACGGTCGGACTAGAATGTCCCA 5'
1191Medicago truncatulaTTACCTATTCCACCAATTCCATalignmentplotGSM643817_GDN-4gi|157983461|gb|EX531733.1|EX531733 MTGland_B027_2007-05-25/MTGlandB027_E09_036_1 Medicago truncatula A17 glandular trichome Med0680.034974974
5'     TTACCTATTCCACCAATTCCAT       3'
||||| ||||| || ||||||
3' CCGAAATGGTTAAGGAGGGTAAGGTTGTAATG 5'
1192Medicago truncatulaTCCAAAGGGATCGCATTGTTTalignmentplotGSM643817_GDN-4gi|10518586|gb|BE940827.1|BE940827 EST420406 MGHG Medicago truncatula cDNA clone pMGHG-2A7, mRNA sequence2322030.3750
5'     TCCAAAGGGATCGCATTGTTT        3'
|||||||||||||||||||||
3' CTGTAGGTTTCCCTAGCGTAACAAAGTATGAA 5'
1193Medicago truncatulaATTATTGTCAACGTGACTAGalignmentplotGSM643817_GDN-4gi|83665229|gb|DW015637.1|DW015637 EST1224598 MTY Medicago truncatula cDNA clone MTYA782, mRNA sequence26520.03222.5
5'     ATTATTGTCAACGTGACTAG         3'
||| |||o||||o|o|||||
3' TCTCTAA-AACGGTTGTATTGATCGTATCTAT 5'
1194Medicago truncatulaTTCCACAGCTTTCTTGAACTGalignmentplotGSM643817_GDN-4gi|209563259|gb|GE346711.1|GE346711 MEUAZ47TFB JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence05920.0251.253
5'    TTCCACA-GCTTTCTTGAACTG        3'
o||| || ||||||o|||||||
3' AACGAGGCGTACGAAAGGACTTGACCGAAGAG 5'
1195Medicago truncatulaTAAGACATCAGCTATAAGCTAalignmentplotGSM643817_GDN-4gi|27522998|gb|CA990104.1|CA990104 EST643612 GESD Medicago truncatula cDNA clone GESD-27F23, mRNA sequence22530.0530.4285713
5'     TAAGACATCAGCTATAAGCTA        3'
|||| ||o|| ||||||||o|
3' ACAGATTCGGTGGT-GATATTCGGTCTTGTTG 5'
1196Medicago truncatulaTACATTTTCTTCTTTATGTCTalignmentplotGSM643817_GDN-4gi|11935751|gb|BE325297.2|BE325297 NF120F01ST1F1013 Developing stem Medicago truncatula cDNA clone NF120F01ST 5', mRNA sequence04200.02223
5'     TACATTTTCTTCTTTATGTCT        3'
| ||||||||||o||||||o
3' TCTGTTATAAAAGAAGAGATACAGGGTTTGGA 5'
1197Medicago truncatulaATATAGCATCGTGAGCAATCAalignmentplotGSM643817_GDN-4gi|9679875|gb|AL380123.1|AL380123 MtBB50E12R1 MtBB Medicago truncatula cDNA clone MtBB50E12 T7, mRNA sequence23770.0330.4285712.5
5'     ATATAGCATCGTGAGCAATCA        3'
|||o|||||| |||||||| |
3' TCAATATGTCGTAG-ACTCGTTATTGTTACCG 5'
1198Medicago truncatulaTCTTCTTCTTCTTCTTGCACCalignmentplotGSM643817_GDN-4gi|11901900|gb|BF637742.1|BF637742 NF040D12PL1F1096 Phosphate starved leaf Medicago truncatula cDNA clone NF040D12PL 5', mRNA se2220.0120.08695652
5'     TCTTCTTCTTCTTCTTGCACC        3'
||||||||||||||||| | |
3' GTAGAGAAGAAGAAGAAGAAC-TAGATTCGAG 5'
1199Medicago truncatulaATATAGCATCGTGAGCAATCAalignmentplotGSM643817_GDN-4gi|89245650|gb|DY617437.1|DY617437 AC3425 NOLLY Medicago truncatula cDNA 5', mRNA sequence27690.0230.4285712.5
5'     ATATAGCATCGTGAGCAATCA        3'
|||o|||||| |||||||| |
3' TCAATATGTCGTAG-ACTCGTTATTGGTTACC 5'
1200Medicago truncatulaTCTTCTTCTTCTTCTTGCACCalignmentplotGSM643817_GDN-4gi|7560622|gb|AW685886.1|AW685886 NF031D10NR1F1000 Nodulated root Medicago truncatula cDNA clone NF031D10NR 5', mRNA sequence05590.05111.3753.5
5'     TCTTCTTCTTCTTCTTGCACC        3'
o||||o|| |||||o| ||||
3' AGGAGGAAGGAG-AGAAGGAGGTGGTGGCGGC 5'
1201Medicago truncatulaTGATACACTAGCACGGATCACalignmentplotGSM643817_GDN-4gi|57567314|gb|CX540289.1|CX540289 s13dNF68C08GS065_463852 Germinating Seed Medicago truncatula cDNA, mRNA sequence02070140.73.5
5'     TGATACACTAGCACGGATCAC        3'
||||||||o||| |o| o|||
3' TGGAACTATGTGGTCG-GTCGGGTGTACAGCA 5'
1202Medicago truncatulaTTAATCTAGGAAATTACACTCGalignmentplotGSM643817_GDN-4gi|57501596|gb|CX532877.1|CX532877 s13dNF46C06MJ038_272036 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago trunc23280130.5909091
5'     TTAATCTAGGAAATTACACTCG       3'
|||||| |||||||||||||||
3' GTTAAATTAGTTCCTTTAATGTGAGCTACGTC 5'
1203Medicago truncatulaTTTATTCTCAGTTTGTTGCTCalignmentplotGSM643817_GDN-4gi|57566747|gb|CX539722.1|CX539722 s13dNF67D06GS046_462714 Germinating Seed Medicago truncatula cDNA, mRNA sequence01550.0440.3636363.5
5'    TTTATTC-TCAGTTTGTTGCTC        3'
|||||o| ||| |||| |||||
3' TAGAAATAGGAAGTGAAACCACGAGGTGAAGT 5'
1204Medicago truncatulaTGCCTGGCTCCCTGTATGCCAalignmentplotGSM643817_GDN-4gi|20286000|gb|BQ148941.1|BQ148941 NF084G06FL1F1052 Developing flower Medicago truncatula cDNA clone NF084G06FL 5', mRNA sequenc0279040402
5'     TGCCTGGCTCCCTGTATGCCA        3'
|||||||||||||||||||
3' TCGTACGGACCGAGGGACATACGAACTACGTT 5'
1205Medicago truncatulaTTGGACTGAAGGGAGCTCCCalignmentplotGSM643817_GDN-4gi|14877734|gb|BI270282.1|BI270282 NF008H08FL1F1076 Developing flower Medicago truncatula cDNA clone NF008H08FL 5', mRNA sequenc06100.01102.53
5'     TTGGACTGAAGGGAGCTCCC         3'
||||||||||||| | |||
3' ACTTAACCTGACTTCCCAGG-GGGATAATATT 5'
1206Medicago truncatulaTGCCAAAGGAGATTTGCCCTGalignmentplotGSM643817_GDN-4gi|13783492|gb|BG648380.1|BG648380 EST509999 HOGA Medicago truncatula cDNA clone pHOGA-19J15 5' end, mRNA sequence239061.51.5
5'     TGCCAAAGGAGATTTGCCCTG        3'
||||||||||||||||||| o
3' ATTTACGGTTTCCTCTAAACGGGTTGTCCTGT 5'
1207Medicago truncatulaTTAATCTAGGAAATTACACTCGalignmentplotGSM643817_GDN-4gi|57493540|gb|CX524821.1|CX524821 s13dNF11D10AT090_478276 Aphid-Infected Shoots Medicago truncatula cDNA, mRNA sequence02000.0542214
5'     TTAATCTAGGAAATTACACTCG       3'
|||||| |||||||||| | |
3' GATTAATTAGTTCCTTTAATGCCA-CTATCTA 5'
1208Medicago truncatulaTTAATCTAGGAAAATACGGTGalignmentplotGSM643817_GDN-4gi|57493540|gb|CX524821.1|CX524821 s13dNF11D10AT090_478276 Aphid-Infected Shoots Medicago truncatula cDNA, mRNA sequence0200042212
5'     TTAATCTAGGAAAATACGGTG        3'
|||||| |||||| |||||||
3' GATTAATTAGTTCCTTTAATGCCACTATCTAT 5'
1209Medicago truncatulaTTCCACAGCTTTCTTGAACTTalignmentplotGSM643817_GDN-4gi|151386367|gb|EV256245.1|EV256245 MTYCU62TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence03050.051473.5
5'    TTCCACA-GCTTTCTTGAACTT        3'
|||| || ||||||o||||||
3' AAGAAGGCGTACGAAAGGACTTGACAAAAGAA 5'
1210Medicago truncatulaTGTTATTTCATCGATTTTGTTGalignmentplotGSM643817_GDN-4gi|209563606|gb|GE344781.1|GE344781 MEUAG75TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence16590.05814
5'     TGTTATTTCATCGATTTTGTTG       3'
| |o| ||||||o||||oo|||
3' AGTTAAAGT-AAGTAGTTAAAGTAACGAAGTT 5'
1211Medicago truncatulaTTGAGCCGTGCCAATATCACGalignmentplotGSM643817_GDN-4gi|33106441|gb|CF069782.1|CF069782 EST670503 MTUS Medicago truncatula cDNA clone MTUS-24C6, mRNA sequence09203081542.5
5'     TTGAGCCGTGCCAATATCACG        3'
||||||||o||||||||| |
3' CACTAACTCGGCGCGGTTATAGGGAACGCGAA 5'
1212Medicago truncatulaTAATCTGCATCCTGAGGTTTAalignmentplotGSM643817_GDN-4gi|161108073|gb|EY476819.1|EY476819 METAV56TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence02670147492
5'     TAATCTGCATCCTGAGGTTTA        3'
|||||||||||||||||| |
3' TAATATTAGACGTAGGACTCCATTTCCAAGAA 5'
1213Medicago truncatulaTGATTGAGTCGTGCCAATATCalignmentplotGSM643817_GDN-4gi|33106441|gb|CF069782.1|CF069782 EST670503 MTUS Medicago truncatula cDNA clone MTUS-24C6, mRNA sequence2950421
5'     TGATTGAGTCGTGCCAATATC        3'
||||||||o||o|||||||||
3' GACCACTAACTCGGCGCGGTTATAGGGAACGC 5'
1214Medicago truncatulaTTCCACAGCTTTCTTGAACTGalignmentplotGSM643817_GDN-4gi|7560553|gb|AW685817.1|AW685817 NF030F06NR1F1000 Nodulated root Medicago truncatula cDNA clone NF030F06NR 5', mRNA sequence06160.03151.363643.5
5'     TTCCACAGCTTTCTTGAACTG        3'
| ||||||||||||| | |o|
3' ATCGACGGTGTCGAAAGAAGT-GGCCTCGAAA 5'
1215Medicago truncatulaTGGAGAAGCAGGGCACGTGCAalignmentplotGSM643817_GDN-4gi|20293470|gb|BQ156411.1|BQ156411 NF092E09IR1F1071 Irradiated Medicago truncatula cDNA clone NF092E09IR 5', mRNA sequence21240.0150.2380952.5
5'     TGGAGAAGCAGGGCACGTGCA        3'
|o||||| ||o|||||o||||
3' CAAAATCTCTT-GTTCCGTGTACGTCTATCGT 5'
1216Medicago truncatulaTTTTGGGACGGAGGGAGTATAalignmentplotGSM643817_GDN-4gi|157982721|gb|EX530993.1|EX530993 MTGland_B017_2007-05-25/MTGlandB017_H11_041_1 Medicago truncatula A17 glandular trichome Med2115020.6666672.5
5'     TTTTGGGACGGAGGGAGTATA        3'
||||||||||||||||||o
3' ATGTTAAACCCTGCCTCCCTCATGAGGGAATT 5'
1217Medicago truncatulaTGCCTGGCTCCCTGTATGCCAalignmentplotGSM643817_GDN-4gi|14883236|gb|BI273231.1|BI273231 NF097C02FL1F1017 Developing flower Medicago truncatula cDNA clone NF097C02FL 5', mRNA sequenc04101881880.5
5'     TGCCTGGCTCCCTGTATGCCA        3'
||||||||||||||o||||||
3' TAGTACGGACCGAGGGACGTACGGTCGTCCTT 5'
1218Medicago truncatulaTCCAAAGGGATCGCATTGTTTalignmentplotGSM643817_GDN-4gi|151388508|gb|EV258379.1|EV258379 MTYDJ65TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence06500178.50.5
5'     TCCAAAGGGATCGCATTGTTT        3'
|||||||||||||||||||o|
3' CTGTAGGTTTCCCTAGCGTAACAGAGGTTGAA 5'
1219Medicago truncatulaTCCAAAGGGATCGCATTGATCalignmentplotGSM643817_GDN-4gi|151388508|gb|EV258379.1|EV258379 MTYDJ65TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence06500178.51
5'     TCCAAAGGGATCGCATTGATC        3'
|||||||||||||||||| ||
3' CTGTAGGTTTCCCTAGCGTAAC-AGAGGTTGA 5'
1220Medicago truncatulaATGCATGTGCATGTGCATCTGalignmentplotGSM643817_GDN-4gi|14982947|gb|BI308620.1|BI308620 EST530030 GPOD Medicago truncatula cDNA clone pGPOD-7K16 5' end, mRNA sequence18070.05334
5'     ATGCATGTGCATGTGCATCTG        3'
||| ||o|o|||o||||o|oo
3' TATTTACATATATGTATACGTGGGTAACACTG 5'
1221Medicago truncatulaAACTTAAATATGTTTTCAGTCCalignmentplotGSM643817_GDN-4gi|11906327|gb|BF642169.1|BF642169 NF017C04IN1F1034 Insect herbivory Medicago truncatula cDNA clone NF017C04IN 5', mRNA sequence23040.0140.3333332.5
5'     AACTTAAATATGTTTTCAGTCC       3'
|||| |||o|| ||||||||||
3' ATATTTGACTTTGTAAAAAAGTCAGGATCCTA 5'
1222Medicago truncatulaAGTTTTCCTCGGTAGTTAACTalignmentplotGSM643817_GDN-4gi|6605651|gb|AW257394.1|AW257394 EST305531 KV2 Medicago truncatula cDNA clone KV2-9H1, mRNA sequence04760.0351.253.5
5'     AGTTTTCCTCGGTAGTTAACT        3'
||o|o| |||o|o||o|||||
3' TAACTCGAGA-GAGTCGTCGATTGAACAGAAG 5'
1223Medicago truncatulaTTACCTATTCCACCAATTCCATalignmentplotGSM643817_GDN-4gi|9685795|gb|AL386044.1|AL386044 MtBC32C04F1 MtBC Medicago truncatula cDNA clone MtBC32C04 T3, mRNA sequence0130.011351.731933
5'     TTACCTATTCCACCAATTCCAT       3'
oo||||| |||||||||o|||o
3' TAGTGGTGGATCAGGTGGTTAGGGTG 5'
1224Medicago truncatulaTGGAGAAGCAGGGCACATGCTalignmentplotGSM643817_GDN-4gi|57485828|gb|CX517302.1|CX517302 s13dNF07C11VI086_399623 Virus-Infected Leaves Medicago truncatula cDNA, mRNA sequence219050.2380952
5'     TGGAGAAGCAGGGCACATGCT        3'
|o||||| ||o||||||||||
3' CAAAATCTCTT-GTTCCGTGTACGACTGTTGT 5'
1225Medicago truncatulaTCAAGATGCTTGGGTTTTGGAalignmentplotGSM643817_GDN-4gi|151387296|gb|EV257167.1|EV257167 MTYD529TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence04040.01224
5'     TCAAGATGCTTGGGTTTTGGA        3'
|| ||| |||||| oo|||||
3' CCAGAGATCTTCGAACCAGGAACCTTATGAAA 5'
1226Medicago truncatulaTCCTCGGTACCTATGTTGATalignmentplotGSM643817_GDN-4gi|10699935|gb|BE999659.1|BE999659 EST431382 GVSN Medicago truncatula cDNA clone pGVSN-24M7, mRNA sequence05460.01121.714293.5
5'     TCCTCGGTACCTATGTTGAT         3'
||| |o|||||o ||||o||
3' TTAAAGGTGTCATGGGAACAATTAGAAACACC 5'
1227Medicago truncatulaTGTTATTTCATCGATTTTGTTGalignmentplotGSM643817_GDN-4gi|161109822|gb|EY478525.1|EY478525 METBF24TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence17640.04814
5'     TGTTATTTCATCGATTTTGTTG       3'
| |o| ||||||o||||oo|||
3' AGTTAAAGT-AAGTAGTTAAAGTAACGAAGTT 5'
1228Medicago truncatulaTTTTGGGACGGAGGGAGTATAalignmentplotGSM643817_GDN-4gi|157979068|gb|EX527340.1|EX527340 MTGland_A027_2007-06-13/MTGlandA027_E06_020_1 Medicago truncatula A17 glandular trichome Med2139020.51
5'     TTTTGGGACGGAGGGAGTATA        3'
||||||||||||||||||||
3' ATGTTAAACCCTGCCTCCCTCATATTATATAA 5'
1229Medicago truncatulaATTTGGGACGGAGGGAGTAATalignmentplotGSM643817_GDN-4gi|157979068|gb|EX527340.1|EX527340 MTGland_A027_2007-06-13/MTGlandA027_E06_020_1 Medicago truncatula A17 glandular trichome Med2139020.51
5'     ATTTGGGACGGAGGGAGTAAT        3'
||||||||||||||||||| |
3' ATGTTAAACCCTGCCTCCCTCAT-ATTATATA 5'
1230Medicago truncatulaTGCCAAAGGAGATTTGCCCTGalignmentplotGSM643817_GDN-4gi|13781151|gb|BG646039.1|BG646039 EST507658 KV3 Medicago truncatula cDNA clone pKV3-48E12 5' end, mRNA sequence263061.51.5
5'     TGCCAAAGGAGATTTGCCCTG        3'
||||||||||||||||||| o
3' ATTTACGGTTTCCTCTAAACGGGTTGTCCTGT 5'
1231Medicago truncatulaCGTCTTCATCATCATCACATTalignmentplotGSM643817_GDN-4gi|157982941|gb|EX531213.1|EX531213 MTGland_B020_2007-05-15/MTGlandB020__G12_042_1 Medicago truncatula A17 glandular trichome Me1520.02222.5
5'     CGTCTTCATCATCATCACATT        3'
|| ||||||||||o||||||
3' GTCGCCA-AAGTAGTAGTGGTGTAAGCGATAA 5'
1232Medicago truncatulaTTAATCTAGGAAATTACACTCGalignmentplotGSM643817_GDN-4gi|11962065|gb|BE317535.2|BE317535 NF051B08LF1F1061 Developing leaf Medicago truncatula cDNA clone NF051B08LF 5', mRNA sequence03360130.5909091
5'     TTAATCTAGGAAATTACACTCG       3'
|||||| |||||||||||||||
3' GTTAAATTAGTTCCTTTAATGTGAGCTACGTC 5'
1233Medicago truncatulaAGATTGAGACTTGTATGGCTTalignmentplotGSM643817_GDN-4gi|14881697|gb|BI272404.1|BI272404 NF024H12FL1F1103 Developing flower Medicago truncatula cDNA clone NF024H12FL 5', mRNA sequenc21320.0450.7142863
5'     AGATTGAGACTTGTATGGCTT        3'
|||| || |||||||||| ||
3' CACCTCTACCTATGAACATACCAAAAAATCCA 5'
1234Medicago truncatulaTTAATCTAGGAAATTACACTCGalignmentplotGSM643817_GDN-4gi|209562076|gb|GE343848.1|GE343848 MEUA594TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence0336029293
5'     TTAATCTAGGAAATTACACTCG       3'
|||||| |o|||||o||||| |
3' AAAAAATTAGTTTCTTTAGTGTGAACTCAACT 5'
1235Medicago truncatulaTGATAGTGTCAACTAGTACAGalignmentplotGSM643817_GDN-4gi|157982243|gb|EX530515.1|EX530515 MTGland_A068_2007-06-27/MTGlandA068_A07_032_1 Medicago truncatula A17 glandular trichome Med0663023230.5
5'     TGATAGTGTCAACTAGTACAG        3'
|||||||||||||||o|||||
3' ATAAACTATCACAGTTGATTATGTCTTTTAAA 5'
1236Medicago truncatulaTTGCTTGGTGCTGGTCGGGAAalignmentplotGSM643817_GDN-4gi|7717507|gb|AW773594.1|AW773594 EST332580 KV3 Medicago truncatula cDNA clone pKV3-15A19, mRNA sequence02790.024113.66674
5'     TTGCTTGGTGCTGGTCGGGAA        3'
||||||||||| | |||||
3' CCCCAACGAACCACGTCGAGCCCCATACTCCC 5'
1237Medicago truncatulaATATAGCATCGTGAGCAATCAalignmentplotGSM643817_GDN-4gi|57486979|gb|CX518453.1|CX518453 s13dNF32B09VI077_423739 Virus-Infected Leaves Medicago truncatula cDNA, mRNA sequence25260.0330.4285712.5
5'     ATATAGCATCGTGAGCAATCA        3'
|||o|||||| |||||||| |
3' TCAATATGTCGTAG-ACTCGTTATTGTTACCG 5'
1238Medicago truncatulaTTGACAGAAGATAGAGGGCACalignmentplotGSM643817_GDN-4gi|209566340|gb|GE347410.1|GE347410 MEUB696TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence0171012441.33330.5
5'     TTGACAGAAGATAGAGGGCAC        3'
||||||||||||||||o||||
3' TCACAACTGTCTTCTATCTCTCGTGTTGGGCT 5'
1239Medicago truncatulaTGAGCCAGGATGGCTTGCCGGalignmentplotGSM643817_GDN-4gi|9056606|gb|BE240422.1|BE240422 EST404471 MHRP- Medicago truncatula cDNA clone pMHRP-45I5, mRNA sequence026031313.5
5'    TGAGCC-AGGATGGCTTGCCGG        3'
|||||| ||||||o |||||oo
3' GCAACTCGGTTCCTACTAAACGGTTTCATTAC 5'
1240Medicago truncatulaTGAGCCAAAGATGACTTGCCGalignmentplotGSM643817_GDN-4gi|9056606|gb|BE240422.1|BE240422 EST404471 MHRP- Medicago truncatula cDNA clone pMHRP-45I5, mRNA sequence2270.01552.5
5'     TGAGCCAAAGATGACTTGCCG        3'
|||||||| ||||| |||||o
3' TGCAACTCGGTTCCTACTAAACGGTTTCATTA 5'
1241Medicago truncatulaTGACAGAAGAGAGTGAGCACalignmentplotGSM643817_GDN-4gi|209566340|gb|GE347410.1|GE347410 MEUB696TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence21700.01212
5'     TGACAGAAGAGAGTGAGCAC         3'
|||||||||| || ||||||
3' CACAACTGTCTTCTATCTCTCGTGTTGGGCTC 5'
1242Medicago truncatulaTTACCGATTCCACCCATTCCTAalignmentplotGSM643817_GDN-4gi|14879956|gb|BI271442.1|BI271442 NF051F06FL1F1059 Developing flower Medicago truncatula cDNA clone NF051F06FL 5', mRNA sequenc0620.0112124
5'     TTACCGATTCCACCCATTCCTA       3'
o| ||o|||||| |||||| ||
3' AATGGAAGGTTAAGGTAGGTAAG-ATTTTTGG 5'
1243Medicago truncatulaATACTCCCTCCGTCTCAAATTalignmentplotGSM643817_GDN-4gi|27404054|gb|CA917124.1|CA917124 EST641271 GPOD Medicago truncatula cDNA clone GPOD-35O19, mRNA sequence22960.01222.5
5'     ATACTCCCTCCGTCTCAAATT        3'
||||| |||| o|||||||||
3' TAGGTATGA-GGAGTTAGAGTTTAACAAGGCA 5'
1244Medicago truncatulaTTAATCTAGGAAATTACACTCGalignmentplotGSM643817_GDN-4gi|14870189|gb|BI266242.1|BI266242 NF089D06IN1F1058 Insect herbivory Medicago truncatula cDNA clone NF089D06IN 5', mRNA sequence03300130.5909093
5'     TTAATCTAGGAAATTACACTCG       3'
|||||| ||| ||| |||||||
3' GTTAAATTAGTTCCATTANTGTGAGCTACGTC 5'
1245Medicago truncatulaTGCCAAAGGAGATTTGCCCTGalignmentplotGSM643817_GDN-4gi|20281110|gb|BQ144051.1|BQ144051 NF028G06DT1F1049 Drought Medicago truncatula cDNA clone NF028G06DT 5', mRNA sequence2167061.51.5
5'     TGCCAAAGGAGATTTGCCCTG        3'
||||||||||||||||||| o
3' ATTTACGGTTTCCTCTAAACGGGTTGTCCTGT 5'
1246Medicago truncatulaTTCCACAGCTTTCTTGAACTTalignmentplotGSM643817_GDN-4gi|8172992|gb|AW981431.1|AW981431 EST392584 DSIL Medicago truncatula cDNA clone pDSIL-16F7, mRNA sequence05730.03357178.53
5'    TTCCACA-GCTTTCTTGAACTT        3'
||||||| ||||||||||||
3' ACTAAGGTGTCCGAAAGAACTTGCCAACGCCG 5'
1247Medicago truncatulaTGTTATTTCATCGATTTTGTTGalignmentplotGSM643817_GDN-4gi|151386640|gb|EV256518.1|EV256518 MTYCX85TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence1620.01223.5
5'     TGTTATTTCATCGATTTTGTTG       3'
|||| ||o||||| |||||||
3' AACAACAAGAAGGTAGCAAAAACAAACTAAGA 5'
1248Medicago truncatulaTTAATCTAGGAAATTACACTCGalignmentplotGSM643817_GDN-4gi|20292305|gb|BQ155246.1|BQ155246 NF078C11IR1F1086 Irradiated Medicago truncatula cDNA clone NF078C11IR 5', mRNA sequence12240212.5
5'     TTAATCTAGGAAATTACACTCG       3'
|||||| |o||||||||||| |
3' CAAAAATTAGTTTCTTTAATGTGAACATTAAC 5'
1249Medicago truncatulaTTGGACTGAAGGGAGCTCCCalignmentplotGSM643817_GDN-4gi|83664945|gb|DW015353.1|DW015353 EST1224314 MTY Medicago truncatula cDNA clone MTYA406, mRNA sequence05650993
5'     TTGGACTGAAGGGAGCTCCC         3'
o|||||||||||| | o|||
3' CATTGACCTGACTTCCC-CAGGGGAGACTCAT 5'
1250Medicago truncatulaTTACCTATTCCACCAATTCCATalignmentplotGSM643817_GDN-4gi|209563266|gb|GE343973.1|GE343973 MEUA743TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence03600.011351.731933
5'     TTACCTATTCCACCAATTCCAT       3'
oo||||| |||||||||o|||o
3' TAGTGGTGGATCAGGTGGTTAGGGTGGACTAG 5'
1251Medicago truncatulaCGTCTTCATCATCATCACATTalignmentplotGSM643817_GDN-4gi|14879629|gb|BI271284.1|BI271284 NF014D03FL1F1029 Developing flower Medicago truncatula cDNA clone NF014D03FL 5', mRNA sequenc1560.05630.3477133
5'     CGTCTTCATCATCATCA-CATT       3'
|o|| |||||||||||| |||o
3' AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAG 5'
1252Medicago truncatulaCGTCTTCATCATCATCACATTalignmentplotGSM643817_GDN-4gi|14879629|gb|BI271284.1|BI271284 NF014D03FL1F1029 Developing flower Medicago truncatula cDNA clone NF014D03FL 5', mRNA sequenc1590.05630.3477133
5'     CGTCTTCATCATCATCA-CATT       3'
|o|| |||||||||||| |||o
3' AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAG 5'
1253Medicago truncatulaTTACCGATTCCACCCATTCCTAalignmentplotGSM643817_GDN-4gi|14879902|gb|BI271414.1|BI271414 NF050F09FL1F1079 Developing flower Medicago truncatula cDNA clone NF050F09FL 5', mRNA sequenc0176025253
5'     TTACCGATTCCACCCATTCCTA       3'
|| ||o||||||||||| ||o|
3' GATAAAAGGTTAAGGTGGGTACGGGTTTCCGT 5'
1254Medicago truncatulaGGAATCTTGATGATTCTGCACalignmentplotGSM643817_GDN-4gi|13602943|gb|BG587879.1|BG587879 EST489654 KV3 Medicago truncatula cDNA clone pKV3-13M16 5' end, mRNA sequence055904916.33333
5'     GGAATCTTGATGATTCTGCAC        3'
o|||||o||||||| |||||
3' TACCTCTTAGGACTACTACGACGTCTTCTCTT 5'
1255Medicago truncatulaTACAATTCCTTAGGTGCTTTTalignmentplotGSM643817_GDN-4gi|209561715|gb|GE346021.1|GE346021 MEUAU81TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence06040.0330.754
5'     TACAATTCCTTAGGTGCTTTT        3'
| ||||||||o| || ||o||
3' CCGAAAGTTAAGGAGTACA-GAGAAGGAACAC 5'
1256Medicago truncatulaTGCCAAAGGAGATTTGCCCTGalignmentplotGSM643817_GDN-4gi|13779528|gb|BG644416.1|BG644416 EST506035 KV3 Medicago truncatula cDNA clone pKV3-37A6 5' end, mRNA sequence0156035351.5
5'     TGCCAAAGGAGATTTGCCCTG        3'
||||||||o|||||||||| |
3' GACTACGGTTTCTTCTAAACGGG-CGGTCCTA 5'
1257Medicago truncatulaTGCCAAAGGAGAGTTGCCCalignmentplotGSM643817_GDN-4gi|13779528|gb|BG644416.1|BG644416 EST506035 KV3 Medicago truncatula cDNA clone pKV3-37A6 5' end, mRNA sequence0156035351.5
5'     TGCCAAAGGAGAGTTGCCC          3'
||||||||o||| ||||||
3' GACTACGGTTTCTTCTAAACGGGCGGTCCTAT 5'
1258Medicago truncatulaTTTTGGGACGGAGGGAGTATAalignmentplotGSM643817_GDN-4gi|157980308|gb|EX528580.1|EX528580 MTGland_A043_2007-05-31/MTGlandA043_E06_020_1 Medicago truncatula A17 glandular trichome Med0672020.51
5'     TTTTGGGACGGAGGGAGTATA        3'
||||||||||||||||||||
3' ATGTTAAACCCTGCCTCCCTCATATTCACTTC 5'
1259Medicago truncatulaATTTGGGACGGAGGGAGTAATalignmentplotGSM643817_GDN-4gi|157980308|gb|EX528580.1|EX528580 MTGland_A043_2007-05-31/MTGlandA043_E06_020_1 Medicago truncatula A17 glandular trichome Med0672020.51
5'     ATTTGGGACGGAGGGAGTAAT        3'
||||||||||||||||||| |
3' ATGTTAAACCCTGCCTCCCTCAT-ATTCACTT 5'
1260Medicago truncatulaTTGGATTGAAGGGAGCTCTalignmentplotGSM643817_GDN-4gi|57567005|gb|CX539980.1|CX539980 s13dNF43D07GS058_463232 Germinating Seed Medicago truncatula cDNA, mRNA sequence06110.05102.53.5
5'     TTGGATTGAAGGGAGCTCT          3'
|||||o||||||| |o|o
3' ACTTAACCTGACTTCCCAGGGGGATAATATTG 5'
1261Medicago truncatulaTTCCACAGCTTTCTTGAACTTalignmentplotGSM643817_GDN-4gi|27233382|gb|CA859018.1|CA859018 EST636273 GLSD Medicago truncatula cDNA clone pGLSD-39B20, mRNA sequence02250.028148143
5'    TTCCACA-GCTTTCTTGAACTT        3'
||||||| ||||||||||||
3' TCTAAGGTGTCCGAAAGAACTTGCCATTGCTG 5'
1262Medicago truncatulaTGACAGAAGATAGAGGGCACalignmentplotGSM643817_GDN-4gi|10703511|gb|BF003186.1|BF003186 EST431734 KV1 Medicago truncatula cDNA clone pKV1-2N11, mRNA sequence22730.03300.6818182.5
5'     TGACAGAAGATAGAGGGCAC         3'
o||||||o|||o|||||||
3' GTGTTTTGTCTTTTATTTCCCGTGTGTATCCT 5'
1263Medicago truncatulaTTGAGCCGTGCCAATATCACGalignmentplotGSM643817_GDN-4gi|20455996|gb|BQ255243.1|BQ255243 MTNAE61TKM KVKC Medicago truncatula cDNA clone pKVKC-5F1, mRNA sequence051903573572.5
5'     TTGAGCCGTGCCAATATCACG        3'
||||||||o||||||||| |
3' CACTAACTCGGCGCGGTTATAGGGAACGCGCA 5'
1264Medicago truncatulaTGCCAAAGGAGATTTGCCCTGalignmentplotGSM643817_GDN-4gi|13779528|gb|BG644416.1|BG644416 EST506035 KV3 Medicago truncatula cDNA clone pKV3-37A6 5' end, mRNA sequence21020992.5
5'     TGCCAAAGGAGATTTGCCCTG        3'
||||||||||||| ||||| o
3' TTTCACGGTTTCCTCTATACGGGTTAACGCTT 5'
1265Medicago truncatulaTGATACACTAGCACGGATCACalignmentplotGSM643817_GDN-4gi|27404253|gb|CA917323.1|CA917323 EST641470 GPOD Medicago truncatula cDNA clone GPOD-35F18, mRNA sequence07210140.73.5
5'     TGATACACTAGCACGGATCAC        3'
||||||||o||| |o| o|||
3' TGGAACTATGTGGTCG-GTCGGGTGTACAGCA 5'
1266Medicago truncatulaTAATCTGCATCCTGAGGTTTAalignmentplotGSM643817_GDN-4gi|209566404|gb|GE348194.1|GE348194 MEUBF76TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence04470147492
5'     TAATCTGCATCCTGAGGTTTA        3'
|||||||||||||||||| |
3' TAATATTAGACGTAGGACTCCATTTCCAAGAA 5'
1267Medicago truncatulaTCCAAAGGGATCGCATTGTTTalignmentplotGSM643817_GDN-4gi|11609208|gb|BF520525.1|BF520525 EST457996 DSIL Medicago truncatula cDNA clone pDSIL-24I14, mRNA sequence2397030.3750
5'     TCCAAAGGGATCGCATTGTTT        3'
|||||||||||||||||||||
3' CTGTAGGTTTCCCTAGCGTAACAAAGTATGAA 5'
1268Medicago truncatulaTGATTGAGTCGTGCCAATATCalignmentplotGSM643817_GDN-4gi|20455996|gb|BQ255243.1|BQ255243 MTNAE61TKM KVKC Medicago truncatula cDNA clone pKVKC-5F1, mRNA sequence2522011111
5'     TGATTGAGTCGTGCCAATATC        3'
||||||||o||o|||||||||
3' AACCACTAACTCGGCGCGGTTATAGGGAACGC 5'
1269Medicago truncatulaAGTTTTCCTCGGTAGTTAACTalignmentplotGSM643817_GDN-4gi|11930806|gb|BE320886.2|BE320886 NF028A05RT1F1033 Developing root Medicago truncatula cDNA clone NF028A05RT 5', mRNA sequence0127051.253.5
5'     AGTTTTCCTCGGTAGTTAACT        3'
||o|o| |||o|o||o|||||
3' TAACTCGAGA-GAGTCGTCGATTGAACAGAAG 5'
1270Medicago truncatulaTGATACACTAGCACGGATCACalignmentplotGSM643817_GDN-4gi|148765991|gb|ES612685.1|ES612685 MTGland_A023_2007-05-04/MTGlandA023_D08_029_1 Medicago truncatula A17 glandular trichome Med03470.03140.73.5
5'     TGATACACTAGCACGGATCAC        3'
||||||||o||| |o| o|||
3' TGGAACTATGTGGTCG-GTCGGGTGTATAGCA 5'
1271Medicago truncatulaTCGATAAACCTCTGCATCCAalignmentplotGSM643817_GDN-4gi|260520284|gb|GT136120.1|GT136120 METBK06TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence13930212.5
5'     TCGATAAACCTCTGCATCCA         3'
||o|||||||||| |||||
3' GAGAAGTTATTTGGAGA-GTAGGAAACAAAGA 5'
1272Medicago truncatulaGGAATCTTGATGATTCTGCACalignmentplotGSM643817_GDN-4gi|57490008|gb|CX521424.1|CX521424 s13dNF75H10VI090_450634 Virus-Infected Leaves Medicago truncatula cDNA, mRNA sequence03220.01266.52.5
5'     GGAATCTTGATGATTCTGCAC        3'
||||||o||||||| |||||
3' CCACCCTTAGGACTACTACGACGTCGTCGTCA 5'
1273Medicago truncatulaTTCCACAGCTTTCTTGAACTTalignmentplotGSM643817_GDN-4gi|20176305|gb|BQ124343.1|BQ124343 EST609919 GLSD Medicago truncatula cDNA clone pGLSD-35E7, mRNA sequence07701263
5'    TTCCAC-AGCTTTCTTGAACTT        3'
|||||| |||||||||||||
3' ACAAAGGTGTTCGAAAGAACTTGCTAAAGCTG 5'
1274Medicago truncatulaTTTGGGATCAGAAATTAGAGAalignmentplotGSM643817_GDN-4gi|57503511|gb|CX534792.1|CX534792 s13dNF77H03MJ032_331275 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago trunc13790.0520.3333334
5'     TTTGGGATCAGAAATTAGAGA        3'
|||||o||||||| | |o ||
3' GTCGAAACCTTAGTCTT-ACTTACTAGTTCAA 5'
1275Medicago truncatulaTGGAGAAGCAGGGCACATGCTalignmentplotGSM643817_GDN-4gi|13370135|gb|BG451341.1|BG451341 NF107D04DT1F1032 Drought Medicago truncatula cDNA clone NF107D04DT 5', mRNA sequence2495050.2380952
5'     TGGAGAAGCAGGGCACATGCT        3'
|o||||| ||o||||||||||
3' CAAAATCTCTT-GTTCCGTGTACGACNGTTGT 5'
1276Medicago truncatulaTCCTCGGTACCTATGTTGATalignmentplotGSM643817_GDN-4gi|9196052|gb|BE322275.1|BE322275 NF022E02IN1F1008 Insect herbivory Medicago truncatula cDNA clone NF022E02IN 5', mRNA sequence05990.02121.714293.5
5'     TCCTCGGTACCTATGTTGAT         3'
||| |o|||||o ||||o||
3' TTAAAGGTGTCATGGGAACAATTAGAAACACC 5'
1277Medicago truncatulaTTACCTATTCCACCAATTCCATalignmentplotGSM643817_GDN-4gi|11935465|gb|AW696680.2|AW696680 NF109F07ST1F1062 Developing stem Medicago truncatula cDNA clone NF109F07ST 5', mRNA sequence21230.01223
5'     TTACCTATTCCACCAATTCCAT       3'
|| ||||||||||| ||o|||o
3' ACAGAAGGGATAAGGTGGGTAGGGTGTTTAAG 5'
1278Medicago truncatulaTTACCGATTCCACCCATTCCTAalignmentplotGSM643817_GDN-4gi|11935465|gb|AW696680.2|AW696680 NF109F07ST1F1062 Developing stem Medicago truncatula cDNA clone NF109F07ST 5', mRNA sequence21230.03223.5
5'     TTACCGATTCCACCCATTCCTA       3'
|| || |||||||||||o|| |
3' ACAGAAGGGATAAGGTGGGTAGGG-TGTTTAA 5'
1279Medicago truncatulaCCTCTTCCTCTTCCTCTTCCACalignmentplotGSM643817_GDN-4gi|13606813|gb|BG588673.1|BG588673 EST490482 MHRP- Medicago truncatula cDNA clone pMHRP-57M15, mRNA sequence23490.0450.1923082.5
5'     CCTCTTCCTCTTCCTCTTCCAC       3'
| || |||||o|||||||||||
3' ATGAGCAGTAGGAGGAGGAGAAGGTGGACGGT 5'
1280Medicago truncatulaTTAATCTAGGAAATTACACTCGalignmentplotGSM643817_GDN-4gi|260519358|gb|GT137907.1|GT137907 METC385TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence237104120.51.5
5'     TTAATCTAGGAAATTACACTCG       3'
|||||| ||||||||||||o||
3' TATTAATTAGTTCCTTTAATGTGGGCTACCTT 5'
1281Medicago truncatulaTGGAGAAGCAGGGCACGTGCAalignmentplotGSM643817_GDN-4gi|13371358|gb|BG452564.1|BG452564 NF078F03LF1F1028 Developing leaf Medicago truncatula cDNA clone NF078F03LF 5', mRNA sequence13550314
5'     TGGAGAAGCAGGGCACGTGCA        3'
||||||||||| | |||||
3' GTTCACCTCTTCGTCAGTT-CACGTTTGTCAT 5'
1282Medicago truncatulaTGTGTTCTCAGGTCGCCCCTalignmentplotGSM643817_GDN-4gi|22083858|gb|AJ502930.1|AJ502930 AJ502930 MTAMP Medicago truncatula cDNA clone mtgmadc120027d12, mRNA sequence0460.05882.754
5'     TGTGTTCTCAGGTCGCCCCT         3'
|||| ||||||| o||||o
3' AGTTACACTAGAGTCCTTTGGGGGTCTCTCTT 5'
1283Medicago truncatulaCGTCTTCATCATCATCACATTalignmentplotGSM643817_GDN-4gi|13368671|gb|BG449889.1|BG449889 NF071H03IN1F1031 Insect herbivory Medicago truncatula cDNA clone NF071H03IN 5', mRNA sequence05330.02333
5'     CGTCTTCATCATCATCA-CATT       3'
| ||o|||||||||||| |||o
3' AGAAGGAGGAGTAGTAGTAGTCGTAGCAGAAG 5'
1284Medicago truncatulaTGGAGAAGCAGGGCACGTGCAalignmentplotGSM643817_GDN-4gi|14982448|gb|BI308121.1|BI308121 EST529531 GPOD Medicago truncatula cDNA clone pGPOD-2M23 5' end, mRNA sequence0751012123
5'     TGGAGAAGCAGGGCACGTGCA        3'
||||||||||||o|||||o
3' CTCAACCTCTTCGTCCTGTGCATTCGACTTAG 5'
1285Medicago truncatulaTACAATTCCTTAGGTGCTTTTalignmentplotGSM643817_GDN-4gi|14878965|gb|BI270917.1|BI270917 NF055F08FL1F1075 Developing flower Medicago truncatula cDNA clone NF055F08FL 5', mRNA sequenc15130213.5
5'     TACAATTCCTTAGGTGCTTTT        3'
|| |||| || ||o|||||||
3' CAAAATCTTAATGA-TCTACGAAAACTAGGAA 5'
1286Medicago truncatulaTTCCACAGCTTTCTTGAACTTalignmentplotGSM643817_GDN-4gi|20290484|gb|BQ153425.1|BQ153425 NF036F04IR1F1041 Irradiated Medicago truncatula cDNA clone NF036F04IR 5', mRNA sequence02100.0424243.5
5'     TTCCACAGCTTTCTTGAACTT        3'
||| |||||||o|o||||| o
3' GTCGAAGTTGTCGAAGGGACTTGCGTAAATGT 5'
1287Medicago truncatulaTTTGGATTGAAGGGAGCTCalignmentplotGSM643817_GDN-4gi|11906925|gb|BF642767.1|BF642767 NF072B01IN1F1011 Insect herbivory Medicago truncatula cDNA clone NF072B01IN 5', mRNA sequence0840841.5
5'     TTTGGATTGAAGGGAGCTC          3'
||||||||||||o||| ||
3' CAACAAACCTAACTTCTCTC-AGAAATACACT 5'
1288Medicago truncatulaTGGAGAAGCAGGGCACGTGCAalignmentplotGSM643817_GDN-4gi|9675757|gb|AL376005.1|AL376005 MtBB20F03R1 MtBB Medicago truncatula cDNA clone MtBB20F03 T7, mRNA sequence21770.03613.5
5'     TGGAGAAGCAGGGCACGTGCA        3'
|o||||| |||||||||| |
3' CGAATCTTCTTCTTCCCGTGCAC-TGTGGTAG 5'
1289Medicago truncatulaAGCTTGGGCTAGGAATTTGTGCalignmentplotGSM643817_GDN-4gi|260519199|gb|GT137748.1|GT137748 METC218TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence0280.01183.63.5
5'     AGCTTGGGCTAGGAATTTGTGC       3'
|||||||||| |o||||o o||
3' AGGATCGAACCCGACCTTTAAGGGCGGTGAAA 5'
1290Medicago truncatulaTGAAGCTGCCAGCATGATCTAalignmentplotGSM643817_GDN-4gi|6708753|gb|AW299076.1|AW299076 EST305750 KV2 Medicago truncatula cDNA clone KV2-12A12, mRNA sequence0228052.53
5'     TGAAGCTGCCAGCATGATCTA        3'
||||||||||| |||||||
3' TTTATGTTCGACGGTCGGACTAGATTCTCCTA 5'
1291Medicago truncatulaAGAGTTAATTAAGTTTTTAGTalignmentplotGSM643817_GDN-4gi|9668011|gb|AL368258.1|AL368258 MtBA23C03R1 MtBA Medicago truncatula cDNA clone MtBA23C03 T7, mRNA sequence21710.03212.5
5'     AGAGTTAATTAAGTTTTTAGT        3'
|| ||||||||||oo|o||||
3' TTTGTCACAATTAATTCGGAGATCACGGTTTA 5'
1292Medicago truncatulaTTTTGGGACGGAGGGAGTATAalignmentplotGSM643817_GDN-4gi|157980539|gb|EX528811.1|EX528811 MTGland_A046_2007-06-01/MTGlandA046__D01_005_1 Medicago truncatula A17 glandular trichome Me2521020.52
5'     TTTTGGGACGGAGGGAGTATA        3'
|||||||||||||||||| |
3' ATGTTAAACCCTGCCTCCCTCAT-TCTCCCCA 5'
1293Medicago truncatulaATTTGGGACGGAGGGAGTATTalignmentplotGSM643817_GDN-4gi|157980539|gb|EX528811.1|EX528811 MTGland_A046_2007-06-01/MTGlandA046__D01_005_1 Medicago truncatula A17 glandular trichome Me2521020.52
5'     ATTTGGGACGGAGGGAGTATT        3'
|||||||||||||||||||
3' ATGTTAAACCCTGCCTCCCTCATTCTCCCCAC 5'
1294Medicago truncatulaTGCCAAAGGAGATTTGCCCTGalignmentplotGSM643817_GDN-4gi|260520380|gb|GT136216.1|GT136216 METBL11TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence05210882
