miRNEST 2.0, an integrative microRNA resource

#	species	miRNA	short reads alignment	plot	library	transcript	category	cleavage position	P-value	fragment abundance	weighted fragment abundance	alignment score	miRNA-target alignment
1	Arabidopsis thaliana	TTGAGTTGTATGTGAATACG	alignment	plot	GSM278334-4059	AT1G67880.1 cdna:known chromosome:TAIR10:1:25453921:25455735:-1 gene:AT1G67880 transcript:AT1G67880.1	2	1582	0.02	2	1	3	5' TTGAGTTGTATGTGAATACG 3' \|\|o\|o\|\|\|\|\|\|o\|\| \|o\|\|\| 3' ATTTAATTTAACATATACATGTGCTTTCACTG 5'
2	Arabidopsis thaliana	TGACAGAAGAAAGAGAGCAC	alignment	plot	GSM278334-4059	AT1G27360.3 cdna:known chromosome:TAIR10:1:9501777:9503869:1 gene:AT1G27360 transcript:AT1G27360.3	0	1250	0	8	2	1	5' TGACAGAAGAAAGAGAGCAC 3' \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| 3' TCCAACTGTCTTCTCTCTCTCGTGCCACCTAT 5'
3	Arabidopsis thaliana	TTCCACAGCTTTCTTGAACTT	alignment	plot	GSM278334-4059	AT5G61440.1 cdna:known chromosome:TAIR10:5:24707500:24708893:1 gene:AT5G61440 transcript:AT5G61440.1	0	719	0	5	5	2.5	5' TTCCACAGCTTTCTTGAACTT 3' \|o\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' GAATAGGTTG-CGAAAGAACTTGAATAACTAT 5'
4	Arabidopsis thaliana	TTCGCTTGCAGAGAGAAATCAC	alignment	plot	GSM278334-4059	AT2G27400.1 cdna:known chromosome:TAIR10:2:11721539:11722468:-1 gene:AT2G27400 transcript:AT2G27400.1	0	379	0	4	4	1.5	5' TTCGCTTGCAGAGAGAAATCAC 3' \|\|\|\|\|\|\|\| \|\|\|\|\|o\|\|\|\|\|\|\| 3' GAGTAAGCGAACATCTCTTTTTAGTGTTGTTT 5'
5	Arabidopsis thaliana	TTGACAGAAGATAGAGAGCAC	alignment	plot	GSM278334-4059	AT1G27360.3 cdna:known chromosome:TAIR10:1:9501777:9503869:1 gene:AT1G27360 transcript:AT1G27360.3	2	1251	0	3	0.75	1	5' TTGACAGAAGATAGAGAGCAC 3' \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| 3' CTCCAACTGTCTTCTCTCTCTCGTGCCACCTA 5'
6	Arabidopsis thaliana	TTTTCTTCTACTTCTTGCACA	alignment	plot	GSM278334-4059	AT1G30890.2 cdna:known chromosome:TAIR10:1:10994440:10996134:1 gene:AT1G30890 transcript:AT1G30890.2	1	956	0.03	3	1.5	4	5' TTTTCTTCTACTTCTTGCACA 3' \|\|\|\|\|\|\|\| \|\| \|\| \|\|\|\| \| 3' TTGAAAAAGAAG-TGCAGTACGTTTACTTATC 5'
7	Arabidopsis thaliana	TCTATCTTCTTCGTCTTCGAT	alignment	plot	GSM278334-4059	AT1G76780.1 cdna:known chromosome:TAIR10:1:28816641:28822256:1 gene:AT1G76780 transcript:AT1G76780.1	2	189	0.04	4	0.00569801	3	5' TCTATCTTCTTCGTCTTCGAT 3' \|\|\| \|\|\|\|\|\|\|\| \|\|o\|\|o\|\| 3' AAGAAGA-AGAAGAAGAAGGAGTTAGAATTTA 5'
8	Arabidopsis thaliana	CATCGTCTTCTTCCTCGATC	alignment	plot	GSM278334-4059	AT1G21460.1 cdna:known chromosome:TAIR10:1:7511850:7513361:-1 gene:AT1G21460 transcript:AT1G21460.1	2	975	0.02	2	2	2.5	5' CATCGTC-TTCTTCCTCGATC 3' \|\|\|\|\|\|\| \|\|\|\|\|\| \|\|o\|\|\| 3' TCCGTAGCAGTAAGAAGTAGTTAGTGATCACA 5'
9	Arabidopsis thaliana	AATTGGGTTTATGCTAGAGTT	alignment	plot	GSM278334-4059	AT1G56280.2 cdna:novel chromosome:TAIR10:1:21072855:21074877:-1 gene:AT1G56280 transcript:AT1G56280.2	2	1015	0.01	21	10.5	3.5	5' AATTGGGTTTATGCTAGAGTT 3' \|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\| o 3' GTGGTTATCCCAAATACGATGTCTGTTCTCCT 5'
10	Arabidopsis thaliana	TTGAACATGGTTTATTAGGAA	alignment	plot	GSM278334-4059	AT3G02470.3 cdna:known chromosome:TAIR10:3:509096:511489:1 gene:AT3G02470 transcript:AT3G02470.3	2	1655	0.04	2	0.5	3	5' TTGAACATGGTTTATTAGGAA 3' \|o\|\|\| \|\|o\|\|\| \|\|\|\|\|\|\|\| 3' TTCGAGCTTTTATCAA-TAATCCTTCTTTTTA 5'
11	Arabidopsis thaliana	GTCATGGGGTATGATCGAATG	alignment	plot	GSM278334-4059	AT5G52060.1 cdna:known chromosome:TAIR10:5:21152214:21154244:-1 gene:AT5G52060 transcript:AT5G52060.1	1	1453	0	3	3	2	5' GTCATGGGGT-ATGATCGAATG 3' \|\|\|\|o\|\|\|o\| \|\|\|\|\|\|\|\|\|\|\| 3' ACCGCAGTGCCCTACTACTAGCTTACAAAGGG 5'
12	Arabidopsis thaliana	AAAACCCGGAATTTTCCCGC	alignment	plot	GSM278334-4059	AT2G27710.4 cdna:known chromosome:TAIR10:2:11816634:11817867:1 gene:AT2G27710 transcript:AT2G27710.4	2	528	0.02	2	0.5	4	5' AAAACCCGGAATTTTCCCGC 3' \|\|\|\| \|\|\|\|\| \|\|\|\|\| \|\| 3' GTTGTTTT-GGCCTGAAAAGTACGATGATGGT 5'
13	Arabidopsis thaliana	TCCGGAGGGATTCCTTCCTT	alignment	plot	GSM278334-4059	AT4G05320.5 cdna:known chromosome:TAIR10:4:2718170:2720133:1 gene:AT4G05320 transcript:AT4G05320.5	2	648	0.01	5	0.833333	0	5' TCCGGAGGGATTCCTTCCTT 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' GACCAGGCCTCCCTAAGGAAGGAATAGGACCT 5'
14	Arabidopsis thaliana	AACTCGAACCCGAACCTGAA	alignment	plot	GSM278334-4059	AT5G64260.1 cdna:known chromosome:TAIR10:5:25703929:25705316:1 gene:AT5G64260 transcript:AT5G64260.1	2	1091	0	2	2	2.5	5' AACTCGA-ACCCGAACCTGAA 3' \|\|\|o\|\|\| \|\|\|\|o\|\|\|\|o\|\|\| 3' GGTTTGGGCTCTGGGTTTGGGCTTTCTAAAAA 5'
15	Arabidopsis thaliana	GAACCCAAGACCTCACCCTT	alignment	plot	GSM278334-4059	AT5G22650.1 cdna:known chromosome:TAIR10:5:7534017:7536273:1 gene:AT5G22650 transcript:AT5G22650.1	2	1045	0.02	3	1.5	3	5' GAACCCAAGACCTCACCCTT 3' o\|\|\|\|\|\|\|o\|\|\|\|\| \|\| \|\| 3' AGCTTTTGGGTTTTGGAGAGG-AACTAGGTGC 5'
16	Arabidopsis thaliana	TTCCACAGCTTTCTTGAACTT	alignment	plot	GSM278334-4059	AT5G27850.1 cdna:known chromosome:TAIR10:5:9873152:9874598:1 gene:AT5G27850 transcript:AT5G27850.1	2	542	0.02	5	5	3	5' TTCCAC-AGCTTTCTTGAACTT 3' \|\|\|\| \| \|\|\|\|\|\|\|\|oo\|\|\|\|\| 3' CGAAAGGAGATCGAAAGAGTTTGAAGGAAGGG 5'
17	Arabidopsis thaliana	TGTCTTCATCGTCATCACAA	alignment	plot	GSM278334-4059	AT5G37430.1 cdna:known chromosome:TAIR10:5:14842430:14844308:1 gene:AT5G37430 transcript:AT5G37430.1	1	1756	0.04	12	0.8	4	5' TGTCTTCATCGTCATCACAA 3' oo\|\| \|\|\|o\|o\|\|\|\|\|\|\| \| 3' AGTAGTAGTAGTGGTAGTAGTGGTAGTAGTAG 5'
18	Arabidopsis thaliana	TGTCTTCATCGTCATCACAA	alignment	plot	GSM278334-4059	AT5G37430.1 cdna:known chromosome:TAIR10:5:14842430:14844308:1 gene:AT5G37430 transcript:AT5G37430.1	1	1789	0.04	12	0.8	4	5' TGTCTTCATCGTCATCACAA 3' oo\|\| \|\|\|o\|o\|\|\|\|\|\|\| \| 3' AGTAGTAGTAGTGGTAGTAGTGGTAGTAGTAG 5'
19	Arabidopsis thaliana	TCCAAAGGGATCGCATTGATCC	alignment	plot	GSM278334-4059	AT3G26810.1 cdna:known chromosome:TAIR10:3:9867845:9870640:1 gene:AT3G26810 transcript:AT3G26810.1	0	2010	0	6	6	2	5' TCCAAAGGGATCGCATTGATCC 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \| 3' CTGTAGGTTTCCCTAGCGTAACAAAGTATGAA 5'
20	Arabidopsis thaliana	CCTTTGGCACCTTTTTTGGCG	alignment	plot	GSM278334-4059	AT1G72260.1 cdna:known chromosome:TAIR10:1:27198433:27199444:-1 gene:AT1G72260 transcript:AT1G72260.1	2	421	0.03	7	7	4	5' CCTTTGGCACCTT-TTTTGGCG 3' \|\|o\|\|\|\|\|\|\| \|\| \|\|oo\|o\|\| 3' TGTAGGGAACCGTGTAACAAGGCTGCGAGGTA 5'
21	Arabidopsis thaliana	AGAGAATGAGGTTGAGCCAA	alignment	plot	GSM278334-4059	AT4G13590.2 cdna:novel chromosome:TAIR10:4:7901251:7904025:-1 gene:AT4G13590 transcript:AT4G13590.2	0	1292	0.02	4	2	4	5' AGAGAATGAGGTTG-AGCCAA 3' \|o\|\|\|\|\|\| \|\|o\|\| \|\|\| \|\| 3' GAGGTTTCTTACACCGACGTCGTTTTTGATTC 5'
22	Arabidopsis thaliana	GAGGAGGAGGAGCACCACCGT	alignment	plot	GSM278334-4059	AT1G13930.1 cdna:known chromosome:TAIR10:1:4761042:4761725:1 gene:AT1G13930 transcript:AT1G13930.1	2	392	0	4	1.33333	3	5' GAGGAGGAGGAGCACCACCGT 3' \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|oo 3' CAGCCTCCTCCTCCTGGTGGTCGTGGCCACCT 5'
23	Arabidopsis thaliana	TCCGAATCAGAATCGGAGTC	alignment	plot	GSM278334-4059	AT3G24040.1 cdna:known chromosome:TAIR10:3:8680877:8683289:-1 gene:AT3G24040 transcript:AT3G24040.1	1	1250	0.02	2	2	3.5	5' TCCGAATCAGAATCGGAGTC 3' \|\| \|\|\|o\|\|\|\|\|o\|\|\| \|o\| 3' GGATAGCCTTGGTCTTGGCC-CGGCTTCCTAT 5'
24	Arabidopsis thaliana	TCATCTTCATCATCATCATCT	alignment	plot	GSM278334-4059	AT1G03530.1 cdna:known chromosome:TAIR10:1:880496:883391:-1 gene:AT1G03530 transcript:AT1G03530.1	2	1024	0.05	10	0.47619	1.5	5' TCATCTTCATCATCATCATCT 3' \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|o 3' TAGTAGTAGTAGTAGTAGTAGTAGGAGTAGGA 5'
25	Arabidopsis thaliana	TCTTCTTCGTCGCCATTACT	alignment	plot	GSM278334-4059	AT4G38590.1 cdna:known chromosome:TAIR10:4:18036092:18040928:1 gene:AT4G38590 transcript:AT4G38590.1	0	2604	0.01	3	0.145833	4	5' TCTTCTTCGTCGCCATTACT 3' \|\|\|\|\|\|\|\| \|\|o \|\|\|o\| \| 3' AAGAAGAAGAAGAAGTAGTAGT-AGAAGTAGC 5'
26	Arabidopsis thaliana	TCATCTTCATCATCATCATCT	alignment	plot	GSM278334-4059	AT4G38590.1 cdna:known chromosome:TAIR10:4:18036092:18040928:1 gene:AT4G38590 transcript:AT4G38590.1	0	2604	0.03	3	0.145833	2	5' TCATCTTCATCATCATCATCT 3' \|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| 3' AAGAAGAAGAAGAAGTAGTAGTAGAAGTAGCA 5'
27	Arabidopsis thaliana	CGGATCCGGATACGGATCCGG	alignment	plot	GSM278334-4059	AT5G43850.1 cdna:known chromosome:TAIR10:5:17627182:17629159:-1 gene:AT5G43850 transcript:AT5G43850.1	2	390	0.01	2	2	3.5	5' CGGATCCGGATACGGATCCGG 3' \| \|\|\|\|o\|\|\|\|\|\|\|\|\|\|\|oo 3' TCCAACGTAGGTCTATGCCTAGGTTGCTAGTA 5'
28	Arabidopsis thaliana	CTCGACCTGAGGGTCGAGTGGT	alignment	plot	GSM278334-4059	AT4G34050.1 cdna:known chromosome:TAIR10:4:16310775:16312216:1 gene:AT4G34050 transcript:AT4G34050.1	2	786	0.01	2	1	4	5' CTCGACCTGAGGGTCGAGTGGT 3' \|\|\|\|\| \|o\|\|\|\|\|\|\| \|\|oo\|o 3' TCTAGAGCTAGGCTCCCAG-TCGTCGTTCTCG 5'
29	Arabidopsis thaliana	TGTCTTCATCGTCATCACAA	alignment	plot	GSM278334-4059	AT1G21722.1 cdna:known chromosome:TAIR10:1:7628456:7629252:1 gene:AT1G21722 transcript:AT1G21722.1	1	415	0.01	2	0.392857	3	5' TGTCTTCATCGTCATCACAA 3' oo\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \| 3' AGTTGTAGTAGTAGCAGTAGTGATAATAGTAG 5'
30	Arabidopsis thaliana	TCATCATCATCATCATCTTCT	alignment	plot	GSM278334-4059	AT1G26890.1 cdna:novel chromosome:TAIR10:1:9317589:9319246:1 gene:AT1G26890 transcript:AT1G26890.1	2	785	0.01	4	0.0113636	0.5	5' TCATCATCATCATCATCTTCT 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|o\|\|\| 3' TAGTAGTAGTAGTAGTAGTAGGAGATGGAGTA 5'
31	Arabidopsis thaliana	TCATTGAGTGCAGCGTTGATG	alignment	plot	GSM278334-4059	AT4G23130.2 cdna:known chromosome:TAIR10:4:12117598:12120134:-1 gene:AT4G23130 transcript:AT4G23130.2	0	1964	0	2	1	4	5' TCATTGAGTGCAGCGTTGATG 3' \| \|\|o\|\| \|\|\|\|\|\|o\|oo\|\|\| 3' TATCATTAGCT-ACGTCGTAGTTACCTTGTTT 5'
32	Arabidopsis thaliana	TTCGCTTGCAGAGAGAAATCAC	alignment	plot	GSM278334-4059	AT2G39681.1 cdna:known chromosome:TAIR10:2:16539384:16540417:-1 gene:AT2G39681 transcript:AT2G39681.1	0	418	0	13	13	1.5	5' TTCGCTTGCAGAGAGAAATCAC 3' \|\|\|\|\|\|\|\| \|\|\|\|\|o\|\|\|\|\|\|\| 3' TAGTAAGCGAACCTCTCTTTTTAGTGTTTTGG 5'
33	Arabidopsis thaliana	GTATAGCATAATGAGCAATCA	alignment	plot	GSM278334-4059	AT3G12120.1 cdna:known chromosome:TAIR10:3:3860285:3863050:-1 gene:AT3G12120 transcript:AT3G12120.1	2	1451	0.04	6	3	3	5' GTATAGCATAATGAGCAATCA 3' oo\|\|\|o\|\|\|\|\|\|\|\|\|\|\| o\|\| 3' AGGGTGTATTGTATTACTCGTCGGTTTTACAG 5'
34	Arabidopsis thaliana	AACAGAGGAAAAACAGAAACA	alignment	plot	GSM278334-4059	AT1G80120.1 cdna:known chromosome:TAIR10:1:30139101:30140204:1 gene:AT1G80120 transcript:AT1G80120.1	0	762	0.05	2	2	3	5' AACAGAGGAAAAACAGAAACA 3' \|\| \|\|\|o\|\|\|\|\| \|\|o\|\|\|\|\| 3' GGTTTTTTCTTCTTTT-GTTTTTGTTTTTTTC 5'
35	Arabidopsis thaliana	TTGAGAGCAACAAGACATAAT	alignment	plot	GSM278334-4059	AT4G13495.2 cdna:known chromosome:TAIR10:4:7842967:7846774:1 gene:AT4G13495 transcript:AT4G13495.2	2	756	0	2	1	2	5' TTGAGAGCAACAAGACATAAT 3' \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| 3' CGATAACTCTAGTTGTTCTGTATTCTTTCTCA 5'
36	Arabidopsis thaliana	TTAGATTCACGCACAAACTCG	alignment	plot	GSM278334-4059	AT1G31280.1 cdna:known chromosome:TAIR10:1:11181711:11185344:1 gene:AT1G31280 transcript:AT1G31280.1	0	3233	0	49	49	1	5' TTAGATTCACGCACAAACTCG 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' GGTTAATCTAAGTGCGTGTTTGAGGAAAGATG 5'
37	Arabidopsis thaliana	TCCAAAGGGATCGCATTGATCC	alignment	plot	GSM278334-4059	AT1G12820.1 cdna:known chromosome:TAIR10:1:4368760:4371293:-1 gene:AT1G12820 transcript:AT1G12820.1	0	1895	0	8	8	2	5' TCCAAAGGGATCGCATTGATCC 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \| 3' CTGTAGGTTTCCCTAGCGTAACAAAGCATGGA 5'
38	Arabidopsis thaliana	GCTGGAGGAACTGCAGCTATG	alignment	plot	GSM278334-4059	AT5G48485.1 cdna:known chromosome:TAIR10:5:19646232:19646802:-1 gene:AT5G48485 transcript:AT5G48485.1	2	411	0.01	5	5	4	5' GCTGGAGGAACTGCAGCTATG 3' o\|o\|o\|o\|\|\|\|o\| \|\|\|o\|\|\| 3' GTTGTGGCTTTCTTGGC-TCGGTACCTCTCAA 5'
39	Arabidopsis thaliana	AAACGACGTCGTTGGTGATT	alignment	plot	GSM278334-4059	AT5G40350.1 cdna:known chromosome:TAIR10:5:16138544:16141134:-1 gene:AT5G40350 transcript:AT5G40350.1	2	671	0.03	2	2	3	5' AAACGACGTCGTTGGTGATT 3' \| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \| 3' CAACTATGCTGCAGCAACCTCTTATGTATAGG 5'
40	Arabidopsis thaliana	ACCATCAATTCATCGTGGCCG	alignment	plot	GSM278334-4059	AT3G18760.2 cdna:known chromosome:TAIR10:3:6457690:6459627:-1 gene:AT3G18760 transcript:AT3G18760.2	2	560	0.04	2	1	4	5' ACCATCAATTCATCGTGGCCG 3' \|\|\|\|o\|\| \|\|\|\|\| \|\|oo\|\|o 3' CGTATGGTGGTGAAGTA-CATTGGTTTTTGTA 5'
41	Arabidopsis thaliana	CTATCATCATCATCCTCGTAA	alignment	plot	GSM278334-4059	AT2G11910.2 cdna:known chromosome:TAIR10:2:4805684:4807319:-1 gene:AT2G11910 transcript:AT2G11910.2	2	509	0.04	3	1.5	3.5	5' CTATCATCATCATCCTCGTAA 3' \| \|\|\|\|\|\|\|\|\| \|\|\|\|\|o\| \| 3' TGTAG-TAGTAGTAGAAGGAGTAGTAGCAGAA 5'
42	Arabidopsis thaliana	CATCGTCTTCTTCCTCGATC	alignment	plot	GSM278334-4059	AT2G11910.2 cdna:known chromosome:TAIR10:2:4805684:4807319:-1 gene:AT2G11910 transcript:AT2G11910.2	2	508	0.02	2	1	2.5	5' CATCGTCTTCTTCCTCGATC 3' \|\|\|\|o\|\| \|\|\|\|\|\|\|\| \|\|\| 3' TGTAGTAGTAGTAGAAGGAG-TAGTAGCAGAA 5'
43	Arabidopsis thaliana	TTCGAGGCCTATTAAACCTCTG	alignment	plot	GSM278334-4059	AT5G54770.1 cdna:known chromosome:TAIR10:5:22246592:22248332:1 gene:AT5G54770 transcript:AT5G54770.1	2	1179	0.03	26	26	4	5' TTCGAGGCCTATTAAACCTCTG 3' \|\|\|o\|\|o\| \|\|\|\|\|\|\|\| o\|\|o 3' TTTCAAGTTCTGTATAATTTGTGGATTTGAGG 5'
44	Arabidopsis thaliana	TGACAGAAAGAGAGGTGAGCA	alignment	plot	GSM278334-4059	AT1G32230.3 cdna:known chromosome:TAIR10:1:11612118:11616218:1 gene:AT1G32230 transcript:AT1G32230.3	0	2498	0.04	13	4.33333	4	5' TGACAGAAAGAGAGGTGAGCA 3' o\|\|\|\|\|\|\|\|\|\|o\|o\|\| o\|\| 3' AAGTGCTGTCTTTCTTTTCAGCTGTGTAAAAT 5'
45	Arabidopsis thaliana	TCGACCTCGTGGTCGAGTGG	alignment	plot	GSM278334-4059	AT5G61580.2 cdna:known chromosome:TAIR10:5:24761091:24764014:1 gene:AT5G61580 transcript:AT5G61580.2	1	1816	0	2	2	4	5' TCGACCTCGTGGTCGAG-TGG 3' \|\|o\|\|\|\|\|o\| \|\| \|\|\| \|\|\| 3' GTAGAGTTGGAGTAGCAACTCTACCTACAACT 5'
46	Arabidopsis thaliana	AAACGAACAAAAAACTGATGG	alignment	plot	GSM278334-4059	AT1G13860.1 cdna:known chromosome:TAIR10:1:4743309:4746956:-1 gene:AT1G13860 transcript:AT1G13860.1	0	2760	0.04	6	1.5	4	5' AAACGAACAAAAAACTGATGG 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|o\| o 3' ATGCTTTGCTTGTTTTTT-ATTTTGACTCTTG 5'
47	Arabidopsis thaliana	TGACCTGCCAAAGGAGAGTTG	alignment	plot	GSM278334-4059	AT1G02330.1 cdna:known chromosome:TAIR10:1:462075:463612:-1 gene:AT1G02330 transcript:AT1G02330.1	2	984	0.03	2	2	4	5' TGACCTGCCAAAGGAGAGTTG 3' \|o\|\| \| \|\|\|\|\|o\|\|\| \|\|\|\| 3' TTAGATTGTA-GGTTTTCTCACAACAATGGGC 5'
48	Arabidopsis thaliana	TTGTACAAATTTAAGTGTACG	alignment	plot	GSM278334-4059	AT1G16890.1 cdna:known chromosome:TAIR10:1:5776346:5778263:-1 gene:AT1G16890 transcript:AT1G16890.1	2	725	0.04	2	0.666667	3.5	5' TTGTACAAATTTA-AGTGTACG 3' \|\|o\|\|\|\|\|\|\|\|o\| \|\| \|\|\|\|o 3' GATCAATATGTTTAAGTCTCTCATGTTTAGAA 5'
49	Arabidopsis thaliana	AGAATCCTGATGATGCTGC	alignment	plot	GSM278334-4059	AT1G53400.1 cdna:known chromosome:TAIR10:1:19924752:19926631:1 gene:AT1G53400 transcript:AT1G53400.1	1	677	0.04	2	2	3.5	5' AGAATCCTGATGATGCTGC 3' \|\|\|\|\|\|\|\|o\|\|\| o\|\|o\| 3' CGTCTCTTAGGATTACATTGATGAATGTGTGT 5'
50	Arabidopsis thaliana	TGAGAAGAAGAAGAAGAAAA	alignment	plot	GSM278334-4059	AT5G55910.1 cdna:known chromosome:TAIR10:5:22639844:22642354:-1 gene:AT5G55910 transcript:AT5G55910.1	0	1943	0.02	3	3	2.5	5' TGAGAAGAAGAAGAAGAAAA 3' \|o\|o\|\|\|\|\|\|\|\|o\|\| \|\|\|\| 3' TTTAATTTTTCTTCTTTTT-TTTTCTTTGTGT 5'
51	Arabidopsis thaliana	TGAGAAGAAGAAGAAGAAAA	alignment	plot	GSM278334-4059	AT2G40520.1 cdna:known chromosome:TAIR10:2:16923068:16925914:1 gene:AT2G40520 transcript:AT2G40520.1	2	1787	0.04	6	0.0093439	1.5	5' TGAGAAGAAGAAGAAGAAAA 3' o\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' TCTTCTTCTTCTTCTTCTTCTTTTTCTTTTTG 5'
52	Arabidopsis thaliana	TTTGCGATGAGTTTGCGAGGAT	alignment	plot	GSM278334-4059	AT2G40660.1 cdna:known chromosome:TAIR10:2:16965933:16969035:1 gene:AT2G40660 transcript:AT2G40660.1	1	1307	0	3	3	4	5' TTTGCGA-TGAGTTTGCGAGGAT 3' \|\|\| \|o\| \|\|\|\|\|\|\|\|\|\|\|o \|\| 3' GAAAAAGGTTGACTCAAACGCTTATAGTTTCT 5'
53	Arabidopsis thaliana	TTGACAGAAGATAGAGAGCAC	alignment	plot	GSM278334-4059	AT5G43270.2 cdna:known chromosome:TAIR10:5:17360305:17363773:-1 gene:AT5G43270 transcript:AT5G43270.2	2	1160	0	2	0.666667	1	5' TTGACAGAAGATAGAGAGCAC 3' \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| 3' CTTAAACTGTCTTCTCTCTCTCGTGGTAGTTC 5'
54	Arabidopsis thaliana	GTTCCGGCGAGTCTGTTCCC	alignment	plot	GSM278334-4059	AT3G26520.1 cdna:known chromosome:TAIR10:3:9722443:9723815:-1 gene:AT3G26520 transcript:AT3G26520.1	2	801	0	5	5	3.5	5' GTTCCGGCGAGTCTGTTCCC 3' o\|\|\|\|\|\|\|\|\|\|\|\|oooo \|\| 3' CTATTAAGGCCGCTCAGGTGGTGGTTATTCTC 5'
55	Arabidopsis thaliana	TATGAGAGTATTATAAGTCAC	alignment	plot	GSM278334-4059	AT2G33120.2 cdna:known chromosome:TAIR10:2:14043459:14045543:-1 gene:AT2G33120 transcript:AT2G33120.2	2	1018	0.02	2	0.666667	3	5' TATGAGAGTATTATAAGTCAC 3' \|\|\|\|\|\|\|o\|\|\| \| \|\|o\|\|\|\| 3' TATCATACTCTTATA-TCTTTAGTGTTTTTGT 5'
56	Arabidopsis thaliana	ACCGGTATCTGGTCCGGTTTC	alignment	plot	GSM278334-4059	AT3G02560.2 cdna:known chromosome:TAIR10:3:541800:543385:1 gene:AT3G02560 transcript:AT3G02560.2	2	542	0.01	4	2	4	5' ACCGGTATCTGGTCCGGTTTC 3' \| \|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\| 3' GTTCT-GCCATAGACCAAGAGAAAGGATGTTA 5'
57	Arabidopsis thaliana	TCCTCCACCACCGAGAGCATT	alignment	plot	GSM278334-4059	AT2G32690.1 cdna:known chromosome:TAIR10:2:13863717:13864596:-1 gene:AT2G32690 transcript:AT2G32690.1	2	615	0.03	7	1.75	3.5	5' TCCTCCACCACCGAGAGCATT 3' \|\|\|\|\|\|\|\|\|\|\|\| \|o \|\| \|\| 3' CTGGAGGAGGTGGTGG-TTACGGAAATGGTTT 5'
58	Arabidopsis thaliana	TGATTGAGCCGTGTCAATATC	alignment	plot	GSM278334-4059	AT2G45160.1 cdna:known chromosome:TAIR10:2:18617862:18620150:-1 gene:AT2G45160 transcript:AT2G45160.1	1	1014	0	3	3	1	5' TGATTGAGCCGTGTCAATATC 3' \|\|\|\|\|\|\|\|\|\|\|o\|o\|\|\|\|\|\|\| 3' TACCACTAACTCGGCGCGGTTATAGGGAACGC 5'
59	Arabidopsis thaliana	AACCGGATTCTGGTTTGGTTA	alignment	plot	GSM278334-4059	AT5G01530.1 cdna:known chromosome:TAIR10:5:208937:210445:1 gene:AT5G01530 transcript:AT5G01530.1	2	444	0	2	2	3.5	5' AACCGGATTCTGGTTTGGTTA 3' \| \|\|o\|\|\|\|\|\|\|\|\|o\|o\|\| \| 3' AGAATCGGTCTAAGACCAGATCACTTAGCTAT 5'