5'     TGCCAAAGGAGATTTGCCCTG        3'
|||||||||||||||| || |
3' GAAAACGGTTTCCTCTAAACAGGTCATGTGTC 5'
1295Medicago truncatulaCCTCGTTCCATACATCATCTAGalignmentplotGSM643817_GDN-4gi|57503415|gb|CX534696.1|CX534696 s13dNF49D10MJ090_331089 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago trunc02220552
5'     CCTCGTTCCATACATCATCTAG       3'
|| |o|||||o|||||||||||
3' GTAAGG-GTAAGGTGTGTAGTAGATCTTGTTC 5'
1296Medicago truncatulaTTCCACAGCTTTCTTGAACTGalignmentplotGSM643817_GDN-4gi|20308276|gb|BQ165653.1|BQ165653 EST611522 KVKC Medicago truncatula cDNA clone pKVKC-10G6, mRNA sequence06460.01151.363643.5
5'     TTCCACAGCTTTCTTGAACTG        3'
| ||||||||||||| | |o|
3' ATCGACGGTGTCGAAAGAAGT-GGCCTCGAAA 5'
1297Medicago truncatulaTGCCTGGCTCCCTGTATGCCAalignmentplotGSM643817_GDN-4gi|148765690|gb|ES612384.1|ES612384 MTGland_A019_2007-05-07/MTGlandA019_F01_003_1 Medicago truncatula A17 glandular trichome Med0344049490.5
5'     TGCCTGGCTCCCTGTATGCCA        3'
||||||||||||||o||||||
3' TCGTACGGACCGAGGGACGTACGGTCGTCCTC 5'
1298Medicago truncatulaTTCCACAGCTTTCTTGAACTGalignmentplotGSM643817_GDN-4gi|161109516|gb|EY476340.1|EY476340 METAQ25TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence05500.0122113
5'    TTCCACA-GCTTTCTTGAACTG        3'
||||||| |||||||||| | |
3' TTCAAGGTGTCCGAAAGAACTCGCCAAAGATG 5'
1299Medicago truncatulaTTCCACAGCTTTCTTGAACTTalignmentplotGSM643817_GDN-4gi|10704748|gb|BF004473.1|BF004473 EST432971 KV1 Medicago truncatula cDNA clone pKV1-17B18, mRNA sequence03580.01124312433
5'    TTCCACA-GCTTTCTTGAACTT        3'
||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCCAAAAAAG 5'
1300Medicago truncatulaTTTTGGGACGGAGGGAGTATAalignmentplotGSM643817_GDN-4gi|148765165|gb|ES611859.1|ES611859 MTGland_A012__2007-05-05/MTGlandA012__H01_001_1 Medicago truncatula A17 glandular trichome M0316020.6666672
5'     TTTTGGGACGGAGGGAGTATA        3'
|||||||||||||||||| |
3' ATGTTAAACCCTGCCTCCCTCAT-TATGTATT 5'
1301Medicago truncatulaATTTGGGACGGAGGGAGTATTalignmentplotGSM643817_GDN-4gi|148765165|gb|ES611859.1|ES611859 MTGland_A012__2007-05-05/MTGlandA012__H01_001_1 Medicago truncatula A17 glandular trichome M0316020.6666671
5'     ATTTGGGACGGAGGGAGTATT        3'
||||||||||||||||||| |
3' ATGTTAAACCCTGCCTCCCTCATTATGTATTC 5'
1302Medicago truncatulaTCAAAGGGAGGTGTGGAGTAGalignmentplotGSM643817_GDN-4gi|13595775|gb|BG580711.1|BG580711 EST482438 GVN Medicago truncatula cDNA clone pGVN-61G24 5' end, mRNA sequence22230.0440.2105263.5
5'     TCAAAGGGAGGTGTGGAGTAG        3'
|||||||||||| o|||||
3' ACACTGTTTCCCTCCACTTCTCATAGAACTCT 5'
1303Medicago truncatulaCCTCGTTCCATACATCATCTAGalignmentplotGSM643817_GDN-4gi|57503277|gb|CX534558.1|CX534558 s13dNF47H03MJ032_330823 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago trunc0491030303
5'     CCTCGTTCCATACATCATCTAG       3'
| ||o|||||||| |||||||o
3' GCTAGTAGTAAGGTATGCAGTAGATTGTGCTG 5'
1304Medicago truncatulaTTACCTATTCCACCAATTCCATalignmentplotGSM643817_GDN-4gi|57501174|gb|CX532455.1|CX532455 s13dNF66A11MJ081_271200 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago trunc11010423
5'     TTACCTATTCCACCAATTCCAT       3'
|| |||||||| || |||||||
3' ACTAAACGGATAAGGCGGCTAAGGTATTTACG 5'
1305Medicago truncatulaTCAATGTGTTGTGTTTGTCTCalignmentplotGSM643817_GDN-4gi|11958274|gb|AW695035.2|AW695035 NF082G11ST1F1087 Developing stem Medicago truncatula cDNA clone NF082G11ST 5', mRNA sequence0440.02333
5'     TCAATGTGTTGTGTTTGTCTC        3'
|| |||| ||||||||||| |
3' GCAAAGATACA-AACACAAACAGTGACACTCA 5'
1306Medicago truncatulaTCCTCGGTACCTATGTTGATalignmentplotGSM643817_GDN-4gi|7563856|gb|AW689120.1|AW689120 NF015F02ST1F1000 Developing stem Medicago truncatula cDNA clone NF015F02ST 5', mRNA sequence02370.02121.714293.5
5'     TCCTCGGTACCTATGTTGAT         3'
||| |o|||||o ||||o||
3' TTAAAGGTGTCATGGGAACAATTAGAAACACC 5'
1307Medicago truncatulaTTGAAGGGGCAGGGAGAGGAGalignmentplotGSM643817_GDN-4gi|260519406|gb|GT137955.1|GT137955 METC440TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence05430.0240.4583333.5
5'     TTGAAGGGGCAGGGAGAGGAG        3'
||||| |o|||||o|o||| |
3' ATTCAACTTGCTCGTCCTTTTCCACGTCCCTT 5'
1308Medicago truncatulaTTAATCTAGGAAATTACACTCGalignmentplotGSM643817_GDN-4gi|260520915|gb|GT136751.1|GT136751 METBR04TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence03620293146.51.5
5'     TTAATCTAGGAAATTACACTCG       3'
|||||| ||||||||||||o||
3' TATGAATTAGTTCCTTTAATGTGGGCTACTTT 5'
1309Medicago truncatulaTCGGACCAGGCTTCATTCCalignmentplotGSM643817_GDN-4gi|11935327|gb|BE325087.2|BE325087 NF120A06ST1F1040 Developing stem Medicago truncatula cDNA clone NF120A06ST 5', mRNA sequence24550661.5
5'     TCGGACCAGGCTT-CATTCC         3'
o|||||||||||| ||||||
3' CTTAGGCCTGGTCCGAAAGTAAGGTCCGTAAA 5'
1310Medicago truncatulaTTAATCTAGGAAATTACACTCGalignmentplotGSM643817_GDN-4gi|209563806|gb|GE345116.1|GE345116 MEUAK59TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence237404120.51.5
5'     TTAATCTAGGAAATTACACTCG       3'
|||||| ||||||||||||o||
3' TATTAATTAGTTCCTTTAATGTGGGCTACCTT 5'
1311Medicago truncatulaTAAGACATCAGCTATAAGCTAalignmentplotGSM643817_GDN-4gi|7718765|gb|AW774848.1|AW774848 EST333999 KV3 Medicago truncatula cDNA clone pKV3-24I21, mRNA sequence12490.01223.5
5'     TAAGACATCA-GCTATAAGCTA       3'
o|| |||||| ||| |||||||
3' TACCGTTATGTAGTACGAAATTCGATACTTTA 5'
1312Medicago truncatulaTTCCACAGCTTTCTTGAACTTalignmentplotGSM643817_GDN-4gi|151389884|gb|EV259762.1|EV259762 MTYDZ84TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence05350.0422113
5'    TTCCACA-GCTTTCTTGAACTT        3'
||||||| ||||||||||||
3' TTCAAGGTGTCCGAAAGAACTTGCCAAAGATG 5'
1313Medicago truncatulaTTACCGATTCCACCCATTCCTAalignmentplotGSM643817_GDN-4gi|83665171|gb|DW015579.1|DW015579 EST1224540 MTY Medicago truncatula cDNA clone MTYA712, mRNA sequence0411096484
5'     TTACCGATTCCACCCATTCCTA       3'
o| ||o||||||||||o| |o|
3' AATTGA-GGTTAAGGTGGGTGAAGGTTGTGAC 5'
1314Medicago truncatulaCGTCTTCATCATCATCACATTalignmentplotGSM643817_GDN-4gi|20284133|gb|BQ147074.1|BQ147074 NF032B03FL1F1029 Developing flower Medicago truncatula cDNA clone NF032B03FL 5', mRNA sequenc03090.03110.7162163
5'     CGTCTTCATCATCATCA-CATT       3'
|o|| |||||||||||| |||o
3' AGAAGTAGTAGTAGTAGTAGTAGTAGTAGTAG 5'
1315Medicago truncatulaTTGGATTGAAGGGAGCTCTalignmentplotGSM643817_GDN-4gi|260520362|gb|GT136198.1|GT136198 METBK88TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence06940.01102.53
5'     TTGGATTGAAGGGAGCTCT          3'
|||||o||||||| |o||
3' ACTTAACCTGACTTCCCAGGGGATAATATTGG 5'
1316Medicago truncatulaTTGGACTGAAGGGAGCTCCCalignmentplotGSM643817_GDN-4gi|260520362|gb|GT136198.1|GT136198 METBK88TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence06940.04102.54
5'     TTGGACTGAAGGGAGCTCCC         3'
||||||||||||| | ||
3' ACTTAACCTGACTTCCCAGG-GGATAATATTG 5'
1317Medicago truncatulaTTACCTATTCCACCAATTCCATalignmentplotGSM643817_GDN-4gi|209561029|gb|GE343715.1|GE343715 MEUA443TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence035701351.731933
5'     TTACCTATTCCACCAATTCCAT       3'
oo||||| |||||||||o|||o
3' TAGTGGTGGATCAGGTGGTTAGGGTGGACTAG 5'
1318Medicago truncatulaTGCCTGGCTCCCTGTATGCCAalignmentplotGSM643817_GDN-4gi|10706464|gb|BF006117.1|BF006117 EST434687 DSLC Medicago truncatula cDNA clone pDSLC-39L12, mRNA sequence02270662
5'     TGCCTGGCTCCCTGTATGCCA        3'
|||||||||||||| |||||
3' TCGTACGGACCGAGGGACTTACGGACGCCGTC 5'
1319Medicago truncatulaATTTGGGACGGAGGGAGTATTalignmentplotGSM643817_GDN-4gi|57487645|gb|CX519119.1|CX519119 s13dNF49D08VI074_439458 Virus-Infected Leaves Medicago truncatula cDNA, mRNA sequence2930.05213.5
5'     ATTTGGGACGGAGGGAGTATT        3'
||||| | ||||o|||oo|||
3' GTCTTAAACACAGCCTTCCTTGTAATAATGGA 5'
1320Medicago truncatulaAGAATCCTGATGATGCTGCAGalignmentplotGSM643817_GDN-4gi|10704197|gb|BF003922.1|BF003922 EST432420 KV1 Medicago truncatula cDNA clone pKV1-14G3, mRNA sequence0480012121
5'     AGAATCCTGATGATGCTGCAG        3'
||||||||||||||||||| |
3' TACCTCTTAGGACTACTACGACGACGACGACG 5'
1321Medicago truncatulaTTAATCTAGGAAATTACACTCGalignmentplotGSM643817_GDN-4gi|8529017|gb|BE124460.1|BE124460 EST393495 GVN Medicago truncatula cDNA clone pGVN-59P9, mRNA sequence0109027273.5
5'     TTAATCTAGGAAATTACACTCG       3'
|||||| |||||||o||| | |
3' ACTAAATTAGTTCCTTTAGTGTCAACCATTAT 5'
1322Medicago truncatulaTTACCGATTCCACCCATTCCTAalignmentplotGSM643817_GDN-4gi|11936378|gb|AW693660.2|AW693660 NF066G08ST1F1000 Developing stem Medicago truncatula cDNA clone NF066G08ST 5', mRNA sequence021002352352
5'     TTACCGATTCCACCCATTCCTA       3'
||||||| |||||||||o||o|
3' ACAAAATGGCTTAGGTGGGTAGGGGTTCCTAC 5'
1323Medicago truncatulaTTACCTATTCCACCAATTCCATalignmentplotGSM643817_GDN-4gi|14866334|gb|BI264259.1|BI264259 NF110C09PL1F1070 Phosphate starved leaf Medicago truncatula cDNA clone NF110C09PL 5', mRNA se06020332.5
5'     TTACCTATTCCACCAATTCCAT       3'
|| ||||||||||||||o|| |
3' ACAAAAGGGATAAGGTGGTTAGGGCATCTAGG 5'
1324Medicago truncatulaCCTCTTCCTCTTCCTCTTCCACalignmentplotGSM643817_GDN-4gi|9195933|gb|BE322156.1|BE322156 NF010F11IN1F1092 Insect herbivory Medicago truncatula cDNA clone NF010F11IN 5', mRNA sequence22190.01221.5
5'     CCTCTTCCTCTTCCTCTTCCAC       3'
| ||||||||||||||o|||||
3' AGTAGAAGAAGGAGAAGGAGGAGGTGGAGTGA 5'
1325Medicago truncatulaTTAATCTAGGAAAATACGGTGalignmentplotGSM643817_GDN-4gi|20274358|gb|BQ138232.1|BQ138232 NF001B02PH1F1015 Phoma-infected Medicago truncatula cDNA clone NF001B02PH 5', mRNA sequence01700.0110103.5
5'     TTAATCTAGGAAAATACGGTG        3'
|||||| |||||| o|||||
3' GATTAATTAGTTCCTTTAGTGCCAACTTGTGT 5'
1326Medicago truncatulaTCCAAAGGGATCGCATTGTTTalignmentplotGSM643817_GDN-4gi|157983377|gb|EX531649.1|EX531649 MTGland_B026_2007-07-02/MTGlandB026_E12_044_1 Medicago truncatula A17 glandular trichome Med238030.3750
5'     TCCAAAGGGATCGCATTGTTT        3'
|||||||||||||||||||||
3' CTGTAGGTTTCCCTAGCGTAACAAAGTATGAA 5'
1327Medicago truncatulaTTTGGGATCAGAAATTAGAGAalignmentplotGSM643817_GDN-4gi|9669808|gb|AL370055.1|AL370055 MtBA35C02R1 MtBA Medicago truncatula cDNA clone MtBA35C02 T7, mRNA sequence1270.03424
5'     TTTGGGATCAGAAATTAGAGA        3'
|||||||||| ||| o|o| |
3' ATTAAAACCCTAGTATTTCGTTT-TGAATAAA 5'
1328Medicago truncatulaGAGCCAAGGATGACTTGCCGGalignmentplotGSM643817_GDN-4gi|13784051|gb|BG648939.1|BG648939 EST510558 HOGA Medicago truncatula cDNA clone pHOGA-24G6 5' end, mRNA sequence0518066662
5'     GAGCCAAGGATGACTTGCCGG        3'
o|||||||o|||| |||||||
3' TGTTTTCGGTTCTTACTAAACGGCCGTATATA 5'
1329Medicago truncatulaATGTGACCTTGTATATGATCalignmentplotGSM643817_GDN-4gi|6465779|gb|AW191278.1|AW191278 T113573e KV2 Medicago truncatula cDNA clone pKV2-2J13, mRNA sequence22290.02222.5
5'     ATGTGACCTTGTATATGATC         3'
|o|||| ||| |||||||||
3' TGACTGCACTTGAA-ATATACTAGGTCGATGA 5'
1330Medicago truncatulaTGATACACTAGCACGGATCACalignmentplotGSM643817_GDN-4gi|20273861|gb|BQ137735.1|BQ137735 NF004G08NR1F1000 Nodulated root Medicago truncatula cDNA clone NF004G08NR 5', mRNA sequence06730.028118114
5'     TGATACACTAGCACGGATCAC        3'
|||| |||||| |||||||
3' TAAAACTACGTGATCTGCCCTAGTGTTCATTG 5'
1331Medicago truncatulaTCTTCTTCTTCTTCTTGCACCalignmentplotGSM643817_GDN-4gi|260520513|gb|GT136349.1|GT136349 METBM56TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence2560.05150.02155692
5'     TCTTCTTCTTCTTCTTGCACC        3'
|||||||||||||||| || |
3' AAGAAGAAGAAGAAGAAGAA-GTCGTTTCTTG 5'
1332Medicago truncatulaTCCTCGGTACCTATGTTGATalignmentplotGSM643817_GDN-4gi|209563361|gb|GE343546.1|GE343546 MEUA250TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence06130.0480.2285714
5'     TCCTCGGTACCTATGTTGAT         3'
||| |o|||||o ||o|o||
3' CTAAAGGTGTCATGGGAACGATTAGAACCAAC 5'
1333Medicago truncatulaCCTGTAATCCCAGCACTTTGGalignmentplotGSM643817_GDN-4gi|6708718|gb|AW299041.1|AW299041 EST305715 KV2 Medicago truncatula cDNA clone KV2-11I14, mRNA sequence15950.0140.6666674
5'     CCTGTAATCCCAGCACTTTGG        3'
||| |||| ||||||||| |
3' ACCAGGAAATTA-GGTCGTGAACACCGGAACA 5'
1334Medicago truncatulaAAAGGTGCCAATTATGAGTGTalignmentplotGSM643817_GDN-4gi|9681173|gb|AL381422.1|AL381422 MtBC019H11R1 MtBC Medicago truncatula cDNA clone MtBC019H1 T7, mRNA sequence03320.02844
5'     AAAGGTGCCAATTATGAGTGT        3'
||||||o||| ||| o ||||
3' CTTGTTTCCATGGT-AATTTACACATTTAAGT 5'
1335Medicago truncatulaTAATCTGCATCCTGAGGTTTAalignmentplotGSM643817_GDN-4gi|13779607|gb|BG644495.1|BG644495 EST506114 KV3 Medicago truncatula cDNA clone pKV3-37O12 5' end, mRNA sequence0502010102.5
5'     TAATCTGCATCCTGAGGTTTA        3'
|||||||||||||| ||||o
3' TTGTATTAGACGTAGGACGCCAAGAACTGGAC 5'
1336Medicago truncatulaTGATACACTAGCACGGATCACalignmentplotGSM643817_GDN-4gi|57564439|gb|CX538597.1|CX538597 s13dNF81C12GS086_460446 Germinating Seed Medicago truncatula cDNA, mRNA sequence0990.02140.73.5
5'     TGATACACTAGCACGGATCAC        3'
||||||||o||| |o| o|||
3' TGGAACTATGTGGTCG-GTCGGGTGTACAGCA 5'
1337Medicago truncatulaTGGAGAAGCAGGGCACATGCTalignmentplotGSM643817_GDN-4gi|7674738|gb|AW126098.2|AW126098 N100295e rootphos(-) Medicago truncatula cDNA clone MHRP-4C5, mRNA sequence229050.2380952
5'     TGGAGAAGCAGGGCACATGCT        3'
|o||||| ||o||||||||||
3' CAAAATCTCTT-GTTCCGTGTACGACTGTTGT 5'
1338Medicago truncatulaAGATTGAGACTTGTATGGCTTalignmentplotGSM643817_GDN-4gi|13595643|gb|BG580579.1|BG580579 EST482306 GVN Medicago truncatula cDNA clone pGVN-57P18 5' end, mRNA sequence05220.02224
5'     AGATTGAGACTTGTATGGCTT        3'
||| ||| |||| ||| ||||
3' AAAGTCTTACT-TGAAAATAACGAAATTGTAA 5'
1339Medicago truncatulaTTCCACAGCTTTCTTGAACTGalignmentplotGSM643817_GDN-4gi|27523320|gb|CA990426.1|CA990426 EST643934 GESD Medicago truncatula cDNA clone GESD-28L1, mRNA sequence05370.05151.363643.5
5'     TTCCACAGCTTTCTTGAACTG        3'
| ||||||||||||| | |o|
3' ATCGACGGTGTCGAAAGAAGT-GGCCTCGAAA 5'
1340Medicago truncatulaTTTTGGGACGGAGGGAGTATAalignmentplotGSM643817_GDN-4gi|157985004|gb|EX533276.1|EX533276 MTGland_B047_2007-06-23/MtGland_B047_E08_028_1 Medicago truncatula A17 glandular trichome Me2387020.52
5'     TTTTGGGACGGAGGGAGTATA        3'
|||||||||||||||||||
3' ATGTTAAACCCTGCCTCCCTCATAAAAGAATT 5'
1341Medicago truncatulaTTGCTTGGTGCTGGTCGGGAAalignmentplotGSM643817_GDN-4gi|11960861|gb|BE315730.2|BE315730 NF025F05LF1F1043 Developing leaf Medicago truncatula cDNA clone NF025F05LF 5', mRNA sequence031204113.66674
5'     TTGCTTGGTGCTGGTCGGGAA        3'
||||||||||| | |||||
3' CCCCAACGAACCACGTCGAGCCCCATACTCCC 5'
1342Medicago truncatulaTTCCACAGCTTTCTTGAACTTalignmentplotGSM643817_GDN-4gi|13372800|gb|BG454006.1|BG454006 NF104A04LF1F1022 Developing leaf Medicago truncatula cDNA clone NF104A04LF 5', mRNA sequence03520.01663
5'    TTCCACA-GCTTTCTTGAACTT        3'
||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCCAAAAAGG 5'
1343Medicago truncatulaCCTCTTCCTCTTCCTCTTCCACalignmentplotGSM643817_GDN-4gi|57497759|gb|CX529040.1|CX529040 s13dNF40B06MJ046_244140 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago trunc0380.0530.2142864
5'     CCTCTTCCTCTTCCTCTTCCAC       3'
| ||||| |||||||||| | |
3' AGAAGAAGAAGAAGAAGGAGAACGAGAAAGCT 5'
1344Medicago truncatulaTTCCACAGCTTTCTTGAACTTalignmentplotGSM643817_GDN-4gi|55446482|gb|AJ847301.1|AJ847301 AJ847301 MtSTW Medicago truncatula cDNA clone MtTW07P18N1, mRNA sequence03702142143
5'    TTCCACA-GCTTTCTTGAACTT        3'
||||||| ||||||||||||
3' CGGAAGGTGTCCGAAAGAACTTGCTACCGATG 5'
1345Medicago truncatulaGGAATCTTGATGATTCTGCACalignmentplotGSM643817_GDN-4gi|9056759|gb|BE240575.1|BE240575 EST404624 MHRP- Medicago truncatula cDNA clone pMHRP-45L2, mRNA sequence02450266.52.5
5'     GGAATCTTGATGATTCTGCAC        3'
||||||o||||||| |||||
3' CCACCCTTAGGACTACTACGACGTCGTCGTCA 5'
1346Medicago truncatulaTGGAGAAGCAGGGCACGTGCAalignmentplotGSM643817_GDN-4gi|89245334|gb|DY617121.1|DY617121 AC2814 NOLLY Medicago truncatula cDNA 5', mRNA sequence11650333
5'     TGGAGAAGCAGGGCACGTGCA        3'
|||||||||| oo||| ||||
3' CTTAACCTCTTCGTGTTGTGAACGTCGTTCTC 5'
1347Medicago truncatulaTTGACAGAAGATAGAGGGCACalignmentplotGSM643817_GDN-4gi|83668422|gb|DW018830.1|DW018830 EST1227791 MTY Medicago truncatula cDNA clone MTYBB44, mRNA sequence06100441.5
5'     TTGACAGAAGATAGAGGGCAC        3'
||||||||||||||||o|||
3' TTCTAACTGTCTTCTATCTCTCGTAACCAGAT 5'
1348Medicago truncatulaTGAGCCAGGATGGCTTGCCGGalignmentplotGSM643817_GDN-4gi|7206473|gb|AW561047.1|AW561047 EST316095 DSIR Medicago truncatula cDNA clone pDSIR-31M23, mRNA sequence0605048483.5
5'    TGAGCC-AGGATGGCTTGCCGG        3'
|||||| ||||||| ||||| o
3' ATTACTCGGTTCCTACCTAACGGATTCTGGTT 5'
1349Medicago truncatulaTTACCGATTCCACCCATTCCTAalignmentplotGSM643817_GDN-4gi|14879467|gb|BI271199.1|BI271199 NF050F01FL1F1015 Developing flower Medicago truncatula cDNA clone NF050F01FL 5', mRNA sequenc0990108710872
5'     TTACCGATTCCACCCATTCCTA       3'
||||||| ||||||||| ||||
3' ACAAAATGGCTTAGGTGGGTACGGATTCCTAC 5'
1350Medicago truncatulaTGAGCCAGGATGGCTTGCCGGalignmentplotGSM643817_GDN-4gi|7206473|gb|AW561047.1|AW561047 EST316095 DSIR Medicago truncatula cDNA clone pDSIR-31M23, mRNA sequence2633035353
5'     TGAGCCAGGATG-GCTTGCCGG       3'
|||||||||||| | |||||oo
3' CATTACTCGGTCCTACTCAAACGGTTTCATTA 5'
1351Physcomitrella patensTGCACTGCCTCTTCCCTGGCTalignmentplotGSM410805-5251PP1S40_48V6.6 cdna:known scaffold:ASM242v1:DS544929.1:397418:401180:-1 gene:PP1S40_48V6 transcript:PP1S40_48V6.601991050784.53
5'     TGCACTGCCTCTTCCCTGGCT        3'
|||| ||||||||||| | ||
3' GTGTACGTAACGGAGAAGGGTC-GAGTGTGGC 5'
1352Physcomitrella patensTGATGGTGATGCGCTTGTATCalignmentplotGSM410805-5251PP1S4_128V6.1 cdna:known scaffold:ASM242v1:DS544893.1:955479:955841:-1 gene:PP1S4_128V6 transcript:PP1S4_128V6.10540332
5'     TGATGGTGATGCGCTTGTA-TC       3'
|||||||||||| |||||| ||
3' AGGAACTACCACTACGAGAACATCAGCGTCTC 5'
1353Physcomitrella patensTCTTAGATCTACAATGCCTCTalignmentplotGSM410805-5251PP1S70_252V6.1 cdna:known scaffold:ASM242v1:DS544959.1:1546625:1548213:-1 gene:PP1S70_252V6 transcript:PP1S70_252V6.129280.01222.5
5'     TCTTAGATCTACAATGCCTCT        3'
| |o||||||||||| |||||
3' TGTGATAGTCTAGATGTTAGGGAGAGACCGTG 5'
1354Physcomitrella patensTATGTTGCAGATTCTTCATTTalignmentplotGSM410805-5251PP1S97_176V6.1 cdna:known scaffold:ASM242v1:DS544986.1:937439:940190:1 gene:PP1S97_176V6 transcript:PP1S97_176V6.10139601591594
5'     TATGTTGCAGATTCTTCATTT        3'
||| ||||||||||||| |
3' TATGCTACTACGTCTAAGAAGTTCACGCGCTA 5'
1355Physcomitrella patensTTCTTGCACTCCTCCATCTCTalignmentplotGSM410805-5251PP1S188_39V6.1 cdna:known scaffold:ASM242v1:DS545077.1:420675:421969:-1 gene:PP1S188_39V6 transcript:PP1S188_39V6.1058801096411096411.5
5'     TTCTTGCACTCCTCCATCTCT        3'
|||||||||||||| |||||o
3' CCAGAAGAACGTGAGGAGTTAGAGGGAGTCCT 5'
1356Physcomitrella patensTAGGTGCGTTTCCACCAAAGalignmentplotGSM410805-5251PP1S7_389V6.2 cdna:known scaffold:ASM242v1:DS544896.1:2336121:2340324:-1 gene:PP1S7_389V6 transcript:PP1S7_389V6.221335052.51
5'     TAGGTGCGTTTCCACCAAAG         3'
|||||||||||| |||||||
3' GTTCATCCACGCAAAG-TGGTTTCCCAGATAG 5'
1357Physcomitrella patensACACTCTCTCCATTTCTCTGCalignmentplotGSM410805-5251PP1S159_13V6.1 cdna:known scaffold:ASM242v1:DS545048.1:86215:89324:1 gene:PP1S159_13V6 transcript:PP1S159_13V6.1024720.014044043.5
5'     ACACTCTCTCCATTTCTCTGC        3'
||||||||||||||||| o
3' GTTAAGTGAGAGAGGTAAAGAGTTTGACTTAC 5'
1358Physcomitrella patensTCATCATCATCATCATCCTCAalignmentplotGSM410805-5251PP1S7_389V6.2 cdna:known scaffold:ASM242v1:DS544896.1:2336121:2340324:-1 gene:PP1S7_389V6 transcript:PP1S7_389V6.227900.04210
5'     TCATCATCATCATCATCCTCA        3'
|||||||||||||||||||||
3' TAGTAGTAGTAGTAGTAGTAGGAGTAGGTACA 5'
1359Physcomitrella patensTCAATGCTCTCTGGAGCTTCTalignmentplotGSM410805-5251PP1S18_318V6.1 cdna:known scaffold:ASM242v1:DS544907.1:2489598:2492020:-1 gene:PP1S18_318V6 transcript:PP1S18_318V6.1018020.01443.5
5'     TCAATGCTCTCTGGAGCTTCT        3'
|||||||||||||o|| | |
3' AGAGAGTTACGAGAGACTTC-ATTAGGTTGGT 5'
1360Physcomitrella patensTGACAGAAGAGAGTGAGCACalignmentplotGSM410805-5251PP1S1_134V6.1 cdna:novel scaffold:ASM242v1:DS544890.1:813596:814136:-1 gene:PP1S1_134V6 transcript:PP1S1_134V6.104001041041
5'     TGACAGAAGAGAGTGAGCAC         3'
|||||||||||||||||||
3' GTGAACTGTCTTCTCTCACTCGTAGATGTTAA 5'
1361Physcomitrella patensCGTCTTCCTCTTCCTCTTCCTalignmentplotGSM410805-5251PP1S44_263V6.3 cdna:known scaffold:ASM242v1:DS544933.1:1674521:1678736:-1 gene:PP1S44_263V6 transcript:PP1S44_263V6.31320.05224
5'     CGTCTTCCTCTTCCTCTTCCT        3'
|||| |||||o|| | o||||
3' GGTAGCAGTAGGAGGAGCACGAGGAGGAGGAG 5'
1362Physcomitrella patensTAAACCCTCTCTCTATTCCTGalignmentplotGSM410805-5251PP1S14_433V6.1 cdna:known scaffold:ASM242v1:DS544903.1:2747456:2749000:-1 gene:PP1S14_433V6 transcript:PP1S14_433V6.105360.0483834
5'     TAAACCCTCTCTCTATTCCTG        3'
||||| |||| ||| ||| ||
3' TACTATTTGTGAGATAGAGAAGAACCTGTGAG 5'
1363Physcomitrella patensCTTGGACTGAAGGGAGCTCCalignmentplotGSM410805-5251PP1S332_22V6.1 cdna:known scaffold:ASM242v1:DS545220.1:67340:71481:1 gene:PP1S332_22V6 transcript:PP1S332_22V6.119370.02224
5'     CTTGGACTGAAGGGAGCTCC         3'
||| || |||||||| |||
3' GGGAGAAACTTACTTCCCT-GAGAAAGTCGGT 5'
1364Physcomitrella patensTTCTTGCACTCCTCCATCTCTalignmentplotGSM410805-5251PP1S545_4V6.1 cdna:known scaffold:ASM242v1:DS545413.1:16259:19444:1 gene:PP1S545_4V6 transcript:PP1S545_4V6.104490959095901.5
5'     TTCTTGCACTCCTCCATCTCT        3'
|||||||||||||| |||||o
3' CCAAAAGAACGTGAGGAGCTAGAGGGAGTTGT 5'
1365Physcomitrella patensTGCACTGCCTCTTCCCTGGCTalignmentplotGSM410805-5251PP1S77_277V6.1 cdna:known scaffold:ASM242v1:DS544966.1:1461739:1463836:-1 gene:PP1S77_277V6 transcript:PP1S77_277V6.122580552
5'     TGCACTGCCTCTTCCCTGGCT        3'
o|||||||||||||||||| o
3' GGTAGCGTGACGGAGAAGGGACCCGGTAAACA 5'
1366Physcomitrella patensAGAAGGGTCTACATCATAAACalignmentplotGSM410805-5251PP1S475_5V6.1 cdna:known scaffold:ASM242v1:DS545354.1:54886:57989:1 gene:PP1S475_5V6 transcript:PP1S475_5V6.1211420.0120.42
5'     AGAAGGGTCTACATCATAAAC        3'
||||||| |||||||| ||||
3' ATTATCTTCCCCGATGTAGTCTTTGCCTGAAA 5'
1367Physcomitrella patensTGGCCCATGCACAGTATCTACGalignmentplotGSM410805-5251PP1S77_113V6.1 cdna:novel scaffold:ASM242v1:DS544966.1:455191:464493:1 gene:PP1S77_113V6 transcript:PP1S77_113V6.1216830.01332.5
5'     TGGCCCATGCACAGTATCTACG       3'
||||||||||||||||o|o| o
3' GTAGACCGGGTACGTGTCATGGGTATAGATGA 5'
1368Physcomitrella patensTATGTTGCAGATTCTTCATTTalignmentplotGSM410805-5251PP1S262_39V6.1 cdna:novel scaffold:ASM242v1:DS545151.1:281843:284517:1 gene:PP1S262_39V6 transcript:PP1S262_39V6.101085021213.5
5'     TATGTTGCAGATTCTTCATTT        3'
||| |||||||||||||o |
3' TATGCTACTACGTCTAAGAAGTGCACGTGTTA 5'
1369Physcomitrella patensTGCATGACCGTCTCTTCCTGCalignmentplotGSM410805-5251PP1S20_21V6.1 cdna:known scaffold:ASM242v1:DS544909.1:98904:101764:1 gene:PP1S20_21V6 transcript:PP1S20_21V6.1019030793396.53.5
5'     TGCATGACCGTCTCTTCCTGC        3'
||||||| |||| |o|||||
3' CTGTTCGTACTGTCAGAAAGGGACGAAGTTCA 5'
1370Physcomitrella patensTTGCATGGAGTCTATGTCTGGAalignmentplotGSM410805-5251PP1S209_130V6.2 cdna:known scaffold:ASM242v1:DS545098.1:754290:759111:-1 gene:PP1S209_130V6 transcript:PP1S209_130V6.20100406602202
5'     TTGCATGGAGTCTATGTCTGGA       3'
||||||||||||||| |||||
3' TTCCAACGTACCTCAGATAAAGACCGAAGCTT 5'
1371Physcomitrella patensCGTCTTCCTCTTCCTCTTCCTalignmentplotGSM410805-5251PP1S163_90V6.1 cdna:known scaffold:ASM242v1:DS545052.1:680865:682493:1 gene:PP1S163_90V6 transcript:PP1S163_90V6.11400.0216162.5
5'     CGTCTTCCTCTTCCTCTTCCT        3'
||o|o|||||o|||||o|||o
3' CGCGGCGGGAGGAGGAGGAGGAGGGGAGGGGA 5'
1372Physcomitrella patensTTCTTGCACTCCTCCATCTCTalignmentplotGSM410805-5251PP1S545_4V6.1 cdna:known scaffold:ASM242v1:DS545413.1:16259:19444:1 gene:PP1S545_4V6 transcript:PP1S545_4V6.1211420.05356835682.5
5'     TTCTTGCACTCCTCCATCTCT        3'
|||||||| ||||| |||||o
3' CCAAAAGAACGTAAGGAGCTAGAGGGAGTTGT 5'
1373Physcomitrella patensTGATGGTGATGCGCTTGTATCalignmentplotGSM410805-5251PP1S4_301V6.1 cdna:known scaffold:ASM242v1:DS544893.1:2000250:2000630:-1 gene:PP1S4_301V6 transcript:PP1S4_301V6.102230361180.52
5'     TGATGGTGATGCGCTTGTA-TC       3'
||||||||||||| ||||| ||
3' AGTCACTACCACTACGCAAACATTAGGGTCTC 5'
1374Physcomitrella patensTTCTTGCACTCCTCCATCTCTalignmentplotGSM410805-5251PP1S459_10V6.1 cdna:known scaffold:ASM242v1:DS545339.1:132585:133622:1 gene:PP1S459_10V6 transcript:PP1S459_10V6.1056802575551511.5
5'     TTCTTGCACTCCTCCATCTCT        3'
|||||||||||||| |||||o
3' CCAGAAGAACGTGAGGAGTTAGAGGGAGTTCT 5'
1375Physcomitrella patensTTGGACTGAAGGGAGCTCCACalignmentplotGSM410805-5251PP1S135_34V6.1 cdna:known scaffold:ASM242v1:DS545024.1:271940:277802:1 gene:PP1S135_34V6 transcript:PP1S135_34V6.1235080.04223
5'     TTGGACTGAAGGGAGCTCCAC        3'
||||| |||| | ||||||||
3' ATTTAACCTCACTTGCATCGAGGTGTCTGCTG 5'
1376Physcomitrella patensTTATGATGTAGATTCTTCATalignmentplotGSM410805-5251PP1S105_81V6.1 cdna:known scaffold:ASM242v1:DS544994.1:546983:550759:1 gene:PP1S105_81V6 transcript:PP1S105_81V6.1017480.01663
5'     TTATGATGTAGATTCTTCAT         3'
o|||| ||o|||o||||||o
3' AAAAGATACAACGTCTGAGAAGTGGTCTAAGT 5'
1377Physcomitrella patensTGCCTGGCTCCTTGTATGCCAalignmentplotGSM410805-5251PP1S339_47V6.1 cdna:known scaffold:ASM242v1:DS545227.1:275729:278989:-1 gene:PP1S339_47V6 transcript:PP1S339_47V6.1214720212
5'     TGCCTGGCTCCTTGTATGCCA        3'
|||||||||||o||o|||||
3' TAGTACGGACCGAGGGACGTACGGACGTCTCC 5'
1378Physcomitrella patensGGTTCAAGTGAACAGGAAGAalignmentplotGSM410805-5251PP1S260_24V6.1 cdna:known scaffold:ASM242v1:DS545149.1:226444:230395:-1 gene:PP1S260_24V6 transcript:PP1S260_24V6.1221070.05222.5
5'     GGTTCAAGTGAACAGGAAGA         3'
oo||| ||||||||||||o|
3' CTATTTAAGGTCACTTGTCCTTTTGAGTTGAA 5'
1379Physcomitrella patensTCTCCCTCAAAGGCTTCCAalignmentplotGSM410805-5251PP1S248_7V6.1 cdna:known scaffold:ASM242v1:DS545137.1:70918:75836:-1 gene:PP1S248_7V6 transcript:PP1S248_7V6.103728020103
5'     TCTCCCTCAAAGGCTTCCA          3'
||||||||||||| |||
3' TCGTTGAGGGAGTTTCCGTAGGAAGTGAAGCC 5'
1380Physcomitrella patensTTCTTGCACTCCTCCATCTCTalignmentplotGSM410805-5251PP1S56_173V6.1 cdna:known scaffold:ASM242v1:DS544945.1:1196257:1197041:-1 gene:PP1S56_173V6 transcript:PP1S56_173V6.124520.04622.5
5'     TTCTTGCACTCCTCCATCTCT        3'
||||||||||||| |||||o
3' GCAGCAGAACGTGAGGAGCTAGAGGGCGTCGT 5'
1381Physcomitrella patensACACTCTCTCCATTTCTCTGCalignmentplotGSM410805-5251PP1S49_283V6.1 cdna:known scaffold:ASM242v1:DS544938.1:2081089:2083512:1 gene:PP1S49_283V6 transcript:PP1S49_283V6.125340.0520.6666672.5
5'     ACACTCTCTCCATTTCTCTGC        3'
|||||||||||o|||||| |
3' CACAAGTGAGAGAGGTGAAGAGA-GCGACAAT 5'
1382Physcomitrella patensTATGTTGCAGATTCTTCATTTalignmentplotGSM410805-5251PP1S105_81V6.1 cdna:known scaffold:ASM242v1:DS544994.1:546983:550759:1 gene:PP1S105_81V6 transcript:PP1S105_81V6.1217470.01552.5
5'     TATGTTGCAGATTCTTCATTT        3'
|||||||||||o||||||oo
3' AAAGATACAACGTCTGAGAAGTGGTCTAAGTG 5'
1383Physcomitrella patensTGACCACCTTGATTCCGGCCTalignmentplotGSM410805-5251PP1S233_24V6.1 cdna:known scaffold:ASM242v1:DS545122.1:105627:110001:-1 gene:PP1S233_24V6 transcript:PP1S233_24V6.1030880444
5'     TGACCACCTTGATTCCGGCCT        3'
||||||||||||| |o||o
3' CACCCCTGGTGGAACTAAAACTGGGTTGGAAG 5'
1384Physcomitrella patensTTGCATGGAGTCTATGTCTGGAalignmentplotGSM410805-5251PP1S55_304V6.2 cdna:known scaffold:ASM242v1:DS544944.1:1829258:1833155:-1 gene:PP1S55_304V6 transcript:PP1S55_304V6.201118054516136292.5
5'     TTGCATGGAGTCTATGTCTGGA       3'
||||||||||||||| ||||o
3' TACAAACGTACCTCAGATA-AGACTGACACTT 5'
1385Physcomitrella patensTCTCCCTCAAAGGCTTCCAalignmentplotGSM410805-5251PP1S112_154V6.1 cdna:known scaffold:ASM242v1:DS545001.1:733541:736966:1 gene:PP1S112_154V6 transcript:PP1S112_154V6.1218280.02222
5'     TCTCCCTCAAAGGCTTCCA          3'
|||||||||||||| |||
3' TGTTAGAGGGAGTTTCCGTAGGGGTAGGGCGT 5'
1386Physcomitrella patensTCTTTGGGTCTTTCTCTCCTGalignmentplotGSM410805-5251PP1S29_44V6.2 cdna:known scaffold:ASM242v1:DS544918.1:309069:313749:1 gene:PP1S29_44V6 transcript:PP1S29_44V6.2087207336.51
5'     TCTTTGGGTCTTTCTCTCCTG        3'
||||| |||||||||||||||
3' AAAGAGAAA-CCAGAAAGAGAGGACTGAAGGA 5'
1387Physcomitrella patensGAGCTCAGGAGGGATAGCGCCalignmentplotGSM410805-5251PP1S91_47V6.1 cdna:novel scaffold:ASM242v1:DS544980.1:275335:275565:-1 gene:PP1S91_47V6 transcript:PP1S91_47V6.10300663.5
5'     GAGCTCAGGAGGGATAGCGCC        3'
|||||||||o|| ||||| |
3' AGGAATCGAGTCCTTCCAATCGCAGTCATCGA 5'
1388Physcomitrella patensTGAGCCGCGCCAATATCACATalignmentplotGSM410805-5251PP1S205_1V6.1 cdna:known scaffold:ASM242v1:DS545094.1:3903:6350:-1 gene:PP1S205_1V6 transcript:PP1S205_1V6.101393019192
5'     TGAGCCGCGCCAATATCACAT        3'
||||||||||||||||| | |
3' ACTAACTCGGCGCGGTTATAGCGAAATCGGTA 5'
1389Physcomitrella patensTTGCATGGAGTCTATGTCTGGAalignmentplotGSM410805-5251PP1S118_209V6.2 cdna:known scaffold:ASM242v1:DS545007.1:1023491:1026970:-1 gene:PP1S118_209V6 transcript:PP1S118_209V6.201204042874214371.5
5'     TTGCATGGAGTCTATGTCTGGA       3'
||||||||||||||| ||||o|
3' TACAAACGTACCTCAGATA-AGACTTACACTA 5'
1390Physcomitrella patensTCTCCCTCAAAGGCTTCCAalignmentplotGSM410805-5251PP1S65_138V6.1 cdna:novel scaffold:ASM242v1:DS544954.1:780636:785346:-1 gene:PP1S65_138V6 transcript:PP1S65_138V6.119020.02333.5
5'     TCTCCCTCAAAGGCTTCCA          3'
||| |||||||o|| |||
3' ACCTAGA-GGAGTTTTCGCAGGGAGGCAGGGT 5'
1391Physcomitrella patensTTGAGCCGCGCCAATATCACAalignmentplotGSM410805-5251PP1S205_1V6.1 cdna:known scaffold:ASM242v1:DS545094.1:3903:6350:-1 gene:PP1S205_1V6 transcript:PP1S205_1V6.121394014142
5'     TTGAGCCGCGCCAATATCACA        3'
|||||||||||||||||| |
3' GACTAACTCGGCGCGGTTATAGCGAAATCGGT 5'
1392Physcomitrella patensTTCTTGCACTCCTCCATCTCTalignmentplotGSM410805-5251PP1S251_44V6.1 cdna:known scaffold:ASM242v1:DS545140.1:336620:337706:-1 gene:PP1S251_44V6 transcript:PP1S251_44V6.106490348934891.5
5'     TTCTTGCACTCCTCCATCTCT        3'
|||||||||||||| |||||o
3' CCAGAAGAACGTGAGGAGTTAGAGGGAGTTAT 5'
1393Physcomitrella patensTGACAGAAGAGAGTGAGCACalignmentplotGSM410805-5251PP1S194_57V6.1 cdna:known scaffold:ASM242v1:DS545083.1:256580:259970:-1 gene:PP1S194_57V6 transcript:PP1S194_57V6.1017410205102.51
5'     TGACAGAAGAGAGTGAGCAC         3'
||||||||||||| ||||||
3' CGCTACTGTCTTCTCTCTCTCGTGCCGGTCTC 5'
1394Physcomitrella patensTCTTGTCAATGTTTAGGGGCAalignmentplotGSM410805-5251PP1S117_107V6.2 cdna:novel scaffold:ASM242v1:DS545006.1:792008:795035:1 gene:PP1S117_107V6 transcript:PP1S117_107V6.2112930554
5'     TCTTGTCAATGTTTAGGGGCA        3'
||o||| |||||| ||| o||
3' CGGAAGGACACTTACAATTCCATGTGTCACTT 5'
1395Physcomitrella patensTCCCAAATGTATACAAAGCCalignmentplotGSM410805-5251PP1S54_155V6.1 cdna:known scaffold:ASM242v1:DS544943.1:981461:984271:1 gene:PP1S54_155V6 transcript:PP1S54_155V6.1210680.05212.5
5'     TCCCAAATGTATACAAAGCC         3'
|||| ||||||o||||| ||
3' ATCAAGGGATTACATGTGTTTAGGTGGATGTT 5'
1396Physcomitrella patensCTCACAGTCTGCACAGCTCTCalignmentplotGSM410805-5251PP1S838_1V6.1 cdna:novel scaffold:ASM242v1:DS545647.1:5153:7202:1 gene:PP1S838_1V6 transcript:PP1S838_1V6.116910.01214
5'     CTCACAGTCTGCACAGCTCTC        3'
|o| |||||||||| o ||||
3' CAGTGGGGGTCAGACGTGGTAAGAGGGTAACA 5'
1397Physcomitrella patensTCTGGTTGGATTGTAGGCCTCalignmentplotGSM410805-5251PP1S545_11V6.1 cdna:novel scaffold:ASM242v1:DS545413.1:53746:55931:-1 gene:PP1S545_11V6 transcript:PP1S545_11V6.1014930.02444
5'     TCTGGTTGGATTGTAGGCCTC        3'
|||||| ||||o|||| ||o
3' GTTCAGACCACCCTAGCATC-GGGCAAACTCA 5'
1398Physcomitrella patensTGATGGTGATGCGCTTGTATCalignmentplotGSM410805-5251PP1S77_81V6.1 cdna:novel scaffold:ASM242v1:DS544966.1:363971:365277:1 gene:PP1S77_81V6 transcript:PP1S77_81V6.125540551