60	Arabidopsis thaliana	TCCTGAGTTTCATTGGCTCT	alignment	plot	GSM278334-4059	AT3G59540.1 cdna:known chromosome:TAIR10:3:21995677:21996836:-1 gene:AT3G59540 transcript:AT3G59540.1	2	315	0.05	15	15	3.5	5' TCCTGAGTTTCATTGGCTCT 3' \|\|\|\|\|\| \|\|\|\|\|\| o\| \|\|\| 3' ATCTAGGACT-AAAGTATTCTAGAAGTTTCCA 5'
61	Arabidopsis thaliana	AACGGCGTGAGTGCCGTAGA	alignment	plot	GSM278334-4059	AT1G76080.1 cdna:known chromosome:TAIR10:1:28547786:28549419:-1 gene:AT1G76080 transcript:AT1G76080.1	2	957	0.01	3	3	3.5	5' AACGGCGTGAGTGCCGTAGA 3' \|\|\| \|\| \|\|\|\|\|o\|\|\| \|\|\| 3' GTGCTTG-CGGACTCATGGCTTCTTAGAGAGG 5'
62	Arabidopsis thaliana	TCATCATCATCATCATCTTCT	alignment	plot	GSM278334-4059	AT1G13220.2 cdna:known chromosome:TAIR10:1:4515699:4520284:1 gene:AT1G13220 transcript:AT1G13220.2	1	3302	0.05	2	2	2	5' TCATCATCATCATCATCTTCT 3' \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\| 3' GGGTAGTAGTAGTAGCAGTAGTAGAACTAAAA 5'
63	Arabidopsis thaliana	TCTTCTTCGTCGCCATTACT	alignment	plot	GSM278334-4059	AT4G27310.1 cdna:known chromosome:TAIR10:4:13675638:13676910:1 gene:AT4G27310 transcript:AT4G27310.1	1	586	0.02	2	2	4	5' TCTTCTTCGTCGCCATTACT 3' \|\|\|\|\|\|\|\| \|\|o \|\|\|o\| \| 3' GAGTAGAAGAAGGAGTAGTAGT-AGCATTCTG 5'
64	Arabidopsis thaliana	TGAGAAGAAGAAGAAGAAAA	alignment	plot	GSM278334-4059	AT1G31335.1 cdna:known chromosome:TAIR10:1:11216914:11217393:-1 gene:AT1G31335 transcript:AT1G31335.1	0	110	0.04	2	2	2.5	5' TGAGAAGAAGA-AGAAGAAAA 3' o\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\| 3' TTAGGCTCTTCATCTGTCTTCTTTTAATCTCC 5'
65	Arabidopsis thaliana	TCTATCTTCTTCGTCTTCGAT	alignment	plot	GSM278334-4059	AT1G77122.1 cdna:known chromosome:TAIR10:1:28977357:28978743:-1 gene:AT1G77122 transcript:AT1G77122.1	2	321	0.01	4	0.00569801	2.5	5' TCTATCTTCTTCGTCTTCGAT 3' \|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|o\|\| 3' AAGAAGA-AGAAGAAGAAGAAGTTACTAGTTG 5'
66	Arabidopsis thaliana	CCAGCTTTCCATTGCACTAA	alignment	plot	GSM278334-4059	AT4G25740.2 cdna:known chromosome:TAIR10:4:13107264:13108827:-1 gene:AT4G25740 transcript:AT4G25740.2	2	596	0.05	2	1	3.5	5' CCAGCTTTCCATTGCACTAA 3' \|\|\|\| \|\|\| \|\|\|\|o\|\|\| \|\| 3' CTAAGGTCTAAACGTAATGTGTTTGTCTTGAT 5'
67	Arabidopsis thaliana	TCATCATCATCATCATCTTCT	alignment	plot	GSM278334-4059	AT5G08600.1 cdna:known chromosome:TAIR10:5:2786267:2789871:1 gene:AT5G08600 transcript:AT5G08600.1	2	330	0.01	4	0.0113636	0	5' TCATCATCATCATCATCTTCT 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' TAGTAGTAGTAGTAGTAGTAGAAGACTGAGGT 5'
68	Arabidopsis thaliana	TGTACATCACTTTTAGTGTA	alignment	plot	GSM278334-4059	AT2G32990.1 cdna:known chromosome:TAIR10:2:14003250:14006017:1 gene:AT2G32990 transcript:AT2G32990.1	1	1816	0.05	2	2	4	5' TGTACATCACTTTTAGTGTA 3' \|o\|\|\|\| \|\|\|\|\|\|\| o\| \|\| 3' TAAAATATGT-GTGAAAAATAAATTTTTGTTT 5'
69	Arabidopsis thaliana	AGAAGAAGAGGCGTCCTCCT	alignment	plot	GSM278334-4059	AT4G24100.1 cdna:known chromosome:TAIR10:4:12515076:12519841:1 gene:AT4G24100 transcript:AT4G24100.1	0	2677	0	2	2	3.5	5' AGAAGAAGAGGCGTCCTCCT 3' \|o\|\|\|\|\|\|\|\| \| \| \|\|\|\|\| 3' TGGGTTTTCTTCTC-GAAAGAGGAAATAGAGT 5'
70	Arabidopsis thaliana	AGCCATCATCATGTTCCTGT	alignment	plot	GSM278334-4059	AT2G38690.1 cdna:known chromosome:TAIR10:2:16176631:16177754:-1 gene:AT2G38690 transcript:AT2G38690.1	1	445	0.02	3	3	4	5' AGCCATCATCAT-GTTCCTGT 3' \|o\|\|\|\|\| \|\|\|\| \|\|o \|\|\|\| 3' ACAATTGGTAGAAGTAGCAGAGACATAGTCAT 5'
71	Arabidopsis thaliana	CACCATCTTCGTTGCTCTCT	alignment	plot	GSM278334-4059	AT2G38690.1 cdna:known chromosome:TAIR10:2:16176631:16177754:-1 gene:AT2G38690 transcript:AT2G38690.1	1	445	0	3	3	3	5' CACCATCTTCGTTGCTCTCT 3' \|\|\|\|\|\|\|\|\|o\|o\| \|\|\|\|\| 3' ACAATTGGTAGAAGTAGC-AGAGACATAGTCA 5'
72	Arabidopsis thaliana	CTATCATCATCATCCTCGTAA	alignment	plot	GSM278334-4059	AT2G30350.2 cdna:known chromosome:TAIR10:2:12934150:12935773:-1 gene:AT2G30350 transcript:AT2G30350.2	2	627	0.02	4	0.0113636	3	5' CTATCATCATCATCCTCGTAA 3' \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \| 3' AGTAG-TAGTAGTAGTAGGAGAAGTAATTGGA 5'
73	Arabidopsis thaliana	TAGTCCGGTTTTGGATACGTG	alignment	plot	GSM278334-4059	AT1G42970.1 cdna:known chromosome:TAIR10:1:16127381:16129843:1 gene:AT1G42970 transcript:AT1G42970.1	2	1585	0.04	10	10	4	5' TAGTCCGGTTTTGGATACGTG 3' \|\|\|\| \|\|o\|\|\|o\|o\|\|\| \|\|o 3' ACGTATCATGCTAAAGCTTATTCATTGAGTAC 5'
74	Arabidopsis thaliana	ATTTGCGAGGGAATTGCAAGA	alignment	plot	GSM278334-4059	AT3G63340.2 cdna:known chromosome:TAIR10:3:23391628:23398377:-1 gene:AT3G63340 transcript:AT3G63340.2	2	3749	0.04	4	2	4	5' ATTTGCGAGGGAATTGCAAGA 3' \|\|\|\|o\|o\|\|\|o\|\| o\|\|\|\|\| 3' GAAATAAATGTTCCTTTTCTGTTCTCCGATAA 5'
75	Arabidopsis thaliana	ACCCAATCTCTACTTCAGTCT	alignment	plot	GSM278334-4059	AT2G11890.1 cdna:known chromosome:TAIR10:2:4802793:4804358:1 gene:AT2G11890 transcript:AT2G11890.1	2	486	0.05	2	1	3.5	5' ACCCAATCTCTACTTCAGTCT 3' \|\| \|\|\|\|\|\|\|o \|\|\|\|\| \|\|\| 3' GTTATGAGTTAGAGGAGAAGT-AGAAGGAGGT 5'
76	Arabidopsis thaliana	CTATCATCATCATCCTCGTAA	alignment	plot	GSM278334-4059	AT1G49900.1 cdna:known chromosome:TAIR10:1:18473908:18477643:-1 gene:AT1G49900 transcript:AT1G49900.1	2	1931	0	4	0.0113636	2.5	5' CTATCATCATCATCCTCGTAA 3' \| \|\|\|\|\|\|\|\|\|\|\|\| \|\|o\|\|\| 3' AGTAG-TAGTAGTAGTAGTAGTATTATTCTTG 5'
77	Arabidopsis thaliana	AAGCTCAGGAGGGATAGCGCC	alignment	plot	GSM278334-4059	AT5G57735.1 cdna:known chromosome:TAIR10:5:23394005:23394500:1 gene:AT5G57735 transcript:AT5G57735.1	0	429	0	3	3	3	5' AAGCTCAGGAGGGATAGCGCC 3' \|\|\|\|\|\|\|\|\|\|\|\|o\|\|\|\| o \| 3' GTATTTCGAGTCCTCCTTATCTTTGTTGTTTG 5'
78	Arabidopsis thaliana	CTATCATCATCATCCTCGTAA	alignment	plot	GSM278334-4059	AT1G49900.1 cdna:known chromosome:TAIR10:1:18473908:18477643:-1 gene:AT1G49900 transcript:AT1G49900.1	2	1964	0.03	4	0.0113636	2.5	5' CTATCATCATCATCCTCGTAA 3' \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|o\| \| 3' AGTAG-TAGTAGTAGTAGGAGTAGTGGTAGTA 5'
79	Arabidopsis thaliana	TTTGGATTGAAGGGAGCTCTT	alignment	plot	GSM278334-4059	AT2G21600.1 cdna:known chromosome:TAIR10:2:9242801:9244833:1 gene:AT2G21600 transcript:AT2G21600.1	1	914	0.03	5	5	4	5' TTTGGATTGAAGGGAGCTCTT 3' o\|\|\|\|\|\|\|o\|\|\|\|\|\|o\|\| o 3' CCATGAACCTAATTTCCCTTGATTGTTTCTTG 5'
80	Arabidopsis thaliana	CATCCAAGGTGTTTGTAGAAA	alignment	plot	GSM278334-4059	AT1G09750.1 cdna:known chromosome:TAIR10:1:3157501:3159148:1 gene:AT1G09750 transcript:AT1G09750.1	0	1494	0.02	8	8	4	5' CATCCAAGGTGTTTGTAGAAA 3' \|\|\| \|\|\|o\|\|o\| \|\|\|\|\|\|\| 3' GCAAGTATGTTTCATATACATCTTCCAGTTCG 5'
81	Arabidopsis thaliana	TGCAGCTGCAGCATCATCAA	alignment	plot	GSM278334-4059	AT2G26500.2 cdna:known chromosome:TAIR10:2:11270218:11270874:1 gene:AT2G26500 transcript:AT2G26500.2	1	370	0.04	18	9	3.5	5' TGCAGCTGCAGCATCATCAA 3' \| \|\|o\|\|\|\|\|o\|\|o\|\| \|\|\| 3' GCTTAGGTTGACGTTGTGGTTGTTCTCATTCT 5'
82	Arabidopsis thaliana	AAGACGGCTGGGAAATGGCA	alignment	plot	GSM278334-4059	AT4G25740.1 cdna:known chromosome:TAIR10:4:13107250:13108827:-1 gene:AT4G25740 transcript:AT4G25740.1	2	515	0.02	2	1	3.5	5' AAGACGGCTGGGAAATGGCA 3' \|\|\|\|\|\|\|\|\|\|\|o\|\| oo\|\| 3' ACCTTTCTGCCGACCTTTAGTCGACCTCGAGG 5'
83	Arabidopsis thaliana	TCATCATCATCATCATCTTCT	alignment	plot	GSM278334-4059	AT3G29000.1 cdna:known chromosome:TAIR10:3:11005779:11006414:1 gene:AT3G29000 transcript:AT3G29000.1	2	215	0.03	4	0.0113636	1	5' TCATCATCATCATCATCTTCT 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| 3' TAGTAGTAGTAGTAGTAGTAGTAGAAGAACAA 5'
84	Arabidopsis thaliana	TGATTGAGCCGTGTCAATATC	alignment	plot	GSM278334-4059	AT4G00150.1 cdna:known chromosome:TAIR10:4:57199:59286:-1 gene:AT4G00150 transcript:AT4G00150.1	0	867	0	3	3	1	5' TGATTGAGCCGTGTCAATATC 3' \|\|\|\|\|\|\|\|\|\|\|o\|o\|\|\|\|\|\|\| 3' GACAACTAACTCGGCGCGGTTATAGGGGACTC 5'
85	Arabidopsis thaliana	TCATCATCATCATCATCTTCT	alignment	plot	GSM278334-4059	AT3G29000.1 cdna:known chromosome:TAIR10:3:11005779:11006414:1 gene:AT3G29000 transcript:AT3G29000.1	2	212	0	4	0.0113636	0	5' TCATCATCATCATCATCTTCT 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' TAGTAGTAGTAGTAGTAGTAGAAGAACAAACC 5'
86	Arabidopsis thaliana	TCCTCCACCACCGAGAGCAT	alignment	plot	GSM278334-4059	AT2G32690.3 cdna:known chromosome:TAIR10:2:13863717:13864596:-1 gene:AT2G32690 transcript:AT2G32690.3	2	591	0.04	7	1.75	3.5	5' TCCTCCACCACCGAGAGCAT 3' \|\|\|\|\|\|\|\|\|\|\|\| \|o \|\| \| 3' CTGGAGGAGGTGGTGG-TTACGGAAATGGTTT 5'
87	Arabidopsis thaliana	GTATAGCATAATGAGCAATCA	alignment	plot	GSM278334-4059	AT3G12120.2 cdna:known chromosome:TAIR10:3:3860445:3862880:-1 gene:AT3G12120 transcript:AT3G12120.2	2	1412	0.04	6	3	3	5' GTATAGCATAATGAGCAATCA 3' oo\|\|\|o\|\|\|\|\|\|\|\|\|\|\| o\|\| 3' AGGGTGTATTGTATTACTCGTCGGTTTTACAG 5'
88	Arabidopsis thaliana	GATCATGCTATCTCTTTGGA	alignment	plot	GSM278334-4059	AT2G17340.1 cdna:known chromosome:TAIR10:2:7541406:7544128:-1 gene:AT2G17340 transcript:AT2G17340.1	1	576	0.01	2	2	4	5' GATCATGCTATCTCTTTGGA 3' \|\| \|\|\|o\|o\|\|\|o\|\|\| o\|\| 3' CTTTCT-GTATGGTAGGGAACTCTTTTGAAGT 5'
89	Arabidopsis thaliana	TGGTGTCGATCGACACCAAGG	alignment	plot	GSM278334-4059	AT3G11830.1 cdna:known chromosome:TAIR10:3:3732661:3736374:1 gene:AT3G11830 transcript:AT3G11830.1	2	1641	0.03	2	1	4	5' TGGTGTCGATCGACACCAAGG 3' o\|\|\| \|\|\| \|\|\|\|\|\|\| \|\|\|o 3' AAGTGCCAAAGC-AGCTGTGATTCTTACTCCG 5'
90	Arabidopsis thaliana	TGACAGAAGAGAGTTAGCAC	alignment	plot	GSM278334-4059	AT2G33810.1 cdna:known chromosome:TAIR10:2:14305001:14306072:1 gene:AT2G33810 transcript:AT2G33810.1	0	797	0	6	6	2	5' TGACAGAAGAGAGTTAGCAC 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| 3' TCTGACTGTCTTCTCTCATTCGTTTCGGACAA 5'
91	Arabidopsis thaliana	TCCTTGAAAGGTTCATTATC	alignment	plot	GSM278334-4059	AT5G37352.1 cdna:pseudogene chromosome:TAIR10:5:14796126:14797001:1 gene:AT5G37352 transcript:AT5G37352.1	1	585	0.03	3	1.5	4	5' TCCTTGAAAGGTTCATTATC 3' \|\|\| \|\| \|\|\| \|o\|\|\|o\|\|\| 3' GGTAAGGTACATTCGAGGTAGTAGGTGGTGTA 5'
92	Arabidopsis thaliana	TCATGGTCAGATCCGTCATCC	alignment	plot	GSM278334-4059	AT5G37352.1 cdna:pseudogene chromosome:TAIR10:5:14796126:14797001:1 gene:AT5G37352 transcript:AT5G37352.1	1	585	0.01	3	1.5	4	5' TCATGGTCAGATCCGTCATCC 3' o\|\|\| \|\| \|\| \|\|\|o\|\|\|\|\|\| 3' GTAAGGTA-CATTCGAGGTAGTAGGTGGTGTA 5'
93	Arabidopsis thaliana	AGTGGCTGCAGCTGCAGCGAC	alignment	plot	GSM278334-4059	AT5G20020.1 cdna:known chromosome:TAIR10:5:6762724:6764671:1 gene:AT5G20020 transcript:AT5G20020.1	2	720	0.02	2	2	3.5	5' AGTGGCTGCAGCTGCAGCGAC 3' \|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|o \| 3' CCCCTCTCCGAC-TCGACGTCGTCGACGTTCT 5'
94	Arabidopsis thaliana	AGAATCTTGATGATGCTGCAG	alignment	plot	GSM278334-4059	AT3G62070.1 cdna:known chromosome:TAIR10:3:22983138:22984513:-1 gene:AT3G62070 transcript:AT3G62070.1	0	706	0.01	2	2	4	5' AGAATCTTGATGATGCTGCAG 3' \|\|\|\| \|\|\|\|\|o\| \|\| o\|\|\|\| 3' TGATTCTTCGAACTGC-ACAGCGTCTTCGATT 5'
95	Arabidopsis thaliana	ACTGTATATATGTAAGTGACA	alignment	plot	GSM278334-4059	AT2G17230.1 cdna:known chromosome:TAIR10:2:7494536:7496016:-1 gene:AT2G17230 transcript:AT2G17230.1	1	1239	0.04	3	3	4	5' ACTGTATATATGTAAGTGA-CA 3' \|\|\| \|\|\|\|\|\|\|o\|\|\|\| o\| \|\| 3' AATTTGAAATATATATATTCTTTAGTATTTCA 5'
96	Arabidopsis thaliana	TTCTTGCATATGTTCTTTATC	alignment	plot	GSM278334-4059	AT1G18450.1 cdna:known chromosome:TAIR10:1:6348107:6351975:1 gene:AT1G18450 transcript:AT1G18450.1	1	1588	0	3	3	3.5	5' TTCTTGCATATGTTCTTTATC 3' \|\|\|\|\| \|\|o\|\|\|\|\| \|\|\|\|\| 3' TTTGAAGAAGGTGTACAA-AAATACAAAAATT 5'
97	Arabidopsis thaliana	TGAGAAGAAGAAGAAGAAAA	alignment	plot	GSM278334-4059	AT3G15140.1 cdna:known chromosome:TAIR10:3:5099532:5101781:-1 gene:AT3G15140 transcript:AT3G15140.1	2	234	0.03	6	0.0093439	1.5	5' TGAGAAGAAGAAGAAGAAAA 3' o\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' TCTTCTTCTTCTTCTTCTTCTTTTCAGTCTCC 5'
98	Arabidopsis thaliana	TGCCTGGCTCCCTGTATGCC	alignment	plot	GSM278334-4059	AT1G77850.1 cdna:known chromosome:TAIR10:1:29272313:29275419:1 gene:AT1G77850 transcript:AT1G77850.1	0	1420	0	16	16	0.5	5' TGCCTGGCTCCCTGTATGCC 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\|o\|\|\|\|\| 3' TATAACGGACCGAGGGACGTACGGTCGTCCTT 5'
99	Arabidopsis thaliana	TACCAACCTTTCATCGTTCCC	alignment	plot	GSM278334-4059	AT3G60245.1 cdna:known chromosome:TAIR10:3:22268746:22270006:1 gene:AT3G60245 transcript:AT3G60245.1	2	77	0.05	2	2	4	5' TACCAACCTTTCATCGTTCCC 3' \| \|\|\|\|\|\| \|\|\| \|\|\|\|\|\| \| 3' TGCTAAGGTTGG-AAGAAGCAAGAGAAGCGGT 5'
100	Arabidopsis thaliana	GGAATCTTGATGATGCTGCAT	alignment	plot	GSM278334-4059	AT3G54990.1 cdna:known chromosome:TAIR10:3:20373718:20376522:-1 gene:AT3G54990 transcript:AT3G54990.1	0	976	0	4	4	1.5	5' GGAATCTTGATGATGCTGCAT 3' \|\|\|\|\|\|o\|\|\|\|\|\|\|\|\|\|\|\|\| 3' TTTCCCTTAGGACTACTACGACGTTGACAGAA 5'
101	Arabidopsis thaliana	ACTCGGCCAGGTAGTCGAGTG	alignment	plot	GSM278334-4059	AT1G04270.1 cdna:known chromosome:TAIR10:1:1141604:1143053:-1 gene:AT1G04270 transcript:AT1G04270.1	2	460	0	2	1	3.5	5' ACTCGGCCAGGTAGTCGAGTG 3' \|\|\|\|o\|\|\|\|\|\|\|\|\|\| \|\| oo 3' CTCTTGAGTCGGTCCATCA-CTGGTTAGTAGA 5'
102	Arabidopsis thaliana	TGAGAAGAAGAAGAAGAAAA	alignment	plot	GSM278334-4059	AT3G48160.2 cdna:known chromosome:TAIR10:3:17783331:17786099:1 gene:AT3G48160 transcript:AT3G48160.2	2	1540	0.03	6	0.0093439	1.5	5' TGAGAAGAAGAAGAAGAAAA 3' o\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' TCTTCTTCTTCTTCTTCTTCTTTTTCTTCTAG 5'
103	Arabidopsis thaliana	TTAGCTGAAGAAGCAGAGGAG	alignment	plot	GSM278334-4059	AT3G22220.1 cdna:known chromosome:TAIR10:3:7839616:7842874:-1 gene:AT3G22220 transcript:AT3G22220.1	0	2715	0.03	2	2	4	5' TTAGCTGAAGAAGCAGAGGAG 3' \| \|\| \|o\|\|\|\|\|\| \|\|\|o\|\|\| 3' AATGACTC-ATTTCTTCTTCTTCTCCTTCTTC 5'
104	Arabidopsis thaliana	TGAGAAGAAGAAGAAGAAAA	alignment	plot	GSM278334-4059	AT5G64816.2 cdna:known chromosome:TAIR10:5:25913000:25914027:1 gene:AT5G64816 transcript:AT5G64816.2	1	492	0	4	2	1.5	5' TGAGAAGAAGAAGAAGAAAA 3' o\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| 3' TATCGCTCTTCTTCTTCTTCTTCTTCTCTCGA 5'
105	Arabidopsis thaliana	CTATCATCATCATCCTCGTAA	alignment	plot	GSM278334-4059	AT5G40520.2 cdna:known chromosome:TAIR10:5:16231254:16234316:-1 gene:AT5G40520 transcript:AT5G40520.2	2	1338	0.05	4	0.0113636	3.5	5' CTATCATCATCATCCTCGTAA 3' \| \|\|\|\|\|\|\|\|\|\|\|\| \|\|o\| \| 3' AGTAG-TAGTAGTAGTAGTAGTAGTAATAGTA 5'
106	Arabidopsis thaliana	TGAATCGATTTGGCCGGGTC	alignment	plot	GSM278334-4059	AT3G60750.1 cdna:known chromosome:TAIR10:3:22453719:22457152:1 gene:AT3G60750 transcript:AT3G60750.1	2	2498	0.02	3	1.5	4	5' TGAATCGATTTGGCCGGGTC 3' \|\|\|\| \|\|o\|\|\|\|\|\|\| o\|\| 3' ATCTTCTTA-CTGAACCGGCGTAGTTGTTGTC 5'
107	Arabidopsis thaliana	AGCCATCATCATGTTCCTGT	alignment	plot	GSM278334-4059	AT2G24500.1 cdna:known chromosome:TAIR10:2:10401035:10402934:-1 gene:AT2G24500 transcript:AT2G24500.1	1	1167	0.02	2	2	4	5' AGCCATCATCATGTTCCTGT 3' \| \|\|\|\|\|\|\|\| \|\|\| \|\|\|\| 3' GATCTGGGTAGTAGAACATGGACCTCCAATCT 5'
108	Arabidopsis thaliana	TCATCTTCATCATCATCGTCA	alignment	plot	GSM278334-4059	AT4G12100.1 cdna:known chromosome:TAIR10:4:7246422:7248127:-1 gene:AT4G12100 transcript:AT4G12100.1	0	1295	0.05	2	2	2	5' TCATCTTCATCATCATCGTCA 3' \| \|\|\|o\|\|\|\|\|\|\|\|\|\|\|o\|\|\| 3' TCAAATTAGGAGTAGTAGTAGTAGTAGATAGG 5'
109	Arabidopsis thaliana	TTTTGGAAATTTGTCCTTACG	alignment	plot	GSM278334-4059	AT3G09360.1 cdna:known chromosome:TAIR10:3:2873449:2878591:1 gene:AT3G09360 transcript:AT3G09360.1	2	1953	0.04	2	2	3.5	5' TTTTGGAAATTTGTCCTTACG 3' \|\|\|\|\|o\|\|\|\|o\|\|\|\| \|o\| \| 3' CGGCAAAACTTTTAGACAGAAGTACAGCATAC 5'
110	Arabidopsis thaliana	TGAGAAGAAGAAGAAGAAAA	alignment	plot	GSM278334-4059	AT1G03190.1 cdna:known chromosome:TAIR10:1:775527:780027:1 gene:AT1G03190 transcript:AT1G03190.1	2	35	0.04	6	0.0093439	1.5	5' TGAGAAGAAGAAGAAGAAAA 3' o\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' TCTTCTTCTTCTTCTTCTTCTTTTAAAACGCA 5'
111	Arabidopsis thaliana	TCCTCTGTATCTTCGTTGTCA	alignment	plot	GSM278334-4059	AT4G10710.1 cdna:known chromosome:TAIR10:4:6601989:6606354:-1 gene:AT4G10710 transcript:AT4G10710.1	2	3287	0.03	2	2	3.5	5' TCCTCTGTATCTTCGTTGTCA 3' \|\|\|\|\|\| \| \|\|o\|\|\|o\|o\|\|\| 3' GAGAAGGAGAGA-AGGAGCGATAGTCTGAGTT 5'
112	Arabidopsis thaliana	TCATCATCATCATCATCTTCT	alignment	plot	GSM278334-4059	AT1G66620.1 cdna:known chromosome:TAIR10:1:24852806:24854153:-1 gene:AT1G66620 transcript:AT1G66620.1	2	996	0.03	4	0.0113636	1	5' TCATCATCATCATCATCTTCT 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| 3' TAGTAGTAGTAGTAGTAGAAGAAGAAGAAGTC 5'
113	Arabidopsis thaliana	TCATCATCATCATCATCTTCT	alignment	plot	GSM278334-4059	AT1G66620.1 cdna:known chromosome:TAIR10:1:24852806:24854153:-1 gene:AT1G66620 transcript:AT1G66620.1	2	999	0	4	0.0113636	0	5' TCATCATCATCATCATCTTCT 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' TAGTAGTAGTAGTAGTAGTAGAAGAAGAAGAA 5'
114	Arabidopsis thaliana	TCATCATCATCATCATCTTCT	alignment	plot	GSM278334-4059	AT1G66620.1 cdna:known chromosome:TAIR10:1:24852806:24854153:-1 gene:AT1G66620 transcript:AT1G66620.1	2	1002	0.01	4	0.0113636	1	5' TCATCATCATCATCATCTTCT 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| 3' TAGTAGTAGTAGTAGTAGTAGTAGAAGAAGAA 5'
115	Arabidopsis thaliana	GACGAAGAAGATGGTGATGTGAT	alignment	plot	GSM278334-4059	AT5G66800.1 cdna:known chromosome:TAIR10:5:26671423:26672514:1 gene:AT5G66800 transcript:AT5G66800.1	2	375	0.03	6	0.0093439	4	5' GACGAAGAAGATGGTGATGTGAT 3' \|\| \|\|\|\|\|\|\|\|\|\|o\|\|\| o \|\|\| 3' TCTTCTTCTTCTTCTACTACTCTTCTAACCAC 5'
116	Arabidopsis thaliana	CCTTTGGCACCTTTGTTGGC	alignment	plot	GSM278334-4059	AT5G60390.3 cdna:known chromosome:TAIR10:5:24288664:24290856:1 gene:AT5G60390 transcript:AT5G60390.3	2	1399	0.04	7	2.33333	4	5' CCTTTGGCACCTTTGTTGGC 3' \| \|\|\|\|\|\|\|\|\|o\|\| \|\| o\| 3' AGTAGTAAACCGTGGGAAGAAGTGACGTCGGA 5'
117	Arabidopsis thaliana	TAACTAAACATTGGTGTAGTA	alignment	plot	GSM278334-4059	AT2G31585.1 cdna:known chromosome:TAIR10:2:13446002:13446729:1 gene:AT2G31585 transcript:AT2G31585.1	2	647	0.03	2	0.666667	3.5	5' TAACTAAACATTGGTGTAGTA 3' o\|\|\|\|\|\|\|\|\|\| o\|\|\|\|\|o \| 3' TTAAGTTGATTTGTATTCACATTCTGAAAAGT 5'
118	Arabidopsis thaliana	GATGATGATGATACTCAGGA	alignment	plot	GSM278334-4059	AT2G36890.1 cdna:known chromosome:TAIR10:2:15485779:15487277:1 gene:AT2G36890 transcript:AT2G36890.1	0	772	0.01	2	2	3	5' GATGATGATGATACTCAGGA 3' \|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\| 3' ACTACTACTACTACTAGTAGTACTAGTGCTAC 5'