5'     TGATGGTGATGCGCTTGT-ATC       3'
|||||||||||||||||| |||
3' AGGCACTACCACTACGCGAACAATAGCGTCGT 5'
1399Physcomitrella patensCATCTTGGAGTACTGCATCTTalignmentplotGSM410805-5251PP1S93_114V6.1 cdna:known scaffold:ASM242v1:DS544982.1:1044093:1046509:1 gene:PP1S93_114V6 transcript:PP1S93_114V6.10185003063063
5'     CATCTTGGAGTACTGCATCTT        3'
||||| |||||| |||||||
3' ACTACTAGAAGCTCATGCCGTAGAAAAAGTCT 5'
1400Physcomitrella patensTTGTAGAGTCATACACCTCTalignmentplotGSM410805-5251PP1S81_65V6.1 cdna:known scaffold:ASM242v1:DS544970.1:386049:390185:-1 gene:PP1S81_65V6 transcript:PP1S81_65V6.1027540.0254544
5'     TTGTAGAGTCATACACCTCT         3'
||||| ||||o| |||||o
3' GCAGTACATCCCAGTGTATGGAGGTATTTGAT 5'
1401Physcomitrella patensCTGAAGGAGTTCATTGGTACAalignmentplotGSM410805-5251PP1S38_312V6.1 cdna:known scaffold:ASM242v1:DS544927.1:1784879:1788350:-1 gene:PP1S38_312V6 transcript:PP1S38_312V6.1218890.02332.5
5'     CTGAAGGAGTTCATTGGTACA        3'
|||||||||||||o|| | ||
3' ATCAGACTTCCTCAAGTGACGAAGTACTTTTC 5'
1402Physcomitrella patensTTTCCTGCCTCTCACTAGCTTalignmentplotGSM410805-5251PP1S504_4V6.1 cdna:known scaffold:ASM242v1:DS545378.1:10247:12549:-1 gene:PP1S504_4V6 transcript:PP1S504_4V6.1116710.0247474
5'     TTTCCTGCCTCTCACTAGCTT        3'
||||||||||| ||||||
3' GACGTAAGGACGGAGATGGATCGACGTTACGA 5'
1403Physcomitrella patensCCACTCTCTCCGTTTCCCTTCCalignmentplotGSM410805-5251PP1S180_108V6.1 cdna:known scaffold:ASM242v1:DS545069.1:700836:702986:-1 gene:PP1S180_108V6 transcript:PP1S180_108V6.1112320.03224
5'     CCACTCTCTCCGTTTCCCTTCC       3'
|||o||||||o||||||| |
3' GGGTAGTGGGAGAGGTAAAGGGA-GACGTATG 5'
1404Physcomitrella patensTTCGTGCCAAGCTGTGTGCAalignmentplotGSM410805-5251PP1S90_9V6.1 cdna:known scaffold:ASM242v1:DS544979.1:38888:43079:-1 gene:PP1S90_9V6 transcript:PP1S90_9V6.102039073732
5'     TTCGTGCCAAGCTGTGTGCA         3'
|||||||| |||||||| ||
3' ATTTAAGCACGGGTCGACACAGGTGGTTCACT 5'
1405Physcomitrella patensTTATGATGTAGATTCTTCATalignmentplotGSM410805-5251PP1S4_166V6.1 cdna:known scaffold:ASM242v1:DS544893.1:1202417:1205054:1 gene:PP1S4_166V6 transcript:PP1S4_166V6.1013650134713471
5'     TTATGATGTAGATTCTTCAT         3'
||||||||o||||||||||o
3' GCTTAATACTACGTCTAAGAAGTGTCGATGCT 5'
1406Physcomitrella patensTGAATGATATTAACGTCCACGalignmentplotGSM410805-5251PP1S131_71V6.2 cdna:known scaffold:ASM242v1:DS545020.1:284420:287174:-1 gene:PP1S131_71V6 transcript:PP1S131_71V6.22911021854.52
5'     TGAATGATATTAACGTCCACG        3'
||||||||||| |||| ||||
3' TTCTACTTACTATAACTGCAAGTGCAACTCTC 5'
1407Physcomitrella patensTTGCGCGTGAATTTGAAGGCTalignmentplotGSM410805-5251PP1S65_226V6.3 cdna:known scaffold:ASM242v1:DS544954.1:1265650:1269721:1 gene:PP1S65_226V6 transcript:PP1S65_226V6.30153306761693
5'     TTGCGCGTGAATTTGAAGGCT        3'
|||||||o||||| o||| ||
3' TGTTAACGCGCGCTTAATTTTCAGAAATCTCC 5'
1408Physcomitrella patensTGCACTGCCTCTTCCCTGGCTalignmentplotGSM410805-5251PP1S227_44V6.2 cdna:known scaffold:ASM242v1:DS545116.1:306574:308835:1 gene:PP1S227_44V6 transcript:PP1S227_44V6.224560.05165.333332.5
5'     TGCACTGCCTCTTCCCTG-GCT       3'
|||||||| ||||||||| ||o
3' CGTAACGTGACGTAGAAGGGACTCGGTACCGC 5'
1409Physcomitrella patensTATGTCCATTGCAGTTGCATACalignmentplotGSM410805-5251PP1S392_41V6.1 cdna:known scaffold:ASM242v1:DS545279.1:241557:245376:-1 gene:PP1S392_41V6 transcript:PP1S392_41V6.1213260.01223
5'     TATGTCCATTGCAGTTGCATAC       3'
||||o||||||||||||||o
3' CTTGATACGGGTAACGTCAACGTGGACTTCGA 5'
1410Physcomitrella patensTATGTCCATTACAGTTGCATACalignmentplotGSM410805-5251PP1S28_209V6.1 cdna:known scaffold:ASM242v1:DS544917.1:1287855:1290057:1 gene:PP1S28_209V6 transcript:PP1S28_209V6.109870442.5
5'     TATGTCCATTACAGTTGCATAC       3'
|||||||||| ||||||||o|
3' CGTGATACAGGTAACGTCAACGTGTTCATCGG 5'
1411Physcomitrella patensACACTCTCTCCATTTCTCTGCalignmentplotGSM410805-5251PP1S13_145V6.1 cdna:known scaffold:ASM242v1:DS544902.1:1046333:1048755:1 gene:PP1S13_145V6 transcript:PP1S13_145V6.101833030302.5
5'     ACACTCTCTCCATTTCTC-TGC       3'
||||||||||||o|||| |||
3' GTGAAGTGAGAGAGGTAGAGAGTACGACTTGT 5'
1412Physcomitrella patensTATGATGCAGATTCTTCATCTalignmentplotGSM410805-5251PP1S4_166V6.1 cdna:known scaffold:ASM242v1:DS544893.1:1202417:1205054:1 gene:PP1S4_166V6 transcript:PP1S4_166V6.1213640.011861862
5'     TATGATGCAGATTCTTCATCT        3'
|||||||||||||||||| |
3' CTTAATACTACGTCTAAGAAGT-GTCGATGCT 5'
1413Physcomitrella patensTCTCTCTCAACCAACCATACalignmentplotGSM410805-5251PP1S47_331V6.1 cdna:known scaffold:ASM242v1:DS544936.1:2112084:2114662:-1 gene:PP1S47_331V6 transcript:PP1S47_331V6.1119820222.5
5'     TCTCTCTCAACCAACCATAC         3'
o|||||||||||||||||
3' TGAAGGAGAGAGTTGGTTGGTACCTGTGGGTG 5'
1414Physcomitrella patensTCTTAGATCTACAATGTCACAalignmentplotGSM410805-5251PP1S163_129V6.1 cdna:novel scaffold:ASM242v1:DS545052.1:922382:923413:-1 gene:PP1S163_129V6 transcript:PP1S163_129V6.112190222.5
5'     TCTTAGATCTACAATGTCACA        3'
||||||||||||||||o| |
3' GACAAGAATCTAGATGTTACGGGCTTCTCCCT 5'
1415Physcomitrella patensTCTTAGATCTACAATGCCTCTalignmentplotGSM410805-5251PP1S163_129V6.1 cdna:novel scaffold:ASM242v1:DS545052.1:922382:923413:-1 gene:PP1S163_129V6 transcript:PP1S163_129V6.112190222
5'     TCTTAGATCTACAATGCCTCT        3'
|||||||||||||||||| |
3' GACAAGAATCTAGATGTTACGG-GCTTCTCCC 5'
1416Physcomitrella patensTGACAGAAGAGAGTGAGCACalignmentplotGSM410805-5251PP1S142_146V6.1 cdna:known scaffold:ASM242v1:DS545031.1:1046714:1050562:-1 gene:PP1S142_146V6 transcript:PP1S142_146V6.10171501101103
5'    TGACAGA-AGAGAGTGAGCAC         3'
|||||| |||||||||| ||
3' CTGTCTGTCTGTCTCTCACTCTTGCTCCCCCA 5'
1417Physcomitrella patensTCTCCCTCAAAGGCTTCCAalignmentplotGSM410805-5251PP1S48_150V6.1 cdna:novel scaffold:ASM242v1:DS544937.1:1186304:1186936:-1 gene:PP1S48_150V6 transcript:PP1S48_150V6.101660.01333
5'     TCTCCCTCAAAGGCTTCCA          3'
|||||||||||| ||||
3' TAATAGAGGGAGTTTCGAAAGGCAGATGAACG 5'
1418Physcomitrella patensAGATTGACGAGTGCAAGAAGAalignmentplotGSM410805-5251PP1S249_56V6.2 cdna:known scaffold:ASM242v1:DS545138.1:324623:329162:-1 gene:PP1S249_56V6 transcript:PP1S249_56V6.2125030.03334
5'    AGATTGAC-GAGTGCAAGAAGA        3'
|||||| | ||o|||| |||o|
3' AGTTCTAACAGTCTTACGTACTTTTTTTGTGC 5'
1419Physcomitrella patensTGATGGTGATGCGCTTGTATCalignmentplotGSM410805-5251PP1S4_308V6.1 cdna:known scaffold:ASM242v1:DS544893.1:2050723:2051636:1 gene:PP1S4_308V6 transcript:PP1S4_308V6.104290361180.52
5'     TGATGGTGATGCGCTTGTA-TC       3'
||||||||||||| ||||| ||
3' AGTCACTACCACTACGCAAACATTAGGGTCTC 5'
1420Physcomitrella patensACACTCTCTCCATTTCTCTGCalignmentplotGSM410805-5251PP1S49_283V6.2 cdna:known scaffold:ASM242v1:DS544938.1:2081089:2083512:1 gene:PP1S49_283V6 transcript:PP1S49_283V6.224400.0420.6666672.5
5'     ACACTCTCTCCATTTCTCTGC        3'
|||||||||||o|||||| |
3' CACAAGTGAGAGAGGTGAAGAGA-GCGAGCAA 5'
1421Physcomitrella patensTGAATGATATTAACGTCCACGalignmentplotGSM410805-5251PP1S144_8V6.1 cdna:known scaffold:ASM242v1:DS545033.1:55598:58669:-1 gene:PP1S144_8V6 transcript:PP1S144_8V6.10214401331332.5
5'     TGAATGATATTAACGTCCACG        3'
o||||||o||o|||||||||
3' GAATGCTTACTGTAGTTGCAGGTGGACTGTCG 5'
1422Physcomitrella patensTGAATGATATTAACGTCCACGalignmentplotGSM410805-5251PP1S58_157V6.1 cdna:known scaffold:ASM242v1:DS544947.1:863228:867298:-1 gene:PP1S58_157V6 transcript:PP1S58_157V6.1221240.04213
5'     TGAATGATATTAACGTCCACG        3'
o||||||||||||||||| o
3' TGTGGCTTACTATAATTGCAGGCCTTTAACGA 5'
1423Physcomitrella patensTTGCTGTGCACTACTTAGTACalignmentplotGSM410805-5251PP1S66_193V6.2 cdna:novel scaffold:ASM242v1:DS544955.1:915118:917696:1 gene:PP1S66_193V6 transcript:PP1S66_193V6.208730132663.5
5'     TTGCTGTGCACTACTTAGTAC        3'
|||||||||||o| |||| |
3' AACGAACGACACGTGGTTAATCCAGTAGTAGA 5'
1424Physcomitrella patensGATGGGTTATCTCAAAGTGGAalignmentplotGSM410805-5251PP1S1_366V6.1 cdna:known scaffold:ASM242v1:DS544890.1:2269143:2269304:1 gene:PP1S1_366V6 transcript:PP1S1_366V6.10790334
5'     GATGGGTTATCTCAA-AGTGGA       3'
o||||o|o||| ||| |||o||
3' GCCGTTACCTAGTAGTGTTGTCATCTCGCTAG 5'
1425Physcomitrella patensTTTCCTGCCTCTCACTAGCTTalignmentplotGSM410805-5251PP1S134_4V6.1 cdna:known scaffold:ASM242v1:DS545023.1:15064:17235:1 gene:PP1S134_4V6 transcript:PP1S134_4V6.1016740.0412124
5'     TTTCCTGCCTCTCACTAGCTT        3'
||||||||||| ||||||
3' TATGTAAGGACGGAGATGGATCGACGTCAATC 5'
1426Physcomitrella patensTGTGTGTTCCGCTTCTTCTTTalignmentplotGSM410805-5251PP1S22_5V6.1 cdna:known scaffold:ASM242v1:DS544911.1:18974:20621:-1 gene:PP1S22_5V6 transcript:PP1S22_5V6.101388066662.5
5'     TGTGTGTTCCGCTTCTTCTTT        3'
|||||||||||||||||| o
3' AAATACACACAAGGCGAAGAAGCGCCAAATCT 5'
1427Physcomitrella patensTGAATGATATTAACGTCCACGalignmentplotGSM410805-5251PP1S308_11V6.1 cdna:known scaffold:ASM242v1:DS545197.1:269783:272152:-1 gene:PP1S308_11V6 transcript:PP1S308_11V6.1220060.0131313
5'     TGAATGATATTAACGTCCACG        3'
o||||||||||||||o|| |
3' AAGGGCTTACTATAATTGCGGGAGGCACGTAG 5'
1428Physcomitrella patensTTTTCGGGTGAGAGTGGTCCTalignmentplotGSM410805-5251PP1S1_206V6.1 cdna:known scaffold:ASM242v1:DS544890.1:1310411:1315271:1 gene:PP1S1_206V6 transcript:PP1S1_206V6.1219360222.5
5'     TTTTCGGGTGAGAGTGGTCCT        3'
|||||||o|||| |o|||||o
3' AAAGAAAAGCCTACTCACGCCAGGGCCACCTA 5'
1429Physcomitrella patensTCATGGTCGTGATCATGGTTGalignmentplotGSM410805-5251PP1S31_130V6.1 cdna:novel scaffold:ASM242v1:DS544920.1:698981:703414:-1 gene:PP1S31_130V6 transcript:PP1S31_130V6.121167012121.5
5'     TCATGGTCGTGATCATGGTTG        3'
||||||||||| |||||||o|
3' CACCAGTACCAGCACCAGTACCAGCACTGACA 5'
1430Physcomitrella patensTTCGTGCCAAGCTGTGTGCAalignmentplotGSM410805-5251PP1S267_8V6.1 cdna:known scaffold:ASM242v1:DS545156.1:70563:71817:-1 gene:PP1S267_8V6 transcript:PP1S267_8V6.10289024242.5
5'     TTCGTGCCAAGCTGTGTGCA         3'
|||||||||||| o|||||
3' CGCGTAGCACGGTTCGAGGCACGTAGGTTCTC 5'
1431Physcomitrella patensTTGCATGGAGTCTATGTCTGGAalignmentplotGSM410805-5251PP1S78_222V6.1 cdna:known scaffold:ASM242v1:DS544967.1:1504432:1507501:1 gene:PP1S78_222V6 transcript:PP1S78_222V6.1014580.011821823.5
5'     TTGCATGGAGTCTATGTCTGGA       3'
|||||o||||||||||o|o |
3' TCCTAACGTGCCTCAGATACGGGACAAACTTC 5'
1432Physcomitrella patensTGACAGAAGAGAGTGAGCACalignmentplotGSM410805-5251PP1S17_236V6.1 cdna:novel scaffold:ASM242v1:DS544906.1:1533196:1534667:-1 gene:PP1S17_236V6 transcript:PP1S17_236V6.12532072.333331.5
5'     TGACAGAAGAGAGTGAGCAC         3'
||||||||o||||||| |||
3' TCGAACTGTCTTTTCTCACTAGTGTTCCCTGT 5'
1433Physcomitrella patensTTGCGCGTGAATTTGAAGGCTalignmentplotGSM410805-5251PP1S136_98V6.1 cdna:known scaffold:ASM242v1:DS545025.1:636928:639842:-1 gene:PP1S136_98V6 transcript:PP1S136_98V6.10660038383.5
5'     TTGCGCGTGAATTTGAAGGCT        3'
||||||||||||||| ||o
3' ATTGAACGCGCACTTAAACCTCTCTGAGTTCG 5'
1434Physcomitrella patensTTCGTGCCAAGCTGTGTGCAalignmentplotGSM410805-5251PP1S10_319V6.1 cdna:known scaffold:ASM242v1:DS544899.1:2497693:2499736:-1 gene:PP1S10_319V6 transcript:PP1S10_319V6.123960.04552.5
5'     TTCGTGCCAAGCTGTGTGCA         3'
|||o||||||||| | ||||
3' CCCGAAGTACGGTTCGAAA-ACGTACCGGAAG 5'
1435Physcomitrella patensTGACCACCTTGATTCCGGCCTalignmentplotGSM410805-5251PP1S46_110V6.3 cdna:known scaffold:ASM242v1:DS544935.1:995497:1001219:-1 gene:PP1S46_110V6 transcript:PP1S46_110V6.3221870.02623
5'     TGACCACCTTGATTCCGGCCT        3'
||||| ||||||||||o|| o
3' TCGGACTGGAGGAACTAAGGTCGTGCAGGGCC 5'
1436Physcomitrella patensTTCTTGCACTCCTCCATCTCTalignmentplotGSM410805-5251PP1S109_145V6.1 cdna:known scaffold:ASM242v1:DS544998.1:906778:907714:1 gene:PP1S109_145V6 transcript:PP1S109_145V6.1051802575551511.5
5'     TTCTTGCACTCCTCCATCTCT        3'
|||||||||||||| |||||o
3' CCAGAAGAACGTGAGGAGTTAGAGGGAGTTGT 5'
1437Physcomitrella patensTGAATGATATTAACGTCCACGalignmentplotGSM410805-5251PP1S131_153V6.1 cdna:known scaffold:ASM242v1:DS545020.1:781375:784642:1 gene:PP1S131_153V6 transcript:PP1S131_153V6.1013160447223.52
5'     TGAATGATATTAACGTCCACG        3'
||||||||||| |||| ||||
3' TATTACTTACTATAACTGCAAGTGCAACTCTC 5'
1438Physcomitrella patensTTGCGCGTGAATTTGAAGGCTalignmentplotGSM410805-5251PP1S264_55V6.1 cdna:known scaffold:ASM242v1:DS545153.1:436103:438845:1 gene:PP1S264_55V6 transcript:PP1S264_55V6.1011230657065703.5
5'     TTGCGCGTGAATTTGAAGGCT        3'
|||||o|||| |||||oo||
3' TGTTCACGCGTACTTCAACTTTTGACAGATGT 5'
1439Physcomitrella patensTGACAGAAGAGAGTGAGCACalignmentplotGSM410805-5251PP1S50_125V6.1 cdna:known scaffold:ASM242v1:DS544939.1:1240965:1243861:-1 gene:PP1S50_125V6 transcript:PP1S50_125V6.1015660205102.51
5'     TGACAGAAGAGAGTGAGCAC         3'
||||||||||||| ||||||
3' CGCTACTGTCTTCTCTCTCTCGTGCTGGTCAC 5'
1440Physcomitrella patensTTCTTGCACTCCTCCATCTCTalignmentplotGSM410805-5251PP1S12_231V6.1 cdna:known scaffold:ASM242v1:DS544901.1:1365802:1367197:-1 gene:PP1S12_231V6 transcript:PP1S12_231V6.105740109210921.5
5'     TTCTTGCACTCCTCCATCTCT        3'
|||||||||||||| |||||o
3' CCAAAAGAACGTGAGGAGCTAGAGGGAGTTGT 5'
1441Physcomitrella patensCCTTCAACTTCATGCGTGCAalignmentplotGSM410805-5251PP1S414_8V6.1 cdna:known scaffold:ASM242v1:DS545298.1:71291:75557:1 gene:PP1S414_8V6 transcript:PP1S414_8V6.126870.05552.5
5'    CCTTCAA-CTTCATGCGTGCA         3'
||o|||| | |||||||||||
3' TTTGGGAGTTGGTAGTACGCACGTATACGTCA 5'
1442Physcomitrella patensTTCTTGCACTCCTCCATCTCTalignmentplotGSM410805-5251PP1S46_42V6.1 cdna:known scaffold:ASM242v1:DS544935.1:471232:472221:1 gene:PP1S46_42V6 transcript:PP1S46_42V6.10568021216212161.5
5'     TTCTTGCACTCCTCCATCTCT        3'
|||||||||||||| |||||o
3' TCAGAAGAACGTGAGGAGTTAGAGGGAGTCCT 5'
1443Physcomitrella patensTTCTTGCACTCCTCCATCTCTalignmentplotGSM410805-5251PP1S339_15V6.1 cdna:known scaffold:ASM242v1:DS545227.1:82462:83283:1 gene:PP1S339_15V6 transcript:PP1S339_15V6.10434040401.5
5'     TTCTTGCACTCCTCCATCTCT        3'
|||||||||||||| |||||o
3' GCAGAAGAACGTGAGGAGCTAGAGGGAGTTGT 5'
1444Physcomitrella patensTGACAACGAGAGAGAGCACGCalignmentplotGSM410805-5251PP1S50_125V6.1 cdna:known scaffold:ASM242v1:DS544939.1:1240965:1243861:-1 gene:PP1S50_125V6 transcript:PP1S50_125V6.1215650.0428143
5'    TGACA-ACGAGAGAGAGCACGC        3'
||||| | |||||||||||||
3' GCTACTGTCTTCTCTCTCTCGTGCTGGTCACA 5'
1445Physcomitrella patensACACTCTCTCCATTTCTCTGCalignmentplotGSM410805-5251PP1S49_283V6.3 cdna:known scaffold:ASM242v1:DS544938.1:2081089:2083512:1 gene:PP1S49_283V6 transcript:PP1S49_283V6.324470.0420.6666672.5
5'     ACACTCTCTCCATTTCTCTGC        3'
|||||||||||o|||||| |
3' CACAAGTGAGAGAGGTGAAGAGA-GCGACAAT 5'
1446Physcomitrella patensTTCTTGCACTCCTCCATCTCTalignmentplotGSM410805-5251PP1S352_14V6.1 cdna:known scaffold:ASM242v1:DS545240.1:102740:103698:-1 gene:PP1S352_14V6 transcript:PP1S352_14V6.1051602575551511.5
5'     TTCTTGCACTCCTCCATCTCT        3'
|||||||||||||| |||||o
3' CCAGAAGAACGTGAGGAGTTAGAGGGAGTTGT 5'
1447Physcomitrella patensCCACTCTCTCCGTTTCCCTTCCalignmentplotGSM410805-5251PP1S4_174V6.1 cdna:known scaffold:ASM242v1:DS544893.1:1238882:1242329:-1 gene:PP1S4_174V6 transcript:PP1S4_174V6.1018340688668863
5'     CCACTCTCTCCGTTTCCCTTCC       3'
|||||||||||||||| | ||
3' AAGTAGTGAGAGAGGCAAAGG-ACGGGGAACA 5'
1448Physcomitrella patensACACTCTCTCCATTTCTCTGCalignmentplotGSM410805-5251PP1S4_174V6.1 cdna:known scaffold:ASM242v1:DS544893.1:1238882:1242329:-1 gene:PP1S4_174V6 transcript:PP1S4_174V6.1018340.01688668863
5'     ACACTCTCTCCATTTCTCTGC        3'
|||||||||| |||| ||||
3' AAGTAGTGAGAGAGGCAAAG-GACGGGGAACA 5'
1449Physcomitrella patensTTTCTATCTTCTCTTCCAATCalignmentplotGSM410805-5251PP1S809_2V6.1 cdna:novel scaffold:ASM242v1:DS545619.1:11990:14182:1 gene:PP1S809_2V6 transcript:PP1S809_2V6.111150222
5'     TTTCTATCTTCTCTTCCAATC        3'
|||||||||||||||||| |
3' TTAGAAAGATAGAAGAGAAGGTGATTAGAATA 5'
1450Physcomitrella patensTGAAAGTCCTTCACAAACAACalignmentplotGSM410805-5251PP1S9_288V6.3 cdna:known scaffold:ASM242v1:DS544898.1:2018965:2020418:1 gene:PP1S9_288V6 transcript:PP1S9_288V6.30540.0173.53.5
5'     TGAAAGTCCTTCACAAACAAC        3'
o|||o||||o||||||| ||
3' TTTTCTTTTTAGGAGGTGTTTGGTGGTTTTCG 5'
1451Physcomitrella patensTGACAGAAGAGAGTGAGCACalignmentplotGSM410805-5251PP1S194_53V6.1 cdna:known scaffold:ASM242v1:DS545083.1:250978:253882:-1 gene:PP1S194_53V6 transcript:PP1S194_53V6.101401052521
5'     TGACAGAAGAGAGTGAGCAC         3'
||||||||||||| ||||||
3' CGTTACTGTCTTCTCTCTCTCGTGCCGGTCTC 5'
1452Physcomitrella patensTACTATGAGAATCTCGCGGCCalignmentplotGSM410805-5251PP1S310_52V6.1 cdna:novel scaffold:ASM242v1:DS545199.1:405418:408410:1 gene:PP1S310_52V6 transcript:PP1S310_52V6.101486030153.5
5'     TACTATGAGAATCTCGCGGCC        3'
|||||||||||||| ||o|
3' CGCCATGATACTCTTAGA-CGTCCCAATTACC 5'
1453Physcomitrella patensTGGCATTGTAGGTTTAAGAGCalignmentplotGSM410805-5251PP1S11_231V6.1 cdna:known scaffold:ASM242v1:DS544900.1:1897397:1904060:1 gene:PP1S11_231V6 transcript:PP1S11_231V6.101861083833
5'     TGGCATTGTAGGTTTAAGAGC        3'
|||||||| ||||o|||||o
3' GATTACCGTAACCTCCAGATTCTTTAGTGTGT 5'
1454Physcomitrella patensTGACAACGAGAGAGAGCACGCalignmentplotGSM410805-5251PP1S194_53V6.1 cdna:known scaffold:ASM242v1:DS545083.1:250978:253882:-1 gene:PP1S194_53V6 transcript:PP1S194_53V6.1214000.03553
5'    TGACA-ACGAGAGAGAGCACGC        3'
||||| | |||||||||||||
3' GTTACTGTCTTCTCTCTCTCGTGCCGGTCTCA 5'
1455Physcomitrella patensTATGTCCATTACAGTTGCATACalignmentplotGSM410805-5251PP1S36_325V6.1 cdna:known scaffold:ASM242v1:DS544925.1:2156476:2159302:1 gene:PP1S36_325V6 transcript:PP1S36_325V6.10105601531533.5
5'     TATGTCCATTACAGTTGCATAC       3'
|||||||||| ||||||||o
3' CGTGATACAGGTAACGTCAACGTGGCCATTGA 5'
1456Physcomitrella patensTGCATGACCGTCTCTTCCTGCalignmentplotGSM410805-5251PP1S166_97V6.1 cdna:known scaffold:ASM242v1:DS545055.1:661682:665473:-1 gene:PP1S166_97V6 transcript:PP1S166_97V6.1218990.0123232.5
5'    TGC-ATGACCGTCTCTTCCTGC        3'
||| ||||||| ||||||||o|
3' GTGACGTTACTGGCTGAGAAGGATGATACGAA 5'
1457Physcomitrella patensTTCTTGCACTCCTCCATCTCTalignmentplotGSM410805-5251PP1S66_47V6.1 cdna:known scaffold:ASM242v1:DS544955.1:188370:189289:1 gene:PP1S66_47V6 transcript:PP1S66_47V6.1052902575551512.5
5'     TTCTTGCACTCCTCCATCTCT        3'
||||||||||| || |||||o
3' CCAGAAGAACGTGAGAAGCTAGAGGGAGTTGT 5'
1458Physcomitrella patensTTCGTGCCAAGCTGTGTGCAalignmentplotGSM410805-5251PP1S122_100V6.1 cdna:known scaffold:ASM242v1:DS545011.1:765910:767724:1 gene:PP1S122_100V6 transcript:PP1S122_100V6.123340.0511112.5
5'     TTCGTGCCAAGCTGTGTGCA         3'
|||o||||||||| | ||||
3' ACCAAAGTACGGTTCGAAA-ACGTACCGGAAG 5'
1459Physcomitrella patensTATGATGCAGATTCTTCATCTalignmentplotGSM410805-5251PP1S371_62V6.1 cdna:known scaffold:ASM242v1:DS545258.1:311162:313926:1 gene:PP1S371_62V6 transcript:PP1S371_62V6.1210880.02662.5
5'     TATGATGCAGATTCTTCATCT        3'
|||||||||||||||||o |
3' TACGCTACTACGTCTAAGAAGTGCATGAGTTA 5'
1460Physcomitrella patensTCTCCCTCAAAGGCTTCCAalignmentplotGSM410805-5251PP1S78_141V6.1 cdna:known scaffold:ASM242v1:DS544967.1:860994:863829:1 gene:PP1S78_141V6 transcript:PP1S78_141V6.102288020103
5'     TCTCCCTCAAAGGCTTCCA          3'
||||||||||||| |||
3' TCGTTGAGGGAGTTTCCGTAGGAAGTGATGCC 5'
1461Physcomitrella patensTTCGTGCCAAGCTGTGTGCAalignmentplotGSM410805-5251PP1S184_64V6.1 cdna:known scaffold:ASM242v1:DS545073.1:411877:413029:-1 gene:PP1S184_64V6 transcript:PP1S184_64V6.1287501251252
5'     TTCGTGCCAAGCTGTGTGCA         3'
|||||o|||||||| ||o||
3' AATAAAGCATGGTTCGACTCATGTCTTTATAA 5'
1462Physcomitrella patensTTGCATGGAGTCTATGTCTGGAalignmentplotGSM410805-5251PP1S267_56V6.1 cdna:known scaffold:ASM242v1:DS545156.1:347789:352289:1 gene:PP1S267_56V6 transcript:PP1S267_56V6.101852054516136291.5
5'     TTGCATGGAGTCTATGTCTGGA       3'
||||||||||||||| ||||o|
3' TACAAACGTACCTCAGATA-AGACTTACACTT 5'
1463Physcomitrella patensACAGTCTCTGACTTCTCGCAGalignmentplotGSM410805-5251PP1S33_92V6.1 cdna:novel scaffold:ASM242v1:DS544922.1:537516:541093:1 gene:PP1S33_92V6 transcript:PP1S33_92V6.101066014144
5'     ACAGTCTCTGACTTCTCGCAG        3'
||||||||||||||||o o
3' TAGAAGTCAGAGACTGAAGAGTAGTCGGAAAA 5'
1464Physcomitrella patensGCACAAATATGCACTACAAACalignmentplotGSM410805-5251PP1S11_129V6.1 cdna:known scaffold:ASM242v1:DS544900.1:1022091:1025077:-1 gene:PP1S11_129V6 transcript:PP1S11_129V6.1216710.04663
5'    GCAC-AAATATGCACTACAAAC        3'
|||| ||| ||||| |||||||
3' CTACGTGTTTTCTACGTAATGTTTGAGTCCGA 5'
1465Physcomitrella patensTTGCTGTGCACTACTTAGTACalignmentplotGSM410805-5251PP1S123_164V6.1 cdna:known scaffold:ASM242v1:DS545012.1:1209167:1214007:1 gene:PP1S123_164V6 transcript:PP1S123_164V6.101773024243
5'     TTGCTGTGCACTACTTAGTAC        3'
|||||||||| |||||| ||
3' ATGCTACGACACGTGTTGAATCTTGGAGGTGA 5'
1466Physcomitrella patensTTGTAGAGTCATGCACCTCTGalignmentplotGSM410805-5251PP1S301_53V6.1 cdna:known scaffold:ASM242v1:DS545190.1:510354:517593:1 gene:PP1S301_53V6 transcript:PP1S301_53V6.1218840.04773
5'     TTGTAGAGTCATGCACCTCTG        3'
||||o|||||||||| ||o|
3' AAACTACATTTCAGTACGTG-AGGCGGTAAGT 5'
1467Prunus persicaTGACAGAAGAAAGAGAGCACalignmentplotGSM944975_peach_deg_procppa024285m|PACid:176679810822074741
5'     TGACAGAAGAAAGAGAGCAC         3'
|||||||||| |||||||||
3' ACCTACTGTCTTCTCTCTCTCGTGCAGGACAG 5'
1468Prunus persicaTTCCACAGCTTTCTTGAACalignmentplotGSM944975_peach_deg_procppa019752m|PACid:176617170716038381
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' ACTAAGGTGTCCGAAAGAACTTGCCCCGGCCG 5'
1469Prunus persicaGCTCTTCCTCTTCTTCTTCTTalignmentplotGSM944975_peach_deg_procppa016948m|PACid:1766346119880.02213
5'     GCTCTTCCTCTTCTTCTTCTT        3'
||||||||| |||||||| |
3' AGAAGGAGAAGGAGTAGAAGAAGTACGAGAAG 5'
1470Prunus persicaCGCATTTTCTCAGCAGCCAAAalignmentplotGSM944975_peach_deg_procppa015622m|PACid:1765207008560.0217173.5
5'     CGCATTTTCTCAGCAGCCAAA        3'
|||o||o|| ||||o|||||
3' CTACACGTGAAGGATTCGTTGGTTTAGTTCGC 5'
1471Prunus persicaTTGACAGAAGAAAGAGAGCACalignmentplotGSM944975_peach_deg_procppa009978m|PACid:1766038801640.041011014
5'     TTGACAGAAGAAAGAGAGCAC        3'
|| |||| |||| ||||| ||
3' CTCTAA-TGTCCTCTTCCTCTCTTGACTCATT 5'
1472Prunus persicaTGACAGAAGAAAGAGAGCACalignmentplotGSM944975_peach_deg_procppa012607m|PACid:176571392790057571
5'     TGACAGAAGAAAGAGAGCAC         3'
|||||||||| |||||||||
3' CCTAACTGTCTTCTCTCTCTCGTGCGATCCGA 5'
1473Prunus persicaCTTTGTATTCTTCCACAGCTTalignmentplotGSM944975_peach_deg_procppa003603m|PACid:176549222997013133
5'     CTTTGTATTCTTCCACAGCTT        3'
| ||||| ||o||||||||o|
3' TCTTG-AACATTAGGAGGTGTCGGAAGTGAAG 5'
1474Prunus persicaTTGACAGAAGAAAGAGAGCACalignmentplotGSM944975_peach_deg_procppa012607m|PACid:176571392791094941
5'     TTGACAGAAGAAAGAGAGCAC        3'
||||||||||| |||||||||
3' TCCTAACTGTCTTCTCTCTCTCGTGCGATCCG 5'
1475Prunus persicaTTCCACAGCTTTCTTGAACalignmentplotGSM944975_peach_deg_procppa011917m|PACid:17645498036801581581
5'    TTCCAC-AGCTTTCTTGAAC          3'
|||||| |||||||||||||
3' ACTAAGGTGTTCGAAAGAACTTGCTATCGCTG 5'
1476Prunus persicaTTCCACAGCTTTCTTGAACalignmentplotGSM944975_peach_deg_procppa017355m|PACid:176631921198012122.5
5'     TTCCACAGCTTTCTTGAAC          3'
o||||||||||||||| |
3' ATCTGAGGTGTCGAAAGAACCCGAGAAAGTAC 5'
1477Prunus persicaTTCCACAGCTTTCTTGAACalignmentplotGSM944975_peach_deg_procppa021277m|PACid:17660357045204394391
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' TAAAAGGTGTCCGAAAGAACTTGCGACCGCCG 5'
1478Prunus persicaTGCACTGCCTCTTCCCTGGCalignmentplotGSM944975_peach_deg_procppa018507m|PACid:17644136218020201
5'     TGCACTGCCTCTTCCCTGGC         3'
|||||||||||||||||| |
3' AAGGACGTGACGGAGAAGGGAC-GAGTCTGT 5'
1479Prunus persicaTGCACTGCCTCTTCCCTGGCalignmentplotGSM944975_peach_deg_procppa021383m|PACid:17655177215060601.5
5'     TGCACTGCCTCTTCCCTGGC         3'
|||||||||||| |||||o|
3' GGGGACGTGACGGAGATGGGACTGGGTA 5'
1480Prunus persicaTTCCACAGCTTTCTTGAACalignmentplotGSM944975_peach_deg_procppa022199m|PACid:17660548038305575571
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' ACTAAGGTGTCCGAAAGAACTTGCCAACGCCG 5'
1481Prunus persicaTTGAGCCGTGCCAATATCAalignmentplotGSM944975_peach_deg_procppa001781m|PACid:1765636621286017171.5
5'     TTGAGCCGTGCCAATATCA          3'
||||||||o|||||||||
3' CACTAACTCGGCGCGGTTATAGGGAACGCGCT 5'
1482Prunus persicaTTCCACAGCTTTCTTGAACalignmentplotGSM944975_peach_deg_procppa006753m|PACid:1766261329210.05992
5'     TTCCACAGCT-TTCTTGAAC         3'
|||||||||| ||||||| |
3' CGTCAAGGTGTCGACAAGAACTAGCGTACACC 5'
1483Prunus persicaTTCCACAGCTTTCTTGAACalignmentplotGSM944975_peach_deg_procppa024293m|PACid:176519022569014141
5'    TTCCACA-GCTTTCTTGAAC          3'
||||||| ||||||||||||
3' TTGAAGGTGTACGAAAGAACTTGCCCCTGCCG 5'
1484Solanum lycopersicumTTTGGATTGAAGGGAGCTCalignmentplotGSM553688-9229Solyc06g073640.2.1 cdna:known chromosome:SL2.40:6:41820787:41825280:-1 gene:Solyc06g073640.2 transcript:Solyc06g073640.2.10105401161161
5'     TTTGGATTGAAGGGAGCTC          3'
|||||| ||||||||||||
3' CATGAAACCTCACTTCCCTCGAGCTCGAAGAA 5'
1485Solanum lycopersicumTGATTGAGCCGTGCCAATATCalignmentplotGSM553688-9229Solyc08g078800.1.1 cdna:novel chromosome:SL2.40:8:59683241:59684665:-1 gene:Solyc08g078800.1 transcript:Solyc08g078800.1.10407045450.5
5'     TGATTGAGCCGTGCCAATATC        3'
|||||||||||o|||||||||
3' GACAACTAACTCGGCGCGGTTATAGTAAACGC 5'
1486Solanum lycopersicumTCGCTTGGTGCAGGTCGGGACalignmentplotGSM553688-9229Solyc06g072300.2.1 cdna:known chromosome:SL2.40:6:40960724:40969540:-1 gene:Solyc06g072300.2 transcript:Solyc06g072300.2.12388020203
5'     TCGCTTGGTGCAGGTCGGGAC        3'
| ||||||||||| ||||||
3' AGTCAACGAACCACGTCGAGCCCTTGACCACC 5'
1487Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553688-9229Solyc10g084340.1.1 cdna:novel chromosome:SL2.40:10:63251955:63255101:-1 gene:Solyc10g084340.1 transcript:Solyc10g084340.1.101252046462.5
5'     AGAATCTTGATGATGCTGCAT        3'
|||||o|||||||||||||
3' AAAGGCTTAGGACTACTACGACGTCATCTCTT 5'
1488Solanum lycopersicumTGAAGCTGCCAGCATGATCTalignmentplotGSM553688-9229Solyc02g037530.2.1 cdna:known chromosome:SL2.40:2:21756443:21766699:1 gene:Solyc02g037530.2 transcript:Solyc02g037530.2.10229106283143
5'     TGAAGCTGCCAGCATGATCT         3'
||||||||||| ||||||
3' TTTATGTTCGACGGTCGGACTAGAAACTCCCA 5'
1489Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553688-9229Solyc02g064960.2.1 cdna:known chromosome:SL2.40:2:30651561:30655131:1 gene:Solyc02g064960.2 transcript:Solyc02g064960.2.1217440.02157.52.5
5'     AGAATCTTGATGATGCTGCAT        3'
|||||o|||||||||||||
3' ACTCCCTTAGGACTACTACGACGTCGTCAACG 5'
1490Solanum lycopersicumTCGGACCAGGCTTCATTCCCCalignmentplotGSM553688-9229Solyc11g069470.1.1 cdna:novel chromosome:SL2.40:11:51150759:51156271:1 gene:Solyc11g069470.1 transcript:Solyc11g069470.1.10571021212.5
5'     TCGGACCAGGCTTCATTCCCC        3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAGC 5'
1491Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553688-9229Solyc09g007260.2.1 cdna:novel chromosome:SL2.40:9:856629:859952:1 gene:Solyc09g007260.2 transcript:Solyc09g007260.2.101523025252.5
5'     AGAATCTTGATGATGCTGCAT        3'
|||||o|||||||||||||
3' AATCGCTTAGGACTACTACGACGTCATCTCTT 5'
1492Solanum lycopersicumTCAATGCTACATACTCATCCCalignmentplotGSM553688-9229Solyc03g120270.2.1 cdna:novel chromosome:SL2.40:3:62768790:62778357:1 gene:Solyc03g120270.2 transcript:Solyc03g120270.2.1229220.0427273.5
5'     TCAATGCTACATACTCATCCC        3'
||||||||||| | |||o ||
3' TTTGAGTTACGATGTTTTAGTGTGGTGAACGT 5'
1493Solanum lycopersicumTCGGACCAGGCTTCATTCCCCalignmentplotGSM553688-9229Solyc12g044410.1.1 cdna:novel chromosome:SL2.40:12:44793673:44801092:1 gene:Solyc12g044410.1 transcript:Solyc12g044410.1.105590316105.3332.5
5'     TCGGACCAGGCTTCATTCCCC        3'
o||||||||||||||||||
3' CTTAGGCCTGGTCCGAAGTAAGGTCCGTAAAC 5'
1494Solanum lycopersicumCTTCCTTCTTCTTCTTGCAAGalignmentplotGSM553688-9229Solyc11g013120.1.1 cdna:novel chromosome:SL2.40:11:5977807:5980510:-1 gene:Solyc11g013120.1 transcript:Solyc11g013120.1.1012510.0210104
5'     CTTCCTTCTTCTTCTTGCAAG        3'
||| ||||o|||o ||||| |
3' CTATGAACGAAGGAGAGTAACGTACCTTAAGT 5'
1495Solanum lycopersicumTTGAGCCGTGCCAATATCACGalignmentplotGSM553688-9229Solyc08g078800.1.1 cdna:novel chromosome:SL2.40:8:59683241:59684665:-1 gene:Solyc08g078800.1 transcript:Solyc08g078800.1.124040.0228282.5
5'     TTGAGCCGTGCCAATATCACG        3'
||||||||o||||||||||
3' AACTAACTCGGCGCGGTTATAGTAAACGCGCA 5'
1496Solanum lycopersicumTTGACAGAAGATAGAGAGCATalignmentplotGSM553688-9229Solyc12g038520.1.1 cdna:novel chromosome:SL2.40:12:35933880:35935930:-1 gene:Solyc12g038520.1 transcript:Solyc12g038520.1.109820199.52.5
5'     TTGACAGAAGATAGAGAGCAT        3'
|||||||||| ||||||||o
3' ACTCTACTGTCTTCTCTCTCTCGTGTCGGTCT 5'
1497Solanum lycopersicumTGCCTGGCTCCCTGTATGCCAalignmentplotGSM553688-9229Solyc06g075150.2.1 cdna:known chromosome:SL2.40:6:43020594:43023443:1 gene:Solyc06g075150.2 transcript:Solyc06g075150.2.101502038381
5'     TGCCTGGCTCCCTGTATGCCA        3'
||||||||||||||||||||
3' TTGTACGGACCGAGGGACATACGGACGTCATT 5'
1498Solanum lycopersicumTTGAGCCGTGCCAATATCACGalignmentplotGSM553688-9229Solyc01g090950.2.1 cdna:novel chromosome:SL2.40:1:76416878:76419772:-1 gene:Solyc01g090950.2 transcript:Solyc01g090950.2.101578050502.5
5'     TTGAGCCGTGCCAATATCACG        3'
||||||||o||||||||| |
3' CACTAACTCGGCGCGGTTATAGGGAACGCGCT 5'
1499Solanum lycopersicumTCGGACCAGGCTTCATTCCCCalignmentplotGSM553688-9229Solyc08g066500.2.1 cdna:novel chromosome:SL2.40:8:52415522:52421037:-1 gene:Solyc08g066500.2 transcript:Solyc08g066500.2.105770316105.3332.5
5'     TCGGACCAGGCTTCATTCCCC        3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAAA 5'
1500Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553688-9229Solyc04g049800.2.1 cdna:novel chromosome:SL2.40:4:42714973:42717503:1 gene:Solyc04g049800.2 transcript:Solyc04g049800.2.101117096961.5
5'     AGAATCTTGATGATGCTGCAT        3'
||||||o|||||||||||||
3' CATCTCTTAGGACTACTACGACGTCTTCTTCT 5'
1501Solanum lycopersicumTGATTGAGCCGTGCCAATATCalignmentplotGSM553688-9229Solyc01g090950.2.1 cdna:novel chromosome:SL2.40:1:76416878:76419772:-1 gene:Solyc01g090950.2 transcript:Solyc01g090950.2.121581016160.5
5'     TGATTGAGCCGTGCCAATATC        3'
|||||||||||o|||||||||
3' GACCACTAACTCGGCGCGGTTATAGGGAACGC 5'
1502Solanum lycopersicumTCGGACCAGGCTTCATTCCCCalignmentplotGSM553688-9229Solyc02g024070.2.1 cdna:novel chromosome:SL2.40:2:15627267:15633567:1 gene:Solyc02g024070.2 transcript:Solyc02g024070.2.12819026262.5
5'     TCGGACCAGGCTTCATTCCCC        3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTCGA 5'
1503Solanum lycopersicumTCGGACCAGGCTTCATTCCCCalignmentplotGSM553688-9229Solyc02g069830.2.1 cdna:novel chromosome:SL2.40:2:34234662:34242222:-1 gene:Solyc02g069830.2 transcript:Solyc02g069830.2.12629020202.5
5'     TCGGACCAGGCTTCATTCCCC        3'
o||||||||||||||| |||
3' CTAAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5'
1504Solanum lycopersicumTTTCCAATTCCACCCATTCCTAalignmentplotGSM553688-9229Solyc06g005410.2.1 cdna:novel chromosome:SL2.40:6:421845:422623:-1 gene:Solyc06g005410.2 transcript:Solyc06g005410.2.103890.022602604
5'     TTTCCAATTCCACCCATTCCTA       3'
||||| |||||||| || || |
3' ACAAAAAGGATAAGGTGGTTACGG-TATATAT 5'
1505Solanum lycopersicumTGACAGAAGAGAGTGAGCACAalignmentplotGSM553688-9229Solyc12g038520.1.1 cdna:novel chromosome:SL2.40:12:35933880:35935930:-1 gene:Solyc12g038520.1 transcript:Solyc12g038520.1.12981052.51
5'     TGACAGAAGAGAGTGAGCACA        3'
||||||||||||| |||||||
3' CTCTACTGTCTTCTCTCTCTCGTGTCGGTCTC 5'
1506Solanum lycopersicumTTTGGATTGAAGGGAGCTCalignmentplotGSM553688-9229Solyc12g014120.1.1 cdna:known chromosome:SL2.40:12:4931940:4933799:-1 gene:Solyc12g014120.1 transcript:Solyc12g014120.1.124720.0313132