119	Arabidopsis thaliana	GAGAAGATGAAGCTGTTCTG	alignment	plot	GSM278334-4059	AT2G32500.1 cdna:known chromosome:TAIR10:2:13794426:13797227:-1 gene:AT2G32500 transcript:AT2G32500.1	1	899	0.03	2	2	4	5' GAGAAGATGAAGCTGTTCTG 3' \|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\| 3' GTGACTCTT-TACTTCTCGAAGACTGAAAAGA 5'
120	Arabidopsis thaliana	CCTCGTGGTCGAGTGATGTG	alignment	plot	GSM278334-4059	AT5G63030.1 cdna:known chromosome:TAIR10:5:25286223:25287694:1 gene:AT5G63030 transcript:AT5G63030.1	1	72	0	2	2	4	5' CCTCGTGGTCGAGTGATGTG 3' \|\|\|\| \|\| \|\|\|\|\|\| \|\|\|\| 3' TACAGGAG-ACGAGCTCAAAACACGGTTAGAA 5'
121	Arabidopsis thaliana	CTATCATCATCATCCTCGTAA	alignment	plot	GSM278334-4059	AT3G14900.1 cdna:known chromosome:TAIR10:3:5013291:5015292:-1 gene:AT3G14900 transcript:AT3G14900.1	2	1349	0.01	4	0.0113636	3	5' CTATCATCATCATCCTCGTAA 3' \| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \| 3' AGTAG-TAGTAGTAGTAGTAGCAGTAACAGTC 5'
122	Arabidopsis thaliana	TTCTTGCATATGTTCTTTATC	alignment	plot	GSM278334-4059	AT3G25545.1 cdna:known chromosome:TAIR10:3:9276845:9278629:1 gene:AT3G25545 transcript:AT3G25545.1	1	774	0	2	2	3.5	5' TTCTTGCATATGTTCTTTATC 3' \|\|\|o\| \| \|\|\|\|\|\|\|\|\|\|\| \| 3' TTACAAGGA-GAATACAAGAAATCGACCGTGG 5'
123	Arabidopsis thaliana	TCTATCTTCTTCGTCTTCGAT	alignment	plot	GSM278334-4059	AT5G63650.1 cdna:known chromosome:TAIR10:5:25481517:25483719:-1 gene:AT5G63650 transcript:AT5G63650.1	2	1202	0.04	4	0.00569801	3	5' TCTATCTTCTTCGTCTTCGAT 3' \|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|o\|o 3' AAGAAGA-AGAAGAAGAAGAAGTTGGAGCAGG 5'
124	Arabidopsis thaliana	ACCCAATCTCTACTTCAGTCT	alignment	plot	GSM278334-4059	AT2G11890.2 cdna:known chromosome:TAIR10:2:4802783:4804375:1 gene:AT2G11890 transcript:AT2G11890.2	2	496	0.01	2	1	3.5	5' ACCCAATCTCTACTTCAGTCT 3' \|\| \|\|\|\|\|\|\|o \|\|\|\|\| \|\|\| 3' GTTATGAGTTAGAGGAGAAGT-AGAAGGAGGT 5'
125	Arabidopsis thaliana	CTTGTGGAGAGGAAGCAAGA	alignment	plot	GSM278334-4059	AT3G07860.1 cdna:known chromosome:TAIR10:3:2507880:2509509:1 gene:AT3G07860 transcript:AT3G07860.1	2	492	0.02	2	2	2.5	5' CTTGTGGAGAGGAAGCAAGA 3' \|\|\|\|\|\|\|\|\|\|\|o\| \| \|\|\|\| 3' TTCAGAACACCTCTCTTGCTTTCTCTGCTACG 5'
126	Arabidopsis thaliana	GGTCGAGTGAAGTGATCGAGT	alignment	plot	GSM278334-4059	AT4G33010.2 cdna:known chromosome:TAIR10:4:15926670:15931332:-1 gene:AT4G33010 transcript:AT4G33010.2	2	3405	0.05	4	2	4	5' GGTCGAGTGAAGTGATCGAGT 3' o \|\|\|\|o\|\|\|\|o\|o\|\| \|\|\|\| 3' TACATAAGCTTACTTTATTATCTCATTCTCTG 5'
127	Arabidopsis thaliana	TTCGCTTGCAGAGAGAAATCAC	alignment	plot	GSM278334-4059	AT2G39675.1 cdna:known chromosome:TAIR10:2:16537288:16538277:-1 gene:AT2G39675 transcript:AT2G39675.1	0	379	0	15	15	1.5	5' TTCGCTTGCAGAGAGAAATCAC 3' \|\|\|\|\|\|\|\| \|\|\|\|\|o\|\|\|\|\|\|\| 3' AGATAAGCGAACATCTCTTTTTAGTGTTGTTT 5'
128	Arabidopsis thaliana	TTGGCATTCTGTCCACCTCC	alignment	plot	GSM278334-4059	AT1G10200.1 cdna:known chromosome:TAIR10:1:3346390:3347885:-1 gene:AT1G10200 transcript:AT1G10200.1	2	661	0.03	2	2	3.5	5' TTGGCATTCTGTCCACCTCC 3' o\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\| 3' GAACCGCCGTAAGAGAGGAGGAGGAAGCTCGA 5'
129	Arabidopsis thaliana	TCATCATCATCATCATCTTCT	alignment	plot	GSM278334-4059	AT5G08600.2 cdna:novel chromosome:TAIR10:5:2786187:2790241:1 gene:AT5G08600 transcript:AT5G08600.2	2	449	0	4	0.0113636	0	5' TCATCATCATCATCATCTTCT 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' TAGTAGTAGTAGTAGTAGTAGAAGACTGAGGT 5'
130	Arabidopsis thaliana	TGACCTGCCAAAGGAGAGTTG	alignment	plot	GSM278334-4059	AT1G19100.1 cdna:known chromosome:TAIR10:1:6594930:6601355:1 gene:AT1G19100 transcript:AT1G19100.1	2	2435	0.01	2	2	3.5	5' TGACCTGCCAAAGGAGAGTTG 3' o\|\|\|\| \|\|\|\|\|\|oo\|\|\|\|\| \| 3' CTATGCTGGTCGGTTTTTTCTCA-CAAAAAAA 5'
131	Arabidopsis thaliana	ACTCATAAGATCGTGACACGT	alignment	plot	GSM278334-4059	AT5G02960.1 cdna:known chromosome:TAIR10:5:693079:694515:-1 gene:AT5G02960 transcript:AT5G02960.1	2	654	0.02	2	2	3.5	5' ACTCATAAGATCGTGACACGT 3' \|\|\|\|\|\|\|\|o\|\| \|\|o\|\|\|\|o 3' TTTTTGAGTATTTTA-CATTGTGTTTTAGTTC 5'
132	Arabidopsis thaliana	TAAAGTCAATAATACCTTGAAG	alignment	plot	GSM278335-4060	AT3G09820.1 cdna:known chromosome:TAIR10:3:3011990:3014944:1 gene:AT3G09820 transcript:AT3G09820.1	0	1294	0	34	17	4	5' TAAAGTCAATAATACCTTGAAG 3' o\| \| \|\|\|\|\|\|\|\|\| \|\|\|o\|\|\| 3' TTGTGTGTGAGTTATTATCGAATTTCGGAGTT 5'
133	Arabidopsis thaliana	TGACAGAAGAAAGAGAGCAC	alignment	plot	GSM278335-4060	AT4G19150.1 cdna:known chromosome:TAIR10:4:10471331:10472742:-1 gene:AT4G19150 transcript:AT4G19150.1	0	1018	0.04	11	11	3.5	5' TGACAGAAGAAAGAGAGCAC 3' \| \|\|\|\|\|\| \|\|\|\|\|o\|\|\|\| 3' AGTAAATGTCTT-TTTCTTTCGTTATGTCTCT 5'
134	Arabidopsis thaliana	GGAAGAGGCAGTGCATGGGTA	alignment	plot	GSM278335-4060	AT3G08580.2 cdna:known chromosome:TAIR10:3:2605442:2607787:-1 gene:AT3G08580 transcript:AT3G08580.2	2	1313	0.02	3	1.5	3	5' GGAAGAGGCAGTGCATGGGTA 3' \|\|\|\|\|\|o\|\|\|o\|\|\| \|o\|\|o\| 3' TCCTCCTTCTTCGTTACGAATCCGTGGAGGAC 5'
135	Arabidopsis thaliana	CTGGGTTGTGATGTTCTGCA	alignment	plot	GSM278335-4060	AT1G73600.1 cdna:known chromosome:TAIR10:1:27670626:27673572:1 gene:AT1G73600 transcript:AT1G73600.1	2	1725	0.01	3	1	2.5	5' CTGGGTTGTGATGTTCTGCA 3' \|\|\|\|\|\|\| \|\|\|\|\| \|\|\|o\|\| 3' CCATGACCCAAAACTACTAGATGTATGTATGG 5'
136	Arabidopsis thaliana	AAGCACATCCTCTTGCTTCC	alignment	plot	GSM278335-4060	AT1G48860.2 cdna:known chromosome:TAIR10:1:18068725:18071365:-1 gene:AT1G48860 transcript:AT1G48860.2	0	1766	0.01	22	11	3.5	5' AAGCACATCCTCTTGCTTCC 3' \|\|o\|\|\| \| \|\|\|\|\|\|\|\|\| \| 3' TTTGTTTGTG-ATGAGAACGAAAGATTATTAC 5'
137	Arabidopsis thaliana	TGACAGAAGAAAGAGAGCAC	alignment	plot	GSM278335-4060	AT1G27360.3 cdna:known chromosome:TAIR10:1:9501777:9503869:1 gene:AT1G27360 transcript:AT1G27360.3	0	1250	0	17	4.25	1	5' TGACAGAAGAAAGAGAGCAC 3' \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| 3' TCCAACTGTCTTCTCTCTCTCGTGCCACCTAT 5'
138	Arabidopsis thaliana	TTCGCTTGCAGAGAGAAATCAC	alignment	plot	GSM278335-4060	AT2G27400.1 cdna:known chromosome:TAIR10:2:11721539:11722468:-1 gene:AT2G27400 transcript:AT2G27400.1	0	379	0	26	26	1.5	5' TTCGCTTGCAGAGAGAAATCAC 3' \|\|\|\|\|\|\|\| \|\|\|\|\|o\|\|\|\|\|\|\| 3' GAGTAAGCGAACATCTCTTTTTAGTGTTGTTT 5'
139	Arabidopsis thaliana	TTCCACAGCTTTCTTGAACTT	alignment	plot	GSM278335-4060	AT5G61440.1 cdna:known chromosome:TAIR10:5:24707500:24708893:1 gene:AT5G61440 transcript:AT5G61440.1	2	719	0	2	2	2.5	5' TTCCACAGCTTTCTTGAACTT 3' \|o\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' GAATAGGTTG-CGAAAGAACTTGAATAACTAT 5'
140	Arabidopsis thaliana	ACTCGACCAGGGGGTCGAGT	alignment	plot	GSM278335-4060	AT5G11040.1 cdna:known chromosome:TAIR10:5:3495287:3500922:1 gene:AT5G11040 transcript:AT5G11040.1	2	1360	0.04	3	3	4	5' ACTCGACCAGGGGGTCGAGT 3' \|\|\|\|\|\| \|\|\|\|\|o\| \|o\| \| 3' ACCCTGAGCTTGTCCCTCTGTT-ACCTTACTA 5'
141	Arabidopsis thaliana	TCTTCTTCGTCGCCATTACT	alignment	plot	GSM278335-4060	AT1G02090.2 cdna:known chromosome:TAIR10:1:387278:389647:-1 gene:AT1G02090 transcript:AT1G02090.2	2	793	0.04	2	0.666667	2.5	5' TCTTCTTCGTCG-CCATTACT 3' \|\|\|\|\|\|\|\|\|\| \| \|\|\|\|o\|\|\| 3' GGGTAGAAGAAGCATCAGGTAGTGAGGTGAAC 5'
142	Arabidopsis thaliana	GCCGCCATATCTCTCCGCCGTC	alignment	plot	GSM278335-4060	AT1G76730.1 cdna:known chromosome:TAIR10:1:28802925:28804784:-1 gene:AT1G76730 transcript:AT1G76730.1	2	293	0	4	4	4	5' GCCGCCATATCTCTCCGCCGTC 3' \|\|\|\|\|\|\|\|\|\| \|\|\|\|o \|\|o\| 3' TCAGAGGCGGTATAG-GAGGTAGCGGCGGCGC 5'
143	Arabidopsis thaliana	TTTGGATTGAAGGGAGCTCTA	alignment	plot	GSM278335-4060	AT5G06100.3 cdna:known chromosome:TAIR10:5:1837907:1840417:1 gene:AT5G06100 transcript:AT5G06100.3	2	1260	0.01	4	1	2.5	5' TTTGGATTGAAGGGAGCTCTA 3' \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|o\| 3' CTTATAACCTTACTTCCCTCGAGGTCGAAGTG 5'
144	Arabidopsis thaliana	ACTGTATATATGTAAGTGACA	alignment	plot	GSM278335-4060	AT4G23895.2 cdna:known chromosome:TAIR10:4:12422105:12424363:1 gene:AT4G23895 transcript:AT4G23895.2	0	962	0.03	8	4	4	5' ACTGTATATATGTAAGTGACA 3' \| \|o\|\|\|\|o\|\|o\|\|\|o\|\|\| \| 3' TTCGTAATATATGTATATTTACTTTTGATAGG 5'
145	Arabidopsis thaliana	TTTCGTTGTCTGTTCGACCTT	alignment	plot	GSM278335-4060	AT5G49330.1 cdna:known chromosome:TAIR10:5:19998952:20001378:-1 gene:AT5G49330 transcript:AT5G49330.1	0	386	0.01	25	25	3	5' TTTCGTTGTCTGTTCGACCTT 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| 3' AATTAAAGCAACAGACAAGAAGGACCATCTAC 5'
146	Arabidopsis thaliana	ATTGGTAGTGGATAAGGGGGC	alignment	plot	GSM278335-4060	AT2G39810.1 cdna:known chromosome:TAIR10:2:16612800:16618057:1 gene:AT2G39810 transcript:AT2G39810.1	2	2271	0.01	3	3	3.5	5' ATTGGTAGTGGATAAGGGGGC 3' \|\|\|o\|\|\|\|\|\|\| \|\|\|\|\|oo\| 3' GCCTTAATCATCACCGTTTCCCTTGACTTCTT 5'
147	Arabidopsis thaliana	TTGCTCGACCCGGGGGTCGAGT	alignment	plot	GSM278335-4060	AT5G31753.1 cdna:pseudogene chromosome:TAIR10:5:11696730:11697699:1 gene:AT5G31753 transcript:AT5G31753.1	1	243	0	5	1.66667	4	5' TTGCTCGACCCGGGGGTCGAGT 3' \|o\|\|\|\|\|\|\|\| o\|\|\|\|\|\|\|\| 3' GGTGTATGAGCTGGGGGTCCAGCTCACTGAAA 5'
148	Arabidopsis thaliana	TCACTCGACCACGAGGTCGAGTGT	alignment	plot	GSM278335-4060	AT5G31753.1 cdna:pseudogene chromosome:TAIR10:5:11696730:11697699:1 gene:AT5G31753 transcript:AT5G31753.1	1	243	0	5	1.66667	4	5' TCACTCGACCACGAGGTCGAGTGT 3' \| \|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\| 3' GTGTA-TGAGCTGGGGGTCCAGCTCACTGAAA 5'
149	Arabidopsis thaliana	TCCGGAGGGATTCCTTCCTT	alignment	plot	GSM278335-4060	AT4G05320.5 cdna:known chromosome:TAIR10:4:2718170:2720133:1 gene:AT4G05320 transcript:AT4G05320.5	2	420	0.01	3	0.6	3	5' TCCGGAGGGATTCCTTCCTT 3' \|\|\|\|\|\|\|\|o\|\| \|\|o\|\| \|\| 3' GACCAGGCCTCCTTATGGGAGAAACAGAACCT 5'
150	Arabidopsis thaliana	TTAGATGACCATCAACAAACT	alignment	plot	GSM278335-4060	AT1G02860.1 cdna:known chromosome:TAIR10:1:635144:637262:1 gene:AT1G02860 transcript:AT1G02860.1	2	269	0	17	8.5	1	5' TTAGATGACCATCAACAAACT 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' TTTAAATCTACTGGTAGTTGTTTGTTTAAGTC 5'
151	Arabidopsis thaliana	TCGGACCAGGCTTCATTCCCC	alignment	plot	GSM278335-4060	AT1G52150.1 cdna:known chromosome:TAIR10:1:19409711:19414678:-1 gene:AT1G52150 transcript:AT1G52150.1	2	1279	0.01	22	7.33333	2.5	5' TCGGACCAGGCTTCATTCCCC 3' o\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' CTTAGGCCTGGTCCGAAGTAAGGTCCGTAGAC 5'
152	Arabidopsis thaliana	TTCCACAGCTTTCTTGAACTT	alignment	plot	GSM278335-4060	AT5G27850.1 cdna:known chromosome:TAIR10:5:9873152:9874598:1 gene:AT5G27850 transcript:AT5G27850.1	2	542	0.03	32	32	3	5' TTCCAC-AGCTTTCTTGAACTT 3' \|\|\|\| \| \|\|\|\|\|\|\|\|oo\|\|\|\|\| 3' CGAAAGGAGATCGAAAGAGTTTGAAGGAAGGG 5'
153	Arabidopsis thaliana	CTTGTGGAGAGGAAGCAAGA	alignment	plot	GSM278335-4060	AT4G16980.1 cdna:known chromosome:TAIR10:4:9556978:9557812:1 gene:AT4G16980 transcript:AT4G16980.1	2	125	0.01	3	3	2	5' CTTGTGGAGAGGAAGCAAGA 3' \|\|\|\|\|\|o\|\|\|\|o\|\|\| \|\|\|\| 3' TTCCGAACACTTCTCTTTC-TTCTCCGGTACC 5'
154	Arabidopsis thaliana	TCCCAAATGTAGACAAAGCA	alignment	plot	GSM278335-4060	AT1G62860.1 cdna:pseudogene chromosome:TAIR10:1:23274676:23277017:-1 gene:AT1G62860 transcript:AT1G62860.1	2	425	0	2	2	1	5' TCCCAAATGTAGACAAAGCA 3' \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' TAGAACGGTTTACATCTGTTTCGTTTCCTGTT 5'
155	Arabidopsis thaliana	TCGACCTGGGGGTCGAGCGA	alignment	plot	GSM278335-4060	AT1G15405.1 cdna:known chromosome:TAIR10:1:5297875:5298166:-1 gene:AT1G15405 transcript:AT1G15405.1	2	57	0.03	9	9	3.5	5' TCGACCTGGGGGTCGAGCGA 3' o\|\|\|\|\|o\| \|\|\|o\|\|\|\|\| \| 3' TCTAGGCTGGGCACCCGGCTCGGTCACAAGGT 5'
156	Arabidopsis thaliana	GAGGAGGAGGAGCACCACCGT	alignment	plot	GSM278335-4060	AT1G13930.1 cdna:known chromosome:TAIR10:1:4761042:4761725:1 gene:AT1G13930 transcript:AT1G13930.1	2	392	0	16	5.33333	3	5' GAGGAGGAGGAGCACCACCGT 3' \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|oo 3' CAGCCTCCTCCTCCTGGTGGTCGTGGCCACCT 5'
157	Arabidopsis thaliana	TATCTCTGCAACTGCAACTGC	alignment	plot	GSM278335-4060	AT4G30990.1 cdna:novel chromosome:TAIR10:4:15084098:15097920:1 gene:AT4G30990 transcript:AT4G30990.1	1	6370	0	7	3.5	3.5	5' TATCTCTGCAACTGCAA-CTGC 3' \|\|\|\|\|\|\|\| \|\|\|\|o\|\|\| \|\| \| 3' GTATATAGAGACCTTGATGTTCGAAGGCCAAG 5'
158	Arabidopsis thaliana	TGACAGAAGAAAGAGAGCAC	alignment	plot	GSM278335-4060	AT1G53160.1 cdna:known chromosome:TAIR10:1:19806421:19807301:1 gene:AT1G53160 transcript:AT1G53160.1	0	602	0	4	4	2	5' TGACAGAAGAAAGAGAGCAC 3' \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| 3' ATCTACTGTCTTCTCTCTCTCGTCTGTCGAAG 5'
159	Arabidopsis thaliana	ATGATGCTGTTGGGTTTCTC	alignment	plot	GSM278335-4060	AT3G04290.1 cdna:known chromosome:TAIR10:3:1133320:1136316:-1 gene:AT3G04290 transcript:AT3G04290.1	2	1097	0.02	6	6	2.5	5' ATGATGCTGTTGGGTTTCTC 3' \|\|\|\|\| \|\|o\|\|\|\| \|\|\|\|\|\| 3' TTGCTACTAGGATAACCGAAAGAGACAGCCTA 5'
160	Arabidopsis thaliana	AGCTGGCTCTTCCGGGCGAA	alignment	plot	GSM278335-4060	AT2G32060.1 cdna:known chromosome:TAIR10:2:13639016:13640316:-1 gene:AT2G32060 transcript:AT2G32060.1	2	94	0.01	3	1	3	5' AGCTGGCTCTTCCGGGCGAA 3' \|\|\|\|\|\| \| \|\|\|\|\|oo\|\|\|\| 3' AAACTCGACC-AAAAGGCTTGCTTCTCTTCGT 5'
161	Arabidopsis thaliana	ACTTTTCACTGTTTGATTCGT	alignment	plot	GSM278335-4060	AT3G20300.1 cdna:known chromosome:TAIR10:3:7079617:7081921:-1 gene:AT3G20300 transcript:AT3G20300.1	1	1235	0	6	6	3.5	5' ACTTTTCACTGTTTGATTCGT 3' \| \|o\|\|\|\|\|\|o\|o\|\|\|\|\|\| \| 3' GGTATTAGAAGTGATAGACTAAG-AGGTAATA 5'
162	Arabidopsis thaliana	TTGACAGAAGATAGAGAGCAC	alignment	plot	GSM278335-4060	AT1G27370.1 cdna:known chromosome:TAIR10:1:9505201:9508280:-1 gene:AT1G27370 transcript:AT1G27370.1	0	2379	0	11	2.75	1	5' TTGACAGAAGATAGAGAGCAC 3' \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| 3' CATCAACTGTCTTCTCTCTCTCGTGACATCTT 5'
163	Arabidopsis thaliana	CTCGACCTGAGGGTCGAGTGGT	alignment	plot	GSM278335-4060	AT4G34050.1 cdna:known chromosome:TAIR10:4:16310775:16312216:1 gene:AT4G34050 transcript:AT4G34050.1	2	786	0.03	10	5	4	5' CTCGACCTGAGGGTCGAGTGGT 3' \|\|\|\|\| \|o\|\|\|\|\|\|\| \|\|oo\|o 3' TCTAGAGCTAGGCTCCCAG-TCGTCGTTCTCG 5'
164	Arabidopsis thaliana	TTGGACTGAAGGGAGCTCC	alignment	plot	GSM278335-4060	AT4G18390.1 cdna:known chromosome:TAIR10:4:10162953:10165562:-1 gene:AT4G18390 transcript:AT4G18390.1	2	1387	0.02	5	2.5	2.5	5' TTGGACTGAAGGGAGCTCC 3' \|\|\|\|\|\|\|\|\|\|\|\|\| \|o\|\| 3' ACTTAACCTGACTTCCCAGGGGGACAACTTTG 5'
165	Arabidopsis thaliana	TTGGACTGAAGGGAGCTCCCT	alignment	plot	GSM278335-4060	AT4G18390.1 cdna:known chromosome:TAIR10:4:10162953:10165562:-1 gene:AT4G18390 transcript:AT4G18390.1	2	1387	0.01	5	2.5	3	5' TTGGACTGAAGGGAGCTCCCT 3' \|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\| 3' ACTTAACCTGACTTCCCAGG-GGGACAACTTT 5'
166	Arabidopsis thaliana	ATTGCAATGGCAACACTAAA	alignment	plot	GSM278335-4060	AT5G07250.2 cdna:known chromosome:TAIR10:5:2274260:2275990:-1 gene:AT5G07250 transcript:AT5G07250.2	0	1028	0.01	8	4	3.5	5' ATTGCAATGGCAACACTAAA 3' \|\|\|o\|\| \| \| \|\|\|\|\|\|\|\|\| 3' GTGTTAATGTGA-CTTTGTGATTTTTTATTGT 5'
167	Arabidopsis thaliana	TGGGTGGTGATCATATAAGAT	alignment	plot	GSM278335-4060	AT1G69770.1 cdna:known chromosome:TAIR10:1:26248318:26253585:-1 gene:AT1G69770 transcript:AT1G69770.1	2	2037	0	9	9	2	5' TGGGTGGTGATCATATAAGAT 3' \|\|\|\|\|o\|\|\|\|\|\|\|\|\|\|\|\|\|o 3' ATTCTCCCACTACTAGTATATTCTGTACGAAA 5'
168	Arabidopsis thaliana	TTCGCTTGCAGAGAGAAATCAC	alignment	plot	GSM278335-4060	AT2G39681.1 cdna:known chromosome:TAIR10:2:16539384:16540417:-1 gene:AT2G39681 transcript:AT2G39681.1	0	418	0	83	83	1.5	5' TTCGCTTGCAGAGAGAAATCAC 3' \|\|\|\|\|\|\|\| \|\|\|\|\|o\|\|\|\|\|\|\| 3' TAGTAAGCGAACCTCTCTTTTTAGTGTTTTGG 5'
169	Arabidopsis thaliana	TGTCTTCATCGTCATCACAA	alignment	plot	GSM278335-4060	AT4G17100.1 cdna:known chromosome:TAIR10:4:9609910:9612655:-1 gene:AT4G17100 transcript:AT4G17100.1	2	221	0.01	3	1.5	2.5	5' TGTCTTCATCGTCATCACAA 3' \|\|o\|\|\|\|\|\|\|o\|\|\|o\|\|\| \| 3' CTCAACGGAAGTAGTAGTGGTGGTAGCAGAGG 5'
170	Arabidopsis thaliana	TGATTGAGCCGTGTCAATATC	alignment	plot	GSM278335-4060	AT3G60630.1 cdna:known chromosome:TAIR10:3:22410365:22412608:-1 gene:AT3G60630 transcript:AT3G60630.1	0	1056	0	92	92	1	5' TGATTGAGCCGTGTCAATATC 3' \|\|\|\|\|\|\|\|\|\|\|o\|o\|\|\|\|\|\|\| 3' CAACACTAACTCGGCGCGGTTATAGGGAACGC 5'
171	Arabidopsis thaliana	TGAGAAGAAGAAGAAGAAAA	alignment	plot	GSM278335-4060	AT5G11000.1 cdna:known chromosome:TAIR10:5:3479029:3480425:-1 gene:AT5G11000 transcript:AT5G11000.1	1	50	0.04	5	5	3	5' TGAGAAGAAGAAGAAGAAAA 3' o\|\|\|\|\|\|\|\|\|\|\|\|\|o \|\|\| 3' ACCCCTTCTTCTTCTTCTTTCTTTCTTATTTT 5'
172	Arabidopsis thaliana	TTGAGCCGTGCCAATATCACG	alignment	plot	GSM278335-4060	AT3G60630.1 cdna:known chromosome:TAIR10:3:22410365:22412608:-1 gene:AT3G60630 transcript:AT3G60630.1	2	1053	0	23	23	2.5	5' TTGAGCCGTGCCAATATCACG 3' \|\|\|\|\|\|\|\|o\|\|\|\|\|\|\|\|\| \| 3' CACTAACTCGGCGCGGTTATAGGGAACGCGCT 5'
173	Arabidopsis thaliana	ATCGAAGGAGATGGAGGACG	alignment	plot	GSM278335-4060	AT3G26200.1 cdna:known chromosome:TAIR10:3:9589282:9591179:1 gene:AT3G26200 transcript:AT3G26200.1	0	1445	0.03	18	18	4	5' ATCGAAGGAGATGGAGGACG 3' \|\|\|o\|\|\|o\|\| \|oo\|\|o\|\|o 3' AGGTTAGTTTCTTC-ATTTCTTGTAATTCATT 5'
174	Arabidopsis thaliana	ACGGTTCCGAGTTCGGGTTCG	alignment	plot	GSM278335-4060	AT4G00750.1 cdna:known chromosome:TAIR10:4:314353:317675:1 gene:AT4G00750 transcript:AT4G00750.1	1	1070	0	2	2	4	5' ACGGTTCCGAGTTCGGGTTCG 3' \|\| \|o\|\|\|\|\|\|\|\| \|o\| \|\|\| 3' ACTCTGACGAGGCTCAA-CTCTAGCAGAGATC 5'
175	Arabidopsis thaliana	CGACCCAAGAGCTTTGGGTCT	alignment	plot	GSM278335-4060	AT5G16990.1 cdna:known chromosome:TAIR10:5:5581658:5584029:-1 gene:AT5G16990 transcript:AT5G16990.1	2	1061	0.01	4	4	3	5' CGAC-CCAAGAGCTTTGGGTCT 3' \|o\|\| \|\|\|\|\|\|o\|\|\|\|\|\|\|\| \| 3' GTGGTTGAGGTTCTTGAAACCCATAAACAGCA 5'
176	Arabidopsis thaliana	TTCCACAGCTTTCTTGAACTT	alignment	plot	GSM278335-4060	AT4G24150.1 cdna:known chromosome:TAIR10:4:12535972:12539387:1 gene:AT4G24150 transcript:AT4G24150.1	0	848	0	12	12	3	5' TTCCACA-GCTTTCTTGAACTT 3' \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| 3' ACTAAGGTGTACGAAAGAACTTGCTCCTGCCG 5'
177	Arabidopsis thaliana	TTAGATTCACGCACAAACTCG	alignment	plot	GSM278335-4060	AT1G31280.1 cdna:known chromosome:TAIR10:1:11181711:11185344:1 gene:AT1G31280 transcript:AT1G31280.1	0	3233	0	76	76	1	5' TTAGATTCACGCACAAACTCG 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' GGTTAATCTAAGTGCGTGTTTGAGGAAAGATG 5'
178	Arabidopsis thaliana	TCCAAAGGGATCGCATTGATCC	alignment	plot	GSM278335-4060	AT1G12820.1 cdna:known chromosome:TAIR10:1:4368760:4371293:-1 gene:AT1G12820 transcript:AT1G12820.1	0	1895	0	14	14	2	5' TCCAAAGGGATCGCATTGATCC 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \| 3' CTGTAGGTTTCCCTAGCGTAACAAAGCATGGA 5'
179	Arabidopsis thaliana	TACAAGCAGTTGCAGTTGCA	alignment	plot	GSM278335-4060	ATCG00020.1 cdna:known chromosome:TAIR10:Pt:383:1444:-1 gene:ATCG00020 transcript:ATCG00020.1	2	463	0.02	12	12	3	5' TACAAGCAGTTGCAGTTGCA 3' \|\| \|\|\|\|\|\|o\|\|\|\|o\|\|\|\| 3' TCTTTTG-TCGTCAGCGTCGACGTTGTCCTCG 5'
180	Arabidopsis thaliana	TAGACCATTTGTGAGAAGGGA	alignment	plot	GSM278335-4060	AT3G57230.1 cdna:known chromosome:TAIR10:3:21177423:21180932:1 gene:AT3G57230 transcript:AT3G57230.1	2	796	0	6	3	0.5	5' TAGACCATTTGTGAGAAGGGA 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|o\|\| 3' ACAGATCTGGTAAACACTCTTCTCTTAAGAAC 5'
181	Arabidopsis thaliana	TTTCGTTGTCTGTTCGACCTT	alignment	plot	GSM278335-4060	AT2G47460.1 cdna:known chromosome:TAIR10:2:19476337:19479478:1 gene:AT2G47460 transcript:AT2G47460.1	0	402	0	8	8	3	5' TTTCGTTGTCTGTTCGACCTT 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| 3' AAATAAAGCAACAGACAAGAGGGACCATCTAC 5'
182	Arabidopsis thaliana	AAACGACGTCGTTGGTGATT	alignment	plot	GSM278335-4060	AT5G40350.1 cdna:known chromosome:TAIR10:5:16138544:16141134:-1 gene:AT5G40350 transcript:AT5G40350.1	2	671	0.03	5	5	3	5' AAACGACGTCGTTGGTGATT 3' \| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \| 3' CAACTATGCTGCAGCAACCTCTTATGTATAGG 5'
183	Arabidopsis thaliana	TGACAGAAGAAAGAGAGCAC	alignment	plot	GSM278335-4060	AT3G15270.1 cdna:known chromosome:TAIR10:3:5140365:5141348:-1 gene:AT3G15270 transcript:AT3G15270.1	0	655	0.02	28	28	3	5' TGACAGAAGAAAGAGAGCAC 3' \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| 3' ATCTACTGTCTTCTCTCTCTCGCCCTCCCAAA 5'
184	Arabidopsis thaliana	TTCGAGGCCTATTAAACCTCTG	alignment	plot	GSM278335-4060	AT5G54770.1 cdna:known chromosome:TAIR10:5:22246592:22248332:1 gene:AT5G54770 transcript:AT5G54770.1	2	1179	0.01	21	21	4	5' TTCGAGGCCTATTAAACCTCTG 3' \|\|\|o\|\|o\| \|\|\|\|\|\|\|\| o\|\|o 3' TTTCAAGTTCTGTATAATTTGTGGATTTGAGG 5'
185	Arabidopsis thaliana	TAAGTTAAGATTTGTGAAGAA	alignment	plot	GSM278335-4060	AT1G18090.1 cdna:known chromosome:TAIR10:1:6224501:6227822:1 gene:AT1G18090 transcript:AT1G18090.1	0	1818	0.01	6	3	2.5	5' TAAGTTAAGATTTGTGAAGAA 3' \|\|\|o\|\|\|\|\|\| \|\|o\|o\|\|\|\|\| 3' TAGTATTTAATTCTCAATATTTCTTCGATTCT 5'
186	Arabidopsis thaliana	GGAATCTTGATGATGCTGCAT	alignment	plot	GSM278335-4060	AT4G36920.1 cdna:known chromosome:TAIR10:4:17400847:17403332:1 gene:AT4G36920 transcript:AT4G36920.1	0	1340	0	25	12.5	2	5' GGAATCTTGATGATGCTGCAT 3' o\|\|\|\|\|o\|\|\|\|\|\|\|\|\|\|\|\|\| 3' CCTCTCTTAGGACTACTACGACGTCGTAAACA 5'
187	Arabidopsis thaliana	TCCGGAGGGATTCCTTCCTT	alignment	plot	GSM278335-4060	AT4G05320.6 cdna:known chromosome:TAIR10:4:2718187:2719988:1 gene:AT4G05320 transcript:AT4G05320.6	2	403	0.01	3	0.6	3	5' TCCGGAGGGATTCCTTCCTT 3' \|\|\|\|\|\|\|\|o\|\| \|\|o\|\| \|\| 3' GACCAGGCCTCCTTATGGGAGAAACAGAACCT 5'
188	Arabidopsis thaliana	GGCGCCTCTCCATTGGCAGG	alignment	plot	GSM278335-4060	AT5G19090.1 cdna:known chromosome:TAIR10:5:6387489:6390024:1 gene:AT5G19090 transcript:AT5G19090.1	0	1458	0.01	6	3.33333	3.5	5' GGCGCCTCTCCATTGGCAGG 3' o \|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\| 3' GTGGTGGCGGAG-GGTAACCGGCCTTTGGACC 5'
189	Arabidopsis thaliana	TTCCACAGCTTTCTTGAACTT	alignment	plot	GSM278335-4060	AT2G22840.1 cdna:known chromosome:TAIR10:2:9728756:9731301:1 gene:AT2G22840 transcript:AT2G22840.1	0	792	0	49	49	3	5' TTCCACA-GCTTTCTTGAACTT 3' \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| 3' CGGAAGGTGTCCGAAAGAACTTGCTACCGCCG 5'
190	Arabidopsis thaliana	GATGGATATGTCTTCAAGGAC	alignment	plot	GSM278335-4060	AT3G58730.1 cdna:known chromosome:TAIR10:3:21718257:21719980:-1 gene:AT3G58730 transcript:AT3G58730.1	2	885	0.03	4	4	3	5' GATGGATATGTCTTCAAGGAC 3' \|\|o\|\| \|\|\|\|\|\|\|\|\|\|\|o\|\| 3' AGACGTATCTCTACAGAAGTTCTTGGTAAAGG 5'
191	Arabidopsis thaliana	CTCGCAAATCCCTCGCAGAA	alignment	plot	GSM278335-4060	AT5G14570.1 cdna:known chromosome:TAIR10:5:4695084:4697078:-1 gene:AT5G14570 transcript:AT5G14570.1	2	1081	0.02	4	4	3	5' CTCGCAAATCCCTCGCAGAA 3' \|\|\| \|\|\|\|\|\| \|\|\|\| \|\|\|\| 3' AAGTGAG-GTTTAGAGAGCATCTTTATAGGCC 5'
192	Arabidopsis thaliana	AAACGACGTCGTTTCGTTCT	alignment	plot	GSM278335-4060	AT5G64700.1 cdna:known chromosome:TAIR10:5:25865172:25866927:-1 gene:AT5G64700 transcript:AT5G64700.1	0	1124	0.02	4	4	3.5	5' AAACGACGTCGTTT-CGTTCT 3' \| \|\|\|\|\|o\|\|\|\|\|\| \| \|\|\|\| 3' AACGTGTGCTGTAGCAAAAGGAAGACATTTAG 5'
193	Arabidopsis thaliana	TGAGAAGAAGAAGAAGAAAA	alignment	plot	GSM278335-4060	AT2G40520.1 cdna:known chromosome:TAIR10:2:16923068:16925914:1 gene:AT2G40520 transcript:AT2G40520.1	2	1787	0.03	30	0.0472016	1.5	5' TGAGAAGAAGAAGAAGAAAA 3' o\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' TCTTCTTCTTCTTCTTCTTCTTTTTCTTTTTG 5'
194	Arabidopsis thaliana	GGTGGTGCGACAGGCTTTGGT	alignment	plot	GSM278335-4060	AT3G18780.1 cdna:known chromosome:TAIR10:3:6474871:6477204:1 gene:AT3G18780 transcript:AT3G18780.1	2	1216	0.03	3	1.5	3.5	5' GGTGGTGCGACAGGCTTTGGT 3' \|\|\|\|\|\|\|\|o\|\| \|o\|o\|\|oo\| 3' AAGTCCACCACGTTG-CTGGAATTAGAAGTAC 5'
195	Arabidopsis thaliana	AAACGACGTCGTTTCGTTCT	alignment	plot	GSM278335-4060	AT4G11080.1 cdna:known chromosome:TAIR10:4:6760867:6763272:-1 gene:AT4G11080 transcript:AT4G11080.1	2	120	0.01	4	4	2.5	5' AAACGACGTCGTTTCGTTCT 3' \|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|o 3' AGAGTTTGCTGAAGCAAAGAAAGGGGAACAGA 5'
196	Arabidopsis thaliana	CATGATCTTGTCTTCCTCTC	alignment	plot	GSM278335-4060	AT1G25570.1 cdna:known chromosome:TAIR10:1:8991826:8995496:-1 gene:AT1G25570 transcript:AT1G25570.1	2	1807	0	4	4	1.5	5' CATGATCTTGTCTTCCTCTC 3' \|\|\|o\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| 3' TTCAGTATTAGTACAGAAGGAGAGGTCTACGT 5'
197	Arabidopsis thaliana	TACCATCTCTTGAGGAACTTGG	alignment	plot	GSM278335-4060	AT1G07930.1 cdna:known chromosome:TAIR10:1:2458244:2460790:1 gene:AT1G07930 transcript:AT1G07930.1	2	1273	0.03	18	3.6	4	5' TACCATCTCTTGAGGAACTTGG 3' o\|\|\|\|\| \|\|\|\| \|o\|\|\| \|\|\|\| 3' CGTAGTGGTA-AGAAGTTCTTAAACCCGAGGA 5'
198	Arabidopsis thaliana	TCCACTTCCGTTGTAGCTTCG	alignment	plot	GSM278335-4060	AT4G37685.1 cdna:known chromosome:TAIR10:4:17705049:17706089:1 gene:AT4G37685 transcript:AT4G37685.1	1	464	0	3	3	4	5' TCCACTTCC-GTTGTAGCTTCG 3' \| \|\|\|\|\|\|\| \|o\|\|\|\|o\|o\|\|o 3' TCTACGTGAAGGACGACATTGGAGTCAGACGT 5'
199	Arabidopsis thaliana	TCATCATCATCATCATCGTAT	alignment	plot	GSM278335-4060	AT1G60220.1 cdna:known chromosome:TAIR10:1:22208332:22212171:1 gene:AT1G60220 transcript:AT1G60220.1	0	797	0.03	60	2.85714	1.5	5' TCATCATCATCATCATCGT-AT 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|o\| \|\| 3' TAGTAGTAGTAGTAGTAGTAGTAGTAGTTAGT 5'
200	Arabidopsis thaliana	CTATCATCATCATCCTCGTAA	alignment	plot	GSM278335-4060	AT1G60220.1 cdna:known chromosome:TAIR10:1:22208332:22212171:1 gene:AT1G60220 transcript:AT1G60220.1	0	797	0.03	60	2.85714	3.5	5' CTATCATCATCATCCTCGTAA 3' \| \|\|\|\|\|\|\|\|\|\|\|\| \|\|o\| \| 3' AGTAG-TAGTAGTAGTAGTAGTAGTAGTTAGT 5'
201	Arabidopsis thaliana	ACTGTATATATGTAAGTGACA	alignment	plot	GSM278335-4060	AT1G63330.1 cdna:known chromosome:TAIR10:1:23489840:23491519:1 gene:AT1G63330 transcript:AT1G63330.1	1	1295	0.01	5	2.5	4	5' ACT-GTATATATGTAAGTGACA 3' \| \| \|\|\|\|\|\|\|\|\|\|\|\|o\|o \|\| 3' GTATCATCATATATACATTTATAGTTCAAAAT 5'
202	Arabidopsis thaliana	GAGCATTGTGGAGATCAAAT	alignment	plot	GSM278335-4060	AT1G65060.2 cdna:known chromosome:TAIR10:1:24167202:24171502:-1 gene:AT1G65060 transcript:AT1G65060.2	2	1951	0.02	14	7	2.5	5' GAGCATTGTGGAGATCAAAT 3' o\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\| 3' GTGTTTCGTAACACCTAT-GTTTACTTGCAAA 5'
203	Arabidopsis thaliana	TCAATGCATTGAAAGTGACTA	alignment	plot	GSM278335-4060	AT1G63330.1 cdna:known chromosome:TAIR10:1:23489840:23491519:1 gene:AT1G63330 transcript:AT1G63330.1	2	775	0	4	1	1	5' TCAATGCATTGAAAGTGACTA 3' \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| 3' AGCTAGTTACGTAACTTGCACTGATTTAATCC 5'
204	Arabidopsis thaliana	TTGACAGAAGATAGAGAGCAC	alignment	plot	GSM278335-4060	AT5G43270.2 cdna:known chromosome:TAIR10:5:17360305:17363773:-1 gene:AT5G43270 transcript:AT5G43270.2	2	1160	0	10	3.33333	1	5' TTGACAGAAGATAGAGAGCAC 3' \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| 3' CTTAAACTGTCTTCTCTCTCTCGTGGTAGTTC 5'
205	Arabidopsis thaliana	TCGACCAGGGGGTCGAGTGAT	alignment	plot	GSM278335-4060	AT1G70730.3 cdna:known chromosome:TAIR10:1:26669020:26673166:-1 gene:AT1G70730 transcript:AT1G70730.3	2	1913	0.04	5	1.66667	4	5' TCGACCAGGGGGTCGAGTG-AT 3' \|\|o\|\|\|\|\|\|\|\|oo\|o\|\| \| \|\| 3' TTGTAGTTGGTCCCCTGGTTCTCGTAGGACTC 5'
206	Arabidopsis thaliana	ACTCGACCAGGGGGTCGAGTG	alignment	plot	GSM278335-4060	AT1G70730.3 cdna:known chromosome:TAIR10:1:26669020:26673166:-1 gene:AT1G70730 transcript:AT1G70730.3	2	1915	0.03	5	1.66667	4	5' ACTCGACCAGGGGGTCGAGTG 3' \| \|\|o\|\|\|\|\|\|\|\|oo\|o\|\| \| 3' GTTGT-AGTTGGTCCCCTGGTTCTCGTAGGAC 5'
207	Arabidopsis thaliana	TGCCTGGCTCCCTGTATGCC	alignment	plot	GSM278335-4060	AT2G28350.1 cdna:known chromosome:TAIR10:2:12114331:12116848:1 gene:AT2G28350 transcript:AT2G28350.1	2	1340	0	25	25	1	5' TGCCTGGCTCCCTGTATGCC 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| 3' TCGAACGGACCGAGGGACATAAGGACGTCCTC 5'
208	Arabidopsis thaliana	TTGGACTGAAGGGAGCTCC	alignment	plot	GSM278335-4060	AT3G15030.2 cdna:known chromosome:TAIR10:3:5061681:5064038:1 gene:AT3G15030 transcript:AT3G15030.2	2	1487	0	26	8.66667	2.5	5' TTGGACTGAAGGGAGCTCC 3' o\|\|\|\|\|\|\|\|\|\|\|\| o\|o\|\| 3' CATTGACCTGACTTCCCCTGGGGAGACTCTTA 5'
209	Arabidopsis thaliana	TTGGACTGAAGGGAGCTCCCT	alignment	plot	GSM278335-4060	AT3G15030.2 cdna:known chromosome:TAIR10:3:5061681:5064038:1 gene:AT3G15030 transcript:AT3G15030.2	2	1487	0.03	26	8.66667	3.5	5' TTGGACTGAAGGGAGCTCCCT 3' o\|\|\|\|\|\|\|\|\|\|\|\| o\|o\|\| \| 3' CATTGACCTGACTTCCCCTGGGG-AGACTCTT 5'
210	Arabidopsis thaliana	TGACAGAAGAAAGAGAGCAC	alignment	plot	GSM278335-4060	AT5G43270.2 cdna:known chromosome:TAIR10:5:17360305:17363773:-1 gene:AT5G43270 transcript:AT5G43270.2	2	1159	0.01	7	2.33333	1	5' TGACAGAAGAAAGAGAGCAC 3' \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| 3' TTAAACTGTCTTCTCTCTCTCGTGGTAGTTCT 5'
211	Arabidopsis thaliana	TGTTGCCGTAGCTGCAGCGGC	alignment	plot	GSM278335-4060	AT3G16100.1 cdna:known chromosome:TAIR10:3:5459172:5460790:1 gene:AT3G16100 transcript:AT3G16100.1	0	686	0	23	23	4	5' TGTTGCCGTAGCTGCAGCGGC 3' \|\|\|\|\|\|\|\| \|\|\|o \|\|\|\| o\| 3' AGAAACAACGGC-TCGGGGTCGATGTAGTTAC 5'
212	Arabidopsis thaliana	ACCATCAATTCATCGTGGCCG	alignment	plot	GSM278335-4060	AT4G18120.1 cdna:known chromosome:TAIR10:4:10038126:10042248:1 gene:AT4G18120 transcript:AT4G18120.1	0	2608	0	17	8.5	4	5' ACCATCAATTCATCGTGGCCG 3' \|\|\|\|\|\|\|\|\|\|\|\| \|o\|\| \| o 3' GTGTTGGTAGTTAAGT-GTACAGATCTTGTTA 5'
213	Arabidopsis thaliana	TCGCTTGGTGCAGGTCGGGA	alignment	plot	GSM278335-4060	AT1G48410.2 cdna:known chromosome:TAIR10:1:17886098:17892586:-1 gene:AT1G48410 transcript:AT1G48410.2	2	522	0	9	3	2.5	5' TCGCTTGGTGCAGGTCGGGA 3' \| \|\|\|\|\|o\|\|\|\|\| \|\|\|\|\|\| 3' CTCCATCGAACTACGTCGAGCCCTTGACTAAC 5'
214	Arabidopsis thaliana	TCTTGCTTAAATGAGTATTCCA	alignment	plot	GSM278335-4060	AT3G25795.1 cdna:known chromosome:TAIR10:3:9417551:9418705:-1 gene:AT3G25795 transcript:AT3G25795.1	0	888	0.01	8	8	0.5	5' TCTTGCTTAAATGAGTATTCCA 3' \|\|\|\|\|\|\|o\|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' TTGTAGAACGAGTTTACTCATAAGGTACCTCT 5'
215	Arabidopsis thaliana	ACCCTCACAAATTCCTCGCA	alignment	plot	GSM278335-4060	AT4G22840.1 cdna:known chromosome:TAIR10:4:11991497:11993770:-1 gene:AT4G22840 transcript:AT4G22840.1	1	275	0.02	3	3	4	5' ACCCTCACAAATTCCTCGCA 3' \|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\| 3' TAGATGCG-GTGTTTAAGGAGCTAGGCGGTTG 5'
216	Arabidopsis thaliana	GATGATGATGATACTCAGGA	alignment	plot	GSM278335-4060	AT1G13430.1 cdna:known chromosome:TAIR10:1:4606500:4607747:1 gene:AT1G13430 transcript:AT1G13430.1	0	446	0.03	2	2	3.5	5' GATGATGATGATACTCAGGA 3' \|\|\|\|\|\|\|\|\|\|\|\| \| \|\|o\| 3' ACTACTACTACTACTACTATTCTTGAACCAGT 5'
217	Arabidopsis thaliana	TCCTCCACCACCGAGAGCATT	alignment	plot	GSM278335-4060	AT2G32690.1 cdna:known chromosome:TAIR10:2:13863717:13864596:-1 gene:AT2G32690 transcript:AT2G32690.1	2	615	0.03	25	6.25	3.5	5' TCCTCCACCACCGAGAGCATT 3' \|\|\|\|\|\|\|\|\|\|\|\| \|o \|\| \|\| 3' CTGGAGGAGGTGGTGG-TTACGGAAATGGTTT 5'
218	Arabidopsis thaliana	TGCTGGTGGTGCTCCTCCAT	alignment	plot	GSM278335-4060	AT3G07050.1 cdna:known chromosome:TAIR10:3:2229590:2232361:-1 gene:AT3G07050 transcript:AT3G07050.1	2	165	0.04	4	4	3.5	5' TGCTGGTGGTGCTCCTCCAT 3' \| \|\| \|\|\|\|\|\|\|\|\|\|\| \|\|o 3' GAAGAAGAACACCACGAGGAAGTGGAAAAAGT 5'
219	Arabidopsis thaliana	TGAGAAGAAGAAGAAGAAAA	alignment	plot	GSM278335-4060	AT5G07842.1 cdna:known chromosome:TAIR10:5:2506634:2508435:-1 gene:AT5G07842 transcript:AT5G07842.1	1	80	0.04	7	3.5	3	5' TGA-GAAGAAGAAGAAGAAAA 3' \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| 3' AGGTCTACTTCTTCTTCTTCTTCTTCTTCTTT 5'
220	Arabidopsis thaliana	TGATTGAGCCGTGTCAATATC	alignment	plot	GSM278335-4060	AT2G45160.1 cdna:known chromosome:TAIR10:2:18617862:18620150:-1 gene:AT2G45160 transcript:AT2G45160.1	0	1014	0	68	68	1	5' TGATTGAGCCGTGTCAATATC 3' \|\|\|\|\|\|\|\|\|\|\|o\|o\|\|\|\|\|\|\| 3' TACCACTAACTCGGCGCGGTTATAGGGAACGC 5'
221	Arabidopsis thaliana	CATCGTCTTCTTCCTCGATC	alignment	plot	GSM278335-4060	AT5G54830.1 cdna:known chromosome:TAIR10:5:22273070:22276301:1 gene:AT5G54830 transcript:AT5G54830.1	1	2845	0.01	5	5	4	5' CATCGTCTTCTTCCTCGATC 3' \|\|\|o\|\|\|\|\|\|\|\|\| \|o \|\| 3' TACCTTAGTAGAAGAAGGTGTAAGGGGTTTTG 5'
222	Arabidopsis thaliana	TTGAGCCGTGCCAATATCACG	alignment	plot	GSM278335-4060	AT2G45160.1 cdna:known chromosome:TAIR10:2:18617862:18620150:-1 gene:AT2G45160 transcript:AT2G45160.1	2	1011	0	8	8	2.5	5' TTGAGCCGTGCCAATATCACG 3' \|\|\|\|\|\|\|\|o\|\|\|\|\|\|\|\|\| \| 3' CACTAACTCGGCGCGGTTATAGGGAACGCGCT 5'
223	Arabidopsis thaliana	TTGAAAATGTTGTTGCTGCTGCTG	alignment	plot	GSM278335-4060	AT5G25220.2 cdna:known chromosome:TAIR10:5:8736074:8738584:1 gene:AT5G25220 transcript:AT5G25220.2	2	245	0	3	1.5	3	5' TTGAAAATGTTGTTGCTGCTGCTG 3' \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \| 3' GAAGAACCTTTACAACAACGACAACGCCTCCT 5'
224	Arabidopsis thaliana	GAGGTCGAGTGTCTTCTACT	alignment	plot	GSM278335-4060	AT5G17540.1 cdna:known chromosome:TAIR10:5:5781987:5783706:-1 gene:AT5G17540 transcript:AT5G17540.1	2	1459	0.04	2	2	3	5' GAGGTCGAGTGTCTTCTACT 3' \|\|\| \|\|\|\|\|\| \|\|\|\| \|\|\|\| 3' GTCTCTCAAGCTCAAAGAA-ATGATTCTGTTA 5'
225	Arabidopsis thaliana	GGAATCTTGATGATGCTGCAT	alignment	plot	GSM278335-4060	AT5G60120.2 cdna:known chromosome:TAIR10:5:24207689:24211743:1 gene:AT5G60120 transcript:AT5G60120.2	0	1821	0	23	11.5	1	5' GGAATCTTGATGATGCTGCAT 3' o\|\|\|\|\|o\|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' TCACTCTTAGGACTACTACGACGTAAACTTTT 5'
226	Arabidopsis thaliana	TCTATCTTCTTCGTCTTCGAT	alignment	plot	GSM278335-4060	AT1G77122.1 cdna:known chromosome:TAIR10:1:28977357:28978743:-1 gene:AT1G77122 transcript:AT1G77122.1	2	321	0.02	4	0.00569801	2.5	5' TCTATCTTCTTCGTCTTCGAT 3' \|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|o\|\| 3' AAGAAGA-AGAAGAAGAAGAAGTTACTAGTTG 5'
227	Arabidopsis thaliana	TAACTATTTTGAGAAGAAGTG	alignment	plot	GSM278335-4060	AT3G20720.1 cdna:known chromosome:TAIR10:3:7239908:7247005:1 gene:AT3G20720 transcript:AT3G20720.1	2	1462	0.01	2	1	2.5	5' TAACTAT-TTTGAGAAGAAGTG 3' \|\|\|\|\| \| \|\|\|\|\|\|\|\|o\|\|\|\|\| 3' CCTATTGACAGAAACTCTTTTTCACACCCCCA 5'
228	Arabidopsis thaliana	TTGGACTGAAGGGAGCTCC	alignment	plot	GSM278335-4060	AT1G30210.1 cdna:known chromosome:TAIR10:1:10627185:10630538:-1 gene:AT1G30210 transcript:AT1G30210.1	2	1142	0.02	4	2	2.5	5' TTGGACTGAAGGGAGCTCC 3' \|\|\|\|\|\|\|\|\|\|\|\|\| \|o\|\| 3' ACTTAACCTGACTTCCCAGGGGGATGATGACA 5'
229	Arabidopsis thaliana	TTGGACTGAAGGGAGCTCCCT	alignment	plot	GSM278335-4060	AT1G30210.1 cdna:known chromosome:TAIR10:1:10627185:10630538:-1 gene:AT1G30210 transcript:AT1G30210.1	2	1142	0	4	2	3	5' TTGGACTGAAGGGAGCTCCCT 3' \|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\| 3' ACTTAACCTGACTTCCCAGG-GGGATGATGAC 5'
230	Arabidopsis thaliana	TGCCAAAGGAGATTTGCCTCG	alignment	plot	GSM278335-4060	AT2G33770.1 cdna:known chromosome:TAIR10:2:14277558:14283040:-1 gene:AT2G33770 transcript:AT2G33770.1	2	751	0.01	2	2	3	5' TGCCAAAGGAGATTTGCCTCG 3' \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|o o 3' GTTAACGGTTTCCTCTATACGGGATCTTACTC 5'
231	Arabidopsis thaliana	CTCGGGATGGTTCCTCGATG	alignment	plot	GSM278335-4060	AT1G24490.2 cdna:known chromosome:TAIR10:1:8682234:8685271:1 gene:AT1G24490 transcript:AT1G24490.2	2	310	0.03	2	1	3	5' CTCGGGATGGTTCCTCGATG 3' \|\|\|\|\| \|\|\|\|\| \|\|\| \|\|\|\| 3' CTAAGAGCCGTACCA-GGAACTACTTTAGTTT 5'
232	Arabidopsis thaliana	TAACGCACAACACTAAGCCAT	alignment	plot	GSM278335-4060	AT3G19890.1 cdna:known chromosome:TAIR10:3:6914910:6916142:-1 gene:AT3G19890 transcript:AT3G19890.1	1	322	0	2	2	1.5	5' TAACGCACAACACTAAGCCAT 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|o\|\|\|\| 3' GAACCTTGCGTGTTGTGATTTGGTAGCGTAAC 5'
233	Arabidopsis thaliana	TCCGGAGGGATTCCTTCCTT	alignment	plot	GSM278335-4060	AT3G52590.1 cdna:known chromosome:TAIR10:3:19505629:19506932:1 gene:AT3G52590 transcript:AT3G52590.1	2	146	0	4	4	1	5' TCCGGAGGGATTCCTTCCTT 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| 3' GACTAGGCCTCCCTAAGGAAGAAACAGAACCT 5'
234	Arabidopsis thaliana	TGGAGCCATGGTGGGAGCTG	alignment	plot	GSM278335-4060	AT5G08000.1 cdna:known chromosome:TAIR10:5:2563554:2565491:1 gene:AT5G08000 transcript:AT5G08000.1	0	130	0	153	153	4	5' TGGAGCCATGGTGGGAGCTG 3' \|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \| 3' GGTCTCCTCGGTACCAACCTCAAGTCTCTATG 5'
235	Arabidopsis thaliana	TGCTCGATTGTCTGGTTGAG	alignment	plot	GSM278335-4060	AT4G15410.1 cdna:known chromosome:TAIR10:4:8814801:8816805:1 gene:AT4G15410 transcript:AT4G15410.1	1	1284	0.04	21	21	4	5' TGCTCGATTGTCTGGTTGAG 3' \|\|\|\|\|\|\|\| \|\| \|\|\|\|o \|o 3' TCGAACGAGCTACCAAACCAGGTTAAGACAGT 5'
236	Arabidopsis thaliana	TCATCATCATCATCATCTTCT	alignment	plot	GSM278335-4060	AT5G08600.1 cdna:known chromosome:TAIR10:5:2786267:2789871:1 gene:AT5G08600 transcript:AT5G08600.1	2	330	0	19	0.0576299	0	5' TCATCATCATCATCATCTTCT 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' TAGTAGTAGTAGTAGTAGTAGAAGACTGAGGT 5'