5'     TTTGGATTGAAGGGAGCTC          3'
||||| |||||||| ||||
3' ATTAAAACCAAACTTCCCCCGAGGTAGACTAT 5'
1507Solanum lycopersicumTGCCTGGCTCCCTGTATGCCAalignmentplotGSM553688-9229Solyc11g013470.1.1 cdna:novel chromosome:SL2.40:11:6496469:6499311:-1 gene:Solyc11g013470.1 transcript:Solyc11g013470.1.10554079791.5
5'     TGCCTGGCTCCCTGTATGCCA        3'
||||||||||||||o|||||
3' TAGTACGGACCGAGGGACGTACGGGCGTCCTT 5'
1508Solanum lycopersicumTGACAGAAGAGAGTGAGCACAalignmentplotGSM553688-9229Solyc07g062980.2.1 cdna:novel chromosome:SL2.40:7:62823040:62824209:-1 gene:Solyc07g062980.2 transcript:Solyc07g062980.2.10448048482.5
5'     TGACAGAAGAGAGTGAGCACA        3'
||||||||||||||o||||
3' CCCGACTGTCTTCTCTCATTCGTAAAGTAGGT 5'
1509Solanum lycopersicumTTGACAGAAGATAGAGAGCATalignmentplotGSM553688-9229Solyc05g015510.2.1 cdna:novel chromosome:SL2.40:5:10767268:10772201:-1 gene:Solyc05g015510.2 transcript:Solyc05g015510.2.10296203913911.5
5'     TTGACAGAAGATAGAGAGCAT        3'
||||||||||| ||||||||o
3' AATCAACTGTCTTCTCTCTCTCGTGCTCCTTT 5'
1510Solanum lycopersicumTAGCCAAGGATGACTTGCCTGalignmentplotGSM553688-9229Solyc01g087240.2.1 cdna:novel chromosome:SL2.40:1:73938193:73944527:1 gene:Solyc01g087240.2 transcript:Solyc01g087240.2.101171041412.5
5'     TAGCCAAGGATGACTTGCCTG        3'
|||||||o|||| |||||||
3' TTGGTTCGGTTCTTACTTAACGGACTCGTATC 5'
1511Solanum lycopersicumTGACAGAAGATAGAGAGCACalignmentplotGSM553688-9229Solyc07g006030.2.1 cdna:novel chromosome:SL2.40:7:866918:880889:-1 gene:Solyc07g006030.2 transcript:Solyc07g006030.2.123033010102.5
5'     TGACAGAAGATAGAGAGCAC         3'
|| ||o||||||||| ||||
3' TTCTAC-GTTTTCTATCTCCCGTGCTAACTGT 5'
1512Solanum lycopersicumTTGACAGAAGATAGAGAGCATalignmentplotGSM553688-9229Solyc02g070280.2.1 cdna:novel chromosome:SL2.40:2:34632835:34637531:-1 gene:Solyc02g070280.2 transcript:Solyc02g070280.2.10391012123
5'     TTGACAGAAGATAGAGAGCAT        3'
|o||||||||o||||||||
3' GTCACATTGTCTTCTGTCTCTCGTTCCGCCTC 5'
1513Solanum lycopersicumTTGGATTGAAGGGAGCTCTalignmentplotGSM553688-9229Solyc06g074300.2.1 cdna:novel chromosome:SL2.40:6:42312797:42316469:-1 gene:Solyc06g074300.2 transcript:Solyc06g074300.2.125030.0312122.5
5'     TTGGATTGAAGGGAGCTCT          3'
||||||| |||o|| ||||
3' TTGGAACCTAAGTTCTCT-GAGAACCACCCTT 5'
1514Solanum lycopersicumTTGACAGAAGATAGAGAGCATalignmentplotGSM553688-9229Solyc10g078700.1.1 cdna:novel chromosome:SL2.40:10:59754038:59758728:-1 gene:Solyc10g078700.1 transcript:Solyc10g078700.1.1077501981981.5
5'     TTGACAGAAGATAGAGAGCAT        3'
||||||||||| ||||||||o
3' GCTAAACTGTCTTCTCTCTCTCGTGGTGAACT 5'
1515Solanum lycopersicumTCGATAAACCTCTGCATCCAGalignmentplotGSM553688-9229Solyc10g005130.2.1 cdna:novel chromosome:SL2.40:10:111879:125251:1 gene:Solyc10g005130.2 transcript:Solyc10g005130.2.103259088881
5'    TCGATAA-ACCTCTGCATCCAG        3'
||||||| ||||||||||||||
3' TGTAGCTATTATGGAGACGTAGGTCGAGCAAC 5'
1516Solanum lycopersicumTTGACAGAAGATAGAGAGCATalignmentplotGSM553688-9229Solyc05g015840.2.1 cdna:novel chromosome:SL2.40:5:12394400:12397051:1 gene:Solyc05g015840.2 transcript:Solyc05g015840.2.127600.0210102.5
5'     TTGACAGAAGATAGAGAGCAT        3'
|||||||||| ||||||||o
3' CGACTACTGTCTTCTCTCTCTCGTGCTAGTCT 5'
1517Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553688-9229Solyc03g044300.2.1 cdna:known chromosome:SL2.40:3:12742062:12746690:1 gene:Solyc03g044300.2 transcript:Solyc03g044300.2.101384011112.5
5'     AGAATCTTGATGATGCTGCAT        3'
|||||o|||||||||||||
3' ACCCCCTTAGGACTACTACGACGTCGTCAACG 5'
1518Solanum lycopersicumTGAAGCTGCCAGCATGATCTalignmentplotGSM553688-9229Solyc03g031970.2.1 cdna:known chromosome:SL2.40:3:8739906:8747501:1 gene:Solyc03g031970.2 transcript:Solyc03g031970.2.10229406283143
5'     TGAAGCTGCCAGCATGATCT         3'
||||||||||| ||||||
3' TTTATGTTCGACGGTCGGACTAGAAACTCCCA 5'
1519Solanum lycopersicumTAGCCAAGGATGACTTGCCTGalignmentplotGSM553688-9229Solyc01g006930.2.1 cdna:novel chromosome:SL2.40:1:1506539:1511917:1 gene:Solyc01g006930.2 transcript:Solyc01g006930.2.101328057573.5
5'     TAGCCAAGGATGACTTGCCTG        3'
|||||||||||| o||||oo
3' ACGATTCGGTTCCTACTTGACGGGTACTATCG 5'
1520Solanum lycopersicumCTAGATTCACGCACAAGCTCGalignmentplotGSM553688-9229Solyc02g069260.2.1 cdna:novel chromosome:SL2.40:2:33782147:33788905:1 gene:Solyc02g069260.2 transcript:Solyc02g069260.2.10326003683682.5
5'     CTAGATTCACGCACAAGCTCG        3'
|||||||||||||||o|||
3' GGGTAATCTAAGTGCGTGTTTGAGGAAACGTT 5'
1521Solanum lycopersicumTTGACAGAAGATAGAGAGCATalignmentplotGSM553688-9229Solyc03g114850.2.1 cdna:novel chromosome:SL2.40:3:58796755:58802237:1 gene:Solyc03g114850.2 transcript:Solyc03g114850.2.1214820199.52
5'     TTGACAGAAGATAGAGAGCAT        3'
|||||||||| |||||||||
3' ACTCTACTGTCTTCTCTCTCTCGTAACGACCT 5'
1522Solanum lycopersicumTAGCCAAGGATGACTTGCCTGalignmentplotGSM553688-9229Solyc08g062210.2.1 cdna:novel chromosome:SL2.40:8:47964141:47973284:1 gene:Solyc08g062210.2 transcript:Solyc08g062210.2.101111038382.5
5'     TAGCCAAGGATGACTTGCCTG        3'
||||||||||||| o|||| |
3' TTGTATCGGTTCCTACTTGACGG-CTAATAGG 5'
1523Solanum lycopersicumTAGCCAAGGATGACTTGCCTAalignmentplotGSM553688-9229Solyc08g062210.2.1 cdna:novel chromosome:SL2.40:8:47964141:47973284:1 gene:Solyc08g062210.2 transcript:Solyc08g062210.2.101111038382.5
5'     TAGCCAAGGATGACTTGCCTA        3'
||||||||||||| o|||| |
3' TTGTATCGGTTCCTACTTGACGGCTAATAGGT 5'
1524Solanum lycopersicumTCATCTTCATCATCATCTTTAalignmentplotGSM553688-9229Solyc01g090830.2.1 cdna:novel chromosome:SL2.40:1:76291388:76293073:1 gene:Solyc01g090830.2 transcript:Solyc01g090830.2.1027501472.5
5'     TCATCTTCATCATCATCTTTA        3'
||||| ||||||||||| |o|
3' AAGTAGTAGTAGTAGTAGTAGTAGTAGGTATA 5'
1525Solanum lycopersicumTGCCTGGCTCCCTGTATGCCAalignmentplotGSM553688-9229Solyc11g069500.1.1 cdna:known chromosome:SL2.40:11:51188434:51191569:-1 gene:Solyc11g069500.1 transcript:Solyc11g069500.1.101313032321
5'     TGCCTGGCTCCCTGTATGCCA        3'
||||||||||||||||||||
3' TCGTACGGACCGAGGGACATACGGACGTCACT 5'
1526Solanum lycopersicumTCATCTTCATCATCATCTTTAalignmentplotGSM553688-9229Solyc07g044900.1.1 cdna:novel chromosome:SL2.40:7:55287417:55287569:1 gene:Solyc07g044900.1 transcript:Solyc07g044900.1.101010.0270.8753.5
5'     TCATCTTCATCATCATCTTTA        3'
|| || ||||||||| |||o|
3' CAGCAGCAGTAGTAGTAGTCGAAGTTTGAGAG 5'
1527Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553688-9229Solyc06g075510.2.1 cdna:known chromosome:SL2.40:6:43255163:43258759:-1 gene:Solyc06g075510.2 transcript:Solyc06g075510.2.1215220.0110102.5
5'     AGAATCTTGATGATGCTGCAT        3'
||||||o||||||||||||
3' TACTTCTTAGGACTACTACGACGGCACGTCTT 5'
1528Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553688-9229Solyc11g072600.1.1 cdna:known chromosome:SL2.40:11:52857365:52860247:-1 gene:Solyc11g072600.1 transcript:Solyc11g072600.1.10128802402401.5
5'     AGAATCTTGATGATGCTGCAT        3'
||||||o|||||||||||||
3' CAACTCTTAGGACTACTACGACGTCGTCTCTT 5'
1529Solanum lycopersicumTTGACAGAAGATAGAGAGCATalignmentplotGSM553688-9229Solyc04g045560.2.1 cdna:novel chromosome:SL2.40:4:33188973:33194461:1 gene:Solyc04g045560.2 transcript:Solyc04g045560.2.10799020201.5
5'     TTGACAGAAGATAGAGAGCAT        3'
||||||||||| ||||||||o
3' AGTAAACTGTCTTCTCTCTCTCGTGCTCCATT 5'
1530Solanum lycopersicumCTGAAGTGTTTGGGGGAACTCCalignmentplotGSM553688-9229Solyc06g048510.2.1 cdna:novel chromosome:SL2.40:6:27661455:27665948:1 gene:Solyc06g048510.2 transcript:Solyc06g048510.2.121080010103.5
5'     CTGAAGTGTTT-GGGGGAACTCC      3'
||o||||o||| || o|||||||
3' TCTCGATTTCATAAAACCGTCTTGAGGAAAGT 5'
1531Solanum lycopersicumTTTGGATTGAAGGGAGCTCalignmentplotGSM553688-9229Solyc01g009070.2.1 cdna:known chromosome:SL2.40:1:3075589:3080069:-1 gene:Solyc01g009070.2 transcript:Solyc01g009070.2.12967026261
5'     TTTGGATTGAAGGGAGCTC          3'
|||||| ||||||||||||
3' ACCAAAACCTCACTTCCCTCGAGGTCGAAGTA 5'
1532Solanum lycopersicumTCATCTTCATCATCATCTTTAalignmentplotGSM553688-9229Solyc12g008940.1.1 cdna:novel chromosome:SL2.40:12:2247275:2252022:-1 gene:Solyc12g008940.1 transcript:Solyc12g008940.1.129830.0110102
5'     TCATCTTCATCATCATCTTTA        3'
|||||||||||||||||o|o
3' GAGTAGTAGAAGTAGTAGTAGGAGCAGGAGCA 5'
1533Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553688-9229Solyc02g093150.2.1 cdna:known chromosome:SL2.40:2:48655673:48658630:1 gene:Solyc02g093150.2 transcript:Solyc02g093150.2.1215720157.52.5
5'     AGAATCTTGATGATGCTGCAT        3'
|||||o|||||||||||||
3' ACTCCCTTAGGACTACTACGACGTCGTCGATG 5'
1534Solanum lycopersicumTTTGGATTGAAGGGAGCTCalignmentplotGSM553688-9229Solyc06g008320.2.1 cdna:novel chromosome:SL2.40:6:2193612:2201004:-1 gene:Solyc06g008320.2 transcript:Solyc06g008320.2.1215290662
5'     TTTGGATTGAAGGGAGCTC          3'
||o||||||||o|o|o|||
3' ATGAAAGCCTAACTTTCTTTGAGCTTCGAGGC 5'
1535Solanum lycopersicumTTTGGATTGAAGGGAGCTCalignmentplotGSM553689-9230Solyc06g073640.2.1 cdna:known chromosome:SL2.40:6:41820787:41825280:-1 gene:Solyc06g073640.2 transcript:Solyc06g073640.2.10105401221221
5'     TTTGGATTGAAGGGAGCTC          3'
|||||| ||||||||||||
3' CATGAAACCTCACTTCCCTCGAGCTCGAAGAA 5'
1536Solanum lycopersicumTGATTGAGCCGTGCCAATATCalignmentplotGSM553689-9230Solyc08g078800.1.1 cdna:novel chromosome:SL2.40:8:59683241:59684665:-1 gene:Solyc08g078800.1 transcript:Solyc08g078800.1.10407092920.5
5'     TGATTGAGCCGTGCCAATATC        3'
|||||||||||o|||||||||
3' GACAACTAACTCGGCGCGGTTATAGTAAACGC 5'
1537Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553689-9230Solyc02g064960.2.1 cdna:known chromosome:SL2.40:2:30651561:30655131:1 gene:Solyc02g064960.2 transcript:Solyc02g064960.2.10174402481242.5
5'     AGAATCTTGATGATGCTGCAT        3'
|||||o|||||||||||||
3' ACTCCCTTAGGACTACTACGACGTCGTCAACG 5'
1538Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553689-9230Solyc10g084340.1.1 cdna:novel chromosome:SL2.40:10:63251955:63255101:-1 gene:Solyc10g084340.1 transcript:Solyc10g084340.1.101252045452.5
5'     AGAATCTTGATGATGCTGCAT        3'
|||||o|||||||||||||
3' AAAGGCTTAGGACTACTACGACGTCATCTCTT 5'
1539Solanum lycopersicumTGAAGCTGCCAGCATGATCTalignmentplotGSM553689-9230Solyc02g037530.2.1 cdna:known chromosome:SL2.40:2:21756443:21766699:1 gene:Solyc02g037530.2 transcript:Solyc02g037530.2.102291016180.53
5'     TGAAGCTGCCAGCATGATCT         3'
||||||||||| ||||||
3' TTTATGTTCGACGGTCGGACTAGAAACTCCCA 5'
1540Solanum lycopersicumTCGGACCAGGCTTCATTCCCCalignmentplotGSM553689-9230Solyc11g069470.1.1 cdna:novel chromosome:SL2.40:11:51150759:51156271:1 gene:Solyc11g069470.1 transcript:Solyc11g069470.1.10571028282.5
5'     TCGGACCAGGCTTCATTCCCC        3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAGC 5'
1541Solanum lycopersicumTCGCTTGGTGCAGGTCGGGACalignmentplotGSM553689-9230Solyc06g072300.2.1 cdna:known chromosome:SL2.40:6:40960724:40969540:-1 gene:Solyc06g072300.2 transcript:Solyc06g072300.2.123880.0123233
5'     TCGCTTGGTGCAGGTCGGGAC        3'
| ||||||||||| ||||||
3' AGTCAACGAACCACGTCGAGCCCTTGACCACC 5'
1542Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553689-9230Solyc09g007260.2.1 cdna:novel chromosome:SL2.40:9:856629:859952:1 gene:Solyc09g007260.2 transcript:Solyc09g007260.2.101523013132.5
5'     AGAATCTTGATGATGCTGCAT        3'
|||||o|||||||||||||
3' AATCGCTTAGGACTACTACGACGTCATCTCTT 5'
1543Solanum lycopersicumTGATTGAGCCGTGCCAATATCalignmentplotGSM553689-9230Solyc02g085600.1.1 cdna:novel chromosome:SL2.40:2:43007859:43009469:1 gene:Solyc02g085600.1 transcript:Solyc02g085600.1.125960442
5'     TGATTGAGCCGTGCCAATATC        3'
|||||||| ||||||| ||||
3' GGCAACTAACTCCGCACGGTCATAGTGTACAC 5'
1544Solanum lycopersicumTCGGACCAGGCTTCATTCCCCalignmentplotGSM553689-9230Solyc12g044410.1.1 cdna:novel chromosome:SL2.40:12:44793673:44801092:1 gene:Solyc12g044410.1 transcript:Solyc12g044410.1.105590419139.6672.5
5'     TCGGACCAGGCTTCATTCCCC        3'
o||||||||||||||||||
3' CTTAGGCCTGGTCCGAAGTAAGGTCCGTAAAC 5'
1545Solanum lycopersicumTTGACAGAAGATAGAGAGCATalignmentplotGSM553689-9230Solyc12g038520.1.1 cdna:novel chromosome:SL2.40:12:35933880:35935930:-1 gene:Solyc12g038520.1 transcript:Solyc12g038520.1.109820157.52.5
5'     TTGACAGAAGATAGAGAGCAT        3'
|||||||||| ||||||||o
3' ACTCTACTGTCTTCTCTCTCTCGTGTCGGTCT 5'
1546Solanum lycopersicumTGATTGAGCCGTGCCAATATCalignmentplotGSM553689-9230Solyc01g090950.2.1 cdna:novel chromosome:SL2.40:1:76416878:76419772:-1 gene:Solyc01g090950.2 transcript:Solyc01g090950.2.101581073730.5
5'     TGATTGAGCCGTGCCAATATC        3'
|||||||||||o|||||||||
3' GACCACTAACTCGGCGCGGTTATAGGGAACGC 5'
1547Solanum lycopersicumTGCCTGGCTCCCTGTATGCCAalignmentplotGSM553689-9230Solyc06g075150.2.1 cdna:known chromosome:SL2.40:6:43020594:43023443:1 gene:Solyc06g075150.2 transcript:Solyc06g075150.2.101502020201
5'     TGCCTGGCTCCCTGTATGCCA        3'
||||||||||||||||||||
3' TTGTACGGACCGAGGGACATACGGACGTCATT 5'
1548Solanum lycopersicumTCGGACCAGGCTTCATTCCCCalignmentplotGSM553689-9230Solyc02g024070.2.1 cdna:novel chromosome:SL2.40:2:15627267:15633567:1 gene:Solyc02g024070.2 transcript:Solyc02g024070.2.12819018182.5
5'     TCGGACCAGGCTTCATTCCCC        3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTCGA 5'
1549Solanum lycopersicumTTTGGATTGAAGGGAGCTCalignmentplotGSM553689-9230Solyc12g014120.1.1 cdna:known chromosome:SL2.40:12:4931940:4933799:-1 gene:Solyc12g014120.1 transcript:Solyc12g014120.1.124720.01772
5'     TTTGGATTGAAGGGAGCTC          3'
||||| |||||||| ||||
3' ATTAAAACCAAACTTCCCCCGAGGTAGACTAT 5'
1550Solanum lycopersicumTCGGACCAGGCTTCATTCCCCalignmentplotGSM553689-9230Solyc02g069830.2.1 cdna:novel chromosome:SL2.40:2:34234662:34242222:-1 gene:Solyc02g069830.2 transcript:Solyc02g069830.2.10629037372.5
5'     TCGGACCAGGCTTCATTCCCC        3'
o||||||||||||||| |||
3' CTAAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5'
1551Solanum lycopersicumTGACAGAAGAGAGTGAGCACAalignmentplotGSM553689-9230Solyc12g038520.1.1 cdna:novel chromosome:SL2.40:12:35933880:35935930:-1 gene:Solyc12g038520.1 transcript:Solyc12g038520.1.129810211
5'     TGACAGAAGAGAGTGAGCACA        3'
||||||||||||| |||||||
3' CTCTACTGTCTTCTCTCTCTCGTGTCGGTCTC 5'
1552Solanum lycopersicumTTGACAGAAGATAGAGAGCATalignmentplotGSM553689-9230Solyc02g077920.2.1 cdna:novel chromosome:SL2.40:2:37320931:37323107:-1 gene:Solyc02g077920.2 transcript:Solyc02g077920.2.128400660
5'     TTGACAGAAGATAGAGAGCAT        3'
|||||||||||||||||||||
3' CCTTAACTGTCTTCTATCTCTCGTACGAATTG 5'
1553Solanum lycopersicumTTGAGCCGTGCCAATATCACGalignmentplotGSM553689-9230Solyc01g090950.2.1 cdna:novel chromosome:SL2.40:1:76416878:76419772:-1 gene:Solyc01g090950.2 transcript:Solyc01g090950.2.121578060602.5
5'     TTGAGCCGTGCCAATATCACG        3'
||||||||o||||||||| |
3' CACTAACTCGGCGCGGTTATAGGGAACGCGCT 5'
1554Solanum lycopersicumTCATCTTCATCATCATCTTTAalignmentplotGSM553689-9230Solyc03g053030.1.1 cdna:novel chromosome:SL2.40:3:19757259:19759785:-1 gene:Solyc03g053030.1 transcript:Solyc03g053030.1.101085091.82.5
5'     TCATCTTCATCATCATCTTTA        3'
||||| ||||||||||| |o|
3' TAGAAGTAGTAGTAGTAGTAGCAGTAGCAGTA 5'
1555Solanum lycopersicumTGAAGCTGCCAGCATGATCTAalignmentplotGSM553689-9230Solyc08g075770.2.1 cdna:novel chromosome:SL2.40:8:57049670:57059466:-1 gene:Solyc08g075770.2 transcript:Solyc08g075770.2.1212030.01553
5'     TGAAGCTGCCAGCATGATCTA        3'
|||| ||||||o||o| ||||
3' TTGAACTT-GACGGTTGTGCGAGATCGTGAAG 5'
1556Solanum lycopersicumTCGGACCAGGCTTCATTCCCCalignmentplotGSM553689-9230Solyc08g066500.2.1 cdna:novel chromosome:SL2.40:8:52415522:52421037:-1 gene:Solyc08g066500.2 transcript:Solyc08g066500.2.105770419139.6672.5
5'     TCGGACCAGGCTTCATTCCCC        3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAAA 5'
1557Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553689-9230Solyc04g049800.2.1 cdna:novel chromosome:SL2.40:4:42714973:42717503:1 gene:Solyc04g049800.2 transcript:Solyc04g049800.2.101117012121.5
5'     AGAATCTTGATGATGCTGCAT        3'
||||||o|||||||||||||
3' CATCTCTTAGGACTACTACGACGTCTTCTTCT 5'
1558Solanum lycopersicumTTTCCAATTCCACCCATTCCTAalignmentplotGSM553689-9230Solyc06g005410.2.1 cdna:novel chromosome:SL2.40:6:421845:422623:-1 gene:Solyc06g005410.2 transcript:Solyc06g005410.2.103890.021081084
5'     TTTCCAATTCCACCCATTCCTA       3'
||||| |||||||| || || |
3' ACAAAAAGGATAAGGTGGTTACGG-TATATAT 5'
1559Solanum lycopersicumTTGGATTGAAGGGAGCTCTalignmentplotGSM553689-9230Solyc05g012840.1.1 cdna:novel chromosome:SL2.40:5:5987496:5988167:-1 gene:Solyc05g012840.1 transcript:Solyc05g012840.1.106260.03843.5
5'     TTGGATTGAAGGGAGCTCT          3'
o||||o||||||| | ||o
3' CTTTGACCTGACTTCCC-CAAGGGATACTCTT 5'
1560Solanum lycopersicumTTGGATTGAAGGGAGCTCTalignmentplotGSM553689-9230Solyc02g077250.2.1 cdna:known chromosome:SL2.40:2:36822112:36823838:-1 gene:Solyc02g077250.2 transcript:Solyc02g077250.2.109080.02843.5
5'     TTGGATTGAAGGGAGCTCT          3'
o||||o||||||| | ||o
3' CTTTGACCTGACTTCCC-CAAGGGACACTCTT 5'
1561Solanum lycopersicumTCATCTTCATCATCATCTTTAalignmentplotGSM553689-9230Solyc01g020410.1.1 cdna:novel chromosome:SL2.40:1:30103231:30103620:1 gene:Solyc01g020410.1 transcript:Solyc01g020410.1.122390.0240.031251.5
5'     TCATCTTCATCATCATCTTTA        3'
||||| |||||||||||||o|
3' TAGTAGTAGTAGTAGTAGTAGAAGTAGTAGTA 5'
1562Solanum lycopersicumTGCCTGGCTCCCTGTATGCCAalignmentplotGSM553689-9230Solyc11g013470.1.1 cdna:novel chromosome:SL2.40:11:6496469:6499311:-1 gene:Solyc11g013470.1 transcript:Solyc11g013470.1.1055401651651.5
5'     TGCCTGGCTCCCTGTATGCCA        3'
||||||||||||||o|||||
3' TAGTACGGACCGAGGGACGTACGGGCGTCCTT 5'
1563Solanum lycopersicumTTGACAGAAGATAGAGAGCATalignmentplotGSM553689-9230Solyc05g012040.2.1 cdna:novel chromosome:SL2.40:5:5268986:5273711:1 gene:Solyc05g012040.2 transcript:Solyc05g012040.2.1214300772
5'     TTGACAGAAGATAGAGAGCAT        3'
o|||||||||| ||||||||o
3' ACCCGACTGTCTTCTCTCTCTCGTGTTCTCCT 5'
1564Solanum lycopersicumTGACAGAAGAGAGTGAGCACAalignmentplotGSM553689-9230Solyc07g062980.2.1 cdna:novel chromosome:SL2.40:7:62823040:62824209:-1 gene:Solyc07g062980.2 transcript:Solyc07g062980.2.10448051512.5
5'     TGACAGAAGAGAGTGAGCACA        3'
||||||||||||||o||||
3' CCCGACTGTCTTCTCTCATTCGTAAAGTAGGT 5'
1565Solanum lycopersicumTCATCTTCATCATCATCTTTAalignmentplotGSM553689-9230Solyc07g065800.2.1 cdna:novel chromosome:SL2.40:7:64642057:64643753:-1 gene:Solyc07g065800.2 transcript:Solyc07g065800.2.102530.0212122.5
5'     TCATCTTCATCATCATCTTTA        3'
||||||||||||||||| |o
3' ACATAGTAGAAGTAGTAGTAGCAGCAGTAGTA 5'
1566Solanum lycopersicumTTGACAGAAGATAGAGAGCATalignmentplotGSM553689-9230Solyc05g015510.2.1 cdna:novel chromosome:SL2.40:5:10767268:10772201:-1 gene:Solyc05g015510.2 transcript:Solyc05g015510.2.102962092921.5
5'     TTGACAGAAGATAGAGAGCAT        3'
||||||||||| ||||||||o
3' AATCAACTGTCTTCTCTCTCTCGTGCTCCTTT 5'
1567Solanum lycopersicumTAGCCAAGGATGACTTGCCTGalignmentplotGSM553689-9230Solyc01g087240.2.1 cdna:novel chromosome:SL2.40:1:73938193:73944527:1 gene:Solyc01g087240.2 transcript:Solyc01g087240.2.10117101411412.5
5'     TAGCCAAGGATGACTTGCCTG        3'
|||||||o|||| |||||||
3' TTGGTTCGGTTCTTACTTAACGGACTCGTATC 5'
1568Solanum lycopersicumTTGACAGAAGATAGAGAGCATalignmentplotGSM553689-9230Solyc10g078700.1.1 cdna:novel chromosome:SL2.40:10:59754038:59758728:-1 gene:Solyc10g078700.1 transcript:Solyc10g078700.1.10775067671.5
5'     TTGACAGAAGATAGAGAGCAT        3'
||||||||||| ||||||||o
3' GCTAAACTGTCTTCTCTCTCTCGTGGTGAACT 5'
1569Solanum lycopersicumTCGATAAACCTCTGCATCCAGalignmentplotGSM553689-9230Solyc10g005130.2.1 cdna:novel chromosome:SL2.40:10:111879:125251:1 gene:Solyc10g005130.2 transcript:Solyc10g005130.2.10325901291291
5'    TCGATAA-ACCTCTGCATCCAG        3'
||||||| ||||||||||||||
3' TGTAGCTATTATGGAGACGTAGGTCGAGCAAC 5'
1570Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553689-9230Solyc03g044300.2.1 cdna:known chromosome:SL2.40:3:12742062:12746690:1 gene:Solyc03g044300.2 transcript:Solyc03g044300.2.10138401781782.5
5'     AGAATCTTGATGATGCTGCAT        3'
|||||o|||||||||||||
3' ACCCCCTTAGGACTACTACGACGTCGTCAACG 5'
1571Solanum lycopersicumTGAAGCTGCCAGCATGATCTalignmentplotGSM553689-9230Solyc03g031970.2.1 cdna:known chromosome:SL2.40:3:8739906:8747501:1 gene:Solyc03g031970.2 transcript:Solyc03g031970.2.102294016180.53
5'     TGAAGCTGCCAGCATGATCT         3'
||||||||||| ||||||
3' TTTATGTTCGACGGTCGGACTAGAAACTCCCA 5'
1572Solanum lycopersicumTAGCCAAGGATGACTTGCCTGalignmentplotGSM553689-9230Solyc01g006930.2.1 cdna:novel chromosome:SL2.40:1:1506539:1511917:1 gene:Solyc01g006930.2 transcript:Solyc01g006930.2.1013280.0139393.5
5'     TAGCCAAGGATGACTTGCCTG        3'
|||||||||||| o||||oo
3' ACGATTCGGTTCCTACTTGACGGGTACTATCG 5'
1573Solanum lycopersicumCTAGATTCACGCACAAGCTCGalignmentplotGSM553689-9230Solyc02g069260.2.1 cdna:novel chromosome:SL2.40:2:33782147:33788905:1 gene:Solyc02g069260.2 transcript:Solyc02g069260.2.10326001261262.5
5'     CTAGATTCACGCACAAGCTCG        3'
|||||||||||||||o|||
3' GGGTAATCTAAGTGCGTGTTTGAGGAAACGTT 5'
1574Solanum lycopersicumTAGCCAAGGATGACTTGCCTGalignmentplotGSM553689-9230Solyc08g062210.2.1 cdna:novel chromosome:SL2.40:8:47964141:47973284:1 gene:Solyc08g062210.2 transcript:Solyc08g062210.2.101111080802.5
5'     TAGCCAAGGATGACTTGCCTG        3'
||||||||||||| o|||| |
3' TTGTATCGGTTCCTACTTGACGG-CTAATAGG 5'
1575Solanum lycopersicumTAGCCAAGGATGACTTGCCTAalignmentplotGSM553689-9230Solyc08g062210.2.1 cdna:novel chromosome:SL2.40:8:47964141:47973284:1 gene:Solyc08g062210.2 transcript:Solyc08g062210.2.101111080802.5
5'     TAGCCAAGGATGACTTGCCTA        3'
||||||||||||| o|||| |
3' TTGTATCGGTTCCTACTTGACGGCTAATAGGT 5'
1576Solanum lycopersicumTGCCTGGCTCCCTGTATGCCAalignmentplotGSM553689-9230Solyc09g007810.2.1 cdna:novel chromosome:SL2.40:9:1332643:1335760:-1 gene:Solyc09g007810.2 transcript:Solyc09g007810.2.121608015150.5
5'     TGCCTGGCTCCCTGTATGCCA        3'
||||||||||||||o||||||
3' TCGTACGGACCGAGGGACGTACGGTCGTCCCC 5'
1577Solanum lycopersicumGTTCTATCTTCTCTTCCAGAalignmentplotGSM553689-9230Solyc04g015640.1.1 cdna:novel chromosome:SL2.40:4:5929168:5929871:-1 gene:Solyc04g015640.1 transcript:Solyc04g015640.1.112800.04443.5
5'     GTTCTATCTTCTCTTCCAGA         3'
|||| ||||| ||||| |o|
3' TGTTCAAGTTAGAAAAGAAGTTTTAGGGGATA 5'
1578Solanum lycopersicumTTGACAGAAGATAGAGAGCATalignmentplotGSM553689-9230Solyc03g114850.2.1 cdna:novel chromosome:SL2.40:3:58796755:58802237:1 gene:Solyc03g114850.2 transcript:Solyc03g114850.2.1214820157.52
5'     TTGACAGAAGATAGAGAGCAT        3'
|||||||||| |||||||||
3' ACTCTACTGTCTTCTCTCTCTCGTAACGACCT 5'
1579Solanum lycopersicumTGCCTGGCTCCCTGTATGCCAalignmentplotGSM553689-9230Solyc11g069500.1.1 cdna:known chromosome:SL2.40:11:51188434:51191569:-1 gene:Solyc11g069500.1 transcript:Solyc11g069500.1.101313043431
5'     TGCCTGGCTCCCTGTATGCCA        3'
||||||||||||||||||||
3' TCGTACGGACCGAGGGACATACGGACGTCACT 5'
1580Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553689-9230Solyc11g072600.1.1 cdna:known chromosome:SL2.40:11:52857365:52860247:-1 gene:Solyc11g072600.1 transcript:Solyc11g072600.1.10128801831831.5
5'     AGAATCTTGATGATGCTGCAT        3'
||||||o|||||||||||||
3' CAACTCTTAGGACTACTACGACGTCGTCTCTT 5'
1581Solanum lycopersicumTTGACAGAAGATAGAGAGCATalignmentplotGSM553689-9230Solyc04g045560.2.1 cdna:novel chromosome:SL2.40:4:33188973:33194461:1 gene:Solyc04g045560.2 transcript:Solyc04g045560.2.10799012121.5
5'     TTGACAGAAGATAGAGAGCAT        3'
||||||||||| ||||||||o
3' AGTAAACTGTCTTCTCTCTCTCGTGCTCCATT 5'
1582Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553689-9230Solyc02g093150.2.1 cdna:known chromosome:SL2.40:2:48655673:48658630:1 gene:Solyc02g093150.2 transcript:Solyc02g093150.2.10157202481242.5
5'     AGAATCTTGATGATGCTGCAT        3'
|||||o|||||||||||||
3' ACTCCCTTAGGACTACTACGACGTCGTCGATG 5'
1583Solanum lycopersicumTTGGATTGAAGGGAGCTCTalignmentplotGSM553689-9230Solyc08g048390.1.1 cdna:known chromosome:SL2.40:8:39810608:39811771:1 gene:Solyc08g048390.1 transcript:Solyc08g048390.1.1010250.0422223.5
5'     TTGGATTGAAGGGAGCTCT          3'
|||||o||||||| |o|o
3' TCTTAACCTGACTTCCCAGGGGGATAACTTTG 5'
1584Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553689-9230Solyc06g075510.2.1 cdna:known chromosome:SL2.40:6:43255163:43258759:-1 gene:Solyc06g075510.2 transcript:Solyc06g075510.2.121522010102.5
5'     AGAATCTTGATGATGCTGCAT        3'
||||||o||||||||||||
3' TACTTCTTAGGACTACTACGACGGCACGTCTT 5'
1585Solanum lycopersicumCTGAAGTGTTTGGGGGAACTCCalignmentplotGSM553689-9230Solyc09g082860.2.1 cdna:novel chromosome:SL2.40:9:63941988:63946072:1 gene:Solyc09g082860.2 transcript:Solyc09g082860.2.124880.0111113.5
5'     CTGAAGTGTTTGGGGGAACTCC       3'
||||| ||||||o|||||||
3' ACTTTACTTCTCAAACCTCCTTGAGCCTAAGA 5'
1586Solanum lycopersicumTTTGGATTGAAGGGAGCTCalignmentplotGSM553689-9230Solyc01g009070.2.1 cdna:known chromosome:SL2.40:1:3075589:3080069:-1 gene:Solyc01g009070.2 transcript:Solyc01g009070.2.129670441
5'     TTTGGATTGAAGGGAGCTC          3'
|||||| ||||||||||||
3' ACCAAAACCTCACTTCCCTCGAGGTCGAAGTA 5'
1587Solanum lycopersicumTTTGGATTGAAGGGAGCTCalignmentplotGSM553689-9230Solyc10g019260.1.1 cdna:novel chromosome:SL2.40:10:12672810:12674303:1 gene:Solyc10g019260.1 transcript:Solyc10g019260.1.121500991.5
5'     TTTGGATTGAAGGGAGCTC          3'
|||||||o||| |||||||
3' CCGGAAACCTAGCTTACCTCGAGGTTAGAGAA 5'
1588Solanum lycopersicumTGATTGAGCCGTGCCAATATCalignmentplotGSM553690-9231Solyc08g078800.1.1 cdna:novel chromosome:SL2.40:8:59683241:59684665:-1 gene:Solyc08g078800.1 transcript:Solyc08g078800.1.10407020200.5
5'     TGATTGAGCCGTGCCAATATC        3'
|||||||||||o|||||||||
3' GACAACTAACTCGGCGCGGTTATAGTAAACGC 5'
1589Solanum lycopersicumTCGCTTGGTGCAGGTCGGGACalignmentplotGSM553690-9231Solyc06g072300.2.1 cdna:known chromosome:SL2.40:6:40960724:40969540:-1 gene:Solyc06g072300.2 transcript:Solyc06g072300.2.123880.0133333
5'     TCGCTTGGTGCAGGTCGGGAC        3'
| ||||||||||| ||||||
3' AGTCAACGAACCACGTCGAGCCCTTGACCACC 5'
1590Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553690-9231Solyc02g064960.2.1 cdna:known chromosome:SL2.40:2:30651561:30655131:1 gene:Solyc02g064960.2 transcript:Solyc02g064960.2.101744044222.5
5'     AGAATCTTGATGATGCTGCAT        3'
|||||o|||||||||||||
3' ACTCCCTTAGGACTACTACGACGTCGTCAACG 5'
1591Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553690-9231Solyc10g084340.1.1 cdna:novel chromosome:SL2.40:10:63251955:63255101:-1 gene:Solyc10g084340.1 transcript:Solyc10g084340.1.101252028282.5
5'     AGAATCTTGATGATGCTGCAT        3'
|||||o|||||||||||||
3' AAAGGCTTAGGACTACTACGACGTCATCTCTT 5'
1592Solanum lycopersicumACATCATCATCATCATCATAAalignmentplotGSM553690-9231Solyc07g061900.2.1 cdna:novel chromosome:SL2.40:7:62014111:62015965:1 gene:Solyc07g061900.2 transcript:Solyc07g061900.2.128860.05442
5'     ACATCATCATCATCATCATAA        3'
|||||||||||||||||| |
3' GGTCAGTAGTAGTAGTAGTAGTAGTAAAGGCA 5'
1593Solanum lycopersicumTGAAGCTGCCAGCATGATCTalignmentplotGSM553690-9231Solyc02g037530.2.1 cdna:known chromosome:SL2.40:2:21756443:21766699:1 gene:Solyc02g037530.2 transcript:Solyc02g037530.2.1022910136683
5'     TGAAGCTGCCAGCATGATCT         3'
||||||||||| ||||||
3' TTTATGTTCGACGGTCGGACTAGAAACTCCCA 5'
1594Solanum lycopersicumTTGAGTGCAGCGTTGATGACalignmentplotGSM553690-9231Solyc05g006100.2.1 cdna:novel chromosome:SL2.40:5:824706:827085:1 gene:Solyc05g006100.2 transcript:Solyc05g006100.2.123620.01552.5
5'     TTGAGTGCAGCGTTGATGAC         3'
o| |||||||||||| ||||
3' TTGGGAGTCACGTCGCAAC-ACTGTCTCTACT 5'
1595Solanum lycopersicumTTGAGCCGTGCCAATATCACGalignmentplotGSM553690-9231Solyc08g078800.1.1 cdna:novel chromosome:SL2.40:8:59683241:59684665:-1 gene:Solyc08g078800.1 transcript:Solyc08g078800.1.12404011112.5
5'     TTGAGCCGTGCCAATATCACG        3'
||||||||o||||||||||
3' AACTAACTCGGCGCGGTTATAGTAAACGCGCA 5'
1596Solanum lycopersicumTCGGACCAGGCTTCATTCCCCalignmentplotGSM553690-9231Solyc11g069470.1.1 cdna:novel chromosome:SL2.40:11:51150759:51156271:1 gene:Solyc11g069470.1 transcript:Solyc11g069470.1.10571032322.5
5'     TCGGACCAGGCTTCATTCCCC        3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAGC 5'
1597Solanum lycopersicumTTAATATGTTGTGTTTGTTGTalignmentplotGSM553690-9231Solyc01g090690.2.1 cdna:novel chromosome:SL2.40:1:76088526:76099238:1 gene:Solyc01g090690.2 transcript:Solyc01g090690.2.1223080.05883
5'     TTAATATGTTGTGTTTGTTGT        3'
||||o| ||||o|||||| ||
3' ACGCAATTGTTCAACGCAAACA-CATAGAGGA 5'
1598Solanum lycopersicumTCGGACCAGGCTTCATTCCCCalignmentplotGSM553690-9231Solyc12g044410.1.1 cdna:novel chromosome:SL2.40:12:44793673:44801092:1 gene:Solyc12g044410.1 transcript:Solyc12g044410.1.105590515171.6672.5
5'     TCGGACCAGGCTTCATTCCCC        3'
o||||||||||||||||||
3' CTTAGGCCTGGTCCGAAGTAAGGTCCGTAAAC 5'
1599Solanum lycopersicumTTTGGATTGAAGGGAGCTCalignmentplotGSM553690-9231Solyc06g073640.2.1 cdna:known chromosome:SL2.40:6:41820787:41825280:-1 gene:Solyc06g073640.2 transcript:Solyc06g073640.2.1210540441
5'     TTTGGATTGAAGGGAGCTC          3'
|||||| ||||||||||||
3' CATGAAACCTCACTTCCCTCGAGCTCGAAGAA 5'
1600Solanum lycopersicumTCGGACCAGGCTTCATTCCCCalignmentplotGSM553690-9231Solyc02g024070.2.1 cdna:novel chromosome:SL2.40:2:15627267:15633567:1 gene:Solyc02g024070.2 transcript:Solyc02g024070.2.10819011112.5
5'     TCGGACCAGGCTTCATTCCCC        3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTCGA 5'
1601Solanum lycopersicumTTGAGCCGTGCCAATATCACGalignmentplotGSM553690-9231Solyc01g090950.2.1 cdna:novel chromosome:SL2.40:1:76416878:76419772:-1 gene:Solyc01g090950.2 transcript:Solyc01g090950.2.10157801631632.5
5'     TTGAGCCGTGCCAATATCACG        3'
||||||||o||||||||| |
3' CACTAACTCGGCGCGGTTATAGGGAACGCGCT 5'
1602Solanum lycopersicumTGCCTGGCTCCCTGTATGCCAalignmentplotGSM553690-9231Solyc06g075150.2.1 cdna:known chromosome:SL2.40:6:43020594:43023443:1 gene:Solyc06g075150.2 transcript:Solyc06g075150.2.101502040401
5'     TGCCTGGCTCCCTGTATGCCA        3'
||||||||||||||||||||
3' TTGTACGGACCGAGGGACATACGGACGTCATT 5'
1603Solanum lycopersicumTCGGACCAGGCTTCATTCCCCalignmentplotGSM553690-9231Solyc02g069830.2.1 cdna:novel chromosome:SL2.40:2:34234662:34242222:-1 gene:Solyc02g069830.2 transcript:Solyc02g069830.2.10629032322.5
5'     TCGGACCAGGCTTCATTCCCC        3'
o||||||||||||||| |||
3' CTAAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5'
1604Solanum lycopersicumCTGAAGTGTTTGGGGGAACTCCalignmentplotGSM553690-9231Solyc04g054730.2.1 cdna:novel chromosome:SL2.40:4:52246216:52251232:-1 gene:Solyc04g054730.2 transcript:Solyc04g054730.2.11311011113.5
5'     CTGAAGTGTTTGGGGGAACTCC       3'
|||||||||||||o|||| |
3' CACAAACTTCACAAACCCTCTTGTGTCTTTCA 5'
1605Solanum lycopersicumTCATCTTCATCATCATCTTTAalignmentplotGSM553690-9231Solyc01g057520.2.1 cdna:novel chromosome:SL2.40:1:54163130:54174043:1 gene:Solyc01g057520.2 transcript:Solyc01g057520.2.1230520.01441.5
5'     TCATCTTCATCATCATCTTTA        3'
||||| |||||||||||||o|
3' CAGGAGTAGTAGTAGTAGTAGAAGTCAAAGGA 5'
1606Solanum lycopersicumTGATTGAGCCGTGCCAATATCalignmentplotGSM553690-9231Solyc01g090950.2.1 cdna:novel chromosome:SL2.40:1:76416878:76419772:-1 gene:Solyc01g090950.2 transcript:Solyc01g090950.2.1215810550.5
5'     TGATTGAGCCGTGCCAATATC        3'
|||||||||||o|||||||||
3' GACCACTAACTCGGCGCGGTTATAGGGAACGC 5'
1607Solanum lycopersicumTCGGACCAGGCTTCATTCCCCalignmentplotGSM553690-9231Solyc08g066500.2.1 cdna:novel chromosome:SL2.40:8:52415522:52421037:-1 gene:Solyc08g066500.2 transcript:Solyc08g066500.2.105770515171.6672.5
5'     TCGGACCAGGCTTCATTCCCC        3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAAA 5'
1608Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553690-9231Solyc04g049800.2.1 cdna:novel chromosome:SL2.40:4:42714973:42717503:1 gene:Solyc04g049800.2 transcript:Solyc04g049800.2.101117015151.5
5'     AGAATCTTGATGATGCTGCAT        3'
||||||o|||||||||||||
3' CATCTCTTAGGACTACTACGACGTCTTCTTCT 5'
1609Solanum lycopersicumTTTGGATTGAAGGGAGCTCalignmentplotGSM553690-9231Solyc12g014120.1.1 cdna:known chromosome:SL2.40:12:4931940:4933799:-1 gene:Solyc12g014120.1 transcript:Solyc12g014120.1.124720.03442
5'     TTTGGATTGAAGGGAGCTC          3'
||||| |||||||| ||||
3' ATTAAAACCAAACTTCCCCCGAGGTAGACTAT 5'
1610Solanum lycopersicumTTGACAGAAGATAGAGAGCATalignmentplotGSM553690-9231Solyc02g077920.2.1 cdna:novel chromosome:SL2.40:2:37320931:37323107:-1 gene:Solyc02g077920.2 transcript:Solyc02g077920.2.12840030300
5'     TTGACAGAAGATAGAGAGCAT        3'
|||||||||||||||||||||
3' CCTTAACTGTCTTCTATCTCTCGTACGAATTG 5'
1611Solanum lycopersicumTTTCCAATTCCACCCATTCCTAalignmentplotGSM553690-9231Solyc06g005410.2.1 cdna:novel chromosome:SL2.40:6:421845:422623:-1 gene:Solyc06g005410.2 transcript:Solyc06g005410.2.10389011114
5'     TTTCCAATTCCACCCATTCCTA       3'
||||| |||||||| || || |
3' ACAAAAAGGATAAGGTGGTTACGG-TATATAT 5'
1612Solanum lycopersicumTTGGATTGAAGGGAGCTCTalignmentplotGSM553690-9231Solyc05g012840.1.1 cdna:novel chromosome:SL2.40:5:5987496:5988167:-1 gene:Solyc05g012840.1 transcript:Solyc05g012840.1.116260.02423.5
5'     TTGGATTGAAGGGAGCTCT          3'
o||||o||||||| | ||o
3' CTTTGACCTGACTTCCC-CAAGGGATACTCTT 5'
1613Solanum lycopersicumTTTTTGAAGAGTTCGAGCAACalignmentplotGSM553690-9231Solyc02g089930.2.1 cdna:novel chromosome:SL2.40:2:46180875:46185136:-1 gene:Solyc02g089930.2 transcript:Solyc02g089930.2.129580.03553
5'     TTTTTGAAGAGTTCGAGCAAC        3'
|| |||||||||o|o|||| |
3' AGGTAATAACTTCTCAGGTTCGT-GAGATCTG 5'
1614Solanum lycopersicumTGAAGCTGCCAGCATGATCTAalignmentplotGSM553690-9231Solyc06g036780.2.1 cdna:novel chromosome:SL2.40:6:24511239:24528169:1 gene:Solyc06g036780.2 transcript:Solyc06g036780.2.129080.05773
5'     TGAAGCTGCCAGCATGATCTA        3'
|||||||o|||||| o||| |
3' ATCAACTTCGATGGTCGTCTTAG-TGTGGTTG 5'
1615Solanum lycopersicumTTGGATTGAAGGGAGCTCTalignmentplotGSM553690-9231Solyc02g077250.2.1 cdna:known chromosome:SL2.40:2:36822112:36823838:-1 gene:Solyc02g077250.2 transcript:Solyc02g077250.2.119080.02423.5
5'     TTGGATTGAAGGGAGCTCT          3'
o||||o||||||| | ||o
3' CTTTGACCTGACTTCCC-CAAGGGACACTCTT 5'
1616Solanum lycopersicumACATCATCATCATCATCATAAalignmentplotGSM553690-9231Solyc03g053030.1.1 cdna:novel chromosome:SL2.40:3:19757259:19759785:-1 gene:Solyc03g053030.1 transcript:Solyc03g053030.1.127330.0570.4666672
5'     ACATCATCATCATCATCATAA        3'
|||||||||||||||||| |
3' CAGCAGTAGTAGTAGTAGTAGTAGTAGTAGTA 5'
1617Solanum lycopersicumTGCCTGGCTCCCTGTATGCCAalignmentplotGSM553690-9231Solyc11g013470.1.1 cdna:novel chromosome:SL2.40:11:6496469:6499311:-1 gene:Solyc11g013470.1 transcript:Solyc11g013470.1.1055404734731.5
5'     TGCCTGGCTCCCTGTATGCCA        3'
||||||||||||||o|||||
3' TAGTACGGACCGAGGGACGTACGGGCGTCCTT 5'
1618Solanum lycopersicumTTTGGATTGAAGGGAGCTCalignmentplotGSM553690-9231Solyc01g009070.2.1 cdna:known chromosome:SL2.40:1:3075589:3080069:-1 gene:Solyc01g009070.2 transcript:Solyc01g009070.2.10967010101
5'     TTTGGATTGAAGGGAGCTC          3'
|||||| ||||||||||||
3' ACCAAAACCTCACTTCCCTCGAGGTCGAAGTA 5'
1619Solanum lycopersicumTTGACAGAAGATAGAGAGCATalignmentplotGSM553690-9231Solyc05g015510.2.1 cdna:novel chromosome:SL2.40:5:10767268:10772201:-1 gene:Solyc05g015510.2 transcript:Solyc05g015510.2.102962050501.5
5'     TTGACAGAAGATAGAGAGCAT        3'
||||||||||| ||||||||o
3' AATCAACTGTCTTCTCTCTCTCGTGCTCCTTT 5'
1620Solanum lycopersicumTAGCCAAGGATGACTTGCCTGalignmentplotGSM553690-9231Solyc01g087240.2.1 cdna:novel chromosome:SL2.40:1:73938193:73944527:1 gene:Solyc01g087240.2 transcript:Solyc01g087240.2.10117102452452.5
5'     TAGCCAAGGATGACTTGCCTG        3'
|||||||o|||| |||||||
3' TTGGTTCGGTTCTTACTTAACGGACTCGTATC 5'
1621Solanum lycopersicumTTGACAGAAGATAGAGAGCATalignmentplotGSM553690-9231Solyc10g078700.1.1 cdna:novel chromosome:SL2.40:10:59754038:59758728:-1 gene:Solyc10g078700.1 transcript:Solyc10g078700.1.10775065651.5
5'     TTGACAGAAGATAGAGAGCAT        3'
||||||||||| ||||||||o
3' GCTAAACTGTCTTCTCTCTCTCGTGGTGAACT 5'
1622Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553690-9231Solyc03g044300.2.1 cdna:known chromosome:SL2.40:3:12742062:12746690:1 gene:Solyc03g044300.2 transcript:Solyc03g044300.2.101384057572.5
5'     AGAATCTTGATGATGCTGCAT        3'
|||||o|||||||||||||
3' ACCCCCTTAGGACTACTACGACGTCGTCAACG 5'
1623Solanum lycopersicumTGAAGCTGCCAGCATGATCTalignmentplotGSM553690-9231Solyc03g031970.2.1 cdna:known chromosome:SL2.40:3:8739906:8747501:1 gene:Solyc03g031970.2 transcript:Solyc03g031970.2.1022940136683
5'     TGAAGCTGCCAGCATGATCT         3'
||||||||||| ||||||
3' TTTATGTTCGACGGTCGGACTAGAAACTCCCA 5'
1624Solanum lycopersicumTAGCCAAGGATGACTTGCCTGalignmentplotGSM553690-9231Solyc01g006930.2.1 cdna:novel chromosome:SL2.40:1:1506539:1511917:1 gene:Solyc01g006930.2 transcript:Solyc01g006930.2.101328027273.5
5'     TAGCCAAGGATGACTTGCCTG        3'
|||||||||||| o||||oo
3' ACGATTCGGTTCCTACTTGACGGGTACTATCG 5'
1625Solanum lycopersicumCTAGATTCACGCACAAGCTCGalignmentplotGSM553690-9231Solyc02g069260.2.1 cdna:novel chromosome:SL2.40:2:33782147:33788905:1 gene:Solyc02g069260.2 transcript:Solyc02g069260.2.10326004254252.5
5'     CTAGATTCACGCACAAGCTCG        3'
|||||||||||||||o|||
3' GGGTAATCTAAGTGCGTGTTTGAGGAAACGTT 5'
1626Solanum lycopersicumTAGCCAAGGATGACTTGCCTGalignmentplotGSM553690-9231Solyc08g062210.2.1 cdna:novel chromosome:SL2.40:8:47964141:47973284:1 gene:Solyc08g062210.2 transcript:Solyc08g062210.2.101111040402.5
5'     TAGCCAAGGATGACTTGCCTG        3'
||||||||||||| o|||| |
3' TTGTATCGGTTCCTACTTGACGG-CTAATAGG 5'
1627Solanum lycopersicumTAGCCAAGGATGACTTGCCTAalignmentplotGSM553690-9231Solyc08g062210.2.1 cdna:novel chromosome:SL2.40:8:47964141:47973284:1 gene:Solyc08g062210.2 transcript:Solyc08g062210.2.101111040402.5
5'     TAGCCAAGGATGACTTGCCTA        3'
||||||||||||| o|||| |
3' TTGTATCGGTTCCTACTTGACGGCTAATAGGT 5'
1628Solanum lycopersicumTGACAGAAGAGAGTGAGCACAalignmentplotGSM553690-9231Solyc05g012040.2.1 cdna:novel chromosome:SL2.40:5:5268986:5273711:1 gene:Solyc05g012040.2 transcript:Solyc05g012040.2.1214290221
5'     TGACAGAAGAGAGTGAGCACA        3'
||||||||||||| |||||||
3' CCCGACTGTCTTCTCTCTCTCGTGTTCTCCTC 5'
1629Solanum lycopersicumTTGACAGAAGATAGAGAGCATalignmentplotGSM553690-9231Solyc05g012040.2.1 cdna:novel chromosome:SL2.40:5:5268986:5273711:1 gene:Solyc05g012040.2 transcript:Solyc05g012040.2.1214300.01222
5'     TTGACAGAAGATAGAGAGCAT        3'
o|||||||||| ||||||||o
3' ACCCGACTGTCTTCTCTCTCTCGTGTTCTCCT 5'
1630Solanum lycopersicumCTGAAGTGTTTGGGGGAACTCCalignmentplotGSM553690-9231Solyc09g082860.2.1 cdna:novel chromosome:SL2.40:9:63941988:63946072:1 gene:Solyc09g082860.2 transcript:Solyc09g082860.2.114880773.5
5'     CTGAAGTGTTTGGGGGAACTCC       3'
||||| ||||||o|||||||
3' ACTTTACTTCTCAAACCTCCTTGAGCCTAAGA 5'
1631Solanum lycopersicumTCGATAAACCTCTGCATCCAGalignmentplotGSM553690-9231Solyc10g005130.2.1 cdna:novel chromosome:SL2.40:10:111879:125251:1 gene:Solyc10g005130.2 transcript:Solyc10g005130.2.1232590771
5'    TCGATAA-ACCTCTGCATCCAG        3'
||||||| ||||||||||||||
3' TGTAGCTATTATGGAGACGTAGGTCGAGCAAC 5'
1632Solanum lycopersicumTGCCTGGCTCCCTGTATGCCAalignmentplotGSM553690-9231Solyc11g069500.1.1 cdna:known chromosome:SL2.40:11:51188434:51191569:-1 gene:Solyc11g069500.1 transcript:Solyc11g069500.1.101313028281
5'     TGCCTGGCTCCCTGTATGCCA        3'
||||||||||||||||||||
3' TCGTACGGACCGAGGGACATACGGACGTCACT 5'
1633Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553690-9231Solyc11g072600.1.1 cdna:known chromosome:SL2.40:11:52857365:52860247:-1 gene:Solyc11g072600.1 transcript:Solyc11g072600.1.101288028281.5
5'     AGAATCTTGATGATGCTGCAT        3'
||||||o|||||||||||||
3' CAACTCTTAGGACTACTACGACGTCGTCTCTT 5'
1634Solanum lycopersicumAGAATCTTGATGATGCTGCATalignmentplotGSM553690-9231Solyc02g093150.2.1 cdna:known chromosome:SL2.40:2:48655673:48658630:1 gene:Solyc02g093150.2 transcript:Solyc02g093150.2.101572044222.5
5'     AGAATCTTGATGATGCTGCAT        3'
|||||o|||||||||||||
3' ACTCCCTTAGGACTACTACGACGTCGTCGATG 5'
1635Solanum lycopersicumTCATCTTCATCATCATCTTTAalignmentplotGSM553690-9231Solyc11g071910.1.1 cdna:novel chromosome:SL2.40:11:52312893:52321825:1 gene:Solyc11g071910.1 transcript:Solyc11g071910.1.1015080.0311112.5
5'     TCATCTTCATCATCATCTTTA        3'
|||||o||||| |||||o|o|
3' TAGGAGTAGGAGTAGGAGTAGGAGTAGCAGCA 5'
1636Triticum aestivumACTCGTCCTCTTCCTCTTCCTalignmentplotGSM911923gi|241985460|gb|AK332721.1|AK332721 HTC Triticum aestivum cDNA, clone: WT004_L07, cultivar: Chinese Spring.2500.04772
5'    ACTCG-TCCTCTTCCTCTTCCT        3'
||||| ||| ||||||||||||
3' GGCTGAGCTAGGCGAAGGAGAAGGAGAAGGAG 5'
1637Triticum aestivumCTACTCCCTCCGTTCGAAAalignmentplotGSM911923gi|241990229|gb|AK330571.1|AK330571 HTC Triticum aestivum cDNA, clone: SET4_M12, cultivar: Chinese Spring.22050.01332
5'     CTACTCCCTCCGTTCGAAA          3'
||||||| |||||||| ||
3' TATAGATGAGGAAGGCAAGCCTTAATGAACAG 5'
1638Triticum aestivumTGAAGCTGACAGCATGATCTAalignmentplotGSM911923gi|241983819|gb|AK331761.1|AK331761 HTC Triticum aestivum cDNA, clone: WT002_E17, cultivar: Chinese Spring.28750.05883
5'     TGAAGCTGACAGCATGATCTA        3'
|o||| |||||||||o||| |
3' TGAAATTTCTACTGTCGTATTAG-TCCTCCTA 5'
1639Triticum aestivumTTGAGCCGTGCCAATATCACGalignmentplotGSM911923gi|241986925|gb|AK334186.1|AK334186 HTC Triticum aestivum cDNA, clone: WT009_E16, cultivar: Chinese Spring.011870190319032
5'     TTGAGCCGTGCCAATATCACG        3'
||||||||o||||||||| |o
3' CACTAACTCGGCGCGGTTATAGAGTGCGCGCG 5'
1640Triticum aestivumCGGTTGGGCTGTATGATGGCGAalignmentplotGSM911923gi|21736|gb|X07780.1|X07780 PLN Wheat mRNA for fructose-1,6-bisphosphatase (EC 3.1.3.11).26770333
5'     CGGTTGGGCTGTATGATGGCGA       3'
||| ||||||||| |||| |||
3' AGCAGCCTACCCGACAT-CTACGGCTTCTACC 5'
1641Triticum aestivumTCCGGAGGGATTCCCTCCTTGalignmentplotGSM911923gi|32351003|gb|AY290730.1|AY290730 PLN Triticum aestivum ubiquitin-like mRNA, partial sequence.2272038382
5'     TCCGGAGGGATTCCCTCCTTG        3'
||||| ||||| |||||||||
3' GACCAGGCCGCCCTACGGGAGGAACAGGACCT 5'
1642Triticum aestivumTAGCCAAGGATGATTTGCCalignmentplotGSM911923gi|45861200|gb|AY568297.1|AY568297 PLN Triticum aestivum CCAAT-box transcription factor complex WHAP3 (WHAP3) mRNA, complete cds0824010914.51652
5'     TAGCCAAGGATGATTTGCC          3'
|||||||||||||||||
3' TGTATTCGGTTCCTACTAAACGACCCCCGTTT 5'
1643Triticum aestivumTAGCCAAGGATGATTTGCCTalignmentplotGSM911923gi|45861200|gb|AY568297.1|AY568297 PLN Triticum aestivum CCAAT-box transcription factor complex WHAP3 (WHAP3) mRNA, complete cds0824010914.51652
5'     TAGCCAAGGATGATTTGCCT         3'
||||||||||||||||| |
3' TGTATTCGGTTCCTACTAAACG-ACCCCCGTT 5'
1644Triticum aestivumTCCCTCTGTAAAGAAATATTAalignmentplotGSM911923gi|241986377|gb|AK333638.1|AK333638 HTC Triticum aestivum cDNA, clone: WT006_P13, cultivar: Chinese Spring.253460.01333
5'     TCCCTCTGTAAAGAAATATTA        3'
||||||||||||o||| |o|
3' TACGAGGGAGACATTTTTTTCTGACTTTGTTA 5'
1645Triticum aestivumCTCCGTCCCAAAATATAAGAAalignmentplotGSM911923gi|241985236|gb|AK332496.1|AK332496 HTC Triticum aestivum cDNA, clone: WT004_B23, cultivar: Chinese Spring.227530552.5
5'     CTCCGTCCCAAAATATAAGAA        3'
|||||o|||| |||||||||
3' GAGAGAGGCGGGGTATTATATTCTCGTAAAAA 5'
1646Triticum aestivumAGAGCAGGTACAATGGCAGGCalignmentplotGSM911923gi|241983718|gb|AK331660.1|AK331660 HTC Triticum aestivum cDNA, clone: WT002_A21, cultivar: Chinese Spring.2812022112.5
5'    AGAG-CAGGTACAATGGCAGGC        3'
|||| |||||||||||| |o||
3' ATCTCTCAGTCCATGTTACCCTTCGTGGGCTA 5'
1647Triticum aestivumTCCGGAGGGATTCCCTCCTTGalignmentplotGSM911923gi|155965253|gb|EU081898.1|EU081898 PLN Triticum aestivum polyubiquitin (WubiG) mRNA, partial cds.2895016132.22.5
5'     TCCGGAGGGATTCCCTCCTTG        3'
||||| ||o|| |||||||||
3' GACCAGGCCCCCTTACGGGAGGAACAGGACCT 5'
1648Triticum aestivumTCCGGAGGGATTCCCTCCTTGalignmentplotGSM911923gi|155965253|gb|EU081898.1|EU081898 PLN Triticum aestivum polyubiquitin (WubiG) mRNA, partial cds.21123016132.22.5
5'     TCCGGAGGGATTCCCTCCTTG        3'
||||| ||o|| |||||||||
3' GACCAGGCCCCCTTACGGGAGGAACAGGACCT 5'
1649Triticum aestivumTAGCCAAGGATGATTTGCCalignmentplotGSM911923gi|45861204|gb|AY568299.1|AY568299 PLN Triticum aestivum CCAAT-box transcription factor complex WHAP5 (WHAP5) mRNA, complete cds0823010914.51651
5'     TAGCCAAGGATGATTTGCC          3'
||||||||||||||||||
3' TGTATTCGGTTCCTACTAAACGGCCCCCGTTT 5'
1650Triticum aestivumTAGCCAAGGATGATTTGCCalignmentplotGSM911923gi|32129063|gb|BT009512.1|BT009512 PLN Triticum aestivum clone wr1.pk0094.f2:fis, full insert mRNA sequence.2658010914.51651
5'     TAGCCAAGGATGATTTGCC          3'
||||||||||||||||||
3' TGTATTCGGTTCCTACTAAACGGTCCCCCGTT 5'
1651Triticum aestivumATGTGTCACTGAAATGTGGGCalignmentplotGSM911923gi|241983873|gb|AK331815.1|AK331815 HTC Triticum aestivum cDNA, clone: WT002_G20, cultivar: Chinese Spring.020960.0236364
5'     ATGTGTCACTGAAATGTGGGC        3'
| |||||||||| |oo||oo|
3' ATTGT-CACAGTGACTCTGTACTTGTTCTTTC 5'
1652Triticum aestivumTAGCCAAGGATGATTTGCCalignmentplotGSM911923gi|45861218|gb|AY568306.1|AY568306 PLN Triticum aestivum CCAAT-box transcription factor complex WHAP12 (WHAP12) mRNA, complete c08180608.56411
5'     TAGCCAAGGATGATTTGCC          3'
||||||||||||||||||
3' TGTATTCGGTTCCTACTAAACGGTCCCCCGTT 5'
1653Triticum aestivumTCCACAGGCTTTCTTGAACTGalignmentplotGSM911923gi|241986105|gb|AK333366.1|AK333366 HTC Triticum aestivum cDNA, clone: WT006_E19, cultivar: Chinese Spring.1631036363.5
5'     TCCACAGGCTTTCTTGAACTG        3'
||||||o|||| ||||| ||
3' GAGGAGGTGTTCGAA-GAACTCGAGTGGTTAG 5'
1654Triticum aestivumTGATTGAGCCGTGCCAATATalignmentplotGSM911923gi|241986925|gb|AK334186.1|AK334186 HTC Triticum aestivum cDNA, clone: WT009_E16, cultivar: Chinese Spring.2119003363360.5
5'     TGATTGAGCCGTGCCAATAT         3'
|||||||||||o||||||||
3' GACCACTAACTCGGCGCGGTTATAGAGTGCGC 5'
1655Triticum aestivumCTCCGTCCCAAAATATAAGAAalignmentplotGSM911923gi|241986094|gb|AK333355.1|AK333355 HTC Triticum aestivum cDNA, clone: WT006_E09, cultivar: Chinese Spring.28250.0311113
5'     CTCCGTCCCAAAATATAAGAA        3'
||| |||||| |||||||||
3' GAGAGAGACAGGGTATTATATTCTCGTAAAAA 5'
1656Triticum aestivumAGAATCCTGATGATGCTGCAGalignmentplotGSM911923gi|52854305|gb|AY645945.1|AY645945 PLN Triticum aestivum floral homeotic protein (Q) mRNA, complete cds.2137401050.5
5'     AGAATCCTGATGATGCTGCAG        3'
|o|||||||||||||||||||
3' CATCTTTTAGGACTACTACGACGTCGCATTTC 5'
1657Triticum aestivumTGACAGAAGAGAGTGAGCACAalignmentplotGSM911923gi|241986369|gb|AK333630.1|AK333630 HTC Triticum aestivum cDNA, clone: WT006_P06, cultivar: Chinese Spring.216450.031531533
5'     TGACAGAAGAGAGTGAGCACA        3'
||||||||||||| |||||
3' ACGAACTGTCTTCTCTCTCTCGTACGACTTCT 5'
1658Triticum aestivumGCCTGGCTCCCTGTATGCCalignmentplotGSM911923gi|241983915|gb|AK331857.1|AK331857 HTC Triticum aestivum cDNA, clone: WT002_I17, cultivar: Chinese Spring.01088026262.5
5'     GCCTGGCTCCCTGTATGCC          3'
|||||o|| | ||||||||
3' GGTCCGGACTGA-GTACATACGGAAGGGAAAG 5'
1659Triticum aestivumTAGCCAAGGATGATTTGCCalignmentplotGSM911923gi|32128487|gb|BT008936.1|BT008936 PLN Triticum aestivum clone wdi1c.pk002.b10:fis, full insert mRNA sequence.0947082412
5'     TAGCCAAGGATGATTTGCC          3'
|||||||||||| |||||
3' TTATTTCGGTTCCTACTCAACGGTCTGGTGTG 5'
1660Triticum aestivumCGTACTCCCTCCGTTCCTTTTalignmentplotGSM911923gi|241983773|gb|AK331715.1|AK331715 HTC Triticum aestivum cDNA, clone: WT002_C22, cultivar: Chinese Spring.28740.04223
5'     CGTACTCCCTCCGTTCCTTTT        3'
|| ||||| ||||o|||||o|
3' AGAGGC-TGAGGTAGGCGAGGAAGAGGTAGAC 5'
1661Triticum aestivumTGCAGTTGCTGTCTCAAGCTTalignmentplotGSM911923gi|241987773|gb|AK335030.1|AK335030 HTC Triticum aestivum cDNA, clone: WT011_N18, cultivar: Chinese Spring.28830.05222.5
5'     TGCAGTTGCTGTCTCA-AGCTT       3'
|||||||o|||||||| | |||
3' GGGAACGTCAATGACAGAGTGTAGAATTCGTA 5'
1662Triticum aestivumCCGGACCAGGCTTCATTCCCAalignmentplotGSM911923gi|241983944|gb|AK331886.1|AK331886 HTC Triticum aestivum cDNA, clone: WT002_J20, cultivar: Chinese Spring.09640245324531
5'     CCGGACCAGGCTTCATTCCCA        3'
|||||||||||||||| ||||
3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAGC 5'
1663Triticum aestivumTAGCCAAGGATGATTTGCCalignmentplotGSM911923gi|32128614|gb|BT009063.1|BT009063 PLN Triticum aestivum clone wds1f.pk002.p21:fis, full insert mRNA sequence.0114504384381.5
5'     TAGCCAAGGATGATTTGCC          3'
|||||||o||||||||||
3' TCATCTCGGTTCTTACTAAACGGACGTCTGTT 5'
1664Triticum aestivumAGCCAAGGATGATTTGCCTGalignmentplotGSM911923gi|32128614|gb|BT009063.1|BT009063 PLN Triticum aestivum clone wds1f.pk002.p21:fis, full insert mRNA sequence.211440660.5
5'     AGCCAAGGATGATTTGCCTG         3'
|||||||o||||||||||||
3' CATCTCGGTTCTTACTAAACGGACGTCTGTTG 5'
1665Triticum aestivumTTGTCGCAGAAATGGATGTATCTAalignmentplotGSM911923gi|241985618|gb|AK332879.1|AK332879 HTC Triticum aestivum cDNA, clone: WT005_B16, cultivar: Chinese Spring.2685027274
5'     TTGTCGCAGAAATGGATGTATCTA     3'
|||| ||||| | o||||||||o|
3' TAGTAACAACGTCTGTTTCTACATAGGTGGTT 5'
1666Triticum aestivumGAGCTGCTGGAGCTTTTCCACalignmentplotGSM911923gi|241986655|gb|AK333916.1|AK333916 HTC Triticum aestivum cDNA, clone: WT008_L05, cultivar: Chinese Spring.23900.04223
5'     GAGCTGCTGGAGCTTTTCCAC        3'
||||||||o||o| || ||||
3' CATTCTCGACGATCTTGCAA-GGTGGACGCGC 5'
1667Triticum aestivumCCTCTTCCTCTTCCTCCTCGCalignmentplotGSM911923gi|40644803|gb|AJ577389.1|AJ577389 PLN Triticum aestivum partial mRNA for putative DIP2 protein.17930.0510104
5'     CCTCTTCCTCTTCCTCCTCGC        3'
|||||||||||| | ||| |
3' GACAGGAGAAGGAGAACGCGGA-CTTTGTTGT 5'
1668Triticum aestivumAATTATGGAACGGAGGGAGTAalignmentplotGSM911923gi|241989722|gb|AK330263.1|AK330263 HTC Triticum aestivum cDNA, clone: SET4_A13, cultivar: Chinese Spring.233280.03333
5'     AATTATGGAACGGAGGGAGTA        3'
| ||| |||||||||| ||||
3' AATATAAAT-CCTTGCCTCCGTCATCTTTCGT 5'
1669Triticum aestivumTCCGGAGGGATTCCCTCCTTGalignmentplotGSM911923gi|33325639|gb|AF517839.1|AF517839 PLN Triticum aestivum ubiquitin protein mRNA, partial cds.2107074742
5'     TCCGGAGGGATTCCCTCCTTG        3'
||||| ||||| |||||||||
3' GACCAGGCCCCCCTACGGGAGGAACAGGACCT 5'
1670Triticum aestivumTATTATGGGACGGAGGGAGTAalignmentplotGSM911923gi|241988462|gb|AK335720.1|AK335720 HTC Triticum aestivum cDNA, clone: WT013_J19, cultivar: Chinese Spring.233380222
5'     TATTATGGGACGGAGGGAGTA        3'
|||| | ||||||||||||||
3' GTTCATAAAAGCCTGCCTCCCTCATGTTTGAA 5'
1671Triticum aestivumTAGCCAAGGATGATTTGCCalignmentplotGSM911923gi|32129145|gb|BT009594.1|BT009594 PLN Triticum aestivum clone wre1n.pk0066.e4:fis, full insert mRNA sequence.0906011356.52
5'     TAGCCAAGGATGATTTGCC          3'
|||||||||||| |||||
3' AGTATTCGGTTCCTACTTAACGGTGGCCGTCG 5'
1672Triticum aestivumCTCCGTTCCTAAATATAAGTTalignmentplotGSM911923gi|241989722|gb|AK330263.1|AK330263 HTC Triticum aestivum cDNA, clone: SET4_A13, cultivar: Chinese Spring.234630220.5
5'     CTCCGTTCCTAAATATAAGTT        3'
||||||||||||||||||||o
3' GAGGGAGGCAAGGATTTATATTCAGAAAAATC 5'
1673Triticum aestivumCTCCGTTCCTAAATATAAGCTalignmentplotGSM911923gi|241989722|gb|AK330263.1|AK330263 HTC Triticum aestivum cDNA, clone: SET4_A13, cultivar: Chinese Spring.234630221
5'     CTCCGTTCCTAAATATAAGCT        3'
||||||||||||||||||| |
3' GAGGGAGGCAAGGATTTATATTC-AGAAAAAT 5'
1674Triticum aestivumTCCACAGGCTTTCTTGAACTGalignmentplotGSM911923gi|241990635|gb|AK330792.1|AK330792 HTC Triticum aestivum cDNA, clone: SET5_F03, cultivar: Chinese Spring.065901021021
5'     TCCACAGGCTTTCTTGAACTG        3'
||||||||||||||||||| |
3' GCAAAGGTGTCCGAAAGAACTTGCCAACGCCG 5'
1675Triticum aestivumTTTGGGACGGAGGGAGTACTAalignmentplotGSM911923gi|241988462|gb|AK335720.1|AK335720 HTC Triticum aestivum cDNA, clone: WT013_J19, cultivar: Chinese Spring.233350332
5'     TTTGGGACGGAGGGAGTACTA        3'
||| ||||||||||||||| |
3' CATAAAAGCCTGCCTCCCTCATGTTTGAAAAT 5'
1676Triticum aestivumTTTGGAACGGAGGGAGTATalignmentplotGSM911923gi|241988462|gb|AK335720.1|AK335720 HTC Triticum aestivum cDNA, clone: WT013_J19, cultivar: Chinese Spring.233350.02332
5'     TTTGGAACGGAGGGAGTAT          3'
||o|| ||||||||||||o
3' ATAAAAGCC-TGCCTCCCTCATGTTTGAAAAT 5'
1677Triticum aestivumTTTTGGAACGGAGGGAGTAalignmentplotGSM911923gi|241989722|gb|AK330263.1|AK330263 HTC Triticum aestivum cDNA, clone: SET4_A13, cultivar: Chinese Spring.2332601892
5'     TTTTGGAACGGAGGGAGTA          3'
||| |||||||||| ||||
3' ATATAAATCCTTGCCTCCGTCATCTTTCGTGG 5'
1678Triticum aestivumCCGGACCAGGCTTCATTCCCAalignmentplotGSM911923gi|241987680|gb|AK334937.1|AK334937 HTC Triticum aestivum cDNA, clone: WT011_I24, cultivar: Chinese Spring.078902622620
5'     CCGGACCAGGCTTCATTCCCA        3'
|||||||||||||||||||||
3' CTTAGGCCTGGTCCGAAGTAAGGGTAGTAAAC 5'
1679Triticum aestivumTCCACATTGGGTCAATGTTCCalignmentplotGSM911923gi|241988441|gb|AK335699.1|AK335699 HTC Triticum aestivum cDNA, clone: WT013_I22, cultivar: Chinese Spring.211090.0211113
5'     TCCACATTGGGTCAAT-GTTCC       3'
|| ||||||||||||| ||| |
3' TAACAGCTGTAACCCAGTTAACAAAGGAAGTG 5'
1680Triticum aestivumTTTTGGGACGGAGGGAGTATTalignmentplotGSM911923gi|241986137|gb|AK333398.1|AK333398 HTC Triticum aestivum cDNA, clone: WT006_G02, cultivar: Chinese Spring.226470.03443
5'     TTTTGGGACGGAGGGAGTATT        3'
|||||||||||||| |o||o
3' TCTTAAAACCCTGCCTCCATTATGTAATGTAA 5'
1681Triticum aestivumTGCGACAAGTAATTCCGAACGGAalignmentplotGSM911923gi|42391852|gb|AB161682.1|AB161682 PLN Triticum aestivum WCSP2 mRNA for cold shock domain protein 2, complete cds.28780.0530154
5'    TGCGACAAG-TAATTCCGAACGGA      3'
oo||||||| |||o| ||||||o|
3' GCTGTGCTGTTCTATTGAAGCTTGCTTGTTAT 5'
1682Triticum aestivumTTACTCCCTCCGTCCCACAATalignmentplotGSM911923gi|241986624|gb|AK333885.1|AK333885 HTC Triticum aestivum cDNA, clone: WT008_F19, cultivar: Chinese Spring.112320334
5'     TTACTCCCTCCGTCCCACAAT        3'
||||| ||| |||||| |||
3' ACTCTATGAGTGAGCCAGGGTATTATATCCTA 5'
1683Triticum aestivumTTTGGGACGGAGGGAGTACTTalignmentplotGSM911923gi|241985579|gb|AK332840.1|AK332840 HTC Triticum aestivum cDNA, clone: WT005_A03, cultivar: Chinese Spring.216540841.5
5'     TTTGGGACGGAGGGAGTACTT        3'
|||||o|||||||||||| ||
3' GATAAAACCTTGCCTCCCTCATCAATAGTCCC 5'
1684Triticum aestivumGTGGACTGAAGTGAGCTCCCTalignmentplotGSM911923gi|241989307|gb|AK336285.1|AK336285 HTC Triticum aestivum cDNA, clone: SET3_K24, cultivar: Chinese Spring.28610.01663
5'     GTGGACTGAAGTGAGCTCCCT        3'
|||||||||||| ||||| |
3' CCACAACCTGACTTCACACGAGG-ACAGCTTC 5'
1685Triticum aestivumTCCGGAGGGATTCCCTCCTTGalignmentplotGSM911923gi|21815|gb|X56803.1|X56803 PLN T.aestivum L. mRNA for ubiquitin.21090.02194.752.5
5'     TCCGGAGGGATTCCCTCCTTG        3'
||||| ||o|| |||||||||
3' GACCAGGCCCCCTTACGGGAGGAACAGGACCT 5'
1686Triticum aestivumTTTTGGGACGGAGGGAGTATTalignmentplotGSM911923gi|241988462|gb|AK335720.1|AK335720 HTC Triticum aestivum cDNA, clone: WT013_J19, cultivar: Chinese Spring.233360.02222.5
5'     TTTTGGGACGGAGGGAGTATT        3'
|||| ||||||||||||||o
3' TCATAAAAGCCTGCCTCCCTCATGTTTGAAAA 5'
1687Triticum aestivumTTTTGGAACGGAGGGAGTAalignmentplotGSM911923gi|241988462|gb|AK335720.1|AK335720 HTC Triticum aestivum cDNA, clone: WT013_J19, cultivar: Chinese Spring.233360221.5
5'     TTTTGGAACGGAGGGAGTA          3'
|||o|| ||||||||||||
3' CATAAAAGCC-TGCCTCCCTCATGTTTGAAAA 5'
1688Triticum aestivumTGCAGTTGCTGCCTCAAGCTTalignmentplotGSM911923gi|241988140|gb|AK335397.1|AK335397 HTC Triticum aestivum cDNA, clone: WT012_M22, cultivar: Chinese Spring.28960.03222.5
5'     TGCAGTTGCTGCCTCAAGCTT        3'
|||||||||||||o||| ||
3' TCTTACGTCAACGACGGGGTTAGACTGGCTAG 5'
1689Triticum aestivumAATTATGGAACGGAGGGAGTAalignmentplotGSM911923gi|32128877|gb|BT009326.1|BT009326 PLN Triticum aestivum clone wlm24.pk0016.f9:fis, full insert mRNA sequence.218800.05313
5'     AATTATGGAACGGAGGGAGTA        3'
| ||| |||||||| ||||||
3' TTTATAAAT-CCTTGCCTACCTCATGATGTCT 5'
1690Triticum aestivumCACTATATTTTGGAATGGAGGGAalignmentplotGSM911923gi|241989190|gb|AK336169.1|AK336169 HTC Triticum aestivum cDNA, clone: SET3_G10, cultivar: Chinese Spring.218590442.5
5'     CACTATATTTTGGAATGGAGGGA      3'
|| | ||||||o|||||||||||
3' CTCAGT-AGATAAAATCTTACCTCCCTCATGT 5'
1691Triticum aestivumTTTTGGGACGGAGGGAGTATTalignmentplotGSM911923gi|241988219|gb|AK335477.1|AK335477 HTC Triticum aestivum cDNA, clone: WT012_P23, cultivar: Chinese Spring.29290.0171.43
5'     TTTTGGGACGGAGGGAGTATT        3'
||| ||o|||||||o|||||
3' TTATAAATCCTTGCCTCCTTCATATACAATTA 5'
1692Triticum aestivumTTTTGGAACGGAGGGAGTAGTalignmentplotGSM911923gi|241988219|gb|AK335477.1|AK335477 HTC Triticum aestivum cDNA, clone: WT012_P23, cultivar: Chinese Spring.2929071.42.5
5'     TTTTGGAACGGAGGGAGTAGT        3'
||| ||||||||||o|||| |
3' TTATAAATCCTTGCCTCCTTCAT-ATACAATT 5'
1693Triticum aestivumCTACTCCCTCCGTCCGAAAalignmentplotGSM911923gi|241985690|gb|AK332951.1|AK332951 HTC Triticum aestivum cDNA, clone: WT005_E12, cultivar: Chinese Spring.229440.04223
5'     CTACTCCCTCCGTCCGAAA          3'
|||||||||| || | |||
3' CAAAGATGAGGGAGACATGGTTTAATGAGCAG 5'
1694Triticum aestivumCTACTCCCTCCGTCCCATAATalignmentplotGSM911923gi|241985690|gb|AK332951.1|AK332951 HTC Triticum aestivum cDNA, clone: WT005_E12, cultivar: Chinese Spring.229440.01223
5'     CTACTCCCTCCGTCCCATAAT        3'
|||||||||| || ||| |||
3' CAAAGATGAGGGAGACATGGT-TTAATGAGCA 5'
1695Triticum aestivumTTTTGGGACGGAGGGAGTATTalignmentplotGSM911923gi|241985579|gb|AK332840.1|AK332840 HTC Triticum aestivum cDNA, clone: WT005_A03, cultivar: Chinese Spring.21655031.51.5
5'     TTTTGGGACGGAGGGAGTATT        3'
||||||o|||||||||||| |
3' AGATAAAACCTTGCCTCCCTCATCAATAGTCC 5'
1696Triticum aestivumACCTGCTCCCTCCGTCCCATAalignmentplotGSM911923gi|1754996|gb|U48690.1|U48690 PLN Triticum aestivum calmodulin TaCaM2-1 mRNA, complete cds.29570.0131.53
5'     ACCTGCTCCCTCCGTCCCATA        3'
|| |o||||||||o| |||||
3' ATGTTGTATGAGGGAGGTAAGGTATTACATCA 5'
1697Triticum aestivumTGACATGGTTGGCCCATGGAAalignmentplotGSM911923gi|241988316|gb|AK335574.1|AK335574 HTC Triticum aestivum cDNA, clone: WT013_E02, cultivar: Chinese Spring.233310330
5'     TGACATGGTTGGCCCATGGAA        3'
|||||||||||||||||||||
3' CGGTACTGTACCAACCGGGTACCTTAGGCATC 5'
1698Triticum aestivumTTTTGGGACGGAGGGAGTATTalignmentplotGSM911923gi|32128877|gb|BT009326.1|BT009326 PLN Triticum aestivum clone wlm24.pk0016.f9:fis, full insert mRNA sequence.218780.0271.43
5'     TTTTGGGACGGAGGGAGTATT        3'
||| ||o||||| ||||||o|
3' TTATAAATCCTTGCCTACCTCATGATGTCTGA 5'
1699Triticum aestivumCATGTGCCTTTCTTCTCCACCalignmentplotGSM911923gi|32128556|gb|BT009005.1|BT009005 PLN Triticum aestivum clone wdk2c.pk018.g2:fis, full insert mRNA sequence.217110.05883
5'     CATGTGCCTTTCTTCTCCACC        3'
||||| ||||o|o|||| |||
3' TAAAGTACAAGGAAGGGAGAGTTGGGAAAATA 5'
1700Triticum aestivumCATACTCCCTCCGTTCCTAAAalignmentplotGSM911923gi|241983597|gb|AK331539.1|AK331539 HTC Triticum aestivum cDNA, clone: WT007_M04, cultivar: Chinese Spring.26010.05213.5
5'     CATACTCCCTCCGTTCCTAAA        3'
||| |o|||||||o| |o|||
3' CGAGGTAAGGGGGAGGCGACGGTTTGTGTAGT 5'
1701Triticum aestivumTTTGGGACGGAGGGAGTACTTalignmentplotGSM911923gi|241989169|gb|AK336148.1|AK336148 HTC Triticum aestivum cDNA, clone: SET3_F15, cultivar: Chinese Spring.211450552
5'     TTTGGGACGGAGGGAGTACTT        3'
|||||||||||||||||||
3' TATAAAACCCTGCCTCCCTCATGTTATGTCGT 5'
1702Triticum aestivumTATATACTTCCTCCGTCCGGAalignmentplotGSM911923gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring.214200223
5'     TATATACTTCCTCCGT-CCGGA       3'
||o|||||o||||||| ||oo|
3' TTTCATGTATGAGGGAGGCAAGGTTTTATCTA 5'
1703Triticum aestivumTATTACTTCCTCCGTCCCAAAalignmentplotGSM911923gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring.214190.02333
5'     TATTACTTCCTCCGTCCCAAA        3'
o| ||||o||||||| |||||
3' TCATGT-ATGAGGGAGGCAAGGTTTTATCTAC 5'
1704Triticum aestivumTACTACTTCCTCTGTCCCAAAalignmentplotGSM911923gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring.214190.03333
5'    TAC-TACTTCCTCTGTCCCAAA        3'
||| ||||o||||o|| |||||
3' TTCATGTATGAGGGAGGCAAGGTTTTATCTAC 5'
1705Triticum aestivumTTTTGGGACGGAGGGAGTATTalignmentplotGSM911923gi|32129003|gb|BT009452.1|BT009452 PLN Triticum aestivum clone wlmk8.pk0022.f7:fis, full insert mRNA sequence.2792071.42.5
5'     TTTTGGGACGGAGGGAGTATT        3'
||| ||o|||||||||||| |
3' TTATAAATCCTTGCCTCCCTCATCATCTATCT 5'
1706Triticum aestivumTCCGGAGGGATTCCCTCCTTGalignmentplotGSM911923gi|126544299|gb|AY297059.2|AY297059 PLN Triticum aestivum ubiquitin (WUB1) mRNA, complete cds.2107016132.22.5
5'     TCCGGAGGGATTCCCTCCTTG        3'
||||| ||o|| |||||||||
3' GACCAGGCCCCCTTACGGGAGGAACAGGACCT 5'
1707Triticum aestivumTTTTGGGACGGAGGGAGTATTalignmentplotGSM911923gi|241989169|gb|AK336148.1|AK336148 HTC Triticum aestivum cDNA, clone: SET3_F15, cultivar: Chinese Spring.211460331.5
5'     TTTTGGGACGGAGGGAGTATT        3'
|||||||||||||||||||o
3' ATATAAAACCCTGCCTCCCTCATGTTATGTCG 5'
1708Triticum aestivumTGTACTTCCTCCGTCCCAAAAalignmentplotGSM911923gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring.214180.0110102.5
5'     TGTACTTCCTCCGTCCCAAAA        3'
oo||||o||||||| ||||||
3' TCATGTATGAGGGAGGCAAGGTTTTATCTACT 5'
1709Triticum aestivumACTACTCCCTCCGTTCCTAAAalignmentplotGSM911923gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring.21418010102
5'     ACTACTCCCTCCGTTCCTAAA        3'
| ||||||||||||||| |||
3' CATGT-ATGAGGGAGGCAAGGTTTTATCTACT 5'
1710Triticum aestivumCTGCACTGCCTCTTCCCTGGCalignmentplotGSM911923gi|241986355|gb|AK333616.1|AK333616 HTC Triticum aestivum cDNA, clone: WT006_O16, cultivar: Chinese Spring.27280.01222.5
5'     CTGCACTGCCTCTTCCCTGGC        3'
||||||||||||o ||||| |
3' TCGTGACGTGACGGAGGTGGGACAGGAGCGGG 5'
1711Triticum aestivumTTTGGATTGAAGGGAGCTCTGalignmentplotGSM911923gi|47680448|gb|AY615200.1|AY615200 PLN Triticum aestivum transcription factor Myb3 (Myb3) mRNA, complete cds.0988081812.5
5'     TTTGGATTGAAGGGAGCTCTG        3'
o||||| ||||||||||||oo
3' CATAGAACCTCACTTCCCTCGAGGTAGAAGTT 5'
1712Triticum aestivumTTGTTGGGGAAGCTTCTGGACalignmentplotGSM911923gi|241990281|gb|AK330623.1|AK330623 HTC Triticum aestivum cDNA, clone: SET4_O13, cultivar: Chinese Spring.220290.02332.5
5'     TTGTTGGGGAAGCTTCTGGAC        3'
||o||||||||||o||o|||
3' TACTAATAACCCCTTCGGAGGCCTAAGTGACT 5'
1713Triticum aestivumTTTGGGACGGAGGGAGTACTTalignmentplotGSM911923gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring.213490.01842.5
5'     TTTGGGACGGAGGGAGTACTT        3'
|||||o|||||||||||||
3' GATAAAACCTTGCCTCCCTCATGCTTTTAGTG 5'
1714Triticum aestivumACTCGTCCTCTTCCTCTTCCTalignmentplotGSM911923gi|241986130|gb|AK333391.1|AK333391 HTC Triticum aestivum cDNA, clone: SET2_B01, cultivar: Chinese Spring.24870.05332.5
5'     ACTCGTCCTCTTCCTCTTCCT        3'
|||| |||||||||||o|| |
3' AGCATGAGGAGGAGAAGGAGGAGCATGAGGAG 5'
1715Triticum aestivumCTCCGTCCCAAAATATAAGAAalignmentplotGSM911923gi|241986608|gb|AK333869.1|AK333869 HTC Triticum aestivum cDNA, clone: SET2_C23, cultivar: Chinese Spring.215060331
5'     CTCCGTCCCAAAATATAAGAA        3'
|||||||||| ||||||||||
3' GAGGGAGGCAGGGTATTATATTCTTGCAAAAA 5'
1716Triticum aestivumTGAGAAGGTAGATCATAATAGalignmentplotGSM911923gi|241986385|gb|AK333646.1|AK333646 HTC Triticum aestivum cDNA, clone: WT006_P22, cultivar: Chinese Spring.0579019193.5
5'     TGAGAAGGTAGATCATAATAG        3'
|||| ||| ||||||o ||||
3' TAGTACTC-TCCCTCTAGTGCTATCGAGACCT 5'
1717Triticum aestivumTATTACTTCCTCCGTCCCAAAalignmentplotGSM911923gi|241985826|gb|AK333087.1|AK333087 HTC Triticum aestivum cDNA, clone: WT005_J20, cultivar: Chinese Spring.217710.05223.5