237	Arabidopsis thaliana	TCATCTTCATCATCATCATCT	alignment	plot	GSM278335-4060	AT2G21420.1 cdna:known chromosome:TAIR10:2:9169713:9171746:1 gene:AT2G21420 transcript:AT2G21420.1	0	1184	0.02	60	2.85714	2	5' TCATCTTCATCATCATCATCT 3' \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' TAGTAGTAGTAGTAGTAGTAGTAGTAGCGTTG 5'
238	Arabidopsis thaliana	CTATCATCATCATCCTCGTAA	alignment	plot	GSM278335-4060	AT2G21420.1 cdna:known chromosome:TAIR10:2:9169713:9171746:1 gene:AT2G21420 transcript:AT2G21420.1	0	1184	0.03	60	2.85714	3.5	5' CTATCATCATCATCCTCGTAA 3' \| \|\|\|\|\|\|\|\|\|\|\|\| \|\|o\| \| 3' AGTAG-TAGTAGTAGTAGTAGTAGTAGCGTTG 5'
239	Arabidopsis thaliana	TGCTCGATTGTCTGGTTGAG	alignment	plot	GSM278335-4060	AT3G28830.1 cdna:known chromosome:TAIR10:3:10831168:10833284:1 gene:AT3G28830 transcript:AT3G28830.1	2	1540	0.04	11	11	3	5' TGCTCGATTGTCTGGTTGAG 3' \|\| \| \|\|\|\|\|\|\|\|\| \|\|\|\|\| 3' GTGAACCA-CTAACAGACGAACTCGAGACTGA 5'
240	Arabidopsis thaliana	CTATCATCATCATCCTCGTAA	alignment	plot	GSM278335-4060	AT5G63740.1 cdna:known chromosome:TAIR10:5:25510776:25511456:-1 gene:AT5G63740 transcript:AT5G63740.1	2	272	0.02	19	0.0576299	3	5' CTATCATCATCATCCTCGTAA 3' \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' AGTAG-TAGTAGTAGTAGGAGCAGGAGCAGGA 5'
241	Arabidopsis thaliana	GTGAGTTTAGGGTTCTTGAA	alignment	plot	GSM278335-4060	AT5G48810.1 cdna:known chromosome:TAIR10:5:19789067:19790334:-1 gene:AT5G48810 transcript:AT5G48810.1	0	77	0.01	17	17	4	5' GTGAGTTTAGGGTTCTTGAA 3' \|\|\|\|\|\|\|\| \|\|o\| \|\|\|o \| 3' TAGACACTCAAACCCTA-GAATGTGGTTGGCG 5'
242	Arabidopsis thaliana	TCATCATCATCATCATCTTCC	alignment	plot	GSM278335-4060	AT5G63740.1 cdna:known chromosome:TAIR10:5:25510776:25511456:-1 gene:AT5G63740 transcript:AT5G63740.1	2	278	0.03	19	0.0576299	1	5' TCATCATCATCATCATCTTCC 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| 3' TAGTAGTAGTAGTAGTAGTAGTAGGAGCAGGA 5'
243	Arabidopsis thaliana	GTGAGTTTAGGGTTCTTGAA	alignment	plot	GSM278335-4060	AT3G52230.1 cdna:known chromosome:TAIR10:3:19371213:19372687:1 gene:AT3G52230 transcript:AT3G52230.1	2	81	0	4	4	2	5' GTGAGTTTAGGGTTCTTGAA 3' \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| 3' CTAAAACTCAAATCCCAA-AACTTAACTTAGC 5'
244	Arabidopsis thaliana	CTATCATCATCATCCTCGTAA	alignment	plot	GSM278335-4060	AT2G21420.1 cdna:known chromosome:TAIR10:2:9169713:9171746:1 gene:AT2G21420 transcript:AT2G21420.1	2	1178	0	19	0.0576299	2.5	5' CTATCATCATCATCCTCGTAA 3' \| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|o\|\| 3' AGTAG-TAGTAGTAGTAGTAGCGTTGGTCCTC 5'
245	Arabidopsis thaliana	AACGGCGTGAGTGCCGTAGA	alignment	plot	GSM278335-4060	AT1G80950.1 cdna:known chromosome:TAIR10:1:30412544:30415113:-1 gene:AT1G80950 transcript:AT1G80950.1	1	462	0	6	6	4	5' AACGGCGTGAGTGCCGTAGA 3' \|\|\|o\|\|\|\|o\|o\|o\|\| \|\| \| 3' TCTTTTGTCGCATTTATGGGATGTTTAGTTCA 5'
246	Arabidopsis thaliana	TCTATCTTCTTCGTCTTCGAT	alignment	plot	GSM278335-4060	AT2G44310.1 cdna:known chromosome:TAIR10:2:18309212:18309826:1 gene:AT2G44310 transcript:AT2G44310.1	2	369	0.05	6	6	3	5' TCTATCTTCTTCGTCTTCGAT 3' \| \|\|\|\|\|\|\|\|\|o\|\|\|o\|\|\|\| 3' TTCGTGCTAGAAGAAGTAGAGGCTAGATTTGA 5'
247	Arabidopsis thaliana	CTCTGCCAAAGGAGATTTGC	alignment	plot	GSM278335-4060	AT4G09730.1 cdna:known chromosome:TAIR10:4:6136249:6139711:1 gene:AT4G09730 transcript:AT4G09730.1	2	1932	0.05	3	3	3	5' CTCTGCCAAAGGAGATTTGC 3' \|\| \|\|\|\| \|\|\|o\|\|\|o\|\|\|\| 3' CCGAGA-ACGGCTTCTTCTGAACGGGGCCTTT 5'
248	Arabidopsis thaliana	TTCCACAGCTTTCTTGAACTT	alignment	plot	GSM278335-4060	AT2G45480.1 cdna:known chromosome:TAIR10:2:18745340:18747533:1 gene:AT2G45480 transcript:AT2G45480.1	0	525	0	9	9	2	5' TTCCAC-AGCTTTCTTGAACTT 3' \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \| 3' TCTAAGGTGTTCGAAAGAACTTGCAAATGCTG 5'
249	Arabidopsis thaliana	TAGTCCGGTTTTGGATACGTG	alignment	plot	GSM278335-4060	AT1G42970.1 cdna:known chromosome:TAIR10:1:16127381:16129843:1 gene:AT1G42970 transcript:AT1G42970.1	2	1585	0.05	29	29	4	5' TAGTCCGGTTTTGGATACGTG 3' \|\|\|\| \|\|o\|\|\|o\|o\|\|\| \|\|o 3' ACGTATCATGCTAAAGCTTATTCATTGAGTAC 5'
250	Arabidopsis thaliana	TTGAAGAGGACTTGGAACTTCGAT	alignment	plot	GSM278335-4060	AT2G47940.1 cdna:known chromosome:TAIR10:2:19617986:19622232:-1 gene:AT2G47940 transcript:AT2G47940.1	2	290	0.02	5	2.5	4	5' TTGAAGAGGACTTGGAACTTCGAT 3' \|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\| 3' AAAAAACTCCTCCT-AACCTTGAAAGTAGAGC 5'
251	Arabidopsis thaliana	GATGATGATGATACTCAGGA	alignment	plot	GSM278335-4060	AT3G25013.1 cdna:known chromosome:TAIR10:3:9113875:9116188:1 gene:AT3G25013 transcript:AT3G25013.1	1	289	0.01	2	2	2.5	5' GATGATGATGATACTCAGGA 3' \|\| \|\|\|\|\|\|\|\|\|\|\|o \|\|\|\| 3' TCTCCTTCTACTACTATGGTTCCTGATACTCG 5'
252	Arabidopsis thaliana	AGGTCTTGGGTTCGAGGAAC	alignment	plot	GSM278335-4060	AT3G59150.1 cdna:known chromosome:TAIR10:3:21872706:21874735:1 gene:AT3G59150 transcript:AT3G59150.1	0	1782	0.01	6	6	4	5' AGGTCTTGGGTTCGAGGAAC 3' \|\|\|\| \|\|\|o\|\|o\|\|\|\| \|\| 3' TGGCTCCA-AACTCAGGCTCGGTGTATACGGT 5'
253	Arabidopsis thaliana	TTGACAGAAGATAGAGAGCAC	alignment	plot	GSM278335-4060	AT2G42200.1 cdna:known chromosome:TAIR10:2:17587407:17589630:1 gene:AT2G42200 transcript:AT2G42200.1	2	948	0	3	3	1	5' TTGACAGAAGATAGAGAGCAC 3' \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| 3' CCTAAACTGTCTTCTCTCTCTCGTGTCAAACT 5'
254	Arabidopsis thaliana	TGATGCTAGCCGTGAAGGAGAAAA	alignment	plot	GSM278335-4060	AT3G26190.1 cdna:known chromosome:TAIR10:3:9583465:9585109:-1 gene:AT3G26190 transcript:AT3G26190.1	1	552	0	4	2	4	5' TGATGCTAGCCGTGAAGGAGAAAA 3' o\|\|\|o\|\|\|\|\| \|\|o \|o\|\|\|\|\|\|\| 3' GTATGCTATGATCGCCATATTCTCTTTTCTCG 5'
255	Arabidopsis thaliana	ACTCAGCCAGGGGGTCGAGTG	alignment	plot	GSM278335-4060	AT1G70730.1 cdna:known chromosome:TAIR10:1:26668865:26672779:-1 gene:AT1G70730 transcript:AT1G70730.1	2	1737	0.03	5	1.66667	4	5' ACTCAGCCAGGGGGTCGAGTG 3' \| \|\|\|o\|\|\|\|\|\|\|oo\|o\|\| \| 3' GTTGT-AGTTGGTCCCCTGGTTCTCGTAGGAC 5'
256	Arabidopsis thaliana	TATTCGACCCCCAGGTCGAG	alignment	plot	GSM278335-4060	AT2G44060.2 cdna:known chromosome:TAIR10:2:18226319:18228151:1 gene:AT2G44060 transcript:AT2G44060.2	2	753	0.05	26	13	3.5	5' TATTCGACCCCCAGGTCGAG 3' o\|\|\| \|\| \|\|\|\|\|o\|\|\|\|\|o 3' TTCAGTAA-CTCGGGGTTCAGCTTTAGTAAGT 5'
257	Arabidopsis thaliana	CTGGTTTAGTCACTTTCACTG	alignment	plot	GSM278335-4060	AT1G47128.1 cdna:known chromosome:TAIR10:1:17282825:17285670:-1 gene:AT1G47128 transcript:AT1G47128.1	2	577	0.03	4	4	3	5' CTGGTTTAGTCACTTTCACTG 3' \|\|\|\|\|\|\|\| \|\| \|o\|o\|\|\|\|\| 3' GCTAGACCAAATAAG-GGAGGTGACGAGGTTA 5'
258	Arabidopsis thaliana	CTATCATCATCATCCTCGTAA	alignment	plot	GSM278335-4060	AT1G49900.1 cdna:known chromosome:TAIR10:1:18473908:18477643:-1 gene:AT1G49900 transcript:AT1G49900.1	2	1964	0.02	19	0.0576299	2.5	5' CTATCATCATCATCCTCGTAA 3' \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|o\| \| 3' AGTAG-TAGTAGTAGTAGGAGTAGTGGTAGTA 5'
259	Arabidopsis thaliana	CTATCATCATCATCCTCGTAA	alignment	plot	GSM278335-4060	AT1G49900.1 cdna:known chromosome:TAIR10:1:18473908:18477643:-1 gene:AT1G49900 transcript:AT1G49900.1	2	1931	0.01	19	0.0576299	2.5	5' CTATCATCATCATCCTCGTAA 3' \| \|\|\|\|\|\|\|\|\|\|\|\| \|\|o\|\|\| 3' AGTAG-TAGTAGTAGTAGTAGTATTATTCTTG 5'
260	Arabidopsis thaliana	AAGCTCAGGAGGGATAGCGCC	alignment	plot	GSM278335-4060	AT5G57735.1 cdna:known chromosome:TAIR10:5:23394005:23394500:1 gene:AT5G57735 transcript:AT5G57735.1	1	429	0	20	20	3	5' AAGCTCAGGAGGGATAGCGCC 3' \|\|\|\|\|\|\|\|\|\|\|\|o\|\|\|\| o \| 3' GTATTTCGAGTCCTCCTTATCTTTGTTGTTTG 5'
261	Arabidopsis thaliana	CATCCAAGGTGTTTGTAGAAA	alignment	plot	GSM278335-4060	AT1G09750.1 cdna:known chromosome:TAIR10:1:3157501:3159148:1 gene:AT1G09750 transcript:AT1G09750.1	0	1494	0.01	41	41	4	5' CATCCAAGGTGTTTGTAGAAA 3' \|\|\| \|\|\|o\|\|o\| \|\|\|\|\|\|\| 3' GCAAGTATGTTTCATATACATCTTCCAGTTCG 5'
262	Arabidopsis thaliana	TGACAGAAGAAAGAGAGCAC	alignment	plot	GSM278335-4060	AT2G42200.1 cdna:known chromosome:TAIR10:2:17587407:17589630:1 gene:AT2G42200 transcript:AT2G42200.1	2	947	0	4	4	1	5' TGACAGAAGAAAGAGAGCAC 3' \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| 3' CTAAACTGTCTTCTCTCTCTCGTGTCAAACTC 5'
263	Arabidopsis thaliana	ATCCCTCGCAAATTTTGCGA	alignment	plot	GSM278335-4060	AT5G38480.1 cdna:known chromosome:TAIR10:5:15409697:15411516:1 gene:AT5G38480 transcript:AT5G38480.1	2	437	0.04	5	2.5	3.5	5' ATCCC-TCGCAAATTTTGCGA 3' \|\|\|\|\| \|\|o\|\| \|\|\|\|\|\|\| \| 3' TTTTAGGGTAGTGTCTAAAACGATTCGAGCCT 5'
264	Arabidopsis thaliana	ATGTGCCCATCTTCACCATC	alignment	plot	GSM278335-4060	AT1G63130.1 cdna:known chromosome:TAIR10:1:23412730:23415149:1 gene:AT1G63130 transcript:AT1G63130.1	2	662	0	2	2	3	5' ATGTGCCCATCTTCACCATC 3' \|\|o\| \|\|\|\|\| \|o\|\|\|\|\|\|\| 3' CGACTATA-GGGTAAAGGTGGTAGACTGGTTG 5'
265	Arabidopsis thaliana	TGCTCGATTGTCTGGTTGAG	alignment	plot	GSM278335-4060	AT5G23820.1 cdna:known chromosome:TAIR10:5:8031268:8033020:1 gene:AT5G23820 transcript:AT5G23820.1	0	758	0.02	23	23	4	5' TGCTCGATTGTCTGGTTGAG 3' \|\|\|\|\|\|\|\|\|\| \|\| \|\|\| \| 3' CTGTACGAGCTAAC-GAACAAGTATAGCGATA 5'
266	Arabidopsis thaliana	TTCCACAGCTTTCTTGAACTT	alignment	plot	GSM278335-4060	AT5G66420.1 cdna:known chromosome:TAIR10:5:26521674:26525029:-1 gene:AT5G66420 transcript:AT5G66420.1	2	1737	0.04	5	2.5	3	5' TTCCA-CAGCTTTCTTGAACTT 3' \|o\|\|\| \|\|\|\|\|\|o\|\|oo\|\|\|\|\| 3' GTTAGGGTGGTCGAAGGAGTTTGAAACGTCTA 5'
267	Arabidopsis thaliana	TGGAGCCATGGTGGGAGCTG	alignment	plot	GSM278335-4060	AT5G14380.1 cdna:known chromosome:TAIR10:5:4635797:4636676:-1 gene:AT5G14380 transcript:AT5G14380.1	2	295	0	9	9	2	5' TGGAGCCATGGTGGGAGCTG 3' \|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\| 3' GCCGACCTCGGAACCAACCTCGACTTCCTCGG 5'
268	Arabidopsis thaliana	TGATTGAGCCGTGTCAATATC	alignment	plot	GSM278335-4060	AT4G00150.1 cdna:known chromosome:TAIR10:4:57199:59286:-1 gene:AT4G00150 transcript:AT4G00150.1	0	867	0.01	90	90	1	5' TGATTGAGCCGTGTCAATATC 3' \|\|\|\|\|\|\|\|\|\|\|o\|o\|\|\|\|\|\|\| 3' GACAACTAACTCGGCGCGGTTATAGGGGACTC 5'
269	Arabidopsis thaliana	TAGAAGGGAGTGAGTTCTCG	alignment	plot	GSM278335-4060	AT5G38660.1 cdna:known chromosome:TAIR10:5:15473109:15475552:-1 gene:AT5G38660 transcript:AT5G38660.1	2	801	0.03	13	6.5	3	5' TAGAAGGGAGTGAGTTCTCG 3' \|\|\|\|\|\|o\|\|\|\|\|o\|\| \|\|\| 3' AGGTTTCTTCCTTCACTTAA-AGCGGACAGAA 5'
270	Arabidopsis thaliana	TCTTCTTCGATCGGTTCTGA	alignment	plot	GSM278335-4060	AT2G19450.1 cdna:known chromosome:TAIR10:2:8426206:8429736:1 gene:AT2G19450 transcript:AT2G19450.1	0	1900	0.01	25	25	3	5' TCTTCTTCGATCGGTTCTGA 3' \|\|\|\|\|\|\|\|o\|\| \|\|\|\| \|o\| 3' GAAAAGAAGAAGTTA-CCAATATTGTGATAAA 5'
271	Arabidopsis thaliana	TGCTCGTCTTCGCCGGTTAGG	alignment	plot	GSM278335-4060	AT1G15370.1 cdna:known chromosome:TAIR10:1:5287047:5288577:1 gene:AT1G15370 transcript:AT1G15370.1	2	312	0.02	3	3	4	5' TGCTCGTCTTCGCCGGTTAGG 3' \|o\|\|\|\|\|\|\|\| \|\|\|ooo \|\|\| 3' TAGTATGAGCAGAAACGGTTGTTCCTTCTACG 5'
272	Arabidopsis thaliana	TAGGATCAAGATGGGGATGA	alignment	plot	GSM278335-4060	AT3G21350.2 cdna:known chromosome:TAIR10:3:7517070:7518744:1 gene:AT3G21350 transcript:AT3G21350.2	2	181	0.04	3	1.5	3	5' TAGGATCAAGATGGGGATGA 3' \|\| \|\|\|\|\|\|\|\| \|\|\| \|\|\|\| 3' ATCAATGCTAGTTCT-CCCATACTTAACTAGG 5'
273	Arabidopsis thaliana	TGAGAAGAAGAAGAAGAAAA	alignment	plot	GSM278335-4060	AT3G15140.1 cdna:known chromosome:TAIR10:3:5099532:5101781:-1 gene:AT3G15140 transcript:AT3G15140.1	2	234	0.05	30	0.0472016	1.5	5' TGAGAAGAAGAAGAAGAAAA 3' o\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' TCTTCTTCTTCTTCTTCTTCTTTTCAGTCTCC 5'
274	Arabidopsis thaliana	AGAGATACGACGGAGATGGA	alignment	plot	GSM278335-4060	AT1G54140.1 cdna:known chromosome:TAIR10:1:20213967:20215223:-1 gene:AT1G54140 transcript:AT1G54140.1	0	42	0	7	7	3.5	5' AGAGATACGACGGAGATGGA 3' \|\|\|o\|o\|\|\|\|\|\|\|\|\|\| \|o 3' ACCGTCTTTGTGCTGCCTCT-CTAACTACTTG 5'
275	Arabidopsis thaliana	TTCCACAGCTTTCTTGAACTG	alignment	plot	GSM278335-4060	AT5G50460.1 cdna:known chromosome:TAIR10:5:20551437:20552566:-1 gene:AT5G50460 transcript:AT5G50460.1	0	467	0.02	29	29	4	5' TTCCACAGCTTTCTTGAACTG 3' \|\|\|\|\|\|\|\|\|\|\| \|\|o\|\| \|o 3' GCTTTAGGTGTCGAAA-AATTTAATCAAACGA 5'
276	Arabidopsis thaliana	TGACAGAAGAGAGTTAGCAC	alignment	plot	GSM278335-4060	AT2G33810.1 cdna:known chromosome:TAIR10:2:14305001:14306072:1 gene:AT2G33810 transcript:AT2G33810.1	2	797	0.01	12	12	2	5' TGACAGAAGAGAGTTAGCAC 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| 3' TCTGACTGTCTTCTCTCATTCGTTTCGGACAA 5'
277	Arabidopsis thaliana	TCGAACCCGAACCTGAACCGA	alignment	plot	GSM278335-4060	AT3G27200.1 cdna:known chromosome:TAIR10:3:10043522:10044373:-1 gene:AT3G27200 transcript:AT3G27200.1	2	460	0.01	3	3	3.5	5' TCGAACCCGAACCTGAA-CCGA 3' o \|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\| 3' CTAGGTCTTGGGCTGGGACTTAGGCTTGGGCT 5'
278	Arabidopsis thaliana	CGGACCCGAAACCTGACCCG	alignment	plot	GSM278335-4060	AT3G27200.1 cdna:known chromosome:TAIR10:3:10043522:10044373:-1 gene:AT3G27200 transcript:AT3G27200.1	2	441	0.01	3	3	3.5	5' CGGACCCGAAACCTGACCCG 3' \|\|o\|\|\|\|\|\|\| \|\|\|\|\| \|\| 3' TTAGGCTTGGGCTT-GGACTTGGACTTCCTCT 5'
279	Arabidopsis thaliana	TGACAGAAGATAGAGAGCAC	alignment	plot	GSM278335-4060	AT3G49780.1 cdna:known chromosome:TAIR10:3:18465679:18466376:1 gene:AT3G49780 transcript:AT3G49780.1	1	377	0.04	8	8	4	5' TGACAGAAGATAGAGAGCAC 3' o\|\|\|\|\|\|o\|o\|\|\|o\|\| \|\| 3' TCTGCTTGTCTTTTGTCTTTCATGATGTCACT 5'
280	Arabidopsis thaliana	TGCCTGGCTCCCTGTATGCC	alignment	plot	GSM278335-4060	AT1G77850.1 cdna:known chromosome:TAIR10:1:29272313:29275419:1 gene:AT1G77850 transcript:AT1G77850.1	0	1420	0	445	445	0.5	5' TGCCTGGCTCCCTGTATGCC 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\|o\|\|\|\|\| 3' TATAACGGACCGAGGGACGTACGGTCGTCCTT 5'
281	Arabidopsis thaliana	TCAATGCATTGAAAGTGACTA	alignment	plot	GSM278335-4060	AT5G41170.1 cdna:known chromosome:TAIR10:5:16478486:16480584:-1 gene:AT5G41170 transcript:AT5G41170.1	1	892	0	4	1	1	5' TCAATGCATTGAAAGTGACTA 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| 3' AGCTAGTTACGTAACTTTCACTAATGTAGTCC 5'
282	Arabidopsis thaliana	GCTACCGCAGCCGCTGCCGCA	alignment	plot	GSM278335-4060	AT2G27900.2 cdna:known chromosome:TAIR10:2:11877430:11886013:1 gene:AT2G27900 transcript:AT2G27900.2	2	508	0	5	2.5	2	5' GCTACCGCAGCCGCTGCCGCA 3' \|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| 3' TGCTCGTTGGCGTCGTCGACGGCGTCGTGCAC 5'
283	Arabidopsis thaliana	TGACAGAAGAAAGAGAGCAC	alignment	plot	GSM278335-4060	AT3G57920.1 cdna:known chromosome:TAIR10:3:21444321:21446035:-1 gene:AT3G57920 transcript:AT3G57920.1	2	855	0	3	3	1	5' TGACAGAAGAAAGAGAGCAC 3' \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| 3' TCAAACTGTCTTCTCTCTCTCGTGTCGAACTT 5'
284	Arabidopsis thaliana	GGAATCTTGATGATGCTGCAT	alignment	plot	GSM278335-4060	AT3G54990.1 cdna:known chromosome:TAIR10:3:20373718:20376522:-1 gene:AT3G54990 transcript:AT3G54990.1	0	976	0	5	5	1.5	5' GGAATCTTGATGATGCTGCAT 3' \|\|\|\|\|\|o\|\|\|\|\|\|\|\|\|\|\|\|\| 3' TTTCCCTTAGGACTACTACGACGTTGACAGAA 5'
285	Arabidopsis thaliana	TCGATAAACCTCTGCATCCAG	alignment	plot	GSM278335-4060	AT1G01040.1 cdna:known chromosome:TAIR10:1:23146:31227:1 gene:AT1G01040 transcript:AT1G01040.1	2	3433	0	3	3	1	5' TCGATAA-ACCTCTGCATCCAG 3' \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' TGTAGCTATTATGGAGACGTAGGTCGAGTAAC 5'
286	Arabidopsis thaliana	ATGATGCGCAAATGCGGATA	alignment	plot	GSM278335-4060	AT5G04853.1 cdna:known chromosome:TAIR10:5:1410527:1410703:-1 gene:AT5G04853 transcript:AT5G04853.1	0	102	0.01	9	9	4	5' ATGATGCGCAAATGCGGATA 3' \|o\|\|\| \|o\|\|\|\|\|\|\|oo\|\| 3' GTGGTGCTA-GTGTTTACGTTTACGGCGGTAC 5'
287	Arabidopsis thaliana	AGATGGACGAGTGCAAGAATT	alignment	plot	GSM278335-4060	AT5G17630.1 cdna:known chromosome:TAIR10:5:5809334:5810962:1 gene:AT5G17630 transcript:AT5G17630.1	0	1558	0.04	17	17	4	5' AGATGGACGAGTGCAAGAATT 3' \|\| \|o\|\|\|\|\|\| \|\|\|\|\|\|o\| 3' TAGTTC-ATCTGCTCCAGTTCTTGATTCATCT 5'
288	Arabidopsis thaliana	CTGGGTTGTGATGTTCTGCA	alignment	plot	GSM278335-4060	AT1G55020.1 cdna:known chromosome:TAIR10:1:20525708:20530273:1 gene:AT1G55020 transcript:AT1G55020.1	2	2367	0.04	2	2	3	5' CTGGGTTGTGATGTTCTGCA 3' \|\|\|o\|o\|\|\|\|\|\|\| \|\|\| \|\| 3' CTTCGACTCGACACTACCAGAAGTTTTTGTGA 5'
289	Arabidopsis thaliana	TACCATCTCTTGAGGAACTTGG	alignment	plot	GSM278335-4060	AT1G07920.1 cdna:known chromosome:TAIR10:1:2454846:2457321:1 gene:AT1G07920 transcript:AT1G07920.1	2	1261	0.01	18	3.6	3	5' TACCATCTCTTGAGGAACTTGG 3' o\|\|\|\|\| \|\|\|\| \|o\|\|\|\|\|\|\|\| 3' CGTAGTGGTA-AGAAGTTCTTGAACCCGAGGA 5'
290	Arabidopsis thaliana	TGACAGAAGAAAGAGAGCAC	alignment	plot	GSM278335-4060	AT5G38610.1 cdna:known chromosome:TAIR10:5:15460691:15461459:-1 gene:AT5G38610 transcript:AT5G38610.1	2	589	0.01	4	4	2	5' TGACAGAAGAAAGAGAGCAC 3' \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| 3' CTACACTGTCTTCTT-CTCTCGTATAACTTAT 5'
291	Arabidopsis thaliana	TGACAGAAGATAGAGAGCAC	alignment	plot	GSM278335-4060	AT5G38610.1 cdna:known chromosome:TAIR10:5:15460691:15461459:-1 gene:AT5G38610 transcript:AT5G38610.1	2	589	0	4	4	2	5' TGACAGAAGATAGAGAGCAC 3' \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| 3' CTACACTGTCTTCT-TCTCTCGTATAACTTAT 5'
292	Arabidopsis thaliana	TGAGAAGAAGAAGAAGAAAA	alignment	plot	GSM278335-4060	AT3G25150.2 cdna:known chromosome:TAIR10:3:9157078:9160100:-1 gene:AT3G25150 transcript:AT3G25150.2	2	101	0.02	6	3	1.5	5' TGAGAAGAAGAAGAAGAAAA 3' \|\| \|\|\|\|\|\|\|\|\|\|\|\|o\|\|\|\| 3' TTTTAC-CTTCTTCTTCTTTTTTTTCACCGAA 5'
293	Arabidopsis thaliana	TTGGACTGAAGGGAGCTCCTT	alignment	plot	GSM278335-4060	AT1G53230.1 cdna:known chromosome:TAIR10:1:19849788:19851725:-1 gene:AT1G53230 transcript:AT1G53230.1	2	1195	0.02	8	8	3.5	5' TTGGACTGAAGGGAGCTCCTT 3' \|\|\|\|\|\|\|\|\|\|\|\| o\|o\|\|\|o 3' CAATTACCTGACTTCCCCTGGGGAGACACTAT 5'
294	Arabidopsis thaliana	ACTCGACCTCGAGGTCGAGTG	alignment	plot	GSM278335-4060	AT5G06330.1 cdna:known chromosome:TAIR10:5:1934739:1935644:-1 gene:AT5G06330 transcript:AT5G06330.1	1	532	0.01	2	2	4	5' ACTCGACC-TCGAGGTCGAGTG 3' \|\|\|\|\|\|\|\| \|\|\|\|\|o\| o\|\|oo 3' GCTTGAGCTGGCAGCTCTACTTCGTAGTTGTA 5'
295	Arabidopsis thaliana	AGAGAAACCCAACAGCATCAT	alignment	plot	GSM278335-4060	AT1G69160.1 cdna:known chromosome:TAIR10:1:26000214:26001588:1 gene:AT1G69160 transcript:AT1G69160.1	0	1181	0.04	12	12	4	5' AGAGAAACCCAACAGCATCAT 3' o\|\|\|\|\|\|\|\|\|\| \|o\|\|\| \|\| 3' TTAGGTTCTTTGGGTTTTTGTA-TATTGAATA 5'