5'     TATTACTTCCTCCGTCCCAAA        3'
|||||o|||||| ||||| |
3' GCCTTTAATGGAGGAGG-AGGGTATCTTGGCC 5'
1718Triticum aestivumACATTATGGAACGGAGGGAGTalignmentplotGSM911923gi|241984777|gb|AK332037.1|AK332037 HTC Triticum aestivum cDNA, clone: WT002_P20, cultivar: Chinese Spring.28040.01222.5
5'     ACATTATGGAACGGAGGGAGT        3'
||||||||o| |o||o|||||
3' GTAATGTAATACTT-GTCTTCCTCATGTTAGG 5'
1719Triticum aestivumTATTATGGGACGGAGGGAGTAalignmentplotGSM911923gi|241984777|gb|AK332037.1|AK332037 HTC Triticum aestivum cDNA, clone: WT002_P20, cultivar: Chinese Spring.28040223
5'     TATTATGGGACGGAGGGAGTA        3'
o||||| |o||o||o||||||
3' TAATGTAATA-CTTGTCTTCCTCATGTTAGGT 5'
1720Triticum aestivumGTGCGACAAGTAATTCGGAACalignmentplotGSM911923gi|241983253|gb|AK331193.1|AK331193 HTC Triticum aestivum cDNA, clone: SET6_K18, cultivar: Chinese Spring.24720.03333
5'     GTGCGACAAGTAATTCGGAAC        3'
||||||| ||o||| |o||||
3' ATGTCACGCTG-TCGTTACGTCTTGCGTTCCT 5'
1721Triticum aestivumTTAGATGAGAAGGCAGATCATAalignmentplotGSM911923gi|241988983|gb|AK330205.1|AK330205 HTC Triticum aestivum cDNA, clone: SET3_O05, cultivar: Chinese Spring.26790.03883
5'     TTAGATGAGAAGGCAGATCATA       3'
|||||||||||| |||||| |
3' AGGATATCTACTCTTCCATCTAGTTTTGATGA 5'
1722Triticum aestivumCGGGTCGGCGCTCCACGCGGCalignmentplotGSM911923gi|241985274|gb|AK332534.1|AK332534 HTC Triticum aestivum cDNA, clone: WT004_D14, cultivar: Chinese Spring.21590.04663
5'     CGGGTCGGCGCTCCACGCGGC        3'
||||||o||| o|| ||||||
3' CAACGCCCAGTCGCAGGGGGCGCCGGGGCAGT 5'
1723Triticum aestivumATTATGGAACGGAGGGAGTalignmentplotGSM911923gi|241987650|gb|AK334907.1|AK334907 HTC Triticum aestivum cDNA, clone: WT011_H08, cultivar: Chinese Spring.217760.0241.083332
5'     ATTATGGAACGGAGGGAGT          3'
||| ||||||||||||||
3' TTATAAAT-CCTTGCCTCCCTCATGTAGGTAT 5'
1724Triticum aestivumAATTATGGAACGGAGGGAGTGalignmentplotGSM911923gi|241987650|gb|AK334907.1|AK334907 HTC Triticum aestivum cDNA, clone: WT011_H08, cultivar: Chinese Spring.217770.02312.5
5'     AATTATGGAACGGAGGGAGTG        3'
| ||| ||||||||||||||o
3' TTTATAAAT-CCTTGCCTCCCTCATGTAGGTA 5'
1725Triticum aestivumAGATGTACTCCCTCCGTCCGAalignmentplotGSM911923gi|241983674|gb|AK331616.1|AK331616 HTC Triticum aestivum cDNA, clone: WT007_P05, cultivar: Chinese Spring.252540222.5
5'     AGATGTACTCCCTCCGTCCGA        3'
||o||||||||||||||||
3' ATGTAGTATATGAGGGAGGCAGGCTTTTTCGA 5'
1726Triticum aestivumTTTTGGGACGGAGGGAGTATTalignmentplotGSM911923gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring.213500.0131.52
5'     TTTTGGGACGGAGGGAGTATT        3'
||||||o||||||||||||o
3' AGATAAAACCTTGCCTCCCTCATGCTTTTAGT 5'
1727Triticum aestivumTTACTCCCTCCGTCCCACAATalignmentplotGSM911923gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring.214170.03443
5'     TTACTCCCTCCGTCCCACAAT        3'
|||||||||||| ||| |||
3' CATGTATGAGGGAGGCAAGGTTTTATCTACTG 5'
1728Triticum aestivumATACTCCCTCCGTCCTCGAAAalignmentplotGSM911923gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring.214170442.5
5'     ATACTCCCTCCGTCCTCGAAA        3'
||||||||||||| | |o|||
3' CATGTATGAGGGAGGCAAG-GTTTTATCTACT 5'
1729Triticum aestivumATACTCCCTCTGTCCCAAATAalignmentplotGSM911923gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring.214170.01442.5
5'     ATACTCCCTCTGTCCCAAATA        3'
||||||||||o|| ||||| |
3' CATGTATGAGGGAGGCAAGGTTT-TATCTACT 5'
1730Triticum aestivumTATTTGTTTACAGAGGGAGTTalignmentplotGSM911923gi|241988346|gb|AK335604.1|AK335604 HTC Triticum aestivum cDNA, clone: WT013_F06, cultivar: Chinese Spring.223790442
5'     TATTTGTTTACAGAGGGAGTT        3'
|||| |||||||||||||||
3' GAATATAATCAAATGTCTCCCTCATTATGCGT 5'
1731Triticum aestivumTATATTTTGGGACGGAGGGAGalignmentplotGSM911923gi|241985433|gb|AK332693.1|AK332693 HTC Triticum aestivum cDNA, clone: WT004_K03, cultivar: Chinese Spring.211420.01442.5
5'     TATATTTTGGGACGGAGGGAG        3'
|||||| ||o||||||||||
3' CTGTTTATAAATCCTTGCCTCCCTCATTTTGC 5'
1732Triticum aestivumCTCCGTCCCAAAATATAAGAAalignmentplotGSM911923gi|241990551|gb|AK330708.1|AK330708 HTC Triticum aestivum cDNA, clone: SET5_B19, cultivar: Chinese Spring.232770221
5'     CTCCGTCCCAAAATATAAGAA        3'
|||||||||| ||||||||||
3' GAGGGAGGCAGGGTATTATATTCTTGCAAAAA 5'
1733Triticum aestivumTTTGGGACGGAGGGAGTACTAalignmentplotGSM911923gi|241986678|gb|AK333939.1|AK333939 HTC Triticum aestivum cDNA, clone: WT008_P05, cultivar: Chinese Spring.218010632.5
5'     TTTGGGACGGAGGGAGTACTA        3'
|| ||o|||||||||||| ||
3' TATAAATCCTTGCCTCCCTCAT-ATACTATGA 5'
1734Triticum aestivumTTTGGGACGGAGGGAGTACATalignmentplotGSM911923gi|241986678|gb|AK333939.1|AK333939 HTC Triticum aestivum cDNA, clone: WT008_P05, cultivar: Chinese Spring.218010632.5
5'     TTTGGGACGGAGGGAGTACAT        3'
|| ||o|||||||||||| ||
3' TATAAATCCTTGCCTCCCTCATATACTATGAT 5'
1735Triticum aestivumTATGGGACGGAGGGAGTATTTalignmentplotGSM911923gi|241986678|gb|AK333939.1|AK333939 HTC Triticum aestivum cDNA, clone: WT008_P05, cultivar: Chinese Spring.218010632.5
5'     TATGGGACGGAGGGAGTATTT        3'
|| ||o||||||||||||| |
3' ATAAAT-CCTTGCCTCCCTCATATACTATGAT 5'
1736Triticum aestivumAATTATGGAACGGAGGGAGTGalignmentplotGSM911923gi|241985433|gb|AK332693.1|AK332693 HTC Triticum aestivum cDNA, clone: WT004_K03, cultivar: Chinese Spring.211400.02332.5
5'     AATTATGGAACGGAGGGAGTG        3'
| ||| ||||||||||||||o
3' TTTATAAAT-CCTTGCCTCCCTCATTTTGCGT 5'
1737Triticum aestivumTCCCTCCGTTCGGAATTACTTalignmentplotGSM911923gi|241985433|gb|AK332693.1|AK332693 HTC Triticum aestivum cDNA, clone: WT004_K03, cultivar: Chinese Spring.212730.03992.5
5'     TCCCTCCGTTCGGAATTACTT        3'
|||||||||||o || |||||
3' GATGAGGGAGGCAAGTATTTATGAACAGAAAG 5'
1738Triticum aestivumTATTTGTTTACAGAGGGAGTTalignmentplotGSM911923gi|241990576|gb|AK330733.1|AK330733 HTC Triticum aestivum cDNA, clone: SET5_C19, cultivar: Chinese Spring.221320332
5'     TATTTGTTTACAGAGGGAGTT        3'
|||| |||||||||||||||
3' GAATATAATCAAATGTCTCCCTCATTATTAAA 5'
1739Triticum aestivumTTTGTACTCCCTCCGTCCGGAalignmentplotGSM911923gi|241990576|gb|AK330733.1|AK330733 HTC Triticum aestivum cDNA, clone: SET5_C19, cultivar: Chinese Spring.221710.04223
5'     TTTGTACTCCCTCCGTCCGGA        3'
|||||||||||||||| | |
3' GAGGAAACATGAGGGAGGCATTCATCACTAGA 5'
1740Triticum aestivumAGAGCAGGTACAATGGCAGGCalignmentplotGSM911923gi|32128522|gb|BT008971.1|BT008971 PLN Triticum aestivum clone wdk1c.pk023.m3:fis, full insert mRNA sequence.1748022113
5'    AGAG-CAGGTACAATGGCAGGC        3'
|||| |||||||||o|| |o||
3' ATCTCTCAGTCCATGTTGCCCTTCGTGGGCTA 5'
1741Triticum aestivumTGTACTTCCTCCGTCCCAAAAalignmentplotGSM911923gi|241983674|gb|AK331616.1|AK331616 HTC Triticum aestivum cDNA, clone: WT007_P05, cultivar: Chinese Spring.252510.01662
5'     TGTACTTCCTCCGTCCCAAAA        3'
|o||||o||||||||| ||||
3' TAGTATATGAGGGAGGCAGGCTTTTTCGAACA 5'
1742Triticum aestivumTGTACTCCCTCCGTTCCTAAAalignmentplotGSM911923gi|241983674|gb|AK331616.1|AK331616 HTC Triticum aestivum cDNA, clone: WT007_P05, cultivar: Chinese Spring.252510662.5
5'     TGTACTCCCTCCGTTCCTAAA        3'
|o|||||||||||| || |||
3' TAGTATATGAGGGAGGCA-GGCTTTTTCGAAC 5'
1743Triticum aestivumACTACTCCCTCCGTTCCTAAAalignmentplotGSM911923gi|241983674|gb|AK331616.1|AK331616 HTC Triticum aestivum cDNA, clone: WT007_P05, cultivar: Chinese Spring.252510.05663.5
5'     ACTACTCCCTCCGTTCCTAAA        3'
| ||||||||||||o| |||
3' AGTAT-ATGAGGGAGGCAGGCTTTTTCGAACA 5'
1744Triticum aestivumATAGCATCATCCATCCTACCAalignmentplotGSM911923gi|241989083|gb|AK336062.1|AK336062 HTC Triticum aestivum cDNA, clone: SET3_C06, cultivar: Chinese Spring.06190.0181814
5'     ATAGCATCATCCATC-CTACCA       3'
|| |||||||||||| | |||
3' TTTGTAACGTAGTAGGTAGTGTTGGAGGTTTG 5'
1745Triticum aestivumAATTATGGAACGGAGGGAGTGalignmentplotGSM911923gi|241986968|gb|AK334229.1|AK334229 HTC Triticum aestivum cDNA, clone: WT009_K22, cultivar: Chinese Spring.217390.03222.5
5'     AATTATGGAACGGAGGGAGTG        3'
| ||| ||||||||||||||o
3' TTCATAAAT-CCTTGCCTCCCTCATATGTAGT 5'
1746Triticum aestivumATTATGGAACGGAGGGAGTalignmentplotGSM911923gi|241986968|gb|AK334229.1|AK334229 HTC Triticum aestivum cDNA, clone: WT009_K22, cultivar: Chinese Spring.217380332
5'     ATTATGGAACGGAGGGAGT          3'
||| ||||||||||||||
3' TCATAAAT-CCTTGCCTCCCTCATATGTAGTT 5'
1747Triticum aestivumAATTATGGAACGGAGGGAGTAalignmentplotGSM911923gi|241983524|gb|AK331464.1|AK331464 HTC Triticum aestivum cDNA, clone: WT007_J01, cultivar: Chinese Spring.210000.02993
5'     AATTATGGAACGGAGGGAGTA        3'
| ||| |||||| ||||||||
3' AATATAAAT-CCTTGCATCCCTCATAAAACGT 5'
1748Triticum aestivumTGAACTACTCCCTCCGTTCTAalignmentplotGSM911923gi|241987616|gb|AK334873.1|AK334873 HTC Triticum aestivum cDNA, clone: WT011_F13, cultivar: Chinese Spring.222950.05443.5
5'     TGAACTACTCCCTCCGTTCTA        3'
o||| |||||| |||||o|o|
3' GTTCGCTTTATGAGGTAGGCAGGGTTTTATCG 5'
1749Triticum aestivumAGATGTACTCCCTCCGTCCGAalignmentplotGSM911923gi|241990523|gb|AK330680.1|AK330680 HTC Triticum aestivum cDNA, clone: SET1_G09, cultivar: Chinese Spring.25620663
5'    AGAT-GTACTCCCTCCGTCCGA        3'
|o|| |||||||||||o||||
3' TGTTTTATCATGAGGGAGGTAGGCCTTAATGA 5'
1750Triticum aestivumAGAGTTACTCCCTCCGTCCGGalignmentplotGSM911923gi|241990523|gb|AK330680.1|AK330680 HTC Triticum aestivum cDNA, clone: SET1_G09, cultivar: Chinese Spring.25620662.5
5'     AGAGTTACTCCCTCCGTCCGG        3'
| || ||||||||||o|||||
3' GTTTTATC-ATGAGGGAGGTAGGCCTTAATGA 5'
1751Triticum aestivumATAGCATCATCCATCCTACCAalignmentplotGSM911923gi|241987514|gb|AK334771.1|AK334771 HTC Triticum aestivum cDNA, clone: WT011_A02, cultivar: Chinese Spring.0156107137134
5'     ATAGCATCATCCATCCTACCA        3'
|||||||||||||| | ||
3' CCTGTATCGTAGTAGGTAAGCCGGGTACGACG 5'
1752Triticum aestivumAAACTTACTTCCTCCGTCCAAalignmentplotGSM911923gi|241989807|gb|AK330348.1|AK330348 HTC Triticum aestivum cDNA, clone: SET4_D21, cultivar: Chinese Spring.01333014144
5'     AAACTTACTTCCTCCGTCCAA        3'
||||| |||||||| ||||
3' TAGGGTTGAAAGAAGGAGG-AGGTGAGGGGCG 5'
1753Triticum aestivumGTACTCCCTCCGTCCTAAAATalignmentplotGSM911923gi|241983524|gb|AK331464.1|AK331464 HTC Triticum aestivum cDNA, clone: WT007_J01, cultivar: Chinese Spring.211450222.5
5'     GTACTCCCTCCGTCCTAAAAT        3'
o|||||||||||| || ||||
3' TATATATGAGGGAGGCAAGAGTTTATATTCAG 5'
1754Triticum aestivumATACTCCCTCCGTCCTCGAAAalignmentplotGSM911923gi|241983524|gb|AK331464.1|AK331464 HTC Triticum aestivum cDNA, clone: WT007_J01, cultivar: Chinese Spring.211450222
5'     ATACTCCCTCCGTCCTCGAAA        3'
||||||||||||| ||| |||
3' TATATATGAGGGAGGCAAGAG-TTTATATTCA 5'
1755Triticum aestivumTTTTGGGACGGAGGGAGTATCalignmentplotGSM911923gi|241987650|gb|AK334907.1|AK334907 HTC Triticum aestivum cDNA, clone: WT011_H08, cultivar: Chinese Spring.217750.0271.43
5'     TTTTGGGACGGAGGGAGTATC        3'
||| ||o||||||||||||o
3' TTATAAATCCTTGCCTCCCTCATGTAGGTATG 5'
1756Triticum aestivumTACTCCCTCCATCCCAAAATAalignmentplotGSM911923gi|241990523|gb|AK330680.1|AK330680 HTC Triticum aestivum cDNA, clone: SET1_G09, cultivar: Chinese Spring.25570.05333
5'     TACTCCCTCCATCCCAAAATA        3'
|||||||||||||| || ||
3' TATCATGAGGGAGGTAGGCCTTAATGAACAGC 5'
1757Triticum aestivumTCTACTCCCTCCGTTCCTAAAalignmentplotGSM911923gi|241983639|gb|AK331581.1|AK331581 HTC Triticum aestivum cDNA, clone: SET1_J20, cultivar: Chinese Spring.26110.01222.5
5'     TCTACTCCCTCCGTTCCTAAA        3'
|o|||||||||||||| |||
3' TTGATGGTGAGGGAGGCAAGGTTTTATCTACT 5'
1758Triticum aestivumCCTACTCCCTCCGTTCCTAAAalignmentplotGSM911923gi|241983639|gb|AK331581.1|AK331581 HTC Triticum aestivum cDNA, clone: SET1_J20, cultivar: Chinese Spring.26110222
5'     CCTACTCCCTCCGTTCCTAAA        3'
|| |||||||||||||| |||
3' TGATGG-TGAGGGAGGCAAGGTTTTATCTACT 5'
1759Triticum aestivumTTTGGGACGGAGGGAGTACTTalignmentplotGSM911923gi|74013819|gb|DQ118252.1|DQ118252 PLN Triticum aestivum gibberellin 3-oxidase 2-3 (GA3ox2-3) mRNA, complete cds.012740333.5
5'     TTTGGGACGGAGGGAGTACTT        3'
| || ||||||||o|||| ||
3' TATAATACGCTGCCTCCTTCATTAACAAACAT 5'
1760Triticum aestivumTGAAGCTGCCAGCATGATCTAalignmentplotGSM911923gi|241987072|gb|AK334329.1|AK334329 HTC Triticum aestivum cDNA, clone: WT009_L17, cultivar: Chinese Spring.03124022224
5'     TGAAGCTGCCAGCATGATCTA        3'
||||||||||| ||||||
3' TTTATGTTCGACGGTCGGACTAGAACGTCCCA 5'
1761Triticum aestivumTTTTGGGACGGAGGGAGTATTalignmentplotGSM911923gi|241983524|gb|AK331464.1|AK331464 HTC Triticum aestivum cDNA, clone: WT007_J01, cultivar: Chinese Spring.299801892.5
5'     TTTTGGGACGGAGGGAGTATT        3'
||| ||o||| ||||||||||
3' ATATAAATCCTTGCATCCCTCATAAAACGTCG 5'
1762Triticum aestivumTTTGGGACGGAGGGAGTACTTalignmentplotGSM911923gi|32128647|gb|BT009096.1|BT009096 PLN Triticum aestivum clone wkm2c.pk005.g2:fis, full insert mRNA sequence.28000.03223
5'     TTTGGGACGGAGGGAGTACTT        3'
|||||o|||||||||||| o
3' CATTAAACCTTGCCTCCCTCATCGTCCTTCGT 5'
1763Triticum aestivumGGCGCCGACGATGACGGAGGAalignmentplotGSM911923gi|241985627|gb|AK332888.1|AK332888 HTC Triticum aestivum cDNA, clone: WT005_B24, cultivar: Chinese Spring.23640.04332.5
5'     GGCGCCGACGATGACGGAGGA        3'
|||||||||||o||||| ||
3' ACTACCGCGGCTGCTGCTGCCACCACTCGGTC 5'
1764Triticum aestivumTATTATGGGACGGAGGGAGTAalignmentplotGSM911923gi|32128647|gb|BT009096.1|BT009096 PLN Triticum aestivum clone wkm2c.pk005.g2:fis, full insert mRNA sequence.28030442.5
5'     TATTATGGGACGGAGGGAGTA        3'
|| | |||o||||||||||||
3' GCTCATTAAACCTTGCCTCCCTCATCGTCCTT 5'
1765Triticum aestivumCATTATGGGACGGAGGGAGTAalignmentplotGSM911923gi|32128647|gb|BT009096.1|BT009096 PLN Triticum aestivum clone wkm2c.pk005.g2:fis, full insert mRNA sequence.28030.01442.5
5'     CATTATGGGACGGAGGGAGTA        3'
||| |||o||||||||||||
3' CTCATTAA-ACCTTGCCTCCCTCATCGTCCTT 5'
1766Triticum aestivumAGGATCTTGATGATGCTGCAGalignmentplotGSM911923gi|241983258|gb|AK331198.1|AK331198 HTC Triticum aestivum cDNA, clone: SET6_M01, cultivar: Chinese Spring.0144902662663.5
5'     AGGATCTTGATGATGCTGCAG        3'
|o||| |||||||||||| |
3' CCACCCTTAGCACTACTACGACGCCGACGACG 5'
1767Triticum aestivumTAGCCAAGGATGATTTGCCalignmentplotGSM911923gi|32129093|gb|BT009542.1|BT009542 PLN Triticum aestivum clone wr1.pk0153.c7:fis, full insert mRNA sequence.07770.0182412
5'     TAGCCAAGGATGATTTGCC          3'
|||||||||||| |||||
3' TTATTTCGGTTCCTACTCAACGGACTGGTGTG 5'
1768Triticum aestivumAATTATGGAACGGAGGGAGTGalignmentplotGSM911923gi|32129157|gb|BT009606.1|BT009606 PLN Triticum aestivum clone wre1n.pk0091.d5:fis, full insert mRNA sequence.212150.01222.5
5'     AATTATGGAACGGAGGGAGTG        3'
|||| | |||||||||||||o
3' CTCATTAAGA-CTTGCCTCCCTCATCGTGATT 5'
1769Triticum aestivumGTACTCCCTCCGTCCCATAATalignmentplotGSM911923gi|241988536|gb|AK335793.1|AK335793 HTC Triticum aestivum cDNA, clone: WT013_M16, cultivar: Chinese Spring.29680.04223.5
5'     GTACTCCCTCCGTCCCATAAT        3'
o|||||||||||| | ||||
3' CATATATGAGGGAGGCAAG-TATTTGTTCACT 5'
1770Triticum aestivumATACTCCCTCCGTCCGAAAalignmentplotGSM911923gi|241988536|gb|AK335793.1|AK335793 HTC Triticum aestivum cDNA, clone: WT013_M16, cultivar: Chinese Spring.29680.02222.5
5'     ATACTCCCTCCGTCCGAAA          3'
||||||||||||| |o ||
3' CATATATGAGGGAGGCAAGTATTTGTTCACTG 5'
1771Triticum aestivumATACTCCCTCCGTCCCATAATalignmentplotGSM911923gi|241988536|gb|AK335793.1|AK335793 HTC Triticum aestivum cDNA, clone: WT013_M16, cultivar: Chinese Spring.29680.01223
5'     ATACTCCCTCCGTCCCATAAT        3'
||||||||||||| ||||||
3' CATATATGAGGGAGGCAAGGTATTTTTCACTG 5'
1772Triticum aestivumTTTTGGGACGGAGGGAGTATTalignmentplotGSM911923gi|241986968|gb|AK334229.1|AK334229 HTC Triticum aestivum cDNA, clone: WT009_K22, cultivar: Chinese Spring.217370.01222.5
5'     TTTTGGGACGGAGGGAGTATT        3'
||| ||o|||||||||||||
3' TCATAAATCCTTGCCTCCCTCATATGTAGTTC 5'
1773Triticum aestivumTTTTGGAACGGAGGGAGTAGTalignmentplotGSM911923gi|241986968|gb|AK334229.1|AK334229 HTC Triticum aestivum cDNA, clone: WT009_K22, cultivar: Chinese Spring.217370222
5'     TTTTGGAACGGAGGGAGTAGT        3'
||| ||||||||||||||| |
3' TCATAAATCCTTGCCTCCCTCAT-ATGTAGTT 5'
1774Triticum aestivumTTACTCCCTCCGTCCCACAATalignmentplotGSM911923gi|241983639|gb|AK331581.1|AK331581 HTC Triticum aestivum cDNA, clone: SET1_J20, cultivar: Chinese Spring.26100.01553
5'     TTACTCCCTCCGTCCCACAAT        3'
oo||||||||||| ||| |||
3' TGATGGTGAGGGAGGCAAGGTTTTATCTACTG 5'
1775Triticum aestivumTTGTCGCAGAAATGGATGTATCTAalignmentplotGSM911924gi|241990229|gb|AK330571.1|AK330571 HTC Triticum aestivum cDNA, clone: SET4_M12, cultivar: Chinese Spring.21820332.5
5'     TTGTCGCAGAAATGGATGTATCTA     3'
|||||| |||||||o|||||| ||
3' AATGAACAGCATCTTTACTTACATAAATTTAC 5'
1776Triticum aestivumTGCAGTTGCTGTCTCAAGCTTalignmentplotGSM911924gi|241986856|gb|AK334117.1|AK334117 HTC Triticum aestivum cDNA, clone: WT009_K07, cultivar: Chinese Spring.02844012123
5'     TGCAGTTGCTGTCTCAAGCTT        3'
oo| ||||||||||||||||
3' TCAAGTG-CAACGACAGAGTTCGATAACTGGA 5'
1777Triticum aestivumTATTATGGGACGGAGGGAGTAalignmentplotGSM911924gi|241987784|gb|AK335041.1|AK335041 HTC Triticum aestivum cDNA, clone: WT011_O10, cultivar: Chinese Spring.116090442.5
5'     TATTATGGGACGGAGGGAGTA        3'
|||| ||o||| |||||||||
3' GAATATAAAACTCTGGCTCCCTCATGGATGGT 5'
1778Triticum aestivumTGCATTTGCACCTGCACCTalignmentplotGSM911924gi|241983148|gb|AK331088.1|AK331088 HTC Triticum aestivum cDNA, clone: SET6_A17, cultivar: Chinese Spring.21100.0552.52
5'     TGCATTTGCACCTGCACCT          3'
||||o|| ||||o||||||
3' AGCAACGTGAA-GTGGGCGTGGAAGAAGGGGT 5'
1779Triticum aestivumCGGTTGGGCTGTATGATGGCGAalignmentplotGSM911924gi|21736|gb|X07780.1|X07780 PLN Wheat mRNA for fructose-1,6-bisphosphatase (EC 3.1.3.11).26770.02663
5'     CGGTTGGGCTGTATGATGGCGA       3'
||| ||||||||| |||| |||
3' AGCAGCCTACCCGACAT-CTACGGCTTCTACC 5'
1780Triticum aestivumTTGAGCCGTGCCAATATCACGalignmentplotGSM911924gi|241986925|gb|AK334186.1|AK334186 HTC Triticum aestivum cDNA, clone: WT009_E16, cultivar: Chinese Spring.011870112211222
5'     TTGAGCCGTGCCAATATCACG        3'
||||||||o||||||||| |o
3' CACTAACTCGGCGCGGTTATAGAGTGCGCGCG 5'
1781Triticum aestivumTATTTCTTTACAGAGGGACTAalignmentplotGSM911924gi|241987307|gb|AK334564.1|AK334564 HTC Triticum aestivum cDNA, clone: WT010_E24, cultivar: Chinese Spring.219250.02333
5'     TATTTCTTTACAGAGGGACTA        3'
o|||||o||||| ||| ||||
3' TTATGTAAAGGAATGTGTCC-TGATATATTAT 5'
1782Triticum aestivumTCCGGAGGGATTCCCTCCTTGalignmentplotGSM911924gi|32351003|gb|AY290730.1|AY290730 PLN Triticum aestivum ubiquitin-like mRNA, partial sequence.2272052522
5'     TCCGGAGGGATTCCCTCCTTG        3'
||||| ||||| |||||||||
3' GACCAGGCCGCCCTACGGGAGGAACAGGACCT 5'
1783Triticum aestivumAACATACTCCCTCCGTCCGGAalignmentplotGSM911924gi|241986513|gb|AK333774.1|AK333774 HTC Triticum aestivum cDNA, clone: WT008_C24, cultivar: Chinese Spring.212030.04223.5
5'     AACATACTCCCTCCG-TCCGGA       3'
||||||||||||| | | ||o|
3' GTAGTTGTATGAGGGAGTCTACGCTTTCGAAT 5'
1784Triticum aestivumTAGCCAAGGATGATTTGCCalignmentplotGSM911924gi|45861200|gb|AY568297.1|AY568297 PLN Triticum aestivum CCAAT-box transcription factor complex WHAP3 (WHAP3) mRNA, complete cds0824026333.81322
5'     TAGCCAAGGATGATTTGCC          3'
|||||||||||||||||
3' TGTATTCGGTTCCTACTAAACGACCCCCGTTT 5'
1785Triticum aestivumTAGCCAAGGATGATTTGCCTalignmentplotGSM911924gi|45861200|gb|AY568297.1|AY568297 PLN Triticum aestivum CCAAT-box transcription factor complex WHAP3 (WHAP3) mRNA, complete cds0824026333.81322
5'     TAGCCAAGGATGATTTGCCT         3'
||||||||||||||||| |
3' TGTATTCGGTTCCTACTAAACG-ACCCCCGTT 5'
1786Triticum aestivumTACTTCCTCCGTCCCAAAATAalignmentplotGSM911924gi|18496064|gb|AJ420778.1|AJ420778 PLN Triticum aestivum partial mRNA for putative fructose 1-,6- biphosphate aldolase (ald gene28860.0116163
5'     TACTTCCTCCGTCCCAAAATA        3'
||| | |||||||| ||||||
3' GTCTATG-ATGAGGCAGGTTTTTATTCACAGT 5'
1787Triticum aestivumAGCCAAGGATGATTTGCCTGalignmentplotGSM911924gi|45861200|gb|AY568297.1|AY568297 PLN Triticum aestivum CCAAT-box transcription factor complex WHAP3 (WHAP3) mRNA, complete cds2823030.2307691
5'     AGCCAAGGATGATTTGCCTG         3'
||||||||||||||||| ||
3' GTATTCGGTTCCTACTAAACG-ACCCCCGTTT 5'
1788Triticum aestivumCTCCGTCCCAAAATATAAGAAalignmentplotGSM911924gi|241985236|gb|AK332496.1|AK332496 HTC Triticum aestivum cDNA, clone: WT004_B23, cultivar: Chinese Spring.227530.0318182.5
5'     CTCCGTCCCAAAATATAAGAA        3'
|||||o|||| |||||||||
3' GAGAGAGGCGGGGTATTATATTCTCGTAAAAA 5'
1789Triticum aestivumTAGCCAAGGATGATTTGCCalignmentplotGSM911924gi|32129063|gb|BT009512.1|BT009512 PLN Triticum aestivum clone wr1.pk0094.f2:fis, full insert mRNA sequence.2658026333.81321
5'     TAGCCAAGGATGATTTGCC          3'
||||||||||||||||||
3' TGTATTCGGTTCCTACTAAACGGTCCCCCGTT 5'
1790Triticum aestivumACTCCCTCCGTTCCATAATGTalignmentplotGSM911924gi|32129089|gb|BT009538.1|BT009538 PLN Triticum aestivum clone wr1.pk0144.b10:fis, full insert mRNA sequence.224160.01222.5
5'     ACTCCCTCCGTTCCATAATGT        3'
|||||||||||||| |||o|
3' TTCCTGAGGGAGGCAAGGATTTATATTTACGT 5'
1791Triticum aestivumTGATTGAGCCGTGCCAATATalignmentplotGSM911924gi|241986925|gb|AK334186.1|AK334186 HTC Triticum aestivum cDNA, clone: WT009_E16, cultivar: Chinese Spring.2119004144140.5
5'     TGATTGAGCCGTGCCAATAT         3'
|||||||||||o||||||||
3' GACCACTAACTCGGCGCGGTTATAGAGTGCGC 5'
1792Triticum aestivumTCCGGAGGGATTCCCTCCTTGalignmentplotGSM911924gi|155965253|gb|EU081898.1|EU081898 PLN Triticum aestivum polyubiquitin (WubiG) mRNA, partial cds.211230.0224749.42.5
5'     TCCGGAGGGATTCCCTCCTTG        3'
||||| ||o|| |||||||||
3' GACCAGGCCCCCTTACGGGAGGAACAGGACCT 5'
1793Triticum aestivumAGAGCAGGTACAATGGCAGGCalignmentplotGSM911924gi|241983718|gb|AK331660.1|AK331660 HTC Triticum aestivum cDNA, clone: WT002_A21, cultivar: Chinese Spring.28120.012914.52.5
5'    AGAG-CAGGTACAATGGCAGGC        3'
|||| |||||||||||| |o||
3' ATCTCTCAGTCCATGTTACCCTTCGTGGGCTA 5'
1794Triticum aestivumTCCGGAGGGATTCCCTCCTTGalignmentplotGSM911924gi|155965253|gb|EU081898.1|EU081898 PLN Triticum aestivum polyubiquitin (WubiG) mRNA, partial cds.2895024749.42.5
5'     TCCGGAGGGATTCCCTCCTTG        3'
||||| ||o|| |||||||||
3' GACCAGGCCCCCTTACGGGAGGAACAGGACCT 5'
1795Triticum aestivumTAGCCAAGGATGATTTGCCalignmentplotGSM911924gi|45861204|gb|AY568299.1|AY568299 PLN Triticum aestivum CCAAT-box transcription factor complex WHAP5 (WHAP5) mRNA, complete cds0823026333.81321
5'     TAGCCAAGGATGATTTGCC          3'
||||||||||||||||||
3' TGTATTCGGTTCCTACTAAACGGCCCCCGTTT 5'
1796Triticum aestivumAGCCAAGGATGATTTGCCTGalignmentplotGSM911924gi|45861204|gb|AY568299.1|AY568299 PLN Triticum aestivum CCAAT-box transcription factor complex WHAP5 (WHAP5) mRNA, complete cds2822030.2307691
5'     AGCCAAGGATGATTTGCCTG         3'
|||||||||||||||||| |
3' GTATTCGGTTCCTACTAAACGGCCCCCGTTTC 5'
1797Triticum aestivumATGTGTCACTGAAATGTGGGCalignmentplotGSM911924gi|241983873|gb|AK331815.1|AK331815 HTC Triticum aestivum cDNA, clone: WT002_G20, cultivar: Chinese Spring.02096028284
5'     ATGTGTCACTGAAATGTGGGC        3'
| |||||||||| |oo||oo|
3' ATTGT-CACAGTGACTCTGTACTTGTTCTTTC 5'
1798Triticum aestivumTAGCCAAGGATGATTTGCCalignmentplotGSM911924gi|45861218|gb|AY568306.1|AY568306 PLN Triticum aestivum CCAAT-box transcription factor complex WHAP12 (WHAP12) mRNA, complete c0818017724.38461
5'     TAGCCAAGGATGATTTGCC          3'
||||||||||||||||||
3' TGTATTCGGTTCCTACTAAACGGTCCCCCGTT 5'
1799Triticum aestivumAGAATCCTGATGATGCTGCAGalignmentplotGSM911924gi|52854305|gb|AY645945.1|AY645945 PLN Triticum aestivum floral homeotic protein (Q) mRNA, complete cds.2137401260.5
5'     AGAATCCTGATGATGCTGCAG        3'
|o|||||||||||||||||||
3' CATCTTTTAGGACTACTACGACGTCGCATTTC 5'
1800Triticum aestivumTCCACAGGCTTTCTTGAACTGalignmentplotGSM911924gi|241986105|gb|AK333366.1|AK333366 HTC Triticum aestivum cDNA, clone: WT006_E19, cultivar: Chinese Spring.06310.011201203.5
5'     TCCACAGGCTTTCTTGAACTG        3'
||||||o|||| ||||| ||
3' GAGGAGGTGTTCGAA-GAACTCGAGTGGTTAG 5'
1801Triticum aestivumCTCCGTCCCAAAATATAAGAAalignmentplotGSM911924gi|241986094|gb|AK333355.1|AK333355 HTC Triticum aestivum cDNA, clone: WT006_E09, cultivar: Chinese Spring.28250.02223
5'     CTCCGTCCCAAAATATAAGAA        3'
||| |||||| |||||||||
3' GAGAGAGACAGGGTATTATATTCTCGTAAAAA 5'
1802Triticum aestivumAGCCAAGGATGATTTGCCTGalignmentplotGSM911924gi|45861218|gb|AY568306.1|AY568306 PLN Triticum aestivum CCAAT-box transcription factor complex WHAP12 (WHAP12) mRNA, complete c2817030.2307691
5'     AGCCAAGGATGATTTGCCTG         3'
|||||||||||||||||| |
3' GTATTCGGTTCCTACTAAACGGTCCCCCGTTT 5'
1803Triticum aestivumGCTCCCTCCGTCCCATAATATalignmentplotGSM911924gi|32128860|gb|BT009309.1|BT009309 PLN Triticum aestivum clone wlm1.pk0020.e5:fis, full insert mRNA sequence.22950.02213
5'     GCTCCCTCCGTCCCATAATAT        3'
|||||||||| |||||| ||
3' GTATAGAGGGAGGCACGGTATTCTAGCTACTT 5'
1804Triticum aestivumGCCTGGCTCCCTGTATGCCalignmentplotGSM911924gi|241983915|gb|AK331857.1|AK331857 HTC Triticum aestivum cDNA, clone: WT002_I17, cultivar: Chinese Spring.01088089892.5
5'     GCCTGGCTCCCTGTATGCC          3'
|||||o|| | ||||||||
3' GGTCCGGACTGA-GTACATACGGAAGGGAAAG 5'
1805Triticum aestivumTATTATGGGACGGAGGGAGTAalignmentplotGSM911924gi|241985236|gb|AK332496.1|AK332496 HTC Triticum aestivum cDNA, clone: WT004_B23, cultivar: Chinese Spring.227060550.5
5'     TATTATGGGACGGAGGGAGTA        3'
|||||||||||o|||||||||
3' GAATATAATACCCTGTCTCCCTCATGTATACT 5'
1806Triticum aestivumTAGCCAAGGATGATTTGCCalignmentplotGSM911924gi|32128487|gb|BT008936.1|BT008936 PLN Triticum aestivum clone wdi1c.pk002.b10:fis, full insert mRNA sequence.09470148742
5'     TAGCCAAGGATGATTTGCC          3'
|||||||||||| |||||
3' TTATTTCGGTTCCTACTCAACGGTCTGGTGTG 5'
1807Triticum aestivumCCGGACCAGGCTTCATTCCCAalignmentplotGSM911924gi|241983944|gb|AK331886.1|AK331886 HTC Triticum aestivum cDNA, clone: WT002_J20, cultivar: Chinese Spring.09640311531151
5'     CCGGACCAGGCTTCATTCCCA        3'
|||||||||||||||| ||||
3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAGC 5'
1808Triticum aestivumTAGCCAAGGATGATTTGCCalignmentplotGSM911924gi|32128614|gb|BT009063.1|BT009063 PLN Triticum aestivum clone wds1f.pk002.p21:fis, full insert mRNA sequence.0114508188181.5
5'     TAGCCAAGGATGATTTGCC          3'
|||||||o||||||||||
3' TCATCTCGGTTCTTACTAAACGGACGTCTGTT 5'
1809Triticum aestivumAGCCAAGGATGATTTGCCTGalignmentplotGSM911924gi|32128614|gb|BT009063.1|BT009063 PLN Triticum aestivum clone wds1f.pk002.p21:fis, full insert mRNA sequence.211440220.5
5'     AGCCAAGGATGATTTGCCTG         3'
|||||||o||||||||||||
3' CATCTCGGTTCTTACTAAACGGACGTCTGTTG 5'
1810Triticum aestivumTTGTCGCAGAAATGGATGTATCTAalignmentplotGSM911924gi|241985618|gb|AK332879.1|AK332879 HTC Triticum aestivum cDNA, clone: WT005_B16, cultivar: Chinese Spring.26850.0420204
5'     TTGTCGCAGAAATGGATGTATCTA     3'
|||| ||||| | o||||||||o|
3' TAGTAACAACGTCTGTTTCTACATAGGTGGTT 5'
1811Triticum aestivumTTGTCGCAGGTATGGGTGTATalignmentplotGSM911924gi|241983270|gb|AK331210.1|AK331210 HTC Triticum aestivum cDNA, clone: SET6_M12, cultivar: Chinese Spring.25250.05843
5'     TTGTCGCAGGTATGGGTGTAT        3'
o||||||||| ||||o|| ||
3' AAATGACAGCGTCCCTACCTACTTACGAGTAT 5'
1812Triticum aestivumTATATTTTGGGACGGAGGGAGalignmentplotGSM911924gi|241989722|gb|AK330263.1|AK330263 HTC Triticum aestivum cDNA, clone: SET4_A13, cultivar: Chinese Spring.233300662.5
5'     TATATTTTGGGACGGAGGGAG        3'
||||||| ||o||||||| ||
3' CTGAATATAAATCCTTGCCTCCGTCATCTTTC 5'
1813Triticum aestivumAATTATGGAACGGAGGGAGTAalignmentplotGSM911924gi|241989722|gb|AK330263.1|AK330263 HTC Triticum aestivum cDNA, clone: SET4_A13, cultivar: Chinese Spring.233280.0222223
5'     AATTATGGAACGGAGGGAGTA        3'
| ||| |||||||||| ||||
3' AATATAAAT-CCTTGCCTCCGTCATCTTTCGT 5'
1814Triticum aestivumTCCGGAGGGATTCCCTCCTTGalignmentplotGSM911924gi|33325639|gb|AF517839.1|AF517839 PLN Triticum aestivum ubiquitin protein mRNA, partial cds.210701021022
5'     TCCGGAGGGATTCCCTCCTTG        3'
||||| ||||| |||||||||
3' GACCAGGCCCCCCTACGGGAGGAACAGGACCT 5'
1815Triticum aestivumTAGCCAAGGATGATTTGCCalignmentplotGSM911924gi|32129145|gb|BT009594.1|BT009594 PLN Triticum aestivum clone wre1n.pk0066.e4:fis, full insert mRNA sequence.09060243121.52
5'     TAGCCAAGGATGATTTGCC          3'
|||||||||||| |||||
3' AGTATTCGGTTCCTACTTAACGGTGGCCGTCG 5'
1816Triticum aestivumAATTATGGAACGGAGGGAGTGalignmentplotGSM911924gi|241988219|gb|AK335477.1|AK335477 HTC Triticum aestivum cDNA, clone: WT012_P23, cultivar: Chinese Spring.29310.04103.666673
5'     AATTATGGAACGGAGGGAGTG        3'
| ||| ||||||||||o|||o
3' TTTATAAAT-CCTTGCCTCCTTCATATACAAT 5'
1817Triticum aestivumGTTACTCCCTCCGTTCCTAAAalignmentplotGSM911924gi|241988323|gb|AK335581.1|AK335581 HTC Triticum aestivum cDNA, clone: WT013_E07, cultivar: Chinese Spring.213620.05223.5
5'     GTTACTCCCTCCGTTCCTAAA        3'
| ||||||||||||o| |||
3' GAAACCATGAGGGAGGCAGGCCTTTATGAACA 5'
1818Triticum aestivumTATTTGTTTACAGAGGGAGTTalignmentplotGSM911924gi|14571548|gb|AY036610.1|AY036610 PLN Triticum aestivum beclin1-like protein mRNA, complete cds.218530212
5'     TATTTGTTTACAGAGGGAGTT        3'
||||| ||||||||||||||
3' CTAGATAAAGAAATGTCTCCCTCATGTATAAT 5'
1819Triticum aestivumTTTGGGACGGAGGGAGTACTAalignmentplotGSM911924gi|241988219|gb|AK335477.1|AK335477 HTC Triticum aestivum cDNA, clone: WT012_P23, cultivar: Chinese Spring.29280.03122.43
5'     TTTGGGACGGAGGGAGTACTA        3'
|| ||o|||||||o|||| ||
3' TATAAATCCTTGCCTCCTTCAT-ATACAATTA 5'
1820Triticum aestivumTTTGGGACGGAGGGAGTACATalignmentplotGSM911924gi|241988219|gb|AK335477.1|AK335477 HTC Triticum aestivum cDNA, clone: WT012_P23, cultivar: Chinese Spring.29280.02122.43
5'     TTTGGGACGGAGGGAGTACAT        3'
|| ||o|||||||o|||| ||
3' TATAAATCCTTGCCTCCTTCATATACAATTAC 5'
1821Triticum aestivumTATGGGACGGAGGGAGTATTTalignmentplotGSM911924gi|241988219|gb|AK335477.1|AK335477 HTC Triticum aestivum cDNA, clone: WT012_P23, cultivar: Chinese Spring.29280.03122.43
5'     TATGGGACGGAGGGAGTATTT        3'
|| ||o|||||||o||||| |
3' ATAAAT-CCTTGCCTCCTTCATATACAATTAC 5'
1822Triticum aestivumTATTATGGGACGGAGGGAGTAalignmentplotGSM911924gi|241986916|gb|AK334177.1|AK334177 HTC Triticum aestivum cDNA, clone: WT009_C24, cultivar: Chinese Spring.232850221.5
5'     TATTATGGGACGGAGGGAGTA        3'
|||||||| ||o|||||||||
3' GTTTATAATACCATGTCTCCCTCATAGAAGAT 5'
1823Triticum aestivumTTTTGGAACGGAGGGAGTAalignmentplotGSM911924gi|241989722|gb|AK330263.1|AK330263 HTC Triticum aestivum cDNA, clone: SET4_A13, cultivar: Chinese Spring.233260.0352262
5'     TTTTGGAACGGAGGGAGTA          3'
||| |||||||||| ||||
3' ATATAAATCCTTGCCTCCGTCATCTTTCGTGG 5'
1824Triticum aestivumATTATGGGGCGGAGGGAGTalignmentplotGSM911924gi|241990850|gb|AK331006.1|AK331006 HTC Triticum aestivum cDNA, clone: SET5_N13, cultivar: Chinese Spring.221390.02442.5
5'     ATTATGGGGCGGAGGGAGT          3'
|||||||| |||||o |||
3' AATGTAATACCCGGCCTCTATCATGAACTCTT 5'
1825Triticum aestivumCACTATATTTTGGAATGGAGGGAalignmentplotGSM911924gi|241989266|gb|AK336244.1|AK336244 HTC Triticum aestivum cDNA, clone: SET3_J09, cultivar: Chinese Spring.210380.01223
5'     CACTATATTTTGGAATGGAGGGA      3'
|||| ||||||||| oo||||||
3' TGCTGTGA-ATAAAACCTGGTCTCCCTCATTA 5'
1826Triticum aestivumATAGCATCATCCATCCTACCAalignmentplotGSM911924gi|241983466|gb|AK331406.1|AK331406 HTC Triticum aestivum cDNA, clone: WT007_G17, cultivar: Chinese Spring.08580553
5'     ATAGCATCATCCATCCTACCA        3'
|||||||||||| ||||||
3' CCGGGATCGTAGTAGGTCGGATGGGTTCGAGC 5'
1827Triticum aestivumACATTGTGGGACGGAGGGAGTalignmentplotGSM911924gi|241990850|gb|AK331006.1|AK331006 HTC Triticum aestivum cDNA, clone: SET5_N13, cultivar: Chinese Spring.221410.04223
5'     ACATTGTGGGACGGAGGGAGT        3'
|||||o|||| |||||o |||
3' AGAATGTAATACCCGGCCTCTATCATGAACTC 5'
1828Triticum aestivumTCCACAGGCTTTCTTGAACTGalignmentplotGSM911924gi|241990635|gb|AK330792.1|AK330792 HTC Triticum aestivum cDNA, clone: SET5_F03, cultivar: Chinese Spring.065904304301
5'     TCCACAGGCTTTCTTGAACTG        3'
||||||||||||||||||| |
3' GCAAAGGTGTCCGAAAGAACTTGCCAACGCCG 5'
1829Triticum aestivumTTTTGGGACGGAGGGAGTATTalignmentplotGSM911924gi|241988462|gb|AK335720.1|AK335720 HTC Triticum aestivum cDNA, clone: WT013_J19, cultivar: Chinese Spring.233360.02222.5
5'     TTTTGGGACGGAGGGAGTATT        3'
|||| ||||||||||||||o
3' TCATAAAAGCCTGCCTCCCTCATGTTTGAAAA 5'
1830Triticum aestivumTTTTGGAACGGAGGGAGTAalignmentplotGSM911924gi|241988462|gb|AK335720.1|AK335720 HTC Triticum aestivum cDNA, clone: WT013_J19, cultivar: Chinese Spring.233360221.5
5'     TTTTGGAACGGAGGGAGTA          3'
|||o|| ||||||||||||
3' CATAAAAGCC-TGCCTCCCTCATGTTTGAAAA 5'
1831Triticum aestivumTTTGGGACGGAGGGAGTACTTalignmentplotGSM911924gi|241986137|gb|AK333398.1|AK333398 HTC Triticum aestivum cDNA, clone: WT006_G02, cultivar: Chinese Spring.226460442.5
5'     TTTGGGACGGAGGGAGTACTT        3'
||||||||||||| |o||| |
3' CTTAAAACCCTGCCTCCATTATGTAATGTAAT 5'
1832Triticum aestivumTTTTGGGACGGAGGGAGTATTalignmentplotGSM911924gi|241988219|gb|AK335477.1|AK335477 HTC Triticum aestivum cDNA, clone: WT012_P23, cultivar: Chinese Spring.29290.03316.53
5'     TTTTGGGACGGAGGGAGTATT        3'
||| ||o|||||||o|||||
3' TTATAAATCCTTGCCTCCTTCATATACAATTA 5'
1833Triticum aestivumTTTTGGAACGGAGGGAGTAGTalignmentplotGSM911924gi|241988219|gb|AK335477.1|AK335477 HTC Triticum aestivum cDNA, clone: WT012_P23, cultivar: Chinese Spring.29290.01316.52.5
5'     TTTTGGAACGGAGGGAGTAGT        3'
||| ||||||||||o|||| |
3' TTATAAATCCTTGCCTCCTTCAT-ATACAATT 5'
1834Triticum aestivumCCGGACCAGGCTTCATTCCCAalignmentplotGSM911924gi|241987680|gb|AK334937.1|AK334937 HTC Triticum aestivum cDNA, clone: WT011_I24, cultivar: Chinese Spring.078904734730
5'     CCGGACCAGGCTTCATTCCCA        3'
|||||||||||||||||||||
3' CTTAGGCCTGGTCCGAAGTAAGGGTAGTAAAC 5'
1835Triticum aestivumTTTTGGTACAGAGGGAGTATTalignmentplotGSM911924gi|241983592|gb|AK331534.1|AK331534 HTC Triticum aestivum cDNA, clone: WT007_L23, cultivar: Chinese Spring.24620.01222.5
5'     TTTTGGTACAGAGGGAGTATT        3'
|||||| |||||oo||||||o
3' GAGGAAAACCTTGTCTTTCTCATAGAGACTTA 5'
1836Triticum aestivumTTTTGGGACAGAGGGAGTAGTalignmentplotGSM911924gi|241983592|gb|AK331534.1|AK331534 HTC Triticum aestivum cDNA, clone: WT007_L23, cultivar: Chinese Spring.24620.01222.5
5'     TTTTGGGACAGAGGGAGTAGT        3'
||||||o|||||oo||||| |
3' GAGGAAAACCTTGTCTTTCTCAT-AGAGACTT 5'
1837Triticum aestivumGTACTCCCTCCGTCCTAAAATalignmentplotGSM911924gi|241985579|gb|AK332840.1|AK332840 HTC Triticum aestivum cDNA, clone: WT005_A03, cultivar: Chinese Spring.216980.02223
5'     GTACTCCCTCCGTCCTAAAAT        3'
|||||||||||o| |o||| |
3' GAAACATGAGGGAGGTAAGGTTTCAATCATAT 5'
1838Triticum aestivumTTTTGGGACGGAGGGAGTATTalignmentplotGSM911924gi|241986137|gb|AK333398.1|AK333398 HTC Triticum aestivum cDNA, clone: WT006_G02, cultivar: Chinese Spring.226470663
5'     TTTTGGGACGGAGGGAGTATT        3'
|||||||||||||| |o||o
3' TCTTAAAACCCTGCCTCCATTATGTAATGTAA 5'
1839Triticum aestivumTTGGAGTGAAGGGAGCTCCAalignmentplotGSM911924gi|241989307|gb|AK336285.1|AK336285 HTC Triticum aestivum cDNA, clone: SET3_K24, cultivar: Chinese Spring.08610.0111114
5'     TTGGAGTGAAGGGAGCTCCA         3'
||||| ||||| | |||||
3' CCACAACCTGACTTCACACGAGGACAGCTTCC 5'
1840Triticum aestivumTTGGACTGAAGGGAGCTCCCTalignmentplotGSM911924gi|241989307|gb|AK336285.1|AK336285 HTC Triticum aestivum cDNA, clone: SET3_K24, cultivar: Chinese Spring.0861011113
5'     TTGGACTGAAGGGAGCTCCCT        3'
||||||||||| | ||||| |
3' CCACAACCTGACTTCACACGAGG-ACAGCTTC 5'
1841Triticum aestivumTGCGACAAGTAATTCCGAACGGAalignmentplotGSM911924gi|42391852|gb|AB161682.1|AB161682 PLN Triticum aestivum WCSP2 mRNA for cold shock domain protein 2, complete cds.28780.0326134
5'    TGCGACAAG-TAATTCCGAACGGA      3'
oo||||||| |||o| ||||||o|
3' GCTGTGCTGTTCTATTGAAGCTTGCTTGTTAT 5'
1842Triticum aestivumGATACTCCCTCCGTTCCTAAAalignmentplotGSM911924gi|241986835|gb|AK334096.1|AK334096 HTC Triticum aestivum cDNA, clone: WT009_G11, cultivar: Chinese Spring.110590444
5'     GATACTCCCTCCGTTCCTAAA        3'
|| | ||||||| ||| ||||
3' ATGTCTCT-AGGGAGGAAAGTATTTAAAAGAA 5'
1843Triticum aestivumTCCGGAGGGATTCCCTCCTTGalignmentplotGSM911924gi|21815|gb|X56803.1|X56803 PLN T.aestivum L. mRNA for ubiquitin.21090.02317.752.5
5'     TCCGGAGGGATTCCCTCCTTG        3'
||||| ||o|| |||||||||
3' GACCAGGCCCCCTTACGGGAGGAACAGGACCT 5'
1844Triticum aestivumAATTATGGAACGGAGGGAGTAalignmentplotGSM911924gi|32128877|gb|BT009326.1|BT009326 PLN Triticum aestivum clone wlm24.pk0016.f9:fis, full insert mRNA sequence.218800.03103.666673
5'     AATTATGGAACGGAGGGAGTA        3'
| ||| |||||||| ||||||
3' TTTATAAAT-CCTTGCCTACCTCATGATGTCT 5'
1845Triticum aestivumATTATGGGGCGGAGGGAGTalignmentplotGSM911924gi|241987774|gb|AK335031.1|AK335031 HTC Triticum aestivum cDNA, clone: WT011_N19, cultivar: Chinese Spring.228690221.5
5'     ATTATGGGGCGGAGGGAGT          3'
||| ||||o||||||||||
3' TGAATAAAACCCTGCCTCCCTCATGATGTATG 5'
1846Triticum aestivumATTTGGAACGGAGGGAGTACAalignmentplotGSM911924gi|241988553|gb|AK335810.1|AK335810 HTC Triticum aestivum cDNA, clone: WT013_N07, cultivar: Chinese Spring.26200.01333
5'     ATTTGGAACGGAGGGAGTACA        3'
|o|||||| |||||| o||||
3' ACGCTGAACCTTCCCTCCCGTATGTAAGGTCG 5'
1847Triticum aestivumTTTGGGACGGAGGGAGTACTAalignmentplotGSM911924gi|32128877|gb|BT009326.1|BT009326 PLN Triticum aestivum clone wlm24.pk0016.f9:fis, full insert mRNA sequence.218770.01122.42.5
5'     TTTGGGACGGAGGGAGTACTA        3'
|| ||o||||| |||||||||
3' TATAAATCCTTGCCTACCTCATGATGTCTGAC 5'
1848Triticum aestivumTTTGGGACGGAGGGAGTACTTalignmentplotGSM911924gi|241985579|gb|AK332840.1|AK332840 HTC Triticum aestivum cDNA, clone: WT005_A03, cultivar: Chinese Spring.21654094.51.5
5'     TTTGGGACGGAGGGAGTACTT        3'
|||||o|||||||||||| ||
3' GATAAAACCTTGCCTCCCTCATCAATAGTCCC 5'
1849Triticum aestivumCACTATATTTTGGAATGGAGGGAalignmentplotGSM911924gi|241989190|gb|AK336169.1|AK336169 HTC Triticum aestivum cDNA, clone: SET3_G10, cultivar: Chinese Spring.218590222.5
5'     CACTATATTTTGGAATGGAGGGA      3'
|| | ||||||o|||||||||||
3' CTCAGT-AGATAAAATCTTACCTCCCTCATGT 5'
1850Triticum aestivumCTCCGTCCCAAAATATAAGAAalignmentplotGSM911924gi|241989169|gb|AK336148.1|AK336148 HTC Triticum aestivum cDNA, clone: SET3_F15, cultivar: Chinese Spring.212060220.5
5'     CTCCGTCCCAAAATATAAGAA        3'
||||o||||||||||||||||
3' GAGGGAGGTAGGGTTTTATATTCTTACAAAAA 5'
1851Triticum aestivumACTCCCTCCATCCCATAATATalignmentplotGSM911924gi|241989169|gb|AK336148.1|AK336148 HTC Triticum aestivum cDNA, clone: SET3_F15, cultivar: Chinese Spring.212110221
5'     ACTCCCTCCATCCCATAATAT        3'
||||||||||||||| |||||
3' ATTATGAGGGAGGTAGGGTTTTATATTCTTAC 5'
1852Triticum aestivumTTTGGGACGGAGGGAGTACTAalignmentplotGSM911924gi|32129003|gb|BT009452.1|BT009452 PLN Triticum aestivum clone wlmk8.pk0022.f7:fis, full insert mRNA sequence.27910122.42.5
5'     TTTGGGACGGAGGGAGTACTA        3'
|| ||o|||||||||||| ||
3' TATAAATCCTTGCCTCCCTCATCATCTATCTC 5'
1853Triticum aestivumTATGGGACGGAGGGAGTAGTAalignmentplotGSM911924gi|32129003|gb|BT009452.1|BT009452 PLN Triticum aestivum clone wlmk8.pk0022.f7:fis, full insert mRNA sequence.27910122.41.5
5'     TATGGGACGGAGGGAGTAGTA        3'
|| ||o|||||||||||||||
3' ATAAAT-CCTTGCCTCCCTCATCATCTATCTC 5'
1854Triticum aestivumTATTATGGGACGGAGGGAGTAalignmentplotGSM911924gi|241989169|gb|AK336148.1|AK336148 HTC Triticum aestivum cDNA, clone: SET3_F15, cultivar: Chinese Spring.211480631
5'     TATTATGGGACGGAGGGAGTA        3'
|||| ||||||||||||||||
3' GAATATAAAACCCTGCCTCCCTCATGTTATGT 5'
1855Triticum aestivumAACATACTCCCTCCGTCCGGAalignmentplotGSM911924gi|1754996|gb|U48690.1|U48690 PLN Triticum aestivum calmodulin TaCaM2-1 mRNA, complete cds.29580.01213
5'     AACATACTCCCTCCGT-CCGGA       3'
||||||||||||||o| ||o |
3' GATGTTGTATGAGGGAGGTAAGGTATTACATC 5'
1856Triticum aestivumACCTGCTCCCTCCGTCCCATAalignmentplotGSM911924gi|1754996|gb|U48690.1|U48690 PLN Triticum aestivum calmodulin TaCaM2-1 mRNA, complete cds.29570.0252.53
5'     ACCTGCTCCCTCCGTCCCATA        3'
|| |o||||||||o| |||||
3' ATGTTGTATGAGGGAGGTAAGGTATTACATCA 5'
1857Triticum aestivumTTTTGGGACGGAGGGAGTATTalignmentplotGSM911924gi|241985579|gb|AK332840.1|AK332840 HTC Triticum aestivum cDNA, clone: WT005_A03, cultivar: Chinese Spring.216550631.5
5'     TTTTGGGACGGAGGGAGTATT        3'
||||||o|||||||||||| |
3' AGATAAAACCTTGCCTCCCTCATCAATAGTCC 5'
1858Triticum aestivumTTTTGGAACGGAGGGAGTAalignmentplotGSM911924gi|32128877|gb|BT009326.1|BT009326 PLN Triticum aestivum clone wlm24.pk0016.f9:fis, full insert mRNA sequence.218780.04316.52
5'     TTTTGGAACGGAGGGAGTA          3'
||| |||||||| ||||||
3' TTATAAATCCTTGCCTACCTCATGATGTCTGA 5'
1859Triticum aestivumACATTATGGAACGGAGGGAGTalignmentplotGSM911924gi|241983701|gb|AK331643.1|AK331643 HTC Triticum aestivum cDNA, clone: WT002_A06, cultivar: Chinese Spring.28660.02222.5
5'     ACATTATGGAACGGAGGGAGT        3'
|||| | |||||o||||||||
3' GGAATGTACTTCCTTGTCTCCCTCATACATTG 5'
1860Triticum aestivumCATTATGGAACGGAGGGAGTAalignmentplotGSM911924gi|241983701|gb|AK331643.1|AK331643 HTC Triticum aestivum cDNA, clone: WT002_A06, cultivar: Chinese Spring.28650.02332.5
5'     CATTATGGAACGGAGGGAGTA        3'
||| | |||||o|||||||||
3' GAATGTACTTCCTTGTCTCCCTCATACATTGT 5'
1861Triticum aestivumTGACATGGTTGGCCCATGGAAalignmentplotGSM911924gi|241988316|gb|AK335574.1|AK335574 HTC Triticum aestivum cDNA, clone: WT013_E02, cultivar: Chinese Spring.233310220
5'     TGACATGGTTGGCCCATGGAA        3'
|||||||||||||||||||||
3' CGGTACTGTACCAACCGGGTACCTTAGGCATC 5'
1862Triticum aestivumTTTGGGACGGAGGGAGTACTTalignmentplotGSM911924gi|241989169|gb|AK336148.1|AK336148 HTC Triticum aestivum cDNA, clone: SET3_F15, cultivar: Chinese Spring.211450.0114142
5'     TTTGGGACGGAGGGAGTACTT        3'
|||||||||||||||||||
3' TATAAAACCCTGCCTCCCTCATGTTATGTCGT 5'
1863Triticum aestivumGCTACTTCCTCCGTCCGAAAAalignmentplotGSM911924gi|32128634|gb|BT009083.1|BT009083 PLN Triticum aestivum clone wkm1c.pk0004.c7:fis, full insert mRNA sequence.29770552.5
5'     GCTACTTCCTCCGTCCGAAAA        3'
o|||||o|||||o|||| |||
3' TCGATGATGAGGGAGGTAGGCCTTTATGGACA 5'
1864Triticum aestivumTCCCTCCGTTCGGAATTACATalignmentplotGSM911924gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring.214130.05553.5
5'     TCCCTCCGTTCGGAATTACAT        3'
||||||||||| o|| || ||
3' TATGAGGGAGGCAAGGTTTTATCTACTGAGTT 5'
1865Triticum aestivumTTTTGGGACGGAGGGAGTATTalignmentplotGSM911924gi|32129003|gb|BT009452.1|BT009452 PLN Triticum aestivum clone wlmk8.pk0022.f7:fis, full insert mRNA sequence.27920.012552.5
5'     TTTTGGGACGGAGGGAGTATT        3'
||| ||o|||||||||||| |
3' TTATAAATCCTTGCCTCCCTCATCATCTATCT 5'
1866Triticum aestivumTTTTGGGACGGAGGGAGTATTalignmentplotGSM911924gi|241989169|gb|AK336148.1|AK336148 HTC Triticum aestivum cDNA, clone: SET3_F15, cultivar: Chinese Spring.211460221.5
5'     TTTTGGGACGGAGGGAGTATT        3'
|||||||||||||||||||o
3' ATATAAAACCCTGCCTCCCTCATGTTATGTCG 5'
1867Triticum aestivumTATATACTTCCTCCGTCCGGAalignmentplotGSM911924gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring.214200.03553
5'     TATATACTTCCTCCGT-CCGGA       3'
||o|||||o||||||| ||oo|
3' TTTCATGTATGAGGGAGGCAAGGTTTTATCTA 5'
1868Triticum aestivumTGCATTTGCACCTGCACCTalignmentplotGSM911924gi|241987674|gb|AK334931.1|AK334931 HTC Triticum aestivum cDNA, clone: WT011_I14, cultivar: Chinese Spring.19080.01664
5'     TGCATTTGCACCTGCACCT          3'
o| |o||||| || |||||
3' AGCAGCTTGAACGTCGA-GTGGAAGAACGGCG 5'
1869Triticum aestivumTCCGGAGGGATTCCCTCCTTGalignmentplotGSM911924gi|126544299|gb|AY297059.2|AY297059 PLN Triticum aestivum ubiquitin (WUB1) mRNA, complete cds.2107024749.42.5
5'     TCCGGAGGGATTCCCTCCTTG        3'
||||| ||o|| |||||||||
3' GACCAGGCCCCCTTACGGGAGGAACAGGACCT 5'
1870Triticum aestivumCTGCACTGCCTCTTCCCTGGCalignmentplotGSM911924gi|241986355|gb|AK333616.1|AK333616 HTC Triticum aestivum cDNA, clone: WT006_O16, cultivar: Chinese Spring.27280.01662.5
5'     CTGCACTGCCTCTTCCCTGGC        3'
||||||||||||o ||||| |
3' TCGTGACGTGACGGAGGTGGGACAGGAGCGGG 5'
1871Triticum aestivumTTTTGGTACAGAGGGAGTATTalignmentplotGSM911924gi|241988505|gb|AK335763.1|AK335763 HTC Triticum aestivum cDNA, clone: WT013_L12, cultivar: Chinese Spring.124460224
5'     TTTTGGTACAGAGGGAGTATT        3'
|||||| |||| |||||| |
3' GTCTAAAACC-TGTCACCCTCAATAGGTGAGT 5'
1872Triticum aestivumTTTTGGGACAGAGGGAGTATTalignmentplotGSM911924gi|241988505|gb|AK335763.1|AK335763 HTC Triticum aestivum cDNA, clone: WT013_L12, cultivar: Chinese Spring.124460.01224
5'     TTTTGGGACAGAGGGAGTATT        3'
|||| |||||| |||||| |
3' GTCTAAAA-CCTGTCACCCTCAATAGGTGAGT 5'
1873Triticum aestivumTTTTGGGACAGAGGGAGTATAalignmentplotGSM911924gi|241988505|gb|AK335763.1|AK335763 HTC Triticum aestivum cDNA, clone: WT013_L12, cultivar: Chinese Spring.124460.01224
5'     TTTTGGGACAGAGGGAGTATA        3'
||| |||||| |||||| ||
3' AGTCTAAAACCTGTCACCCTCA-ATAGGTGAG 5'
1874Triticum aestivumTTTGGATTGAAGGGAGCTCTGalignmentplotGSM911924gi|47680448|gb|AY615200.1|AY615200 PLN Triticum aestivum transcription factor Myb3 (Myb3) mRNA, complete cds.098801581582.5
5'     TTTGGATTGAAGGGAGCTCTG        3'
o||||| ||||||||||||oo
3' CATAGAACCTCACTTCCCTCGAGGTAGAAGTT 5'
1875Triticum aestivumATAGATGAGAAGGTAGATCAAalignmentplotGSM911924gi|241986778|gb|AK334039.1|AK334039 HTC Triticum aestivum cDNA, clone: WT008_P02, cultivar: Chinese Spring.26330.01332
5'     ATAGATGAGAAGGTAGATCAA        3'
|||||||| |||||||||| |
3' AGGATATCTACTGTTCCATCTAGCTTTGATTA 5'
1876Triticum aestivumTGTACTTCCTCCGTCCCAAAAalignmentplotGSM911924gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring.214180.0213132.5
5'     TGTACTTCCTCCGTCCCAAAA        3'
oo||||o||||||| ||||||
3' TCATGTATGAGGGAGGCAAGGTTTTATCTACT 5'
1877Triticum aestivumACTACTCCCTCCGTTCCTAAAalignmentplotGSM911924gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring.21418013132
5'     ACTACTCCCTCCGTTCCTAAA        3'
| ||||||||||||||| |||
3' CATGT-ATGAGGGAGGCAAGGTTTTATCTACT 5'
1878Triticum aestivumTTGGAGTGAAGGGAGCTCCAalignmentplotGSM911924gi|47680448|gb|AY615200.1|AY615200 PLN Triticum aestivum transcription factor Myb3 (Myb3) mRNA, complete cds.29870220
5'     TTGGAGTGAAGGGAGCTCCA         3'
||||||||||||||||||||
3' ATAGAACCTCACTTCCCTCGAGGTAGAAGTTT 5'
1879Triticum aestivumTTTGGGACGGAGGGAGTACTTalignmentplotGSM911924gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring.213490.0194.52.5
5'     TTTGGGACGGAGGGAGTACTT        3'
|||||o|||||||||||||
3' GATAAAACCTTGCCTCCCTCATGCTTTTAGTG 5'
1880Triticum aestivumCTCCGTCCCAAAATATAAGAAalignmentplotGSM911924gi|241986608|gb|AK333869.1|AK333869 HTC Triticum aestivum cDNA, clone: SET2_C23, cultivar: Chinese Spring.215060441
5'     CTCCGTCCCAAAATATAAGAA        3'
|||||||||| ||||||||||
3' GAGGGAGGCAGGGTATTATATTCTTGCAAAAA 5'
1881Triticum aestivumTGCAGTTGCTGTCTCAAGCTTalignmentplotGSM911924gi|161158849|gb|AM502905.1|AM502905 PLN Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM32B (WM32B gene).13300210.5
5'     TGCAGTTGCTGTCTCAAGCTT        3'
|||||||||||o|||||||||
3' CAGCACGTCAACGACGGAGTTCGAACGACGGA 5'
1882Triticum aestivumTGAGAAGGTAGATCATAATAGalignmentplotGSM911924gi|241986385|gb|AK333646.1|AK333646 HTC Triticum aestivum cDNA, clone: WT006_P22, cultivar: Chinese Spring.0579019193.5
5'     TGAGAAGGTAGATCATAATAG        3'
|||| ||| ||||||o ||||
3' TAGTACTC-TCCCTCTAGTGCTATCGAGACCT 5'
1883Triticum aestivumTGAGAAGGTAGATCATAATAGCalignmentplotGSM911924gi|241988983|gb|AK330205.1|AK330205 HTC Triticum aestivum cDNA, clone: SET3_O05, cultivar: Chinese Spring.26740.05553
5'     TGAGAAGGTAGATCATAATAGC       3'
||||||||||||||| ||o o|
3' ATCTACTCTTCCATCTAGTTTTGATGACTATT 5'
1884Triticum aestivumTTAGATGAGAAGGCAGATCATAalignmentplotGSM911924gi|241988983|gb|AK330205.1|AK330205 HTC Triticum aestivum cDNA, clone: SET3_O05, cultivar: Chinese Spring.26790.0414143
5'     TTAGATGAGAAGGCAGATCATA       3'
|||||||||||| |||||| |
3' AGGATATCTACTCTTCCATCTAGTTTTGATGA 5'
1885Triticum aestivumCGTCGAGGAGGAGCTCGAGTGalignmentplotGSM911924gi|241983622|gb|AK331564.1|AK331564 HTC Triticum aestivum cDNA, clone: WT007_N04, cultivar: Chinese Spring.08460.0116164
5'     CGTCGAGGAGGAGCTCGAGTG        3'
|| ||||||||||| ||| |
3' GCGTCCA-CTCCTCCTCGACCTCCCGCTCCCC 5'
1886Triticum aestivumAATTATGGAACGGAGGGAGTGalignmentplotGSM911924gi|241987650|gb|AK334907.1|AK334907 HTC Triticum aestivum cDNA, clone: WT011_H08, cultivar: Chinese Spring.217770.0182.666672.5
5'     AATTATGGAACGGAGGGAGTG        3'
| ||| ||||||||||||||o
3' TTTATAAAT-CCTTGCCTCCCTCATGTAGGTA 5'
1887Triticum aestivumATTATGGGACGGAGGGAGTalignmentplotGSM911924gi|241987650|gb|AK334907.1|AK334907 HTC Triticum aestivum cDNA, clone: WT011_H08, cultivar: Chinese Spring.217760.05412.5
5'     ATTATGGGACGGAGGGAGT          3'
||| ||o|||||||||||
3' TTATAAAT-CCTTGCCTCCCTCATGTAGGTAT 5'
1888Triticum aestivumTGCCAAAGGAGAATTGCCCTalignmentplotGSM911924gi|241986872|gb|AK334133.1|AK334133 HTC Triticum aestivum cDNA, clone: WT009_M15, cultivar: Chinese Spring.24510.04222.5
5'     TGCCAAAGGAGAATTGCCCT         3'
|| |||||o||||| |||||
3' AAAAACAGTTTCTTCTTATCGGGAACTTCATT 5'
1889Triticum aestivumTTACTCCCTCCGTCCCACAATalignmentplotGSM911924gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring.214170.02443
5'     TTACTCCCTCCGTCCCACAAT        3'
|||||||||||| ||| |||
3' CATGTATGAGGGAGGCAAGGTTTTATCTACTG 5'
1890Triticum aestivumATACTCCCTCCGTCCTCGAAAalignmentplotGSM911924gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring.214170442.5
5'     ATACTCCCTCCGTCCTCGAAA        3'
||||||||||||| | |o|||
3' CATGTATGAGGGAGGCAAG-GTTTTATCTACT 5'
1891Triticum aestivumATACTCCCTCTGTCCCAAATAalignmentplotGSM911924gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring.214170442.5
5'     ATACTCCCTCTGTCCCAAATA        3'
||||||||||o|| ||||| |
3' CATGTATGAGGGAGGCAAGGTTT-TATCTACT 5'
1892Triticum aestivumTTTTGGGACGGAGGGAGTATTalignmentplotGSM911924gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring.213500632
5'     TTTTGGGACGGAGGGAGTATT        3'
||||||o||||||||||||o
3' AGATAAAACCTTGCCTCCCTCATGCTTTTAGT 5'
1893Triticum aestivumTAGATACCTCCGTATCTAGACalignmentplotGSM911924gi|241987805|gb|AK335062.1|AK335062 HTC Triticum aestivum cDNA, clone: WT011_P12, cultivar: Chinese Spring.218550.04223.5
5'     TAGATACCTCCGTATCTAGAC        3'
||o|o||||||o |||||||
3' TGTTATTTGTGGAGGTTCAGATCTGTCTATTT 5'
1894Triticum aestivumTTTGGGACGGAGGGAGTACTTalignmentplotGSM911924gi|241987650|gb|AK334907.1|AK334907 HTC Triticum aestivum cDNA, clone: WT011_H08, cultivar: Chinese Spring.217740122.42.5
5'     TTTGGGACGGAGGGAGTACTT        3'
|| ||o||||||||||||| |
3' TATAAATCCTTGCCTCCCTCATGTAGGTATGT 5'
1895Triticum aestivumTATGGGACGGAGGGAGTATTTalignmentplotGSM911924gi|241987650|gb|AK334907.1|AK334907 HTC Triticum aestivum cDNA, clone: WT011_H08, cultivar: Chinese Spring.217740.02122.43
5'     TATGGGACGGAGGGAGTATTT        3'
|| ||o||||||||||||o |
3' ATAAAT-CCTTGCCTCCCTCATGTAGGTATGT 5'
1896Triticum aestivumGCCCTCAAAGGCTTCGAACCGalignmentplotGSM911924gi|241990729|gb|AK330885.1|AK330885 HTC Triticum aestivum cDNA, clone: SET5_I22, cultivar: Chinese Spring.25520.01222.5
5'     GCCCTCAAAGGCTTCGAACCG        3'
||||||||||||o ||||||
3' GGTACGGGAGTTTCCGGCGCTTGGGGGAAACC 5'
1897Triticum aestivumAGATGTACTCCCTCCGTCCGAalignmentplotGSM911924gi|241983674|gb|AK331616.1|AK331616 HTC Triticum aestivum cDNA, clone: WT007_P05, cultivar: Chinese Spring.252540332.5
5'     AGATGTACTCCCTCCGTCCGA        3'
||o||||||||||||||||
3' ATGTAGTATATGAGGGAGGCAGGCTTTTTCGA 5'
1898Triticum aestivumTTTGGGACGGAGGGAGTACTAalignmentplotGSM911924gi|241986678|gb|AK333939.1|AK333939 HTC Triticum aestivum cDNA, clone: WT008_P05, cultivar: Chinese Spring.218010178.52.5
5'     TTTGGGACGGAGGGAGTACTA        3'
|| ||o|||||||||||| ||
3' TATAAATCCTTGCCTCCCTCAT-ATACTATGA 5'
1899Triticum aestivumTTTGGGACGGAGGGAGTACATalignmentplotGSM911924gi|241986678|gb|AK333939.1|AK333939 HTC Triticum aestivum cDNA, clone: WT008_P05, cultivar: Chinese Spring.218010178.52.5
5'     TTTGGGACGGAGGGAGTACAT        3'
|| ||o|||||||||||| ||
3' TATAAATCCTTGCCTCCCTCATATACTATGAT 5'
1900Triticum aestivumTATGGGACGGAGGGAGTATTTalignmentplotGSM911924gi|241986678|gb|AK333939.1|AK333939 HTC Triticum aestivum cDNA, clone: WT008_P05, cultivar: Chinese Spring.218010178.52.5
5'     TATGGGACGGAGGGAGTATTT        3'
|| ||o||||||||||||| |
3' ATAAAT-CCTTGCCTCCCTCATATACTATGAT 5'
1901Triticum aestivumTATTTGTTTACAGAGGGAGTTalignmentplotGSM911924gi|241988346|gb|AK335604.1|AK335604 HTC Triticum aestivum cDNA, clone: WT013_F06, cultivar: Chinese Spring.223790.02882
5'     TATTTGTTTACAGAGGGAGTT        3'
|||| |||||||||||||||
3' GAATATAATCAAATGTCTCCCTCATTATGCGT 5'
1902Triticum aestivumCTCCGTTCCTAAATATAAGTCalignmentplotGSM911924gi|241985433|gb|AK332693.1|AK332693 HTC Triticum aestivum cDNA, clone: WT004_K03, cultivar: Chinese Spring.212700.05333.5
5'     CTCCGTTCCTAAATATAAGTC        3'
|||||||| ||||||o |||
3' GAGGGAGGCAAGTATTTATGAACAGAAAGAAG 5'
1903Triticum aestivumTATATTTTGGGACGGAGGGAGalignmentplotGSM911924gi|241985433|gb|AK332693.1|AK332693 HTC Triticum aestivum cDNA, clone: WT004_K03, cultivar: Chinese Spring.211420.01332.5
5'     TATATTTTGGGACGGAGGGAG        3'
|||||| ||o||||||||||
3' CTGTTTATAAATCCTTGCCTCCCTCATTTTGC 5'
1904Triticum aestivumTCCCTCCGTTCGGAATTACTTalignmentplotGSM911924gi|241985433|gb|AK332693.1|AK332693 HTC Triticum aestivum cDNA, clone: WT004_K03, cultivar: Chinese Spring.212730.01552.5
5'     TCCCTCCGTTCGGAATTACTT        3'
|||||||||||o || |||||
3' GATGAGGGAGGCAAGTATTTATGAACAGAAAG 5'
1905Triticum aestivumTGTACTTCCTCCGTCCCAAAAalignmentplotGSM911924gi|241983674|gb|AK331616.1|AK331616 HTC Triticum aestivum cDNA, clone: WT007_P05, cultivar: Chinese Spring.25251016162
5'     TGTACTTCCTCCGTCCCAAAA        3'
|o||||o||||||||| ||||
3' TAGTATATGAGGGAGGCAGGCTTTTTCGAACA 5'
1906Triticum aestivumTGTACTCCCTCCGTTCCTAAAalignmentplotGSM911924gi|241983674|gb|AK331616.1|AK331616 HTC Triticum aestivum cDNA, clone: WT007_P05, cultivar: Chinese Spring.252510.0116162.5
5'     TGTACTCCCTCCGTTCCTAAA        3'
|o|||||||||||| || |||
3' TAGTATATGAGGGAGGCA-GGCTTTTTCGAAC 5'
1907Triticum aestivumACTACTCCCTCCGTTCCTAAAalignmentplotGSM911924gi|241983674|gb|AK331616.1|AK331616 HTC Triticum aestivum cDNA, clone: WT007_P05, cultivar: Chinese Spring.252510.0116163.5
5'     ACTACTCCCTCCGTTCCTAAA        3'
| ||||||||||||o| |||
3' AGTAT-ATGAGGGAGGCAGGCTTTTTCGAACA 5'
1908Triticum aestivumAATTATGGAACGGAGGGAGTGalignmentplotGSM911924gi|241985433|gb|AK332693.1|AK332693 HTC Triticum aestivum cDNA, clone: WT004_K03, cultivar: Chinese Spring.211400.01882.5
5'     AATTATGGAACGGAGGGAGTG        3'
| ||| ||||||||||||||o
3' TTTATAAAT-CCTTGCCTCCCTCATTTTGCGT 5'
1909Triticum aestivumTAGATACATCCGTATGTAGACalignmentplotGSM911924gi|241985433|gb|AK332693.1|AK332693 HTC Triticum aestivum cDNA, clone: WT004_K03, cultivar: Chinese Spring.211880.0473.53
5'     TAGATACATCCGTATGTAGAC        3'
|| ||||||||||||||||
3' ACAGATGTATGTAGGCATACATCATCAGTAAA 5'
1910Triticum aestivumTATTATGGGACGGAGGGAGTAalignmentplotGSM911924gi|241990551|gb|AK330708.1|AK330708 HTC Triticum aestivum cDNA, clone: SET5_B19, cultivar: Chinese Spring.232190632.5
5'     TATTATGGGACGGAGGGAGTA        3'
|||| ||||||o| |||||||
3' GAATATAAAACCCTGTCCCCCTCATCGTCTGT 5'
1911Triticum aestivumTTATTTTGGGACGGAGGGAGTalignmentplotGSM911924gi|241990551|gb|AK330708.1|AK330708 HTC Triticum aestivum cDNA, clone: SET5_B19, cultivar: Chinese Spring.232200.03212.5
5'     TTATTTTGGGACGGAGGGAGT        3'
|||||||||||o| ||||||
3' AGAATATAAAACCCTGTCCCCCTCATCGTCTG 5'
1912Triticum aestivumTATTTGTTTACAGAGGGAGTTalignmentplotGSM911924gi|241990576|gb|AK330733.1|AK330733 HTC Triticum aestivum cDNA, clone: SET5_C19, cultivar: Chinese Spring.22132011112
5'     TATTTGTTTACAGAGGGAGTT        3'
|||| |||||||||||||||
3' GAATATAATCAAATGTCTCCCTCATTATTAAA 5'
1913Triticum aestivumTTTTGGGACGGAGGGAGTATTalignmentplotGSM911924gi|241987650|gb|AK334907.1|AK334907 HTC Triticum aestivum cDNA, clone: WT011_H08, cultivar: Chinese Spring.217750.03316.53
5'     TTTTGGGACGGAGGGAGTATT        3'
||| ||o||||||||||||o
3' TTATAAATCCTTGCCTCCCTCATGTAGGTATG 5'
1914Triticum aestivumAATTATGGAACGGAGGGAGTGalignmentplotGSM911924gi|241986968|gb|AK334229.1|AK334229 HTC Triticum aestivum cDNA, clone: WT009_K22, cultivar: Chinese Spring.217390.01552.5
5'     AATTATGGAACGGAGGGAGTG        3'
| ||| ||||||||||||||o
3' TTCATAAAT-CCTTGCCTCCCTCATATGTAGT 5'
1915Triticum aestivumATAGCATCATCCATCCTACCAalignmentplotGSM911924gi|241989083|gb|AK336062.1|AK336062 HTC Triticum aestivum cDNA, clone: SET3_C06, cultivar: Chinese Spring.0619032324
5'     ATAGCATCATCCATC-CTACCA       3'
|| |||||||||||| | |||
3' TTTGTAACGTAGTAGGTAGTGTTGGAGGTTTG 5'
1916Triticum aestivumAATTATGGAACGGAGGGAGTAalignmentplotGSM911924gi|241983524|gb|AK331464.1|AK331464 HTC Triticum aestivum cDNA, clone: WT007_J01, cultivar: Chinese Spring.210000.0317173
5'     AATTATGGAACGGAGGGAGTA        3'
| ||| |||||| ||||||||
3' AATATAAAT-CCTTGCATCCCTCATAAAACGT 5'
1917Triticum aestivumGTACTCCCTCCGTCCTAAAATalignmentplotGSM911924gi|241983674|gb|AK331616.1|AK331616 HTC Triticum aestivum cDNA, clone: WT007_P05, cultivar: Chinese Spring.252500.02332.5
5'     GTACTCCCTCCGTCCTAAAAT        3'
o|||||||||||||| ||||
3' AGTATATGAGGGAGGCAGGCTTTTTCGAACAG 5'
1918Triticum aestivumATACTCCCTCCGTCCCGAATTalignmentplotGSM911924gi|241983674|gb|AK331616.1|AK331616 HTC Triticum aestivum cDNA, clone: WT007_P05, cultivar: Chinese Spring.252500.02333
5'     ATACTCCCTCCGTCCCGAATT        3'
||||||||||||||| |||
3' AGTATATGAGGGAGGCAGG-CTTTTTCGAACA 5'
1919Triticum aestivumGATACTCCCTCCGTTCCTAAAalignmentplotGSM911924gi|241987616|gb|AK334873.1|AK334873 HTC Triticum aestivum cDNA, clone: WT011_F13, cultivar: Chinese Spring.222920.02223
5'     GATACTCCCTCCGTTCCTAAA        3'
o||||||| |||||o|| |||
3' CGCTTTATGAGGTAGGCAGGGTTTTATCGAAC 5'
1920Triticum aestivumCTGCACTGCCTCTTCCCTGGCalignmentplotGSM911924gi|241986083|gb|AK333344.1|AK333344 HTC Triticum aestivum cDNA, clone: WT006_D23, cultivar: Chinese Spring.25040221
5'     CTGCACTGCCTCTTCCCTGGC        3'
||||||||||||| |||||||
3' ACTGGACGTGACGGAGACGGGACCGTGCGGGC 5'
1921Triticum aestivumTACTCCCTCCATCCCAAAATAalignmentplotGSM911924gi|241990523|gb|AK330680.1|AK330680 HTC Triticum aestivum cDNA, clone: SET1_G09, cultivar: Chinese Spring.25570.03553
5'     TACTCCCTCCATCCCAAAATA        3'
|||||||||||||| || ||
3' TATCATGAGGGAGGTAGGCCTTAATGAACAGC 5'
1922Triticum aestivumTTTTGGGACGGAGGGAGTATTalignmentplotGSM911924gi|241983524|gb|AK331464.1|AK331464 HTC Triticum aestivum cDNA, clone: WT007_J01, cultivar: Chinese Spring.29980.0152262.5
5'     TTTTGGGACGGAGGGAGTATT        3'
||| ||o||| ||||||||||
3' ATATAAATCCTTGCATCCCTCATAAAACGTCG 5'
1923Triticum aestivumTAGTGATCTAAACACTCTTAalignmentplotGSM911924gi|241987799|gb|AK335056.1|AK335056 HTC Triticum aestivum cDNA, clone: WT011_P07, cultivar: Chinese Spring.016510774
5'     TAGTGATCTAAACACTCTTA         3'
o|o|| ||o||||| ||o||
3' ACGCGTTACAAGGTTTGT-AGGATCTGTTGTT 5'
1924Triticum aestivumATAGCATCATCCATCCTACCAalignmentplotGSM911924gi|241987514|gb|AK334771.1|AK334771 HTC Triticum aestivum cDNA, clone: WT011_A02, cultivar: Chinese Spring.0156109699694
5'     ATAGCATCATCCATCCTACCA        3'
|||||||||||||| | ||
3' CCTGTATCGTAGTAGGTAAGCCGGGTACGACG 5'
1925Triticum aestivumTTTTGGGACGGAGGGAGTACAalignmentplotGSM911924gi|241985433|gb|AK332693.1|AK332693 HTC Triticum aestivum cDNA, clone: WT004_K03, cultivar: Chinese Spring.211380.01316.52.5
5'     TTTTGGGACGGAGGGAGTACA        3'
||| ||o|||||||||||| |
3' TTATAAATCCTTGCCTCCCTCATTTTGCGTTT 5'
1926Triticum aestivumAAACTTACTTCCTCCGTCCAAalignmentplotGSM911924gi|241989807|gb|AK330348.1|AK330348 HTC Triticum aestivum cDNA, clone: SET4_D21, cultivar: Chinese Spring.11333014144
5'     AAACTTACTTCCTCCGTCCAA        3'
||||| |||||||| ||||
3' TAGGGTTGAAAGAAGGAGG-AGGTGAGGGGCG 5'
1927Triticum aestivumTAGTACAAAGTTGAGTCATCalignmentplotGSM911924gi|241985398|gb|AK332658.1|AK332658 HTC Triticum aestivum cDNA, clone: SET1_N24, cultivar: Chinese Spring.010120.0118184
5'     TAGTACAAAGTTGAGTCATC         3'
||| ||||||| |oo||||
3' GGTTTTCA-GTTTCAAGTTGGTAGGTCTGGAT 5'
1928Triticum aestivumTGGAGTGGAGTGGAGTGGAGTalignmentplotGSM911924gi|60100211|gb|AY781347.1|AY781347 PLN Triticum aestivum putative Zn-finger transcription factor mRNA, partial cds.2610041.333330
5'     TGGAGTGGAGTGGAGTGGAGT        3'
|||||||||||||||||||||
3' TATGACCTCACCTCACCTCACCTCATCATAAA 5'
1929Triticum aestivumTTTTGGGACGGAGGGAGTATTalignmentplotGSM911924gi|241986968|gb|AK334229.1|AK334229 HTC Triticum aestivum cDNA, clone: WT009_K22, cultivar: Chinese Spring.217370.04992.5
5'     TTTTGGGACGGAGGGAGTATT        3'
||| ||o|||||||||||||
3' TCATAAATCCTTGCCTCCCTCATATGTAGTTC 5'
1930Triticum aestivumTTTTGGAACGGAGGGAGTAGTalignmentplotGSM911924gi|241986968|gb|AK334229.1|AK334229 HTC Triticum aestivum cDNA, clone: WT009_K22, cultivar: Chinese Spring.217370.01992
5'     TTTTGGAACGGAGGGAGTAGT        3'
||| ||||||||||||||| |
3' TCATAAATCCTTGCCTCCCTCAT-ATGTAGTT 5'
1931Triticum aestivumTTTTGGGACGGAGGGAGTATTalignmentplotGSM911924gi|241988920|gb|AK330142.1|AK330142 HTC Triticum aestivum cDNA, clone: SET3_L15, cultivar: Chinese Spring.218040331.5
5'     TTTTGGGACGGAGGGAGTATT        3'
||||||o|||||o||||||o|
3' AGATAAAACCTTGCCTTCCTCATGAATGAACG 5'
1932Triticum aestivumGCTCCCTCCGTCCCATAATATalignmentplotGSM911924gi|241983639|gb|AK331581.1|AK331581 HTC Triticum aestivum cDNA, clone: SET1_J20, cultivar: Chinese Spring.26080.05333.5
5'     GCTCCCTCCGTCCCATAATAT        3'
o|||||||||| ||| ||||
3' ATGGTGAGGGAGGCAAGGTTTTATCTACTGAG 5'
1933Triticum aestivumTGAAGCTGCCAGCATGATCTAalignmentplotGSM911924gi|241987072|gb|AK334329.1|AK334329 HTC Triticum aestivum cDNA, clone: WT009_L17, cultivar: Chinese Spring.03124037374
5'     TGAAGCTGCCAGCATGATCTA        3'
||||||||||| ||||||
3' TTTATGTTCGACGGTCGGACTAGAACGTCCCA 5'
1934Triticum aestivumTATTATGGGACGGAGGGAGTAalignmentplotGSM911924gi|32128647|gb|BT009096.1|BT009096 PLN Triticum aestivum clone wkm2c.pk005.g2:fis, full insert mRNA sequence.28030.03882.5
5'     TATTATGGGACGGAGGGAGTA        3'
|| | |||o||||||||||||
3' GCTCATTAAACCTTGCCTCCCTCATCGTCCTT 5'
1935Triticum aestivumCATTATGGGACGGAGGGAGTAalignmentplotGSM911924gi|32128647|gb|BT009096.1|BT009096 PLN Triticum aestivum clone wkm2c.pk005.g2:fis, full insert mRNA sequence.28030882.5
5'     CATTATGGGACGGAGGGAGTA        3'
||| |||o||||||||||||
3' CTCATTAA-ACCTTGCCTCCCTCATCGTCCTT 5'
1936Triticum aestivumTTGACCAAGTTTATAGAGAAAalignmentplotGSM911924gi|241987295|gb|AK334552.1|AK334552 HTC Triticum aestivum cDNA, clone: WT010_E13, cultivar: Chinese Spring.215150.02222.5
5'     TTGACCAAGTTTATAGAGAAA        3'
|||||| ||||||||o ||||
3' TCTTAACTGG-TCAAATATTCCTTTTGATCGG 5'
1937Triticum aestivumTTTGGGACGGAGGGAGTACTTalignmentplotGSM911924gi|32128647|gb|BT009096.1|BT009096 PLN Triticum aestivum clone wkm2c.pk005.g2:fis, full insert mRNA sequence.28000.05223
5'     TTTGGGACGGAGGGAGTACTT        3'
|||||o|||||||||||| o
3' CATTAAACCTTGCCTCCCTCATCGTCCTTCGT 5'
1938Triticum aestivumAGAGTTACTCCCTCCGTCCGGalignmentplotGSM911924gi|241987171|gb|AK334428.1|AK334428 HTC Triticum aestivum cDNA, clone: WT009_L10, cultivar: Chinese Spring.217500221.5
5'    AG-AGTTACTCCCTCCGTCCGG        3'
|| ||o||||||||||||||||
3' CAATCGTCGATGAGGGAGGCAGGCCTTTATGA 5'
1939Triticum aestivumTTACTCCCTCCGTCCCACAATalignmentplotGSM911924gi|241983639|gb|AK331581.1|AK331581 HTC Triticum aestivum cDNA, clone: SET1_J20, cultivar: Chinese Spring.26100.01773