296	Arabidopsis thaliana	TCGGACCAGGCTTCATTCCCC	alignment	plot	GSM278335-4060	AT1G30490.1 cdna:known chromosome:TAIR10:1:10796135:10800961:-1 gene:AT1G30490 transcript:AT1G30490.1	2	806	0	54	31.5	2.5	5' TCGGACCAGGCTTCATTCCCC 3' o\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| 3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5'
297	Arabidopsis thaliana	TCGGACCAGGCTTCATCCCCC	alignment	plot	GSM278335-4060	AT1G30490.1 cdna:known chromosome:TAIR10:1:10796135:10800961:-1 gene:AT1G30490 transcript:AT1G30490.1	2	806	0	54	31.5	2.5	5' TCGGACCAGGCTTCATCCCCC 3' o\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAGAC 5'
298	Arabidopsis thaliana	GAGGAGGAGGAGCACCACCGT	alignment	plot	GSM278335-4060	AT3G56340.1 cdna:known chromosome:TAIR10:3:20892129:20893443:-1 gene:AT3G56340 transcript:AT3G56340.1	2	473	0.01	6	6	3	5' GAGGAGGAGGAGCACCACCGT 3' \|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\| 3' GCTCCTCGTCGTCCTCGTGGTGGCCGTCCCGC 5'
299	Arabidopsis thaliana	TCGACCTGGTTGTCGAGTGGT	alignment	plot	GSM278335-4060	AT5G39030.1 cdna:known chromosome:TAIR10:5:15620066:15622486:1 gene:AT5G39030 transcript:AT5G39030.1	2	119	0.04	3	3	3.5	5' TCGACC-TGGTTGTCGAGTGGT 3' \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|o \|\| 3' TCAAGCTGGCACCAACAGCTTCCCCTGTAGCC 5'
300	Arabidopsis thaliana	GAGGTTTGCGATGAGAAAGAG	alignment	plot	GSM278335-4060	AT5G48790.1 cdna:known chromosome:TAIR10:5:19779860:19782050:-1 gene:AT5G48790 transcript:AT5G48790.1	0	661	0.05	23	23	4	5' GAGGTTTGCGATGAGAAAGAG 3' \| \|\|\| \|\|\|\|\|oo\|\|\|\|\| \|\| 3' TATGC-CCATACGCTGTTCTTTGTCAAGCAGA 5'
301	Arabidopsis thaliana	TCCTCCACCACCGAGAGCAT	alignment	plot	GSM278335-4060	AT2G32690.2 cdna:known chromosome:TAIR10:2:13863717:13864596:-1 gene:AT2G32690 transcript:AT2G32690.2	2	585	0.05	25	6.25	3.5	5' TCCTCCACCACCGAGAGCAT 3' \|\|\|\|\|\|\|\|\|\|\|\| \|o \|\| \| 3' CTGGAGGAGGTGGTGG-TTACGGAAATGGTTT 5'
302	Arabidopsis thaliana	ATCGAAGGAGATGGAGGACG	alignment	plot	GSM278335-4060	AT1G70780.1 cdna:known chromosome:TAIR10:1:26695166:26696392:-1 gene:AT1G70780 transcript:AT1G70780.1	2	595	0.05	4	2	3	5' ATCGAAGGAGATGGAGGACG 3' \|\|\| \|\|\|o\|\|\| \|\|\|o\|\|\|\| 3' AGTCTAGGTTCTTCT-CCTTCTGCTGGAAGTG 5'
303	Arabidopsis thaliana	TCGGACCAGGCTTCATTCCCC	alignment	plot	GSM278335-4060	AT2G34710.1 cdna:known chromosome:TAIR10:2:14639323:14644273:-1 gene:AT2G34710 transcript:AT2G34710.1	2	881	0	55	32.5	2.5	5' TCGGACCAGGCTTCATTCCCC 3' o\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| 3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5'
304	Arabidopsis thaliana	TCGGACCAGGCTTCATCCCCC	alignment	plot	GSM278335-4060	AT2G34710.1 cdna:known chromosome:TAIR10:2:14639323:14644273:-1 gene:AT2G34710 transcript:AT2G34710.1	2	881	0	55	32.5	2.5	5' TCGGACCAGGCTTCATCCCCC 3' o\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAGAC 5'
305	Arabidopsis thaliana	GAGAAGATGAAGCTGTTCTG	alignment	plot	GSM278335-4060	AT3G56950.2 cdna:known chromosome:TAIR10:3:21078297:21079856:-1 gene:AT3G56950 transcript:AT3G56950.2	0	466	0.01	19	9.5	3.5	5' GAGAAGATGAAGCTGTTCTG 3' \|\|\|\|\|\|\|\|\|\|\|o\|\|\|o\| o 3' CTGCCTCTTCTACTTTGACGACTTCGGTGGCC 5'
306	Arabidopsis thaliana	TGAGAAGAAGAAGAAGAAAA	alignment	plot	GSM278335-4060	AT5G16020.1 cdna:known chromosome:TAIR10:5:5229692:5232241:1 gene:AT5G16020 transcript:AT5G16020.1	0	51	0.03	3	0.12	2.5	5' TGAGAAGAAGAAGAAGAAAA 3' o\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| 3' GCTTCTTCTTCTTCTTCTTCTTCTTCTTCCCA 5'
307	Arabidopsis thaliana	TCGGACCAGGCTTCATTCCCC	alignment	plot	GSM278335-4060	AT3G48610.1 cdna:known chromosome:TAIR10:3:18011545:18014082:-1 gene:AT3G48610 transcript:AT3G48610.1	2	1621	0.04	2	2	3.5	5' TCGG-ACCAGGCTTCATTCCCC 3' \|\|\|\| \|\|\|\|o\|\|\|\|\|\|\|\| \|\| 3' AATAGCCGTGGTTCGAAGTAACGGAGAAATGA 5'
308	Arabidopsis thaliana	GATGATGATGATACTCAGGA	alignment	plot	GSM278335-4060	AT2G42360.1 cdna:known chromosome:TAIR10:2:17640798:17641790:1 gene:AT2G42360 transcript:AT2G42360.1	1	238	0.02	6	6	4	5' GATGATGATGATA-CTCAGGA 3' \|\|o\|\|\|\|\| \|\|\|\| \|\|\| o\|\| 3' GCTTCTGCTACTCCTATTGAGGTCTATTTCTT 5'
309	Arabidopsis thaliana	GCGTACAGAGTAGTCAAGCAT	alignment	plot	GSM278335-4060	AT1G47670.1 cdna:known chromosome:TAIR10:1:17536667:17539538:-1 gene:AT1G47670 transcript:AT1G47670.1	2	1149	0	6	6	2.5	5' GCGTACAGAGTAGTCAAGCAT 3' \|\|o\|\|\|\|o\|\|o\|\| \|\|\|\|\|\|\| 3' CTTACGTATGTTTCGTC-GTTCGTATGGAGGA 5'
310	Arabidopsis thaliana	ACTCGACCACGAAGTCGAGT	alignment	plot	GSM278335-4060	AT4G01320.1 cdna:known chromosome:TAIR10:4:545796:549261:1 gene:AT4G01320 transcript:AT4G01320.1	2	506	0.02	13	13	3	5' ACTCGACCACGAA-GTCGAGT 3' \|\|\|\|\|\| \|\|\|\|\|\| \|\| \|\|\|\| 3' GCTCTGAGCTAGTGCTTTCAACTCATGTTTCT 5'
311	Arabidopsis thaliana	TGGATTGGTCAAGGGAAGCGT	alignment	plot	GSM278335-4060	AT5G23940.1 cdna:known chromosome:TAIR10:5:8076329:8079793:-1 gene:AT5G23940 transcript:AT5G23940.1	2	714	0.03	5	5	3	5' TGGATTGGTCAAGGGAAGCGT 3' \| \|\|\|o\|\|\|\|\|\|\|\|o\|\|\| \|\| 3' CGGAAGCTAGCCAGTTCCTTTC-CAACTCAGC 5'
312	Arabidopsis thaliana	GAGTCCACCGGAGCCACTCT	alignment	plot	GSM278335-4060	AT1G11850.2 cdna:known chromosome:TAIR10:1:3999202:3999876:1 gene:AT1G11850 transcript:AT1G11850.2	2	296	0.05	4	4	3.5	5' GAGTCCACCGGAGCCACTCT 3' \|\|\|\|\|\|\|\|\|\| o\|\|\|\| \|\| 3' GCTCCTCAGGTGGCGGTGGTG-GAGGCTCAGG 5'
313	Arabidopsis thaliana	GCAAGATGATCACTGTGGTC	alignment	plot	GSM278335-4060	AT1G77690.1 cdna:known chromosome:TAIR10:1:29200941:29203340:-1 gene:AT1G77690 transcript:AT1G77690.1	2	963	0.03	2	1	3.5	5' GCAAGATGATCACTGTGGTC 3' \|\|\| \|\| \|\|\|\|\|\|\|\|o\|\|\| 3' TACTCGTACTCCTAGTGACGCCATAGAGATTT 5'
314	Arabidopsis thaliana	TACTCGATCATGGGGTCGAGT	alignment	plot	GSM278335-4060	AT2G05990.1 cdna:known chromosome:TAIR10:2:2322258:2325146:1 gene:AT2G05990 transcript:AT2G05990.1	2	1131	0.04	3	1.5	3.5	5' TACTCGATCATGGGGTCGAGT 3' \|\|\|\|\|o\|\|\|\|\|\|\| \|\|\| \| \| 3' CCTTATGAGTTAGTACCACAGAT-ACTTGGGT 5'
315	Arabidopsis thaliana	TGATCTCTTCGTACTCTTCTTG	alignment	plot	GSM278335-4060	AT3G11120.1 cdna:known chromosome:TAIR10:3:3481052:3481448:1 gene:AT3G11120 transcript:AT3G11120.1	2	106	0.05	6	6	3.5	5' TGATCTCTTCGTACTCTTCTTG 3' \|o\|\|\|\|\|o\|\|o\|\|\| \|\|\|\|\|\| 3' AGAAATTAGAGGAGTATGCGAAGAAGAAGGTG 5'
316	Arabidopsis thaliana	TCATCATCATCATCATCTTCT	alignment	plot	GSM278335-4060	AT5G08600.2 cdna:novel chromosome:TAIR10:5:2786187:2790241:1 gene:AT5G08600 transcript:AT5G08600.2	2	449	0.01	19	0.0576299	0	5' TCATCATCATCATCATCTTCT 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' TAGTAGTAGTAGTAGTAGTAGAAGACTGAGGT 5'
317	Arabidopsis thaliana	TTCGCTTGCAGAGAGAAATCAC	alignment	plot	GSM278335-4060	AT2G39675.1 cdna:known chromosome:TAIR10:2:16537288:16538277:-1 gene:AT2G39675 transcript:AT2G39675.1	0	379	0	110	110	1.5	5' TTCGCTTGCAGAGAGAAATCAC 3' \|\|\|\|\|\|\|\| \|\|\|\|\|o\|\|\|\|\|\|\| 3' AGATAAGCGAACATCTCTTTTTAGTGTTGTTT 5'
318	Arabidopsis thaliana	ACTTGGCTGATTCTATTATT	alignment	plot	GSM278335-4060	AT3G03380.1 cdna:known chromosome:TAIR10:3:799615:808522:1 gene:AT3G03380 transcript:AT3G03380.1	2	2585	0.04	3	3	3	5' ACTTGGCTGATTCTAT-TATT 3' \|\|\|\|\|\|\|\|\|\|\|\| o\|\| \|\|o\| 3' TTCCTGAACCGACTAACGTATATGACCCTATG 5'
319	Arabidopsis thaliana	TCATCCTCATCATCATCGTCC	alignment	plot	GSM278335-4060	AT5G37420.1 cdna:known chromosome:TAIR10:5:14840143:14842070:1 gene:AT5G37420 transcript:AT5G37420.1	2	1664	0.05	19	0.0576299	2	5' TCATCCTCATCATCATCGTCC 3' \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\| 3' TAGTAGTAGTAGTAGTAGTAGC-GGTAGTAGT 5'
320	Arabidopsis thaliana	TGCCTGGCTCCCTGTATGCC	alignment	plot	GSM278335-4060	AT4G30080.1 cdna:known chromosome:TAIR10:4:14703201:14706336:-1 gene:AT4G30080 transcript:AT4G30080.1	0	1519	0	32	32	1.5	5' TGCCTGGCTCCCTGTATGCC 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| o\|\| 3' TAATACGGACCGAGGGACATTTGGGTGCCCTT 5'
321	Arabidopsis thaliana	GAGAGGAGAGAGTCTTTGTT	alignment	plot	GSM278335-4060	AT4G22670.1 cdna:known chromosome:TAIR10:4:11918080:11920910:1 gene:AT4G22670 transcript:AT4G22670.1	2	1610	0.04	9	9	2.5	5' GAGAGGAGAGAGTCTTTGTT 3' o\|\|\|\|o\|o\|\|\|\|\| \|\|\|\|\|\| 3' TTGCTTCTCTTTTCTCA-AAACAAGGACAATT 5'
322	Arabidopsis thaliana	TTGATGATGCTGCAGCTGCA	alignment	plot	GSM278335-4060	AT5G55230.1 cdna:known chromosome:TAIR10:5:22402028:22405492:1 gene:AT5G55230 transcript:AT5G55230.1	2	1881	0.03	5	2.5	3	5' TTGATGATGCTGCAGCTGCA 3' \|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\| 3' CTTGAACTACTA-GACGTCGTGGTCTTTGACC 5'
323	Arabidopsis thaliana	TGACAGAAGAAAGAGAGCAC	alignment	plot	GSM278370-4061	AT4G19150.1 cdna:known chromosome:TAIR10:4:10471331:10472742:-1 gene:AT4G19150 transcript:AT4G19150.1	0	1018	0.05	14	14	3.5	5' TGACAGAAGAAAGAGAGCAC 3' \| \|\|\|\|\|\| \|\|\|\|\|o\|\|\|\| 3' AGTAAATGTCTT-TTTCTTTCGTTATGTCTCT 5'
324	Arabidopsis thaliana	TTTGGATTGAAGGGAGCTCTT	alignment	plot	GSM278370-4061	AT5G06100.3 cdna:known chromosome:TAIR10:5:1837907:1840417:1 gene:AT5G06100 transcript:AT5G06100.3	0	1260	0	7	1.75	3.5	5' TTTGGATTGAAGGGAGCTCTT 3' \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|o 3' CTTATAACCTTACTTCCCTCGAGGTCGAAGTG 5'
325	Arabidopsis thaliana	TCGGCTTCAGCTCTTCCATC	alignment	plot	GSM278370-4061	AT5G22860.1 cdna:known chromosome:TAIR10:5:7639318:7642984:-1 gene:AT5G22860 transcript:AT5G22860.1	2	1122	0.05	2	1	3	5' TCGGCTTCAGCTCTTCCATC 3' \|\| \|\|\| \|\|\|\|\|\|\| \|\|\|\|\| 3' ATAGAG-CGACGTCGAGACGGTAGAGGTACGC 5'
326	Arabidopsis thaliana	TCGACCTCAAGGTCGAGTGA	alignment	plot	GSM278370-4061	AT1G75350.1 cdna:known chromosome:TAIR10:1:28272071:28272832:1 gene:AT1G75350 transcript:AT1G75350.1	2	387	0.02	40	40	3.5	5' TCGACC-TCAAGGTCGAGTGA 3' \|\|o\|\|\| \|\|\|\|o\|o\|\|\|oo\|\| 3' CGTAGTTGGTAGTTTCGGCTTGCTAAGGGCTC 5'
327	Arabidopsis thaliana	TGGGTTCGAGGAACGCCAAG	alignment	plot	GSM278370-4061	AT3G61470.1 cdna:known chromosome:TAIR10:3:22745653:22747282:1 gene:AT3G61470 transcript:AT3G61470.1	2	325	0.05	15	15	4	5' TGGGTTCGA-GGAACGCCAAG 3' o\|\|\|\|o\|\|\| \|o\|\| o\|\|\|\|\| 3' CAGGCCCAGGCTACTTTCTGGTTCTCCTAGTT 5'
328	Arabidopsis thaliana	TTTGCTTCCAGCTTTTGTCTC	alignment	plot	GSM278370-4061	AT1G35260.1 cdna:known chromosome:TAIR10:1:12936849:12937787:-1 gene:AT1G35260 transcript:AT1G35260.1	0	245	0.02	29	14.5	4	5' TTTGCTTCCAGCTTTTGTCTC 3' \| \|\|\|\|\|\|\|\|o\|\|\|\|\| o\| \| 3' TCTCATACGAAGGTTGAAAAGGG-GTGAGCGG 5'
329	Arabidopsis thaliana	TGACAGAAGAAAGAGAGCAC	alignment	plot	GSM278370-4061	AT1G27360.3 cdna:known chromosome:TAIR10:1:9501777:9503869:1 gene:AT1G27360 transcript:AT1G27360.3	0	1250	0	24	6	1	5' TGACAGAAGAAAGAGAGCAC 3' \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| 3' TCCAACTGTCTTCTCTCTCTCGTGCCACCTAT 5'
330	Arabidopsis thaliana	CACGTTGCAGATTCTTCATTA	alignment	plot	GSM278370-4061	AT3G15950.1 cdna:known chromosome:TAIR10:3:5397569:5402652:-1 gene:AT3G15950 transcript:AT3G15950.1	2	476	0.03	3	1.5	3.5	5' CACGTTGCAGATTCTTCATTA 3' \| \| \|\|\|\|\|\| \|\|\|\|\|\|\|\|o\| 3' TACAGAGGAACGTCGAAGAAGTAGTAGAAATC 5'
331	Arabidopsis thaliana	TTCGCTTGCAGAGAGAAATCAC	alignment	plot	GSM278370-4061	AT2G27400.1 cdna:known chromosome:TAIR10:2:11721539:11722468:-1 gene:AT2G27400 transcript:AT2G27400.1	0	379	0	29	29	1.5	5' TTCGCTTGCAGAGAGAAATCAC 3' \|\|\|\|\|\|\|\| \|\|\|\|\|o\|\|\|\|\|\|\| 3' GAGTAAGCGAACATCTCTTTTTAGTGTTGTTT 5'
332	Arabidopsis thaliana	TGCACTGCCTCTTCCCTGGCT	alignment	plot	GSM278370-4061	AT2G44790.1 cdna:known chromosome:TAIR10:2:18461906:18463309:-1 gene:AT2G44790 transcript:AT2G44790.1	0	709	0	16	16	3.5	5' TGCACTGCCTCTTCCCTGGCT 3' \|\|\|\|\|\| \|\|\|o \|\|\|\|\|\|\|\| 3' GTTTTCGTGACTGAGGTGGGACCGAGAGATTT 5'
333	Arabidopsis thaliana	TGGAGCCATGGTGGGAGCTG	alignment	plot	GSM278370-4061	AT4G26550.1 cdna:known chromosome:TAIR10:4:13402515:13404345:-1 gene:AT4G26550 transcript:AT4G26550.1	0	584	0.01	20	20	4	5' TGGAGCCATG-GTGGGAGCTG 3' o\|o\|\| \|\|\|\| \|\|\| \|\|\|\|\|\| 3' GGTAGCTTCTGTACACACGCTCGACTAAAAAT 5'
334	Arabidopsis thaliana	TCAATAGATTGGACTATGTAT	alignment	plot	GSM278370-4061	AT5G40060.1 cdna:known chromosome:TAIR10:5:16034576:16039096:1 gene:AT5G40060 transcript:AT5G40060.1	1	3686	0	3	3	4	5' TCAATAGATTGGACTATGTAT 3' \|\|\|\| \|\|\|\|\|\|o\| o\|\| \|\|\| 3' GTTGAGTT-TCTAACTTTGTAAATATGTATAT 5'
335	Arabidopsis thaliana	AAGAAGGAGGAACAACCTGTTG	alignment	plot	GSM278370-4061	AT2G26690.1 cdna:known chromosome:TAIR10:2:11347147:11350993:-1 gene:AT2G26690 transcript:AT2G26690.1	2	644	0.01	3	3	3	5' AAGAAGGAGGAACAACCTGTTG 3' \|\| \|\|o\|\|o\|\|\| \|\|\|\|\|\|\|\|\| 3' ATGATTATTTCTTCTTCTTGGACAACTTCTTC 5'
336	Arabidopsis thaliana	TAGAAGGGAGTGAGTTCTCG	alignment	plot	GSM278370-4061	AT5G38660.2 cdna:known chromosome:TAIR10:5:15470900:15475585:-1 gene:AT5G38660 transcript:AT5G38660.2	2	834	0.03	14	7	3	5' TAGAAGGGAGTGAGTTCTCG 3' \|\|\|\|\|\|o\|\|\|\|\|o\|\| \|\|\| 3' AGGTTTCTTCCTTCACTTAA-AGCGGACAGAA 5'
337	Arabidopsis thaliana	TTAGATGACCATCAACAAACT	alignment	plot	GSM278370-4061	AT1G02860.1 cdna:known chromosome:TAIR10:1:635144:637262:1 gene:AT1G02860 transcript:AT1G02860.1	2	269	0	3	1.5	1	5' TTAGATGACCATCAACAAACT 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' TTTAAATCTACTGGTAGTTGTTTGTTTAAGTC 5'
338	Arabidopsis thaliana	CTGAAGTGTTTGGGGGGACTC	alignment	plot	GSM278370-4061	AT5G10180.1 cdna:known chromosome:TAIR10:5:3193144:3197120:1 gene:AT5G10180 transcript:AT5G10180.1	2	136	0.01	4	4	3	5' CTGAAGTGTTTGGGGGGACTC 3' \|\|\|\|\|\|\|\|\|\|\|\|\|o\|o\|\|\| 3' CTTAAACTTCACAAACCCTCTTGAACTACACT 5'
339	Arabidopsis thaliana	TCGGACCAGGCTTCATTCCCC	alignment	plot	GSM278370-4061	AT1G52150.1 cdna:known chromosome:TAIR10:1:19409711:19414678:-1 gene:AT1G52150 transcript:AT1G52150.1	2	1279	0	41	13.6667	2.5	5' TCGGACCAGGCTTCATTCCCC 3' o\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' CTTAGGCCTGGTCCGAAGTAAGGTCCGTAGAC 5'
340	Arabidopsis thaliana	TTCTTCTTCAAAGGCTTTTAC	alignment	plot	GSM278370-4061	AT5G25580.1 cdna:known chromosome:TAIR10:5:8903505:8906311:1 gene:AT5G25580 transcript:AT5G25580.1	1	1304	0	5	5	3.5	5' TTCTTCTTCAAAGGCTTTT-AC 3' \|\| \|\| \|\|\|\|\|\|o\|\|\|\|\|\| \|\| 3' ACAAAACAACAAGTTTTCGAAAAATGATAAAG 5'
341	Arabidopsis thaliana	TGGAGAAGCAGGGCACGTGCG	alignment	plot	GSM278370-4061	AT1G56010.1 cdna:known chromosome:TAIR10:1:20946571:20948040:-1 gene:AT1G56010 transcript:AT1G56010.1	2	788	0	3	1.5	2	5' TGGAGAAGCAGGGCACGTGCG 3' \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| 3' TTTAACCTCTTCGTCCCATGCACGAGTAACTA 5'
342	Arabidopsis thaliana	TCATCATCATCATCATCTTCC	alignment	plot	GSM278370-4061	AT1G03530.1 cdna:known chromosome:TAIR10:1:880496:883391:-1 gene:AT1G03530 transcript:AT1G03530.1	2	1024	0.04	41	1.95238	1	5' TCATCATCATCATCATCTTCC 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| 3' TAGTAGTAGTAGTAGTAGTAGTAGGAGTAGGA 5'
343	Arabidopsis thaliana	TGTCTTCATCGTCATCACAA	alignment	plot	GSM278370-4061	AT5G37430.1 cdna:known chromosome:TAIR10:5:14842430:14844308:1 gene:AT5G37430 transcript:AT5G37430.1	1	1789	0.02	67	4.46667	4	5' TGTCTTCATCGTCATCACAA 3' oo\|\| \|\|\|o\|o\|\|\|\|\|\|\| \| 3' AGTAGTAGTAGTGGTAGTAGTGGTAGTAGTAG 5'
344	Arabidopsis thaliana	TGTCTTCATCGTCATCACAA	alignment	plot	GSM278370-4061	AT5G37430.1 cdna:known chromosome:TAIR10:5:14842430:14844308:1 gene:AT5G37430 transcript:AT5G37430.1	1	1756	0.05	67	4.46667	4	5' TGTCTTCATCGTCATCACAA 3' oo\|\| \|\|\|o\|o\|\|\|\|\|\|\| \| 3' AGTAGTAGTAGTGGTAGTAGTGGTAGTAGTAG 5'
345	Arabidopsis thaliana	TTCCACAGCTTTCTTGAACTT	alignment	plot	GSM278370-4061	AT5G27850.1 cdna:known chromosome:TAIR10:5:9873152:9874598:1 gene:AT5G27850 transcript:AT5G27850.1	2	542	0.05	21	21	3	5' TTCCAC-AGCTTTCTTGAACTT 3' \|\|\|\| \| \|\|\|\|\|\|\|\|oo\|\|\|\|\| 3' CGAAAGGAGATCGAAAGAGTTTGAAGGAAGGG 5'
346	Arabidopsis thaliana	ACTCGACCAGGGGGTCGAGT	alignment	plot	GSM278370-4061	AT5G13930.1 cdna:known chromosome:TAIR10:5:4488688:4490264:1 gene:AT5G13930 transcript:AT5G13930.1	2	714	0.05	7	7	4	5' ACTCGACCAGGGGGTCGAGT 3' \|\| \|\|\|\| \|\|\|\|o\|\|\|o\|\| 3' GGACTG-GCTGCTCCCTCAGTTCCACCCACAG 5'
347	Arabidopsis thaliana	GACAGAAGAGAGTGAGCAC	alignment	plot	GSM278370-4061	AT1G03730.1 cdna:known chromosome:TAIR10:1:930828:931895:-1 gene:AT1G03730 transcript:AT1G03730.1	2	251	0	3	0.0333333	2	5' GACAGAAGAGAGTGAGCAC 3' \|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\| 3' TCTTCT-TCTTCTCTCTCTCGTGTTTTTTTTT 5'
348	Arabidopsis thaliana	TCCGGAGGGATTCCTTCCTT	alignment	plot	GSM278370-4061	AT5G03240.2 cdna:known chromosome:TAIR10:5:771752:773165:-1 gene:AT5G03240 transcript:AT5G03240.2	2	604	0	5	1.25	0	5' TCCGGAGGGATTCCTTCCTT 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' GACTAGGCCTCCCTAAGGAAGGAACAGGACCT 5'
349	Arabidopsis thaliana	GATGCATCTTCACCAGGTGGA	alignment	plot	GSM278370-4061	AT4G33380.1 cdna:known chromosome:TAIR10:4:16071892:16074873:1 gene:AT4G33380 transcript:AT4G33380.1	0	431	0	3	3	4	5' GATGCATCTTCACCAGGTGGA 3' \|\| \|\| \|\|\|\|\|\|\|\|\|o \|\|o\| 3' CGAACT-CGAAGAAGTGGTTAACTTCTTAGTC 5'
350	Arabidopsis thaliana	GAGGAGGAGGAGCACCACCGT	alignment	plot	GSM278370-4061	AT1G13930.1 cdna:known chromosome:TAIR10:1:4761042:4761725:1 gene:AT1G13930 transcript:AT1G13930.1	2	392	0	14	4.66667	3	5' GAGGAGGAGGAGCACCACCGT 3' \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|oo 3' CAGCCTCCTCCTCCTGGTGGTCGTGGCCACCT 5'
351	Arabidopsis thaliana	TGGAGAAGCAGGGCACGTGCG	alignment	plot	GSM278370-4061	AT5G39610.1 cdna:known chromosome:TAIR10:5:15858400:15859788:-1 gene:AT5G39610 transcript:AT5G39610.1	2	781	0	6	6	2.5	5' TGGAGAAGCAGGGCACGTGCG 3' o\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \| 3' ACCAGCCTCTTCGTCCAGTGCACTCTGCTGCT 5'
352	Arabidopsis thaliana	TGACAGAAGAAAGAGAGCAC	alignment	plot	GSM278370-4061	AT1G53160.1 cdna:known chromosome:TAIR10:1:19806421:19807301:1 gene:AT1G53160 transcript:AT1G53160.1	1	602	0	3	3	2	5' TGACAGAAGAAAGAGAGCAC 3' \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| 3' ATCTACTGTCTTCTCTCTCTCGTCTGTCGAAG 5'
353	Arabidopsis thaliana	CTTGTGGAGAGGAAGCAAGA	alignment	plot	GSM278370-4061	AT4G00230.1 cdna:known chromosome:TAIR10:4:93923:97454:1 gene:AT4G00230 transcript:AT4G00230.1	1	1459	0.01	3	3	3.5	5' CTTG-TGGAGAGGAAGCAAGA 3' \|\|\|\| \|\|o\|o\|o\|\|\|\|\|\|\| \| 3' GGAGAACTACTTTTTCTTCGTTGTTTACCTCG 5'
354	Arabidopsis thaliana	TTTGGCGCTATCCATCCTGA	alignment	plot	GSM278370-4061	AT5G36290.2 cdna:known chromosome:TAIR10:5:14302740:14305176:1 gene:AT5G36290 transcript:AT5G36290.2	2	650	0.03	7	3.5	3.5	5' TTTGGCGCTATCCATCCTGA 3' \|\|\|\|\|\|o\|\|\|\|\|\| \| \|oo\| 3' GTTCAAACCGTGATAGG-ATGGTTCAGGTCAT 5'