5'     TTACTCCCTCCGTCCCACAAT        3'
oo||||||||||| ||| |||
3' TGATGGTGAGGGAGGCAAGGTTTTATCTACTG 5'
1940Triticum aestivumAGGATCTTGATGATGCTGCAGalignmentplotGSM911924gi|241983258|gb|AK331198.1|AK331198 HTC Triticum aestivum cDNA, clone: SET6_M01, cultivar: Chinese Spring.0144902822823.5
5'     AGGATCTTGATGATGCTGCAG        3'
|o||| |||||||||||| |
3' CCACCCTTAGCACTACTACGACGCCGACGACG 5'
1941Triticum aestivumTAGCCAAGGATGATTTGCCalignmentplotGSM911924gi|32129093|gb|BT009542.1|BT009542 PLN Triticum aestivum clone wr1.pk0153.c7:fis, full insert mRNA sequence.07770148742
5'     TAGCCAAGGATGATTTGCC          3'
|||||||||||| |||||
3' TTATTTCGGTTCCTACTCAACGGACTGGTGTG 5'
1942Triticum aestivumCTACTCCCTCCGTTCGAAAalignmentplotGSM911924gi|241988536|gb|AK335793.1|AK335793 HTC Triticum aestivum cDNA, clone: WT013_M16, cultivar: Chinese Spring.29680.05222.5
5'     CTACTCCCTCCGTTCGAAA          3'
||||||||||||||o ||
3' CATATATGAGGGAGGCAAGTATTTGTTCACTG 5'
1943Triticum aestivumATACTCCCTCCGTCCCATAATalignmentplotGSM911924gi|241988536|gb|AK335793.1|AK335793 HTC Triticum aestivum cDNA, clone: WT013_M16, cultivar: Chinese Spring.29680223
5'     ATACTCCCTCCGTCCCATAAT        3'
||||||||||||| ||||||
3' CATATATGAGGGAGGCAAGGTATTTTTCACTG 5'
1944Triticum aestivumTGTACTCCCTCCGTTCCTAAAalignmentplotGSM911924gi|241988536|gb|AK335793.1|AK335793 HTC Triticum aestivum cDNA, clone: WT013_M16, cultivar: Chinese Spring.29690441.5
5'     TGTACTCCCTCCGTTCCTAAA        3'
|o|||||||||||||| ||||
3' ACATATATGAGGGAGGCAAGTATTTGTTCACT 5'
1945Triticum aestivumACTACTCCCTCCGTTCCTAAAalignmentplotGSM911924gi|241988536|gb|AK335793.1|AK335793 HTC Triticum aestivum cDNA, clone: WT013_M16, cultivar: Chinese Spring.29690442
5'     ACTACTCCCTCCGTTCCTAAA        3'
| |||||||||||||| ||||
3' CATAT-ATGAGGGAGGCAAGTATTTGTTCACT 5'
1946Triticum aestivumTTTTGGGACGGAGGGAGTATTalignmentplotGSM911924gi|241983639|gb|AK331581.1|AK331581 HTC Triticum aestivum cDNA, clone: SET1_J20, cultivar: Chinese Spring.25310332
5'     TTTTGGGACGGAGGGAGTATT        3'
||||||o|||||||||||| o
3' AGATAAAACCTTGCCTCCCTCATCGTACCTTC 5'
1947Triticum aestivumTTTTGGGACGGAGGGAGTATTalignmentplotGSM911924gi|32128647|gb|BT009096.1|BT009096 PLN Triticum aestivum clone wkm2c.pk005.g2:fis, full insert mRNA sequence.28010.05333
5'     TTTTGGGACGGAGGGAGTATT        3'
|||||o|||||||||||| o
3' TCATTAAACCTTGCCTCCCTCATCGTCCTTCG 5'
1948Vitis viniferaGGAATCTTGATGATGCTGCAGalignmentplotGSM458931-2730VIT_19s0014g04430.t01 cdna:novel chromosome:IGGP_12x:19:4714589:4721730:-1 gene:VIT_19s0014g04430 transcript:VIT_19s0014g04430.t23360.0320.43.5
5'     GGAATCTTGATGATGCTGCAG        3'
||||||||||||| | |o ||
3' CAGACCTTAGAACTACTTCTATTTCTTCCGGA 5'
1949Vitis viniferaTGGATGCAGCGGTTCATCGATalignmentplotGSM458931-2730VIT_06s0004g04240.t01 cdna:novel chromosome:IGGP_12x:6:5192100:5192872:1 gene:VIT_06s0004g04240 transcript:VIT_06s0004g04240.t0125090.05214
5'     TGGATGCAGCGGTTCATCGAT        3'
| |||| ||| |||||| |||
3' CAGCAACTACTTCGACAAGTA-CTAGGGGTAC 5'
1950Vitis viniferaTCCAAAGGGATCGCATTGATCalignmentplotGSM458931-2730VIT_14s0068g01330.t01 cdna:novel chromosome:IGGP_12x:14:25056097:25060280:1 gene:VIT_14s0068g01330 transcript:VIT_14s0068g01330.119370221
5'     TCCAAAGGGATCGCATTGATC        3'
|||||||||||||||||| ||
3' CTGTAGGTTTCCCTAGCGTAAC-AGAGTATGA 5'
1951Vitis viniferaTTGGCATTCTGTCCACCTCCalignmentplotGSM458931-2730VIT_01s0010g03730.t01 cdna:novel chromosome:IGGP_12x:1:21087951:21095392:1 gene:VIT_01s0010g03730 transcript:VIT_01s0010g03730.t112090221
5'     TTGGCATTCTGTCCACCTCC         3'
||||||||||||| ||||||
3' TACAAACCGTAAGACAGTTGGAGGAAGGTGTT 5'
1952Vitis viniferaGGCATGTGTGGGGCATAATAGalignmentplotGSM458931-2730VIT_09s0070g00320.t01 cdna:novel chromosome:IGGP_12x:9:13450437:13452476:1 gene:VIT_09s0070g00320 transcript:VIT_09s0070g00320.t116250.04213.5
5'     GGCATGTGTGGGGCATAATAG        3'
|| ||| |||||o||||| ||
3' GCTTCCCTAC-CACCCTGTATTTTCTTTGAGA 5'
1953Vitis viniferaTGAATCTTGATGATGCTACACalignmentplotGSM458931-2730VIT_01s0010g03600.t01 cdna:novel chromosome:IGGP_12x:1:20940834:20943043:1 gene:VIT_01s0010g03600 transcript:VIT_01s0010g03600.t17150.01223
5'     TGAATCTTGATGATGCTACAC        3'
|||||| |||||||| | |||
3' TTAGACTTAG-ACTACTACTAAGTGGTCGTCT 5'
1954Vitis viniferaTGGAGAAGCAGGGCACGTGCAalignmentplotGSM458931-2730VIT_14s0108g01070.t01 cdna:novel chromosome:IGGP_12x:14:29705236:29707523:1 gene:VIT_14s0108g01070 transcript:VIT_14s0108g01070.18260222
5'     TGGAGAAGCAGGGCACGTGCA        3'
|||||||||||| |||||| |
3' ACCAACCTCTTCGTCCAGTGCAC-TCTGCTCA 5'
1955Vitis viniferaTTGACAGAAGATAGAGAGCACalignmentplotGSM458931-2730VIT_01s0010g03710.t01 cdna:novel chromosome:IGGP_12x:1:21064260:21071687:-1 gene:VIT_01s0010g03710 transcript:VIT_01s0010g03710.115450221
5'     TTGACAGAAGATAGAGAGCAC        3'
||||||||||| |||||||||
3' AAGCAACTGTCTTCTCTCTCTCGTGCTGCTTC 5'
1956Vitis viniferaTTGACAGAAGATAGAGAGCACalignmentplotGSM458931-2730VIT_01s0010g03910.t01 cdna:novel chromosome:IGGP_12x:1:21412823:21416284:-1 gene:VIT_01s0010g03910 transcript:VIT_01s0010g03910.19260222
5'     TTGACAGAAGATAGAGAGCAC        3'
|||||||||| |||||||||
3' CCGCTACTGTCTTCTCTCTCTCGTGCTAGTCT 5'
1957Vitis viniferaTCGGACCAGGCTTCATTCCalignmentplotGSM458931-2730VIT_04s0008g03250.t01 cdna:novel chromosome:IGGP_12x:4:2700630:2709554:-1 gene:VIT_04s0008g03250 transcript:VIT_04s0008g03250.t025650211
5'     TCGGACCAGGCTTCATTCC          3'
o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTCCGTAAAC 5'
1958Vitis viniferaTCGGACCAGGCTTCATTCCCCalignmentplotGSM458931-2730VIT_04s0008g03250.t01 cdna:novel chromosome:IGGP_12x:4:2700630:2709554:-1 gene:VIT_04s0008g03250 transcript:VIT_04s0008g03250.t025650212.5
5'     TCGGACCAGGCTTCATTCCCC        3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAAA 5'
1959Vitis viniferaTGCCTGGCTCCCTGTATGCCAalignmentplotGSM458931-2730VIT_13s0019g04380.t01 cdna:novel chromosome:IGGP_12x:13:5744428:5747932:-1 gene:VIT_13s0019g04380 transcript:VIT_13s0019g04380.t115180221
5'     TGCCTGGCTCCCTGTATGCCA        3'
||||||||||||||||||||
3' TCGTACGGACCGAGGGACATACGGACGTCCTT 5'
1960Vitis viniferaGCCTGGCTCCCCTGTATGCCalignmentplotGSM458931-2730VIT_13s0019g04380.t01 cdna:novel chromosome:IGGP_12x:13:5744428:5747932:-1 gene:VIT_13s0019g04380 transcript:VIT_13s0019g04380.t115180221
5'     GCCTGGCTCCCCTGTATGCC         3'
|||||||| |||||||||||
3' CGTACGGACCGA-GGGACATACGGACGTCCTT 5'
1961Vitis viniferaTGACAACGAGAGAGAGCACGCalignmentplotGSM458931-2730VIT_01s0010g03910.t01 cdna:novel chromosome:IGGP_12x:1:21412823:21416284:-1 gene:VIT_01s0010g03910 transcript:VIT_01s0010g03910.19240.02223
5'    TGACA-ACGAGAGAGAGCACGC        3'
||||| | |||||||||||||
3' GCTACTGTCTTCTCTCTCTCGTGCTAGTCTTG 5'
1962Vitis viniferaTCCAAAGGGATCGCATTGATCalignmentplotGSM458931-2730VIT_07s0104g01320.t01 cdna:novel chromosome:IGGP_12x:7:2351619:2357500:1 gene:VIT_07s0104g01320 transcript:VIT_07s0104g01320.t01115180221
5'     TCCAAAGGGATCGCATTGATC        3'
|||||||||||||||||| ||
3' CTGTAGGTTTCCCTAGCGTAAC-AGAGGTCGA 5'
1963Vitis viniferaTTAGATTCACGCACAAACTCGalignmentplotGSM458931-2730VIT_10s0042g01150.t01 cdna:novel chromosome:IGGP_12x:10:15100682:15105025:1 gene:VIT_10s0042g01150 transcript:VIT_10s0042g01150.131030211
5'     TTAGATTCACGCACAAACTCG        3'
||||||||||||||||||||
3' GGGTAATCTAAGTGCGTGTTTGAGGAAATGAT 5'
1964Vitis viniferaTCTTTCCTACTCCTCCCATTCCalignmentplotGSM458931-2730VIT_18s0072g01090.t01 cdna:novel chromosome:IGGP_12x:18:20663924:20666589:1 gene:VIT_18s0072g01090 transcript:VIT_18s0072g01090.12360221.5
5'     TCTTTCCTACTCCTCCCATTCC       3'
||||||||||o||||| |||||
3' TTTTAGAAAGGATGGGGAGGATAAGGTAAGTA 5'
1965Vitis viniferaTGACAGAGGAGAGTGAGCACalignmentplotGSM458931-2730VIT_01s0010g03910.t01 cdna:novel chromosome:IGGP_12x:1:21412823:21416284:-1 gene:VIT_01s0010g03910 transcript:VIT_01s0010g03910.19250.01221.5
5'     TGACAGAGGAGAGTGAGCAC         3'
|||||||o||||| ||||||
3' CGCTACTGTCTTCTCTCTCTCGTGCTAGTCTT 5'
1966Vitis viniferaTTTCCGACTCGCACTCATGCCGTalignmentplotGSM458931-2730VIT_19s0085g00460.t01 cdna:novel chromosome:IGGP_12x:19:22836679:22837347:1 gene:VIT_19s0085g00460 transcript:VIT_19s0085g00460.14580212.5
5'     TTTCCGACTCGCACTCATGCCGT      3'
|||||||||| |||| |||||o|
3' GGAAAAAGGCTGAG-GTGAATACGGTACTATA 5'
1967Vitis viniferaTTGACAGAAGATAGAGAGCACalignmentplotGSM458931-2730VIT_11s0065g00170.t01 cdna:novel chromosome:IGGP_12x:11:13588641:13607268:-1 gene:VIT_11s0065g00170 transcript:VIT_11s0065g00170111600221
5'     TTGACAGAAGATAGAGAGCAC        3'
||||||||||| |||||||||
3' AATCAACTGTCTTCTCTCTCTCGTGCGGCCTT 5'
1968Vitis viniferaTCTTGCTCAAATGAGTGTTCCAalignmentplotGSM458931-2730VIT_00s0341g00050.t01 cdna:novel chromosome:IGGP_12x:Un:24415587:24430691:-1 gene:VIT_00s0341g00050 transcript:VIT_00s0341g00050111270221.5
5'     TCTTGCTCAAATGAGTGTTCCA       3'
||||||||||||||| o|||||
3' TCAAAGAACGAGTTTACTCTTAAGGTCATCAA 5'
1969Vitis viniferaTTTGGATTGAAGGGAGCTCalignmentplotGSM458931-2730VIT_13s0067g01630.t01 cdna:novel chromosome:IGGP_12x:13_random:914710:922589:-1 gene:VIT_13s0067g01630 transcript:VIT_13s0067g01113810.03222
5'     TTTGGATTGAAGGGAGCTC          3'
||||| ||||||||||||
3' TCTATAACCTCACTTCCCTCGAGGTTGAAGTG 5'
1970Vitis viniferaCTTGGAGTGAAGGGAGCTCTCalignmentplotGSM458931-2730VIT_13s0067g01630.t01 cdna:novel chromosome:IGGP_12x:13_random:914710:922589:-1 gene:VIT_13s0067g01630 transcript:VIT_13s0067g01113810222
5'     CTTGGAGTGAAGGGAGCTCTC        3'
|||||||||||||||||| |
3' TCTATAACCTCACTTCCCTCGAG-GTTGAAGT 5'
1971Vitis viniferaAAGCTCAGGAGGGATAGCGCCalignmentplotGSM458931-2730VIT_12s0059g01410.t01 cdna:novel chromosome:IGGP_12x:12:6340188:6340705:1 gene:VIT_12s0059g01410 transcript:VIT_12s0059g01410.t012110221.5
5'     AAGCTCAGGAGGGATAGCGCC        3'
|||||||||||o|||| ||||
3' CTGATTCGAGTCCTCTCTATAGCGGAATGGGA 5'
1972Vitis viniferaTCTTGCTCAAATGAGTGTTCCAalignmentplotGSM458931-2730VIT_17s0000g08480.t01 cdna:novel chromosome:IGGP_12x:17:9703427:9704324:-1 gene:VIT_17s0000g08480 transcript:VIT_17s0000g08480.t13190221
5'     TCTTGCTCAAATGAGTGTTCCA       3'
| ||||||||||||||||||||
3' TCGAAAAACGAGTTTACTCACAAGGTTACCAA 5'
1973Vitis viniferaTAGCCAAGGATGACTTGCCTGalignmentplotGSM458931-2730VIT_06s0004g02270.t01 cdna:novel chromosome:IGGP_12x:6:2680757:2687576:1 gene:VIT_06s0004g02270 transcript:VIT_06s0004g02270.t01011460223.5
5'     TAGCCAAGGATGACTTGCCTG        3'
|||||||o|||| ||||| |
3' TCGTTTCGGTTCTTACTAAACGG-CGGGTCGT 5'
1974Vitis viniferaGAGCCAAGGATGACTTGCCGTalignmentplotGSM458931-2730VIT_06s0004g02270.t01 cdna:novel chromosome:IGGP_12x:6:2680757:2687576:1 gene:VIT_06s0004g02270 transcript:VIT_06s0004g02270.t01011460222.5
5'     GAGCCAAGGATGACTTGCCGT        3'
o|||||||o|||| ||||||o
3' TCGTTTCGGTTCTTACTAAACGGCGGGTCGTT 5'
1975Vitis viniferaTGGTTGAGCCGCGCCAATATCalignmentplotGSM458931-2730VIT_04s0023g01380.t01 cdna:novel chromosome:IGGP_12x:4:17877548:17879580:-1 gene:VIT_04s0023g01380 transcript:VIT_04s0023g01380.16670220.5
5'     TGGTTGAGCCGCGCCAATATC        3'
||o||||||||||||||||||
3' GGCAACTAACTCGGCGCGGTTATAGCGGACTC 5'
1976Vitis viniferaCTTCTTCCTCTTCCTCTTCGGalignmentplotGSM458931-2730VIT_08s0007g02200.t01 cdna:novel chromosome:IGGP_12x:8:16234222:16238500:1 gene:VIT_08s0007g02200 transcript:VIT_08s0007g02200.t25220.0221.333332.5
5'     CTTCTTCCTCTTCCTCTTCGG        3'
|o||o|||||||||||o|| |
3' AGGAGGAGGAGGAGAAGGAGGAGACGTGAGAG 5'
1977Vitis viniferaTGGATGCAGCGGTTCATCGATalignmentplotGSM458931-2730VIT_06s0004g04230.t01 cdna:novel chromosome:IGGP_12x:6:5187608:5188059:1 gene:VIT_06s0004g04230 transcript:VIT_06s0004g04230.t0122660.02214
5'     TGGATGCAGCGGTTCATCGAT        3'
| |||| ||| |||||| |||
3' CAGCAACTACTTCGACAAGTA-CTAGGGGTAC 5'
1978Vitis viniferaTTGGACTGAAGGGAGCTCCalignmentplotGSM458931-2730VIT_10s0003g03910.t01 cdna:novel chromosome:IGGP_12x:10:6666005:6668779:-1 gene:VIT_10s0003g03910 transcript:VIT_10s0003g03910.t117950.03222.5
5'     TTGGACTGAAGGGAGCTCC          3'
||||||||||||| |o||
3' TCTTAACCTGACTTCCCAGGGGGATAACTTTG 5'
1979Vitis viniferaTTGGACTGAAGGGAGCTCCCTalignmentplotGSM458931-2730VIT_10s0003g03910.t01 cdna:novel chromosome:IGGP_12x:10:6666005:6668779:-1 gene:VIT_10s0003g03910 transcript:VIT_10s0003g03910.t117950.02223
5'     TTGGACTGAAGGGAGCTCCCT        3'
||||||||||||| | ||||
3' TCTTAACCTGACTTCCCAGG-GGGATAACTTT 5'
1980Vitis viniferaGGAATCTTGATGATGCTGCAGalignmentplotGSM458931-2730VIT_19s0014g04590.t01 cdna:novel chromosome:IGGP_12x:19:4900009:4902808:-1 gene:VIT_19s0014g04590 transcript:VIT_19s0014g04590.t24650.0120.43.5
5'     GGAATCTTGATGATGCTGCAG        3'
||||||||||||| | |o ||
3' CAGACCTTAGAACTACTTCTATTTCTTCCGGA 5'
1981Vitis viniferaTCGGACCAGGCTTCATTCCalignmentplotGSM458931-2730VIT_13s0019g04320.t01 cdna:novel chromosome:IGGP_12x:13:5642849:5655110:1 gene:VIT_13s0019g04320 transcript:VIT_13s0019g04320.t015800221
5'     TCGGACCAGGCTTCATTCC          3'
o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTCCTTAGAC 5'
1982Vitis viniferaTCGGACCAGGCTTCATTCCCCalignmentplotGSM458931-2730VIT_13s0019g04320.t01 cdna:novel chromosome:IGGP_12x:13:5642849:5655110:1 gene:VIT_13s0019g04320 transcript:VIT_13s0019g04320.t015800222.5
5'     TCGGACCAGGCTTCATTCCCC        3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTCCTTAGA 5'
1983Vitis viniferaATGCACTGCCTCTTCCCTGGCalignmentplotGSM458931-2730VIT_05s0020g03180.t01 cdna:novel chromosome:IGGP_12x:5:4942932:4943720:1 gene:VIT_05s0020g03180 transcript:VIT_05s0020g03180.t0114330.05223.5
5'     ATGCACTGCCTCTTCCCTGGC        3'
| |||||| |||o| ||||||
3' GCGGTTCGTGAC-GAGGAAGGACCGGTTGAAC 5'
1984Vitis viniferaTTAGATTCACGCACAAACTCGalignmentplotGSM458931-2730VIT_10s0042g01180.t01 cdna:novel chromosome:IGGP_12x:10:15146895:15151231:1 gene:VIT_10s0042g01180 transcript:VIT_10s0042g01180.229890211
5'     TTAGATTCACGCACAAACTCG        3'
||||||||||||||||||||
3' GGGTAATCTAAGTGCGTGTTTGAGGAAATGAT 5'
1985Vitis viniferaTTGAGCCGTGCCAATATCATGalignmentplotGSM458931-2730VIT_15s0048g00270.t01 cdna:novel chromosome:IGGP_12x:15:14396828:14399794:-1 gene:VIT_15s0048g00270 transcript:VIT_15s0048g00270115880.02223
5'     TTGAGCCGTGCCAATATCATG        3'
||||||||o||||||||| o
3' CACTAACTCGGCGCGGTTATAGGGAACGCGCT 5'
1986Vitis viniferaTTGACAGAAGATAGAGAGCACalignmentplotGSM458931-2730VIT_12s0028g03350.t01 cdna:novel chromosome:IGGP_12x:12:4108335:4110142:-1 gene:VIT_12s0028g03350 transcript:VIT_12s0028g03350.t16240.02223
5'     TTGACAGAAGATAGAGAGCAC        3'
|||||||||| ||||||||
3' GTGTTACTGTCTTCTCTCTCTCGTACGACCAC 5'
1987Vitis viniferaTTCCACAGCTTTCTTGAACTalignmentplotGSM458931-2730VIT_09s0002g01350.t01 cdna:novel chromosome:IGGP_12x:9:1135177:1136542:1 gene:VIT_09s0002g01350 transcript:VIT_09s0002g01350.t0104060222
5'    TTCCACA-GCTTTCTTGAACT         3'
||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCCAAAAACG 5'
1988Vitis viniferaCAGCATCATCAAGATTCCCACalignmentplotGSM458931-2730VIT_05s0020g00670.t01 cdna:novel chromosome:IGGP_12x:5:2540079:2542121:1 gene:VIT_05s0020g00670 transcript:VIT_05s0020g00670.t0128170.0221.53.5
5'     CAGCATCATCAAGATTCCCAC        3'
||||||||o|| || |||||
3' TCTGGTCGTAGTGGTACTCCGGGTGGTTAGTG 5'
1989Vitis viniferaTAGCCAAGGATGACTTGCCTGalignmentplotGSM458931-2730VIT_08s0007g08250.t01 cdna:novel chromosome:IGGP_12x:8:21597124:21603336:1 gene:VIT_08s0007g08250 transcript:VIT_08s0007g08250.t115130222.5
5'     TAGCCAAGGATGACTTGCCTG        3'
|||||||o|||| |||||||
3' TATGTTCGGTTCTTACTAAACGGACTTTTATG 5'
1990Vitis viniferaGAGCCAAGGATGACTTGCCGTalignmentplotGSM458931-2730VIT_08s0007g08250.t01 cdna:novel chromosome:IGGP_12x:8:21597124:21603336:1 gene:VIT_08s0007g08250 transcript:VIT_08s0007g08250.t115130223
5'     GAGCCAAGGATGACTTGCCGT        3'
o|||||||o|||| ||||| |
3' TATGTTCGGTTCTTACTAAACGG-ACTTTTAT 5'
1991Vitis viniferaTGACAACGAGAGAGAGCACGCalignmentplotGSM458931-2730VIT_12s0028g03350.t01 cdna:novel chromosome:IGGP_12x:12:4108335:4110142:-1 gene:VIT_12s0028g03350 transcript:VIT_12s0028g03350.t16220223
5'    TGACA-ACGAGAGAGAGCACGC        3'
||||| | ||||||||||| ||
3' GTTACTGTCTTCTCTCTCTCGTACGACCACCC 5'
1992Vitis viniferaTGGAGAAGCAGGGCACGTGCAalignmentplotGSM458931-2730VIT_19s0027g00230.t01 cdna:novel chromosome:IGGP_12x:19:18785292:18790096:-1 gene:VIT_19s0027g00230 transcript:VIT_19s0027g0023016380222.5
5'     TGGAGAAGCAGGGCACGTGCA        3'
o||||||||||||||| |||
3' TATAGCCTCTTCGTCCCGTGAACGAGTATAAG 5'
1993Vitis viniferaTTGACAGAAGATAGAGAGCACalignmentplotGSM458931-2730VIT_10s0003g00050.t01 cdna:novel chromosome:IGGP_12x:10:1346397:1348736:1 gene:VIT_10s0003g00050 transcript:VIT_10s0003g00050.t015790222
5'     TTGACAGAAGATAGAGAGCAC        3'
||||||| ||||||||||||
3' CTCTAACTGTCCTCTATCTCTCGTATGATCTA 5'
1994Vitis viniferaTGCCTGGCTCCCTGTATGCCAalignmentplotGSM458931-2730VIT_08s0040g01810.t01 cdna:novel chromosome:IGGP_12x:8:12924098:12929097:1 gene:VIT_08s0040g01810 transcript:VIT_08s0040g01810.t221380210.5
5'     TGCCTGGCTCCCTGTATGCCA        3'
||||||||||||||o||||||
3' TCGTACGGACCGAGGGACGTACGGTCGTCCTT 5'
1995Vitis viniferaGCCTGGCTCCCCTGTATGCCalignmentplotGSM458931-2730VIT_08s0040g01810.t01 cdna:novel chromosome:IGGP_12x:8:12924098:12929097:1 gene:VIT_08s0040g01810 transcript:VIT_08s0040g01810.t221380211.5
5'     GCCTGGCTCCCCTGTATGCC         3'
|||||||| |||||o|||||
3' CGTACGGACCGA-GGGACGTACGGTCGTCCTT 5'
1996Vitis viniferaTGACAGAAGATAGAGAGCACalignmentplotGSM458931-2730VIT_10s0003g00050.t01 cdna:novel chromosome:IGGP_12x:10:1346397:1348736:1 gene:VIT_10s0003g00050 transcript:VIT_10s0003g00050.t015780222
5'     TGACAGAAGATAGAGAGCAC         3'
|||||| ||||||||||||
3' TCTAACTGTCCTCTATCTCTCGTATGATCTAT 5'
1997Vitis viniferaTGACAGAGGAGAGTGAGCACalignmentplotGSM458931-2730VIT_12s0028g03350.t01 cdna:novel chromosome:IGGP_12x:12:4108335:4110142:-1 gene:VIT_12s0028g03350 transcript:VIT_12s0028g03350.t16230.01222.5
5'     TGACAGAGGAGAGTGAGCAC         3'
|||||||o||||| |||||
3' TGTTACTGTCTTCTCTCTCTCGTACGACCACC 5'
1998Vitis viniferaTTGGACTGAAGGGAGCTCCTalignmentplotGSM458931-2730VIT_19s0014g01680.t01 cdna:novel chromosome:IGGP_12x:19:1805453:1807492:1 gene:VIT_19s0014g01680 transcript:VIT_19s0014g01680.t0110920.01223
5'     TTGGACTGAAGGGAGCTCCT         3'
o|||||||||||| |o|||
3' CAACGACCTGACTTCCCCAGGGGAGACTCTTA 5'
1999Vitis viniferaTTGGACTGAAGGGAGCTCCCTalignmentplotGSM458931-2730VIT_19s0014g01680.t01 cdna:novel chromosome:IGGP_12x:19:1805453:1807492:1 gene:VIT_19s0014g01680 transcript:VIT_19s0014g01680.t0110920.03223.5
5'     TTGGACTGAAGGGAGCTCCCT        3'
o|||||||||||| | ||||
3' CAACGACCTGACTTCCCCAG-GGGAGACTCTT 5'
2000Vitis viniferaTTCCACAGCTTTCTTGAACTalignmentplotGSM458931-2730VIT_02s0025g04910.t01 cdna:novel chromosome:IGGP_12x:2:4421526:4422809:1 gene:VIT_02s0025g04910 transcript:VIT_02s0025g04910.t0115800.01222
5'    TTCCACA-GCTTTCTTGAACT         3'
||||||| ||||||||||||
3' TCGAAGGTGTACGAAAGAACTTGCGACTGCCG 5'
2001Vitis viniferaTGGAGAAGCAGGGCACGTGCAalignmentplotGSM458931-2730VIT_17s0000g06400.t01 cdna:novel chromosome:IGGP_12x:17:6977372:6979197:1 gene:VIT_17s0000g06400 transcript:VIT_17s0000g06400.t019390221
5'     TGGAGAAGCAGGGCACGTGCA        3'
||||||||||||||||||| |
3' CCCAACCTCTTCGTCCCGTGCAC-TCCACTAA 5'
2002Vitis viniferaTGGAGAAGCAGGGCACATGCTalignmentplotGSM458931-2730VIT_17s0000g06400.t01 cdna:novel chromosome:IGGP_12x:17:6977372:6979197:1 gene:VIT_17s0000g06400 transcript:VIT_17s0000g06400.t019390.02223
5'     TGGAGAAGCAGGGCACATGCT        3'
|||||||||||||||| ||
3' CCCAACCTCTTCGTCCCGTGCACTCCACTAAC 5'
2003Vitis viniferaTCTTGCTCAAATGAGTGTTCCAalignmentplotGSM458931-2730VIT_14s0066g01220.t01 cdna:novel chromosome:IGGP_12x:14:27708124:27709246:-1 gene:VIT_14s0066g01220 transcript:VIT_14s0066g0122013190.01221
5'     TCTTGCTCAAATGAGTGTTCCA       3'
| ||||||||||||||||||||
3' TCGAAAAACGAGTTTACTCACAAGGTCATCAA 5'
2004Vitis viniferaTGTGGTATTGGTTCGGCTCATCalignmentplotGSM458931-2730VIT_17s0000g08890.t01 cdna:novel chromosome:IGGP_12x:17:10362993:10368115:1 gene:VIT_17s0000g08890 transcript:VIT_17s0000g08890.124140.02223.5
5'     TGTGGTATTGGTTCGGCTCATC       3'
|||||o|||| || |||| |||
3' GACGACACCGTAAC-AACCCGACTAGACCTTT 5'
2005Vitis viniferaGAGCCAAGGATGACTTGCCGGalignmentplotGSM458931-2730VIT_01s0011g05560.t01 cdna:novel chromosome:IGGP_12x:1:5284036:5288161:-1 gene:VIT_01s0011g05560 transcript:VIT_01s0011g05560.t0111580.05223.5
5'     GAGCCAAGGATGACTTGCCGG        3'
|||||||||||| |||| o|
3' TTGGCTCGGTTCCTACGAAACGCTCGAACTCC 5'
2006Vitis viniferaTGAGCCAAGGATGGCTTGCCGalignmentplotGSM458931-2730VIT_01s0011g05560.t01 cdna:novel chromosome:IGGP_12x:1:5284036:5288161:-1 gene:VIT_01s0011g05560 transcript:VIT_01s0011g05560.t0111590.04223.5
5'     TGAGCCAAGGATGGCTTGCCG        3'
o|||||||||||| |||| |
3' TTTGGCTCGGTTCCTACGAAACG-CTCGAACT 5'
2007Vitis viniferaTGAAGCTGCCAGCATGATCTGalignmentplotGSM458931-2730VIT_04s0079g00200.t01 cdna:novel chromosome:IGGP_12x:4:10432267:10448180:1 gene:VIT_04s0079g00200 transcript:VIT_04s0079g00200.t21883021.333334
5'     TGAAGCTGCCAGCATGATCTG        3'
||||||||||| ||||||
3' TTTATGTTCGACGGTCGGACTAGAGTCTCCCA 5'
2008Vitis viniferaTAGCGAAGGATGACTTGCCTAalignmentplotGSM458931-2730VIT_11s0016g01480.t01 cdna:novel chromosome:IGGP_12x:11:1176254:1181820:1 gene:VIT_11s0016g01480 transcript:VIT_11s0016g01480.t0112500.03223.5
5'     TAGCGAAGGATGACTTGCCTA        3'
||| |||||||| |||||o|
3' TTGTTTCGGTTCCTACTTAACGGGTCTGGTCA 5'
2009Vitis viniferaTGCCTGGCTCCCTGTATGCCAalignmentplotGSM458931-2730VIT_06s0004g02750.t01 cdna:novel chromosome:IGGP_12x:6:3443777:3447902:1 gene:VIT_06s0004g02750 transcript:VIT_06s0004g02750.t01213320211
5'     TGCCTGGCTCCCTGTATGCCA        3'
||||||||||||||||||||
3' TCGTACGGACCGAGGGACATACGGACGTCCTC 5'
2010Vitis viniferaGCCTGGCTCCCCTGTATGCCalignmentplotGSM458931-2730VIT_06s0004g02750.t01 cdna:novel chromosome:IGGP_12x:6:3443777:3447902:1 gene:VIT_06s0004g02750 transcript:VIT_06s0004g02750.t01213320211
5'     GCCTGGCTCCCCTGTATGCC         3'
|||||||| |||||||||||
3' CGTACGGACCGA-GGGACATACGGACGTCCTC 5'
2011Vitis viniferaTTCCACAGCTTTCTTGAACTalignmentplotGSM458931-2730VIT_16s0098g01080.t01 cdna:novel chromosome:IGGP_12x:16:21346622:21349185:-1 gene:VIT_16s0098g01080 transcript:VIT_16s0098g0108016920222
5'    TTCCACA-GCTTTCTTGAACT         3'
||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCCCCAGCCG 5'
2012Vitis viniferaTTGACAGAAGATAGAGAGCACalignmentplotGSM458931-2730VIT_01s0011g00130.t01 cdna:novel chromosome:IGGP_12x:1:231616:236216:1 gene:VIT_01s0011g00130 transcript:VIT_01s0011g00130.t01110930221.5
5'     TTGACAGAAGATAGAGAGCAC        3'
o|||||||||| |||||||||
3' ACTCGACTGTCTTCTCTCTCTCGTGTTAACCT 5'
2013Vitis viniferaGGCATGTGTGGGGCATAATAGalignmentplotGSM458931-2730VIT_02s0033g01110.t01 cdna:novel chromosome:IGGP_12x:2:16327359:16335347:1 gene:VIT_02s0033g01110 transcript:VIT_02s0033g01110.t28690213.5
5'     GGCATGTGTGGGGCATAATAG        3'
|| ||| |||||o||||| ||
3' GCTTCCCTAC-CACCCTGTATTTTCGTTGAGA 5'
2014Vitis viniferaCTTGGAGTGAAGGGAGCTCTCalignmentplotGSM458931-2730VIT_03s0038g01150.t01 cdna:novel chromosome:IGGP_12x:3:880653:881315:-1 gene:VIT_03s0038g01150 transcript:VIT_03s0038g01150.t0112410.04223.5
5'     CTTGGAGTGAAGGGAGCTCTC        3'
|||||o||||||| ||| ||
3' TTCGAAACCTTACTTCCCACGA-AGTTCATAC 5'
2015Vitis viniferaTTTCCCAGACCCCCAATACCAAalignmentplotGSM458931-2730VIT_12s0028g00710.t01 cdna:novel chromosome:IGGP_12x:12:1264959:1267086:-1 gene:VIT_12s0028g00710 transcript:VIT_12s0028g00710.t213800.01214
5'     TTTCCCAGACCCCCAATACCAA       3'
|||||||o|||| | |o||| |
3' ACGGAAAGGGTTTGGGAGGTGTGGGTGGGAAG 5'
2016Vitis viniferaTTCCACAGCTTTCTTGAACTalignmentplotGSM458931-2730VIT_16s0039g01450.t01 cdna:novel chromosome:IGGP_12x:16:975988:979958:1 gene:VIT_16s0039g01450 transcript:VIT_16s0039g01450.t0113980222
5'    TTCCACA-GCTTTCTTGAACT         3'
||||||| ||||||||||||
3' ACTAAGGTGTCCGAAAGAACTTGCCAACGCCG 5'
2017Vitis viniferaGAATCTTGATGATGCTCCATCalignmentplotGSM458931-2730VIT_19s0177g00100.t01 cdna:novel chromosome:IGGP_12x:19:5929703:5931655:1 gene:VIT_19s0177g00100 transcript:VIT_19s0177g00100.t014240.03223
5'     GAATCTTGATGATGCTCCATC        3'
|||||||||| || |||| ||
3' GGTACTTAGAACTA-TAGGAGGAAGAAGTGTT 5'
2018Vitis viniferaTTCCACAGCTTTCTTGAACTalignmentplotGSM458931-2730VIT_02s0012g02250.t01 cdna:novel chromosome:IGGP_12x:2:9137736:9153313:-1 gene:VIT_02s0012g02250 transcript:VIT_02s0012g02250.t011390.04222
5'     TTCCACAGCTTTCTTGAACT         3'
|||||||o||||||oo|||o
3' GTGGAAGGTGTTGAAAGAGTTTGGTAAGGTTT 5'
2019Vitis viniferaTCGGACCAGGCTTCATTCCalignmentplotGSM458931-2730VIT_06s0004g02800.t01 cdna:novel chromosome:IGGP_12x:6:3508029:3516493:-1 gene:VIT_06s0004g02800 transcript:VIT_06s0004g02800.t015790221
5'     TCGGACCAGGCTTCATTCC          3'
o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTCCGTAGAC 5'
2020Vitis viniferaTCGGACCAGGCTTCATTCCCCalignmentplotGSM458931-2730VIT_06s0004g02800.t01 cdna:novel chromosome:IGGP_12x:6:3508029:3516493:-1 gene:VIT_06s0004g02800 transcript:VIT_06s0004g02800.t015790.01222.5
5'     TCGGACCAGGCTTCATTCCCC        3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAGA 5'
2021Vitis viniferaGGCTGCTGAGAAAATGTAGGAalignmentplotGSM458931-2730VIT_07s0031g01230.t01 cdna:novel chromosome:IGGP_12x:7:17320663:17322941:1 gene:VIT_07s0031g01230 transcript:VIT_07s0031g01230.t1650221
5'     GGCTGCTGAGAAAATGTAGGA        3'
|||||||||||||||| ||||
3' CAAACCGACGACTCTTTTAC-TCCTGCTTCCC 5'
2022Vitis viniferaTTTCCCAGACCCCCAATACCAAalignmentplotGSM458931-2730VIT_02s0012g01990.t01 cdna:novel chromosome:IGGP_12x:2:8633024:8634459:-1 gene:VIT_02s0012g01990 transcript:VIT_02s0012g01990.t016210.03214
5'     TTTCCCAGACCCCCAATACCAA       3'
|||||||o|||| | |o||| |
3' ACGGAAAGGGTTTGGGAGGTGTGGGTTGGTGG 5'
2023Vitis viniferaTCGGACCAGGCTTCATTCCalignmentplotGSM458931-2730VIT_09s0002g03740.t01 cdna:novel chromosome:IGGP_12x:9:3414759:3424840:-1 gene:VIT_09s0002g03740 transcript:VIT_09s0002g03740.t0211100210.5
5'     TCGGACCAGGCTTCATTCC          3'
o||||||||||||||||||
3' CTTAGGCCTGGTCCGAAGTAAGGTCCGTAAAC 5'
2024Vitis viniferaTCTTGCTCAAATGAGTGTTCCAalignmentplotGSM458931-2730VIT_09s0002g01380.t01 cdna:novel chromosome:IGGP_12x:9:1161830:1162708:1 gene:VIT_09s0002g01380 transcript:VIT_09s0002g01380.t0114110221.5
5'     TCTTGCTCAAATGAGTGTTCCA       3'
||||||||||||||| o|||||
3' TAAAAGAACGAGTTTACTCTTAAGGTCATCAA 5'
2025Vitis viniferaTTCCACAGCTTTCTTGAACTalignmentplotGSM458931-2730VIT_02s0025g02680.t01 cdna:novel chromosome:IGGP_12x:2:2331487:2332154:1 gene:VIT_02s0025g02680 transcript:VIT_02s0025g02680.t0103250222
5'    TTCCACA-GCTTTCTTGAACT         3'
||||||| ||||||||||||
3' GTTAAGGTGTCCGAAAGAACTTGCCCCAGCCG 5'
2026Vitis viniferaTTCCACAGCTTTCTTGAACTalignmentplotGSM458931-2730VIT_11s0016g01250.t01 cdna:novel chromosome:IGGP_12x:11:1000358:1001752:1 gene:VIT_11s0016g01250 transcript:VIT_11s0016g01250.t003540222
5'    TTCCACA-GCTTTCTTGAACT         3'
||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCCAAAGACG 5'
2027Vitis viniferaTTGGATTGAAGGGAGCTCTAalignmentplotGSM458931-2730VIT_18s0001g08020.t01 cdna:novel chromosome:IGGP_12x:18:6473675:6486586:1 gene:VIT_18s0001g08020 transcript:VIT_18s0001g08020.t0114330.05223
5'     TTGGATTGAAGGGAGCT-CTA        3'
o||o||||||||||o|| |o|
3' TTACGACTTAACTTCCCTTGACGGTGTAGGTT 5'
2028Vitis viniferaTTGACAGAAGATAGAGAGCACalignmentplotGSM458931-2730VIT_17s0000g05020.t01 cdna:novel chromosome:IGGP_12x:17:5506041:5513173:1 gene:VIT_17s0000g05020 transcript:VIT_17s0000g05020.t0015670222
5'     TTGACAGAAGATAGAGAGCAC        3'
|||||||||| |||||||||
3' ACTCTACTGTCTTCTCTCTCTCGTGCTGGTCT 5'
2029Vitis viniferaTCCAAAGGGATCGCATTGATCalignmentplotGSM458931-2730VIT_14s0030g01240.t01 cdna:novel chromosome:IGGP_12x:14:5731297:5735020:1 gene:VIT_14s0030g01240 transcript:VIT_14s0030g01240.t0118600221
5'     TCCAAAGGGATCGCATTGATC        3'
|||||||||||||||||| ||
3' CTGTAGGTTTCCCTAGCGTAAC-AGAGGTCGA 5'
2030Vitis viniferaTTCCACAGCTTTCTTGAACTalignmentplotGSM458931-2730VIT_07s0191g00220.t01 cdna:novel chromosome:IGGP_12x:7:15016666:15018416:-1 gene:VIT_07s0191g00220 transcript:VIT_07s0191g00220.15040.05222.5
5'     TTCCACAGCTTTCTTGAACT         3'
|||||||||||o||||| |
3' AACAAAGGTGTCGAAGGAACTCAAAACGGAGG 5'
2031Vitis viniferaCTTGGAGTGAAGGGAGCTCTCalignmentplotGSM458931-2730VIT_17s0000g02950.t01 cdna:novel chromosome:IGGP_12x:17:2721139:2722142:-1 gene:VIT_17s0000g02950 transcript:VIT_17s0000g02950.t25880.01213.5
5'     CTTGGAGTGAAGGGAGCTCTC        3'
| |||||||| ||||o| |||
3' GTAAGTACCTCACTACCCTTG-GAGAGTCGTA 5'
2032Vitis viniferaTAGCGAAGGATGACTTGCCTAalignmentplotGSM458931-2730VIT_09s0002g01590.t01 cdna:novel chromosome:IGGP_12x:9:1383432:1390944:1 gene:VIT_09s0002g01590 transcript:VIT_09s0002g01590.t01113270.02223.5
5'     TAGCGAAGGATGACTTGCCTA        3'
o||| ||||||||||| || |
3' TTGTGTCGGTTCCTACTGAAAGGTTCCCTGTG 5'
2033Vitis viniferaTTCCACAGCTTTCTTGAACTalignmentplotGSM458931-2730VIT_15s0048g01740.t01 cdna:novel chromosome:IGGP_12x:15:15941212:15945130:-1 gene:VIT_15s0048g01740 transcript:VIT_15s0048g0174015970222
5'    TTCCACA-GCTTTCTTGAACT         3'
||||||| ||||||||||||
3' TCGAAGGTGTCCGAAAGAACTTGCGACCGCCG 5'
2034Vitis viniferaTAGCCAAGGATGACTTGCCTAalignmentplotGSM458931-2730VIT_15s0046g02460.t01 cdna:novel chromosome:IGGP_12x:15:19232996:19241683:-1 gene:VIT_15s0046g02460 transcript:VIT_15s0046g02460211900214
5'     TAGCCAAGGATGACTTGCCTA        3'
|| ||||||||o |||| |o|
3' CGTTAT-GGTTCCTATAGAACAGGTTAGGTTC 5'
2035Vitis viniferaTGAATCTTGATGATGCTACATalignmentplotGSM458931-2730VIT_13s0019g03550.t01 cdna:novel chromosome:IGGP_12x:13:4720263:4723858:1 gene:VIT_13s0019g03550 transcript:VIT_13s0019g03550.t0113150.04223.5
5'     TGAATCTTGATGATGCTACAT        3'
|||||o|||||||||| ||
3' CTTCCCTTAGGACTACTACGACGTCATCTGTT 5'
2036Vitis viniferaTGAATCTTGATGATGCTACACalignmentplotGSM458931-2730VIT_06s0004g03590.t01 cdna:novel chromosome:IGGP_12x:6:4494335:4498190:-1 gene:VIT_06s0004g03590 transcript:VIT_06s0004g03590.t0114470.04223.5
5'     TGAATCTTGATGATGCTACAC        3'
|||||o|||||||||| ||
3' CTACTCTTAGGACTACTACGACGTCATCTCTT 5'
2037Vitis viniferaTCTTGCTCAAATGAGTGTTCCAalignmentplotGSM458931-2730VIT_14s0006g03100.t01 cdna:novel chromosome:IGGP_12x:14:21607164:21608162:1 gene:VIT_14s0006g03100 transcript:VIT_14s0006g03100.11390221.5
5'     TCTTGCTCAAATGAGTGTTCCA       3'
|||||||||| |||||o|||||
3' TTAAAGAACGAGTTCACTCATAAGGTACTAGA 5'
2038Vitis viniferaTGCCTGGCTCCCTGTATGCCAalignmentplotGSM458931-2730VIT_18s0001g04180.t01 cdna:novel chromosome:IGGP_12x:18:3749619:3757678:1 gene:VIT_18s0001g04180 transcript:VIT_18s0001g04180.t016860220.5
5'     TGCCTGGCTCCCTGTATGCCA        3'
||||||||||||||o||||||
3' TAGAACGGACCGAGGGACGTACGGTCGTCCTT 5'
2039Vitis viniferaGCCTGGCTCCCCTGTATGCCalignmentplotGSM458931-2730VIT_18s0001g04180.t01 cdna:novel chromosome:IGGP_12x:18:3749619:3757678:1 gene:VIT_18s0001g04180 transcript:VIT_18s0001g04180.t016860221.5
5'     GCCTGGCTCCCCTGTATGCC         3'
|||||||| |||||o|||||
3' AGAACGGACCGA-GGGACGTACGGTCGTCCTT 5'
2040Vitis viniferaTCGGACCAGGCTTCATTCCalignmentplotGSM458931-2730VIT_10s0003g04670.t01 cdna:novel chromosome:IGGP_12x:10:8333667:8341190:1 gene:VIT_10s0003g04670 transcript:VIT_10s0003g04670.t015930221
5'     TCGGACCAGGCTTCATTCC          3'
o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAGAC 5'
2041Vitis viniferaTCGGACCAGGCTTCATTCCCCalignmentplotGSM458931-2730VIT_10s0003g04670.t01 cdna:novel chromosome:IGGP_12x:10:8333667:8341190:1 gene:VIT_10s0003g04670 transcript:VIT_10s0003g04670.t015930222.5
5'     TCGGACCAGGCTTCATTCCCC        3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5'
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