355	Arabidopsis thaliana	GATGATGATGATACTCAGGA	alignment	plot	GSM278370-4061	AT3G15070.2 cdna:known chromosome:TAIR10:3:5070273:5073356:-1 gene:AT3G15070 transcript:AT3G15070.2	0	323	0.05	4	2	4	5' GATGATGATGATACTCAGGA 3' \| \|\|\|\|\|\|\|\| \|\|\|\| \|\|\| 3' CGTACAACTACTACCATGACACCTCCGGGCAT 5'
356	Arabidopsis thaliana	TCTTCTTCGTCGCCATTACT	alignment	plot	GSM278370-4061	AT4G13850.4 cdna:known chromosome:TAIR10:4:8020951:8022221:1 gene:AT4G13850 transcript:AT4G13850.4	0	426	0.04	52	13	4	5' TCTTCTTCGTCGCCATTACT 3' o\|\|o\|\|o\|o\| \|\|\|\|oo\|\|\| 3' TGGTGGAGGAGGTATCGGTGGTGAACCAGATA 5'
357	Arabidopsis thaliana	TAGCCAAGGATGACTTGCCTG	alignment	plot	GSM278370-4061	AT1G17590.2 cdna:known chromosome:TAIR10:1:6050222:6052513:-1 gene:AT1G17590 transcript:AT1G17590.2	2	1210	0	3	0.75	2.5	5' TAGCCAAGGATGACTTGCCTG 3' o\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| 3' CATCGTCGGTTCCTACTGAAGGGAAAAAAACA 5'
358	Arabidopsis thaliana	CTCGACCTGAGGGTCGAGTGGT	alignment	plot	GSM278370-4061	AT4G34050.1 cdna:known chromosome:TAIR10:4:16310775:16312216:1 gene:AT4G34050 transcript:AT4G34050.1	2	786	0.02	16	8	4	5' CTCGACCTGAGGGTCGAGTGGT 3' \|\|\|\|\| \|o\|\|\|\|\|\|\| \|\|oo\|o 3' TCTAGAGCTAGGCTCCCAG-TCGTCGTTCTCG 5'
359	Arabidopsis thaliana	TCTTCTTCGTCGCCATTACT	alignment	plot	GSM278370-4061	AT1G61065.1 cdna:known chromosome:TAIR10:1:22490244:22491461:-1 gene:AT1G61065 transcript:AT1G61065.1	2	60	0.01	11	0.0155729	2.5	5' TCTTCTTCGTCGCCATTACT 3' \|\|\|\|\|\|\|\| \|\|\| \|\|o\|\|\|\| 3' AAGAAGAAGAAGAAGCTGTGATGACAAAGACC 5'
360	Arabidopsis thaliana	TGACAGAAGAAAGAGAGCAC	alignment	plot	GSM278370-4061	AT1G27370.1 cdna:known chromosome:TAIR10:1:9505201:9508280:-1 gene:AT1G27370 transcript:AT1G27370.1	1	2378	0	6	1.5	1	5' TGACAGAAGAAAGAGAGCAC 3' \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| 3' ATCAACTGTCTTCTCTCTCTCGTGACATCTTT 5'
361	Arabidopsis thaliana	TTGGCATTCTGTCCACCTCC	alignment	plot	GSM278370-4061	AT3G12120.1 cdna:known chromosome:TAIR10:3:3860285:3863050:-1 gene:AT3G12120 transcript:AT3G12120.1	2	192	0.01	5	2.5	3	5' TTGGCATTCTGTCCACCTCC 3' oo\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \| 3' CCTTGGCCGTAAGA-AGGTGGACGTGGGTACA 5'
362	Arabidopsis thaliana	TTGACAGAAGATAGAGAGCAC	alignment	plot	GSM278370-4061	AT1G27370.1 cdna:known chromosome:TAIR10:1:9505201:9508280:-1 gene:AT1G27370 transcript:AT1G27370.1	2	2379	0	3	0.75	1	5' TTGACAGAAGATAGAGAGCAC 3' \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| 3' CATCAACTGTCTTCTCTCTCTCGTGACATCTT 5'
363	Arabidopsis thaliana	TAATTTGGTGTTTCTTCGATC	alignment	plot	GSM278370-4061	AT3G58820.1 cdna:known chromosome:TAIR10:3:21752533:21754615:1 gene:AT3G58820 transcript:AT3G58820.1	0	1301	0.01	2	0.666667	3.5	5' TAATTTGGTGT-TTCTTCGATC 3' \|\|\|o\|\|\| \|\|\| \|\|\|\|\|\| \|\|\| 3' AGCTATTGAACAACATAAGAAGGTAGTAGACG 5'
364	Arabidopsis thaliana	GAACCCAAGACCTCACCCTT	alignment	plot	GSM278370-4061	AT3G57410.1 cdna:known chromosome:TAIR10:3:21243136:21251100:-1 gene:AT3G57410 transcript:AT3G57410.1	2	3233	0	6	6	3	5' GAACCCAAGACCTCACCCTT 3' o\|\|\|\|\|\|\|o\|\|\| \|\|\|\|\| \| 3' TTAGTTTGGGTTTTGG-GTGGGTACTCTTTCT 5'
365	Arabidopsis thaliana	TGATTGAGCCGTGTCAATATC	alignment	plot	GSM278370-4061	AT3G60630.1 cdna:known chromosome:TAIR10:3:22410365:22412608:-1 gene:AT3G60630 transcript:AT3G60630.1	0	1056	0	30	30	1	5' TGATTGAGCCGTGTCAATATC 3' \|\|\|\|\|\|\|\|\|\|\|o\|o\|\|\|\|\|\|\| 3' CAACACTAACTCGGCGCGGTTATAGGGAACGC 5'
366	Arabidopsis thaliana	TTGAGCCGTGCCAATATCACG	alignment	plot	GSM278370-4061	AT3G60630.1 cdna:known chromosome:TAIR10:3:22410365:22412608:-1 gene:AT3G60630 transcript:AT3G60630.1	2	1053	0	5	5	2.5	5' TTGAGCCGTGCCAATATCACG 3' \|\|\|\|\|\|\|\|o\|\|\|\|\|\|\|\|\| \| 3' CACTAACTCGGCGCGGTTATAGGGAACGCGCT 5'
367	Arabidopsis thaliana	TCATGGTCGTGATCGTGGTCATC	alignment	plot	GSM278370-4061	AT1G47970.1 cdna:known chromosome:TAIR10:1:17687269:17688816:1 gene:AT1G47970 transcript:AT1G47970.1	2	390	0.02	4	4	4	5' TCATGGTCGTGATCGTGGTCATC 3' \|\|\|\| \|\|\|\|\| \|\|\|o\| o\|\|\|\|\| 3' TAGTAGTAGCAGCAGTAGTAGTAGTAGAGGTA 5'
368	Arabidopsis thaliana	TTCGCTTGCAGAGAGAAATCAC	alignment	plot	GSM278370-4061	AT2G39681.1 cdna:known chromosome:TAIR10:2:16539384:16540417:-1 gene:AT2G39681 transcript:AT2G39681.1	2	418	0	55	55	1.5	5' TTCGCTTGCAGAGAGAAATCAC 3' \|\|\|\|\|\|\|\| \|\|\|\|\|o\|\|\|\|\|\|\| 3' TAGTAAGCGAACCTCTCTTTTTAGTGTTTTGG 5'
369	Arabidopsis thaliana	CAAGCACAACATATCCTCTT	alignment	plot	GSM278370-4061	AT5G13030.1 cdna:known chromosome:TAIR10:5:4133204:4136688:1 gene:AT5G13030 transcript:AT5G13030.1	1	15	0	4	4	4	5' CAAGC-ACAACATATCCTCTT 3' \|\| \|\| \|\|\|\|\|\|\| \|\| \|\|\|\| 3' TGTGTGCGTTGTTGTAAAGAAGAAGGAA 5'
370	Arabidopsis thaliana	TCATCTTCATCATCATCATCT	alignment	plot	GSM278370-4061	AT4G38480.1 cdna:known chromosome:TAIR10:4:18003916:18006140:1 gene:AT4G38480 transcript:AT4G38480.1	0	1408	0.02	3	0.3	1.5	5' TCATCTTCATCATCATCATCT 3' \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|o 3' GAGTAGTAGTAGTAGTAGTAGTAGGGGTACTA 5'
371	Arabidopsis thaliana	CTCTCTTTCTCCATGGCTGAC	alignment	plot	GSM278370-4061	AT1G79550.1 cdna:known chromosome:TAIR10:1:29924023:29926442:-1 gene:AT1G79550 transcript:AT1G79550.1	2	914	0.04	5	2.5	3.5	5' CTCT-CTTTCTCCATGGCTGAC 3' \|\| \| \|\|\|\|\|\|\|\|\|\|\|o \|\|\|\| 3' CCGGAAACGAAAGAGGTACTCACTGAAACGGT 5'
372	Arabidopsis thaliana	TTAGATTCACGCACAAACTCG	alignment	plot	GSM278370-4061	AT1G31280.1 cdna:known chromosome:TAIR10:1:11181711:11185344:1 gene:AT1G31280 transcript:AT1G31280.1	0	3233	0	27	27	1	5' TTAGATTCACGCACAAACTCG 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' GGTTAATCTAAGTGCGTGTTTGAGGAAAGATG 5'
373	Arabidopsis thaliana	TCCAAAGGGATCGCATTGATCC	alignment	plot	GSM278370-4061	AT1G12820.1 cdna:known chromosome:TAIR10:1:4368760:4371293:-1 gene:AT1G12820 transcript:AT1G12820.1	0	1895	0	23	23	2	5' TCCAAAGGGATCGCATTGATCC 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \| 3' CTGTAGGTTTCCCTAGCGTAACAAAGCATGGA 5'
374	Arabidopsis thaliana	ACCGTCGAGAATTTTGGAGAA	alignment	plot	GSM278370-4061	AT5G23160.1 cdna:known chromosome:TAIR10:5:7795256:7796346:-1 gene:AT5G23160 transcript:AT5G23160.1	1	887	0	10	10	4	5' ACCGTCGAGAATTTTGGAGAA 3' \|\|\|o\|\|o\|\|\| \|\|\| o\|\|o\|\| 3' AATGTGGTAGTTCT-AAACTCTTTTATTTATT 5'
375	Arabidopsis thaliana	AAAGTCGCAATTCCCTTGCAACA	alignment	plot	GSM278370-4061	AT5G67030.2 cdna:known chromosome:TAIR10:5:26753522:26757236:-1 gene:AT5G67030 transcript:AT5G67030.2	2	955	0.01	2	1	4	5' AAAGTC-GCAATTCCCTTGCAACA 3' \|\|\|o\|\| \|\|\|\|\|o\|\|\| \|\| \|\|\|\| 3' ATATTTTAGACGTTAGGGGCACATTGTTCACA 5'
376	Arabidopsis thaliana	TGACAGAAGAAAGAGAGCAC	alignment	plot	GSM278370-4061	AT3G15270.1 cdna:known chromosome:TAIR10:3:5140365:5141348:-1 gene:AT3G15270 transcript:AT3G15270.1	0	655	0.02	41	41	3	5' TGACAGAAGAAAGAGAGCAC 3' \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| 3' ATCTACTGTCTTCTCTCTCTCGCCCTCCCAAA 5'
377	Arabidopsis thaliana	TTCGAGGCCTATTAAACCTCTG	alignment	plot	GSM278370-4061	AT5G54770.1 cdna:known chromosome:TAIR10:5:22246592:22248332:1 gene:AT5G54770 transcript:AT5G54770.1	2	1179	0.01	15	15	4	5' TTCGAGGCCTATTAAACCTCTG 3' \|\|\|o\|\|o\| \|\|\|\|\|\|\|\| o\|\|o 3' TTTCAAGTTCTGTATAATTTGTGGATTTGAGG 5'
378	Arabidopsis thaliana	AGAGATACGACGGAGATGGA	alignment	plot	GSM278370-4061	AT5G39471.1 cdna:known chromosome:TAIR10:5:15793965:15795596:-1 gene:AT5G39471 transcript:AT5G39471.1	1	498	0.04	2	2	4	5' AGAGATACGACGGAGATGGA 3' \|\|\|\|\|\|\|\|\|\| \|\| \|\|\| \| 3' GTACTCTCTATGCTACCAGTAC-TGCCAACTA 5'
379	Arabidopsis thaliana	GTGACGGTGGGACGAATGTT	alignment	plot	GSM278370-4061	AT4G34830.1 cdna:known chromosome:TAIR10:4:16599605:16606027:-1 gene:AT4G34830 transcript:AT4G34830.1	0	3429	0	31	31	4	5' GTGACGGTGGGACGAATGTT 3' \|o\|\|\|\| \| \|\|\| \|\|\|\|\|o\| 3' ACGACGCTGCGA-CCTCCTTACGACACTACAT 5'
380	Arabidopsis thaliana	GAGGTGAAGACACTCGGCCTCG	alignment	plot	GSM278370-4061	AT5G32510.2 cdna:pseudogene chromosome:TAIR10:5:12138752:12139374:-1 gene:AT5G32510 transcript:AT5G32510.2	1	188	0	3	3	2	5' GAGGTGAAGACACTCGGCCTCG 3' \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|o\|\|\|\|o 3' CTACCTCCACTTCTGTGTGCTGGAGTACCAGC 5'
381	Arabidopsis thaliana	AAACGACGTCGTTTCGTTCT	alignment	plot	GSM278370-4061	AT1G75750.1 cdna:known chromosome:TAIR10:1:28441526:28442367:-1 gene:AT1G75750 transcript:AT1G75750.1	2	419	0.02	7	3.5	3	5' AAACGACGTCGTTTCGTTCT 3' \|\|\|\|\|\|\|o\|\|\|\|oo\|o\|\| \| 3' TTGTTTTGCTGTAGCAGGGTAATAGGCGTCGT 5'
382	Arabidopsis thaliana	GGCGCCTCTCCATTGGCAGG	alignment	plot	GSM278370-4061	AT5G13370.1 cdna:known chromosome:TAIR10:5:4286819:4289554:1 gene:AT5G13370 transcript:AT5G13370.1	2	416	0.01	7	1.75	3.5	5' GGCGCCTCTCCATTGGCAGG 3' \|o\|\| \|\|\|\|\|\|\|\|\|o\|\| \|o 3' TAGTCTGCCGAGAGGTAATCG-CTATGCCAGC 5'
383	Arabidopsis thaliana	GGAATCTTGATGATGCTGCAT	alignment	plot	GSM278370-4061	AT4G36920.1 cdna:known chromosome:TAIR10:4:17400847:17403332:1 gene:AT4G36920 transcript:AT4G36920.1	0	1340	0	18	9	2	5' GGAATCTTGATGATGCTGCAT 3' o\|\|\|\|\|o\|\|\|\|\|\|\|\|\|\|\|\|\| 3' CCTCTCTTAGGACTACTACGACGTCGTAAACA 5'
384	Arabidopsis thaliana	GATTCTTCTGAGCTAGCCTC	alignment	plot	GSM278370-4061	AT5G04140.1 cdna:known chromosome:TAIR10:5:1129852:1138442:1 gene:AT5G04140 transcript:AT5G04140.1	2	2607	0.05	3	1.5	3.5	5' GATTCTTCTGAGCTAGCCTC 3' o \|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\| 3' CACATCAAGAAGACTCGAACG-AGTTACCAAT 5'
385	Arabidopsis thaliana	GGCGCCTCTCCATTGGCAGG	alignment	plot	GSM278370-4061	AT5G19090.1 cdna:known chromosome:TAIR10:5:6387489:6390024:1 gene:AT5G19090 transcript:AT5G19090.1	0	1458	0	5	1.66667	3.5	5' GGCGCCTCTCCATTGGCAGG 3' o \|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\| 3' GTGGTGGCGGAG-GGTAACCGGCCTTTGGACC 5'
386	Arabidopsis thaliana	GGATTTGCTTACTTTGGCCTT	alignment	plot	GSM278370-4061	AT3G09260.1 cdna:known chromosome:TAIR10:3:2840477:2843781:-1 gene:AT3G09260 transcript:AT3G09260.1	2	1277	0	8	8	3	5' GGATTTGCTTACTTTGGCCTT 3' \|\|\|\|\|\|\|\| \|\| \|\|\|\| \|\|\|\| 3' AAGGCCTAAACGCAT-AAACAGGAATTACATG 5'
387	Arabidopsis thaliana	GGCGCCTCTCCATTGGCAGG	alignment	plot	GSM278370-4061	AT5G13360.2 cdna:known chromosome:TAIR10:5:4283762:4286229:1 gene:AT5G13360 transcript:AT5G13360.2	0	282	0	7	1.75	3	5' GGCGCCTCTCCATTGGCAGG 3' \|o\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|o 3' TAGTCTGCCGAGAGGTAACCG-CTATGCTAGC 5'
388	Arabidopsis thaliana	ACTCGACCACGAAGTCGAGT	alignment	plot	GSM278370-4061	AT1G13440.2 cdna:known chromosome:TAIR10:1:4608196:4610647:-1 gene:AT1G13440 transcript:AT1G13440.2	2	448	0.03	6	2	3.5	5' ACTCGACCACGAAGTCGAGT 3' \|\|\|\|o\|\| \|\|o\|\|\|\|\| \|\|o 3' CATCTGAGTTGTTGTTTCAG-TCGAGGTCGGA 5'
389	Arabidopsis thaliana	GACGGTGTCGATCGACACTG	alignment	plot	GSM278370-4061	AT5G67440.1 cdna:known chromosome:TAIR10:5:26912707:26916294:-1 gene:AT5G67440 transcript:AT5G67440.1	2	2307	0.04	4	2	4	5' GACGGTGTCGATCGA-CACTG 3' \|\|\|\|\|o\|\|\|\|\|\| \| \|\|\|o\| 3' TCAGCTGCCGCAGCTAAATAGTGGCTGCCATC 5'
390	Arabidopsis thaliana	CATCCAAGGTGTTTGTAGAAA	alignment	plot	GSM278370-4061	AT4G17890.1 cdna:known chromosome:TAIR10:4:9937022:9939493:1 gene:AT4G17890 transcript:AT4G17890.1	2	383	0.03	2	1	3.5	5' CATCCAAGGTGTTTGTAGAAA 3' \|\|\|\|\|\| \| \|\|o\|\|\| \|\|\|\|\| 3' TCAGGTAGGTACAACGAACTTCTTTTGGACTC 5'
391	Arabidopsis thaliana	TTCCACAGCTTTCTTGAACTT	alignment	plot	GSM278370-4061	AT2G22840.1 cdna:known chromosome:TAIR10:2:9728756:9731301:1 gene:AT2G22840 transcript:AT2G22840.1	2	792	0.03	39	39	3	5' TTCCACA-GCTTTCTTGAACTT 3' \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| 3' CGGAAGGTGTCCGAAAGAACTTGCTACCGCCG 5'
392	Arabidopsis thaliana	GATTCTTCTGAGCTAGCCTC	alignment	plot	GSM278370-4061	AT1G70610.1 cdna:known chromosome:TAIR10:1:26621961:26626503:1 gene:AT1G70610 transcript:AT1G70610.1	1	1047	0.01	10	10	4	5' GATTCTTCTGAGCTAGCCTC 3' \|\| \|\|\|o\|\|\|\|o \|\|\|\| \|\| 3' GACACT-AGAGGACTTAATCGAAGCGACAGAA 5'
393	Arabidopsis thaliana	ACTCGACCTGGAGGTCGAGTG	alignment	plot	GSM278370-4061	AT1G07930.1 cdna:known chromosome:TAIR10:1:2458244:2460790:1 gene:AT1G07930 transcript:AT1G07930.1	2	212	0.04	3	0.6	4	5' ACTCGACCTGGAGGTCGAGTG 3' \|\|o\|o\|\| \|\| \|\|o\|\|o\|\|\|\| 3' ATGGTGGGTTGAACATCTAGTTCACAGGTCAC 5'
394	Arabidopsis thaliana	TCAATGCATTGAAAGTGACTA	alignment	plot	GSM278370-4061	AT1G63330.1 cdna:known chromosome:TAIR10:1:23489840:23491519:1 gene:AT1G63330 transcript:AT1G63330.1	0	775	0	9	2.25	1	5' TCAATGCATTGAAAGTGACTA 3' \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| 3' AGCTAGTTACGTAACTTGCACTGATTTAATCC 5'
395	Arabidopsis thaliana	TGACAGAAGAAAGAGAGCAC	alignment	plot	GSM278370-4061	AT5G43270.2 cdna:known chromosome:TAIR10:5:17360305:17363773:-1 gene:AT5G43270 transcript:AT5G43270.2	0	1159	0	20	5.08333	1	5' TGACAGAAGAAAGAGAGCAC 3' \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| 3' TTAAACTGTCTTCTCTCTCTCGTGGTAGTTCT 5'
396	Arabidopsis thaliana	GAGCATTGTGGAGATCAAAT	alignment	plot	GSM278370-4061	AT1G65060.2 cdna:known chromosome:TAIR10:1:24167202:24171502:-1 gene:AT1G65060 transcript:AT1G65060.2	2	1951	0	27	13.5	2.5	5' GAGCATTGTGGAGATCAAAT 3' o\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\| 3' GTGTTTCGTAACACCTAT-GTTTACTTGCAAA 5'
397	Arabidopsis thaliana	TGCCTGGCTCCCTGTATGCC	alignment	plot	GSM278370-4061	AT2G28350.1 cdna:known chromosome:TAIR10:2:12114331:12116848:1 gene:AT2G28350 transcript:AT2G28350.1	0	1340	0	25	25	1	5' TGCCTGGCTCCCTGTATGCC 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| 3' TCGAACGGACCGAGGGACATAAGGACGTCCTC 5'
398	Arabidopsis thaliana	GGTGATGCCATCTACTCGAC	alignment	plot	GSM278370-4061	AT3G16010.1 cdna:known chromosome:TAIR10:3:5434014:5436264:1 gene:AT3G16010 transcript:AT3G16010.1	2	1982	0.04	4	4	4	5' GGTGATGCCATC-TACTCGAC 3' o\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|o\| 3' TCATTCACTACCGTAGTATGAGTTTCGGAAAT 5'
399	Arabidopsis thaliana	TCGACCAGGGGGTCGAGTGAT	alignment	plot	GSM278370-4061	AT1G70730.3 cdna:known chromosome:TAIR10:1:26669020:26673166:-1 gene:AT1G70730 transcript:AT1G70730.3	2	1913	0.05	3	1	4	5' TCGACCAGGGGGTCGAGTG-AT 3' \|\|o\|\|\|\|\|\|\|\|oo\|o\|\| \| \|\| 3' TTGTAGTTGGTCCCCTGGTTCTCGTAGGACTC 5'
400	Arabidopsis thaliana	TTGACAGAAGATAGAGAGCAC	alignment	plot	GSM278370-4061	AT5G43270.2 cdna:known chromosome:TAIR10:5:17360305:17363773:-1 gene:AT5G43270 transcript:AT5G43270.2	2	1160	0	9	3	1	5' TTGACAGAAGATAGAGAGCAC 3' \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| 3' CTTAAACTGTCTTCTCTCTCTCGTGGTAGTTC 5'
401	Arabidopsis thaliana	TTGGACTGAAGGGAGCTCC	alignment	plot	GSM278370-4061	AT3G15030.2 cdna:known chromosome:TAIR10:3:5061681:5064038:1 gene:AT3G15030 transcript:AT3G15030.2	2	1487	0.01	12	4	2.5	5' TTGGACTGAAGGGAGCTCC 3' o\|\|\|\|\|\|\|\|\|\|\|\| o\|o\|\| 3' CATTGACCTGACTTCCCCTGGGGAGACTCTTA 5'
402	Arabidopsis thaliana	TTGGACTGAAGGGAGCTCCCT	alignment	plot	GSM278370-4061	AT3G15030.2 cdna:known chromosome:TAIR10:3:5061681:5064038:1 gene:AT3G15030 transcript:AT3G15030.2	2	1487	0.01	12	4	3.5	5' TTGGACTGAAGGGAGCTCCCT 3' o\|\|\|\|\|\|\|\|\|\|\|\| o\|o\|\| \| 3' CATTGACCTGACTTCCCCTGGGG-AGACTCTT 5'
403	Arabidopsis thaliana	TAGAAGGGAGTGAGTTCTCG	alignment	plot	GSM278370-4061	AT1G08930.2 cdna:known chromosome:TAIR10:1:2873465:2877270:1 gene:AT1G08930 transcript:AT1G08930.2	2	1302	0.02	5	2.5	3	5' TAGAAGGGAGTGAGTTCTCG 3' \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \| 3' TCACTTCTACCCTCACTCAAGACCTTCTTACG 5'
404	Arabidopsis thaliana	GTTCCGGCGAGTCTGTTCCC	alignment	plot	GSM278370-4061	AT3G26520.1 cdna:known chromosome:TAIR10:3:9722443:9723815:-1 gene:AT3G26520 transcript:AT3G26520.1	2	801	0.02	12	12	3.5	5' GTTCCGGCGAGTCTGTTCCC 3' o\|\|\|\|\|\|\|\|\|\|\|\|oooo \|\| 3' CTATTAAGGCCGCTCAGGTGGTGGTTATTCTC 5'
405	Arabidopsis thaliana	TGTTGCCGTAGCTGCAGCGGC	alignment	plot	GSM278370-4061	AT3G16100.1 cdna:known chromosome:TAIR10:3:5459172:5460790:1 gene:AT3G16100 transcript:AT3G16100.1	0	686	0	31	31	4	5' TGTTGCCGTAGCTGCAGCGGC 3' \|\|\|\|\|\|\|\| \|\|\|o \|\|\|\| o\| 3' AGAAACAACGGC-TCGGGGTCGATGTAGTTAC 5'
406	Arabidopsis thaliana	ACCATCAATTCATCGTGGCCG	alignment	plot	GSM278370-4061	AT4G18120.1 cdna:known chromosome:TAIR10:4:10038126:10042248:1 gene:AT4G18120 transcript:AT4G18120.1	0	2608	0	21	10.5	4	5' ACCATCAATTCATCGTGGCCG 3' \|\|\|\|\|\|\|\|\|\|\|\| \|o\|\| \| o 3' GTGTTGGTAGTTAAGT-GTACAGATCTTGTTA 5'
407	Arabidopsis thaliana	TCTATCTTCTTCGTCTTCGAT	alignment	plot	GSM278370-4061	AT4G14380.1 cdna:known chromosome:TAIR10:4:8285766:8286772:1 gene:AT4G14380 transcript:AT4G14380.1	0	457	0.04	22	11	4	5' TCTATCTTCTTCGTCTTCGAT 3' \|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\| \| 3' AAGAAGA-AGAAGAAGAAGAAGAAAAACGAGA 5'
408	Arabidopsis thaliana	TTGTTCCCCTCCTAAAGGAT	alignment	plot	GSM278370-4061	AT1G48410.2 cdna:known chromosome:TAIR10:1:17886098:17892586:-1 gene:AT1G48410 transcript:AT1G48410.2	2	3019	0.03	7	2.33333	3.5	5' TTGTTCCCCTCCTAAAGGAT 3' \|\|\|\|\|\| \| \|\|\|o\|\|\|\|o\|o 3' TTTCAACAAGAGTAGGGTTTCTTGCACCATTA 5'
409	Arabidopsis thaliana	CCTCGCAAAAGTTGCGAGGGAT	alignment	plot	GSM278370-4061	AT3G19170.1 cdna:known chromosome:TAIR10:3:6625421:6632033:-1 gene:AT3G19170 transcript:AT3G19170.1	2	3376	0.04	4	1.7	4	5' CCTCGCAAAAGTTGCGAGGGAT 3' \|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\| \| \| 3' AAGTGGAGCTTTTTCAAC-CTCGCAAGTAACA 5'
410	Arabidopsis thaliana	CTATCATCATCATCCTCGTAA	alignment	plot	GSM278370-4061	AT1G16150.1 cdna:known chromosome:TAIR10:1:5532415:5534877:1 gene:AT1G16150 transcript:AT1G16150.1	0	2198	0.04	3	0.3	3.5	5' CTATCATCATCATCCTCGTAA 3' \| \|\|\|\|\|\|\|\|\|\|\|\| \|\|o\| \| 3' AGTAG-TAGTAGTAGTAGTAGTAGTAGTAGTA 5'
411	Arabidopsis thaliana	GGTCGAGTGAAGTGATCGAGT	alignment	plot	GSM278370-4061	AT4G33010.1 cdna:known chromosome:TAIR10:4:15926670:15931332:-1 gene:AT4G33010 transcript:AT4G33010.1	2	3409	0.05	4	2	4	5' GGTCGAGTGAAGTGATCGAGT 3' o \|\|\|\|o\|\|\|\|o\|o\|\| \|\|\|\| 3' TACATAAGCTTACTTTATTATCTCATTCTCTG 5'
412	Arabidopsis thaliana	TCAATGCATTGAAAGTGACTA	alignment	plot	GSM278370-4061	AT4G24230.1 cdna:known chromosome:TAIR10:4:12566631:12568821:-1 gene:AT4G24230 transcript:AT4G24230.1	0	1316	0.02	4	0.8	4	5' TCAATGCATT-GAAAGTGACTA 3' \|\|\|\|\|\|\|\|o\| \|\|\|\| oo\|\|o\| 3' TATTAGTTACGTGATCTTTAGTTGGTCAGGAG 5'
413	Arabidopsis thaliana	TCCTCCACCACCGAGAGCATT	alignment	plot	GSM278370-4061	AT2G32690.1 cdna:known chromosome:TAIR10:2:13863717:13864596:-1 gene:AT2G32690 transcript:AT2G32690.1	2	615	0.04	26	6.5	3.5	5' TCCTCCACCACCGAGAGCATT 3' \|\|\|\|\|\|\|\|\|\|\|\| \|o \|\| \|\| 3' CTGGAGGAGGTGGTGG-TTACGGAAATGGTTT 5'
414	Arabidopsis thaliana	TGATTGAGCCGTGTCAATATC	alignment	plot	GSM278370-4061	AT2G45160.1 cdna:known chromosome:TAIR10:2:18617862:18620150:-1 gene:AT2G45160 transcript:AT2G45160.1	0	1014	0	26	26	1	5' TGATTGAGCCGTGTCAATATC 3' \|\|\|\|\|\|\|\|\|\|\|o\|o\|\|\|\|\|\|\| 3' TACCACTAACTCGGCGCGGTTATAGGGAACGC 5'
415	Arabidopsis thaliana	AAACGACGTCGTTTCGTTCT	alignment	plot	GSM278370-4061	AT5G61400.1 cdna:known chromosome:TAIR10:5:24681550:24683514:1 gene:AT5G61400 transcript:AT5G61400.1	1	675	0.03	4	4	4	5' AAACGACGTCGTTTCGTTCT 3' \|\|\|\|\|\|\|\|\|o\|\|\|\|o\| \| 3' AGGGATTGCTGCAGTAAAGTA-GTTCTTCAAA 5'
416	Arabidopsis thaliana	TTGAGCCGTGCCAATATCACG	alignment	plot	GSM278370-4061	AT2G45160.1 cdna:known chromosome:TAIR10:2:18617862:18620150:-1 gene:AT2G45160 transcript:AT2G45160.1	2	1011	0	10	10	2.5	5' TTGAGCCGTGCCAATATCACG 3' \|\|\|\|\|\|\|\|o\|\|\|\|\|\|\|\|\| \| 3' CACTAACTCGGCGCGGTTATAGGGAACGCGCT 5'
417	Arabidopsis thaliana	ACATCATCATCATCATCTTCC	alignment	plot	GSM278370-4061	AT5G52300.1 cdna:known chromosome:TAIR10:5:21237056:21239529:1 gene:AT5G52300 transcript:AT5G52300.1	2	346	0.01	5	2.5	1	5' ACATCATCATCATCATCTTCC 3' \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' AGTATG-AGTAGTAGTAGTAGAAGGTGTAGCA 5'
418	Arabidopsis thaliana	CACATCAGACGGTTGAGTTGCT	alignment	plot	GSM278370-4061	AT3G11890.2 cdna:known chromosome:TAIR10:3:3755542:3757775:1 gene:AT3G11890 transcript:AT3G11890.2	2	1777	0.04	3	3	4	5' CACATCAGACGGTTGAGTTGCT 3' \|\|\|\|\|\|\|o\|\|o\|\| \|\| \|\|\| \| 3' ACTAGTGTAGTTTGTCACCT-AACAACGAGAC 5'
419	Arabidopsis thaliana	TCCATGAAATGCCATGAGAG	alignment	plot	GSM278370-4061	AT1G77550.1 cdna:known chromosome:TAIR10:1:29138299:29143011:-1 gene:AT1G77550 transcript:AT1G77550.1	1	1269	0.02	5	5	4	5' TCCATGAAATGCCATGAGAG 3' \|\|\|\|\| \| \|\|o\|\|\|\|o\| \|\| 3' AAGTAGGTAGTGTATGGTATT-TCTTCAAAGT 5'
420	Arabidopsis thaliana	TCTGCATGCTCCTTGTTGATG	alignment	plot	GSM278370-4061	AT2G14610.1 cdna:known chromosome:TAIR10:2:6241704:6242463:-1 gene:AT2G14610 transcript:AT2G14610.1	0	592	0.01	29	29	4	5' TCTGCATGCTCCTTGTTGATG 3' \| \|\| \|\|\|\|\|\|\|\|\|o\|\|\|\| o 3' ACGTATAC-TACGAGGAATAACTTTATGACTA 5'
421	Arabidopsis thaliana	GGAATCTTGATGATGCTGCAT	alignment	plot	GSM278370-4061	AT5G60120.2 cdna:known chromosome:TAIR10:5:24207689:24211743:1 gene:AT5G60120 transcript:AT5G60120.2	1	1821	0	5	2.5	1	5' GGAATCTTGATGATGCTGCAT 3' o\|\|\|\|\|o\|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' TCACTCTTAGGACTACTACGACGTAAACTTTT 5'
422	Arabidopsis thaliana	GAGCATTGTGGAGATCAAAT	alignment	plot	GSM278370-4061	AT1G34550.1 cdna:known chromosome:TAIR10:1:12646696:12652646:-1 gene:AT1G34550 transcript:AT1G34550.1	2	2113	0.05	2	2	3	5' GAGCATTGTGGAGATCAAAT 3' \|\|o\|\| \|\|\|\|o\|\|\|\| \|\|\|\| 3' GGAACTTGT-ACACTTCTAATTTACCAAATAG 5'
423	Arabidopsis thaliana	TCCAGTGTCGATCGACACTAG	alignment	plot	GSM278370-4061	AT4G23670.1 cdna:known chromosome:TAIR10:4:12332560:12333804:-1 gene:AT4G23670 transcript:AT4G23670.1	2	636	0.05	5	5	4	5' TCCAGTGTCGATCGACACTAG 3' \| \|\|o\|o\|\|\|\|\|\|\|\| \| \|\|\| 3' TATTATGTTATAGCTAGCTCT-ATCACTACTG 5'
424	Arabidopsis thaliana	GTGAGTTTAGGGTTCTTGAA	alignment	plot	GSM278370-4061	AT5G48810.1 cdna:known chromosome:TAIR10:5:19789067:19790334:-1 gene:AT5G48810 transcript:AT5G48810.1	0	77	0.03	21	21	4	5' GTGAGTTTAGGGTTCTTGAA 3' \|\|\|\|\|\|\|\| \|\|o\| \|\|\|o \| 3' TAGACACTCAAACCCTA-GAATGTGGTTGGCG 5'
425	Arabidopsis thaliana	TAGCCAAGGATGACTTGCCTG	alignment	plot	GSM278370-4061	AT5G06510.1 cdna:known chromosome:TAIR10:5:1984991:1987044:1 gene:AT5G06510 transcript:AT5G06510.1	2	1078	0	2	0.666667	2.5	5' TAGCCAAGGATGACTTGCCTG 3' \|\|\|\|\|\|o\|\|\|\|\| \|\|\|\|\|\|\| 3' CGTACTCGGTTTCTACTAAACGGACAAATGTC 5'
426	Arabidopsis thaliana	GTGAGTTTAGGGTTCTTGAA	alignment	plot	GSM278370-4061	AT3G52230.1 cdna:known chromosome:TAIR10:3:19371213:19372687:1 gene:AT3G52230 transcript:AT3G52230.1	2	81	0	7	7	2	5' GTGAGTTTAGGGTTCTTGAA 3' \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| 3' CTAAAACTCAAATCCCAA-AACTTAACTTAGC 5'
427	Arabidopsis thaliana	TCCTCCACCACCGAGAGCAT	alignment	plot	GSM278370-4061	AT2G32690.4 cdna:known chromosome:TAIR10:2:13863717:13864596:-1 gene:AT2G32690 transcript:AT2G32690.4	2	528	0.05	26	6.5	3.5	5' TCCTCCACCACCGAGAGCAT 3' \|\|\|\|\|\|\|\|\|\|\|\| \|o \|\| \| 3' CTGGAGGAGGTGGTGG-TTACGGAAATGGTTT 5'
428	Arabidopsis thaliana	TATGAGAGTATTATAAGTCAC	alignment	plot	GSM278370-4061	AT1G06580.1 cdna:known chromosome:TAIR10:1:2014003:2016054:-1 gene:AT1G06580 transcript:AT1G06580.1	2	1096	0	7	7	0	5' TATGAGAGTATTATAAGTCAC 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' GTAAATACTCTCATAATATTCAGTGACGTAAA 5'
429	Arabidopsis thaliana	ATGCACTGCCTCTTCCCTGGC	alignment	plot	GSM278370-4061	AT1G72230.1 cdna:known chromosome:TAIR10:1:27188066:27189244:1 gene:AT1G72230 transcript:AT1G72230.1	2	824	0.04	4	4	4	5' ATGCACTGCCTCTTCCCTGGC 3' \| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| 3' ATTGT-CGTGACGGAGATCGGACCAGGAAGTT 5'
430	Arabidopsis thaliana	TATTCGACCCCCAGGTCGAG	alignment	plot	GSM278370-4061	AT2G44060.2 cdna:known chromosome:TAIR10:2:18226319:18228151:1 gene:AT2G44060 transcript:AT2G44060.2	2	753	0.03	41	20.5	3.5	5' TATTCGACCCCCAGGTCGAG 3' o\|\|\| \|\| \|\|\|\|\|o\|\|\|\|\|o 3' TTCAGTAA-CTCGGGGTTCAGCTTTAGTAAGT 5'
431	Arabidopsis thaliana	TTTGGATTGAAGGGAGCTCTT	alignment	plot	GSM278370-4061	AT3G11440.1 cdna:known chromosome:TAIR10:3:3602093:3605104:1 gene:AT3G11440 transcript:AT3G11440.1	2	1166	0.05	12	6.75	3.5	5' TTTGGATTGAAGGGAGCTCTT 3' \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|o 3' CTTATAACCTTACTTCCCTCGAGGTCGAAGTG 5'
432	Arabidopsis thaliana	GTAGTGTCGGTCGACACTGA	alignment	plot	GSM278370-4061	AT2G07733.1 cdna:pseudogene chromosome:TAIR10:2:3470315:3471873:-1 gene:AT2G07733 transcript:AT2G07733.1	2	413	0	2	2	3	5' GTAGTGTCGGTCG-ACACTGA 3' \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \| \| 3' GATGCATCACAGCCAGCGTGTAAGTTGTATCG 5'
433	Arabidopsis thaliana	GAAGTTGCGGTGAAGCGGCT	alignment	plot	GSM278370-4061	AT3G60280.1 cdna:known chromosome:TAIR10:3:22279664:22280675:-1 gene:AT3G60280 transcript:AT3G60280.1	2	104	0.01	2	2	3.5	5' GAAGTTGCGGTGAAG-CGGCT 3' o\|\|\|\|\|\|\|\|\|oo\|\|\| \|\|\|\| 3' GAACTTTCAACGCCGTTTCTGCCGTCCCTGAC 5'
434	Arabidopsis thaliana	CTGAAGTGTTTGGGGGGACTC	alignment	plot	GSM278370-4061	AT3G22890.1 cdna:known chromosome:TAIR10:3:8112723:8114992:1 gene:AT3G22890 transcript:AT3G22890.1	2	453	0.01	3	3	3	5' CTGAAGTGTTTGGGGGGACTC 3' \|\|\|\|\| \|\|\|\|\|\|o\|\|o\|\|\|\| 3' ATTTTACTTCTCAAACCTCCTTGAGCCTAAGA 5'
435	Arabidopsis thaliana	CTGGTTTAGTCACTTTCACTG	alignment	plot	GSM278370-4061	AT1G47128.1 cdna:known chromosome:TAIR10:1:17282825:17285670:-1 gene:AT1G47128 transcript:AT1G47128.1	2	577	0	12	12	3	5' CTGGTTTAGTCACTTTCACTG 3' \|\|\|\|\|\|\|\| \|\| \|o\|o\|\|\|\|\| 3' GCTAGACCAAATAAG-GGAGGTGACGAGGTTA 5'
436	Arabidopsis thaliana	CATCCAAGGTGTTTGTAGAAA	alignment	plot	GSM278370-4061	AT1G09750.1 cdna:known chromosome:TAIR10:1:3157501:3159148:1 gene:AT1G09750 transcript:AT1G09750.1	0	1494	0	37	37	4	5' CATCCAAGGTGTTTGTAGAAA 3' \|\|\| \|\|\|o\|\|o\| \|\|\|\|\|\|\| 3' GCAAGTATGTTTCATATACATCTTCCAGTTCG 5'
437	Arabidopsis thaliana	AAGCTCAGGAGGGATAGCGCC	alignment	plot	GSM278370-4061	AT5G57735.1 cdna:known chromosome:TAIR10:5:23394005:23394500:1 gene:AT5G57735 transcript:AT5G57735.1	2	429	0.01	6	6	3	5' AAGCTCAGGAGGGATAGCGCC 3' \|\|\|\|\|\|\|\|\|\|\|\|o\|\|\|\| o \| 3' GTATTTCGAGTCCTCCTTATCTTTGTTGTTTG 5'
438	Arabidopsis thaliana	TGCTCGATTGTCTGGTTGAG	alignment	plot	GSM278370-4061	AT5G23820.1 cdna:known chromosome:TAIR10:5:8031268:8033020:1 gene:AT5G23820 transcript:AT5G23820.1	1	758	0.01	27	27	4	5' TGCTCGATTGTCTGGTTGAG 3' \|\|\|\|\|\|\|\|\|\| \|\| \|\|\| \| 3' CTGTACGAGCTAAC-GAACAAGTATAGCGATA 5'
439	Arabidopsis thaliana	CTTCTCCAACATGGAGATTC	alignment	plot	GSM278370-4061	AT2G26500.2 cdna:known chromosome:TAIR10:2:11270218:11270874:1 gene:AT2G26500 transcript:AT2G26500.2	2	407	0.05	9	3	3.5	5' CTTCTCCAACATGGAGATTC 3' \|\|\|\|\| \|\|\|\|\| \|o\|\| \|\|\| 3' AGTCGAAGAAGTTGT-CTTCAAAGCTAAGCTT 5'
440	Arabidopsis thaliana	TAGAAGGGAGTGAGTTCTCG	alignment	plot	GSM278370-4061	AT5G38660.1 cdna:known chromosome:TAIR10:5:15473109:15475552:-1 gene:AT5G38660 transcript:AT5G38660.1	2	801	0.01	14	7	3	5' TAGAAGGGAGTGAGTTCTCG 3' \|\|\|\|\|\|o\|\|\|\|\|o\|\| \|\|\| 3' AGGTTTCTTCCTTCACTTAA-AGCGGACAGAA 5'
441	Arabidopsis thaliana	TGATTGAGCCGTGTCAATATC	alignment	plot	GSM278370-4061	AT4G00150.1 cdna:known chromosome:TAIR10:4:57199:59286:-1 gene:AT4G00150 transcript:AT4G00150.1	0	867	0	156	156	1	5' TGATTGAGCCGTGTCAATATC 3' \|\|\|\|\|\|\|\|\|\|\|o\|o\|\|\|\|\|\|\| 3' GACAACTAACTCGGCGCGGTTATAGGGGACTC 5'
442	Arabidopsis thaliana	TTGGCATTCTGTCCACCTCC	alignment	plot	GSM278370-4061	AT3G12120.2 cdna:known chromosome:TAIR10:3:3860445:3862880:-1 gene:AT3G12120 transcript:AT3G12120.2	2	153	0.01	5	2.5	3	5' TTGGCATTCTGTCCACCTCC 3' oo\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \| 3' CCTTGGCCGTAAGA-AGGTGGACGTGGGTACA 5'
443	Arabidopsis thaliana	TTGAGCCGTGCCAATATCACG	alignment	plot	GSM278370-4061	AT4G00150.1 cdna:known chromosome:TAIR10:4:57199:59286:-1 gene:AT4G00150 transcript:AT4G00150.1	2	864	0	11	11	2.5	5' TTGAGCCGTGCCAATATCACG 3' \|\|\|\|\|\|\|\|o\|\|\|\|\|\|\|\|\| \| 3' AACTAACTCGGCGCGGTTATAGGGGACTCGAT 5'
444	Arabidopsis thaliana	TGTGTTCTCAGGTCACCCCTT	alignment	plot	GSM278370-4061	AT2G28190.1 cdna:known chromosome:TAIR10:2:12014498:12016569:1 gene:AT2G28190 transcript:AT2G28190.1	2	487	0.02	23	23	4	5' TGTGTTCTCAGGTCACCCCTT 3' \|\|\| \|\|\|o\|\|\|\|\|\|\|\|\|\| o 3' AAATACA-AAGGGTCCAGTGGGCGTACTGCCG 5'
445	Arabidopsis thaliana	TCATGTTATGTGATTCTTCT	alignment	plot	GSM278370-4061	AT1G03360.1 cdna:known chromosome:TAIR10:1:824537:826358:1 gene:AT1G03360 transcript:AT1G03360.1	1	1001	0.03	3	3	4	5' TCATGTTATGTGATTCTTCT 3' \|\|\|\|\| \|\|\|\|\| \| \| \|\|\|\| 3' GTATAGTAC-ATACAGTTATAAGAAACTCAAT 5'
446	Arabidopsis thaliana	TCTGCATGCTCCTTGTTGATG	alignment	plot	GSM278370-4061	AT4G05060.1 cdna:known chromosome:TAIR10:4:2590065:2592163:-1 gene:AT4G05060 transcript:AT4G05060.1	2	1009	0	7	7	3.5	5' TCTGCATGCTCCTTGTTGATG 3' \|\|\|o\| \| \|\|\|\|\|\|\|\|\|\| \|\| 3' TCGCAGATG-AGGAGGAACAACAACACGTTCT 5'
447	Arabidopsis thaliana	GGCGGCGGCAAACTCTACTG	alignment	plot	GSM278370-4061	AT2G13360.1 cdna:known chromosome:TAIR10:2:5539240:5541358:-1 gene:AT2G13360 transcript:AT2G13360.1	2	1306	0.05	4	2	4	5' GGCGGCGGCAAACTCTACTG 3' \|\|\|o\|\| \|\|\|\| \|\|\|o\|\|\| 3' ATCTCCGTCGACGTT-GAGGTGAAGGGTAATG 5'
448	Arabidopsis thaliana	TGACAGAAGAAAGAGAGCAC	alignment	plot	GSM278370-4061	AT3G57920.1 cdna:known chromosome:TAIR10:3:21444321:21446035:-1 gene:AT3G57920 transcript:AT3G57920.1	1	855	0	3	3	1	5' TGACAGAAGAAAGAGAGCAC 3' \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| 3' TCAAACTGTCTTCTCTCTCTCGTGTCGAACTT 5'
449	Arabidopsis thaliana	TGGCGACGGTGGTGAGGACG	alignment	plot	GSM278370-4061	AT1G79730.1 cdna:known chromosome:TAIR10:1:30000538:30004005:-1 gene:AT1G79730 transcript:AT1G79730.1	2	1167	0.05	9	9	3.5	5' TGGCGACGGTGGTGAGGACG 3' \|\|\|\|o\|\|o\|\|\|\|\| \|\|o\|\| 3' TTATACCGTTGTCACCA-TCTTGAAGTTGGCC 5'
450	Arabidopsis thaliana	TCGTGGCCGATCTGCTGAGG	alignment	plot	GSM278370-4061	AT5G19780.1 cdna:known chromosome:TAIR10:5:6687074:6689171:1 gene:AT5G19780 transcript:AT5G19780.1	2	1310	0.05	3	1.5	4	5' TCGTGGCCGATCTGCTGAGG 3' \| \|\|\|\| \|\|\|\|\|o\| \|\|\|\|o 3' TTTGAACACCAGCTAGGC-ACTCTTGTGGAGA 5'
451	Arabidopsis thaliana	TCGAGCACATGACATCCAGA	alignment	plot	GSM278370-4061	AT1G67340.1 cdna:known chromosome:TAIR10:1:25230265:25231840:1 gene:AT1G67340 transcript:AT1G67340.1	0	867	0.02	6	6	4	5' TCGAGCACATGACATCCAGA 3' o\|\| \| \|\|\|\| \|\|\|\|\|\|\|o\| 3' CCACGGC-CATGTAATGTAGGTTTTAGTGATT 5'
452	Arabidopsis thaliana	AGTGTAGTTGTTGCCGGAGA	alignment	plot	GSM278370-4061	AT5G18430.1 cdna:known chromosome:TAIR10:5:6110255:6112029:-1 gene:AT5G18430 transcript:AT5G18430.1	1	235	0.03	2	2	4	5' AGTGTAGTTGTTGCCGGAGA 3' \|\|\|o\|\|\|\|\|\|oo\|\|o\|\| \| 3' CCGTGCACGTCAACAGTGGTCTATCAACAACA 5'
453	Arabidopsis thaliana	TGTGTTCTCAGGTCACCCCTT	alignment	plot	GSM278370-4061	AT3G27200.1 cdna:known chromosome:TAIR10:3:10043522:10044373:-1 gene:AT3G27200 transcript:AT3G27200.1	0	269	0	54	54	4	5' TG-TGTTCTCAGGTCACCCCTT 3' \|\| \|\|\|\|\|o\|\|\|\|\|\|\|\| \|\|o 3' TTGACTACAAGGGTCCAGTGTTGAGAACATAC 5'
454	Arabidopsis thaliana	TGGCGACGGTGGTGAGGACGA	alignment	plot	GSM278370-4061	AT1G29390.2 cdna:known chromosome:TAIR10:1:10286293:10288103:-1 gene:AT1G29390 transcript:AT1G29390.2	2	937	0.05	7	3.5	4	5' TGGCGACGGTGGTGAGGAC-GA 3' \|\|\|\| \|\|o\|\|\|\|oo\|\|o\|\| \|\| 3' TAATACCGATGTCACCGTTCTTGACTTAAGAC 5'
455	Arabidopsis thaliana	TTCTTCCGCCGCTTGGAGTC	alignment	plot	GSM278370-4061	AT2G23670.1 cdna:known chromosome:TAIR10:2:10063155:10063863:-1 gene:AT2G23670 transcript:AT2G23670.1	2	395	0.05	3	3	4	5' TTCTTCCGCCGCTTGGAGTC 3' o\|\| \|\|\|\|\|\|\|\|\|\| \|o\|\| 3' TGGAGAG-AGGCGGCGAAGATTAGGAAAGAGG 5'
456	Arabidopsis thaliana	TGACAGAAGATAGAGAGCAC	alignment	plot	GSM278370-4061	AT3G49780.1 cdna:known chromosome:TAIR10:3:18465679:18466376:1 gene:AT3G49780 transcript:AT3G49780.1	0	377	0.05	4	4	4	5' TGACAGAAGATAGAGAGCAC 3' o\|\|\|\|\|\|o\|o\|\|\|o\|\| \|\| 3' TCTGCTTGTCTTTTGTCTTTCATGATGTCACT 5'
457	Arabidopsis thaliana	TTTCGTTGTCTGTTCGACCTT	alignment	plot	GSM278370-4061	AT1G06180.1 cdna:known chromosome:TAIR10:1:1889408:1891158:1 gene:AT1G06180 transcript:AT1G06180.1	2	403	0.01	4	4	3	5' TTTCGTTGTCTGTTCGACCTT 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| 3' AATTAAAGCAACAGACAAGCAGGTCCGTTAAA 5'
458	Arabidopsis thaliana	GCTACCGGAGCATTCCATGC	alignment	plot	GSM278370-4061	AT3G13460.2 cdna:known chromosome:TAIR10:3:4384714:4388477:-1 gene:AT3G13460 transcript:AT3G13460.2	2	2155	0.02	3	0.75	4	5' GCTACCGGAGCATTCCATGC 3' \|\|\| \| \|\|\|\| \|\|\|\|\| \|\|\| 3' TTGTCGACGTCCTC-TAAGGAACGAGCGACTG 5'
459	Arabidopsis thaliana	TGACAGAAGAGAGTTAGCAC	alignment	plot	GSM278370-4061	AT2G33810.1 cdna:known chromosome:TAIR10:2:14305001:14306072:1 gene:AT2G33810 transcript:AT2G33810.1	2	797	0	4	4	2	5' TGACAGAAGAGAGTTAGCAC 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| 3' TCTGACTGTCTTCTCTCATTCGTTTCGGACAA 5'
460	Arabidopsis thaliana	TGCCTGGCTCCCTGTATGCC	alignment	plot	GSM278370-4061	AT1G77850.1 cdna:known chromosome:TAIR10:1:29272313:29275419:1 gene:AT1G77850 transcript:AT1G77850.1	0	1420	0	115	115	0.5	5' TGCCTGGCTCCCTGTATGCC 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\|o\|\|\|\|\| 3' TATAACGGACCGAGGGACGTACGGTCGTCCTT 5'
461	Arabidopsis thaliana	TCAATGCATTGAAAGTGACTA	alignment	plot	GSM278370-4061	AT4G24230.4 cdna:known chromosome:TAIR10:4:12566944:12568767:-1 gene:AT4G24230 transcript:AT4G24230.4	0	1269	0.01	4	0.8	4	5' TCAATGCATT-GAAAGTGACTA 3' \|\|\|\|\|\|\|\|o\| \|\|\|\| oo\|\|o\| 3' TATTAGTTACGTGATCTTTAGTTGGTCAGGAG 5'
462	Arabidopsis thaliana	TCAATGCATTGAAAGTGACTA	alignment	plot	GSM278370-4061	AT5G41170.1 cdna:known chromosome:TAIR10:5:16478486:16480584:-1 gene:AT5G41170 transcript:AT5G41170.1	1	892	0	9	2.25	1	5' TCAATGCATTGAAAGTGACTA 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| 3' AGCTAGTTACGTAACTTTCACTAATGTAGTCC 5'
463	Arabidopsis thaliana	GGAATCTTGATGATGCTGCAT	alignment	plot	GSM278370-4061	AT3G54990.1 cdna:known chromosome:TAIR10:3:20373718:20376522:-1 gene:AT3G54990 transcript:AT3G54990.1	0	976	0	3	3	1.5	5' GGAATCTTGATGATGCTGCAT 3' \|\|\|\|\|\|o\|\|\|\|\|\|\|\|\|\|\|\|\| 3' TTTCCCTTAGGACTACTACGACGTTGACAGAA 5'
464	Arabidopsis thaliana	TGAGAAGAAGAAGAAGAAAA	alignment	plot	GSM278370-4061	AT3G48160.2 cdna:known chromosome:TAIR10:3:17783331:17786099:1 gene:AT3G48160 transcript:AT3G48160.2	2	1540	0.02	21	0.0318599	1.5	5' TGAGAAGAAGAAGAAGAAAA 3' o\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' TCTTCTTCTTCTTCTTCTTCTTTTTCTTCTAG 5'
465	Arabidopsis thaliana	CCGACCCGAATACCCGAACG	alignment	plot	GSM278370-4061	AT5G57685.1 cdna:known chromosome:TAIR10:5:23366004:23366867:-1 gene:AT5G57685 transcript:AT5G57685.1	2	609	0	3	3	1.5	5' CCGACCCGAATACCCGAACG 3' \|\|o\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| 3' ACTAGGTTGGGCTTATGGGCT-GCGTTGGCCC 5'
466	Arabidopsis thaliana	TACCATCTCTTGAGGAACTTGG	alignment	plot	GSM278370-4061	AT1G07920.1 cdna:known chromosome:TAIR10:1:2454846:2457321:1 gene:AT1G07920 transcript:AT1G07920.1	2	1261	0.01	7	1.4	3	5' TACCATCTCTTGAGGAACTTGG 3' o\|\|\|\|\| \|\|\|\| \|o\|\|\|\|\|\|\|\| 3' CGTAGTGGTA-AGAAGTTCTTGAACCCGAGGA 5'
467	Arabidopsis thaliana	TTGGACTGAAGGGAGCTCC	alignment	plot	GSM278370-4061	AT1G53230.1 cdna:known chromosome:TAIR10:1:19849788:19851725:-1 gene:AT1G53230 transcript:AT1G53230.1	2	1195	0.01	4	4	3	5' TTGGACTGAAGGGAGCTCC 3' \|\|\|\|\|\|\|\|\|\|\|\| o\|o\|\| 3' CAATTACCTGACTTCCCCTGGGGAGACACTAT 5'
468	Arabidopsis thaliana	TTGGACTGAAGGGAGCTCCCT	alignment	plot	GSM278370-4061	AT1G53230.1 cdna:known chromosome:TAIR10:1:19849788:19851725:-1 gene:AT1G53230 transcript:AT1G53230.1	2	1195	0.05	4	4	4	5' TTGGACTGAAGGGAGCTCCCT 3' \|\|\|\|\|\|\|\|\|\|\|\| o\|o\|\| \| 3' CAATTACCTGACTTCCCCTGGGG-AGACACTA 5'
469	Arabidopsis thaliana	GACGAAGAAGATGGTGATGTGAT	alignment	plot	GSM278370-4061	AT1G21380.1 cdna:known chromosome:TAIR10:1:7485636:7488713:-1 gene:AT1G21380 transcript:AT1G21380.1	2	1743	0.01	3	3	3.5	5' GACGAAGAAGATGGTGATGTGAT 3' \|\| \|\|\|\|\|\|\|\|\|\|o\|\|\|\|\|\| \| 3' AAACCTCCTTCTTCTACTACTACAGGACCAAA 5'
470	Arabidopsis thaliana	TGGTGTCGATCGACACCAAGG	alignment	plot	GSM278370-4061	AT3G11830.2 cdna:novel chromosome:TAIR10:3:3732628:3736377:1 gene:AT3G11830 transcript:AT3G11830.2	2	1668	0.03	25	12.5	4	5' TGGTGTCGATCGACACCAAGG 3' o\|\|\| \|\|\| \|\|\|\|\|\|\| \|\|\|o 3' AAGTGCCAAAGC-AGCTGTGATTCTTACTCCG 5'
471	Arabidopsis thaliana	AGAGAAACCCAACAGCATCAT	alignment	plot	GSM278370-4061	AT1G69160.1 cdna:known chromosome:TAIR10:1:26000214:26001588:1 gene:AT1G69160 transcript:AT1G69160.1	0	1181	0.02	18	18	4	5' AGAGAAACCCAACAGCATCAT 3' o\|\|\|\|\|\|\|\|\|\| \|o\|\|\| \|\| 3' TTAGGTTCTTTGGGTTTTTGTA-TATTGAATA 5'
472	Arabidopsis thaliana	TCGGACCAGGCTTCATTCCCC	alignment	plot	GSM278370-4061	AT1G30490.1 cdna:known chromosome:TAIR10:1:10796135:10800961:-1 gene:AT1G30490 transcript:AT1G30490.1	2	806	0	23	11.5	2.5	5' TCGGACCAGGCTTCATTCCCC 3' o\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| 3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5'
473	Arabidopsis thaliana	TCGGACCAGGCTTCATCCCCC	alignment	plot	GSM278370-4061	AT1G30490.1 cdna:known chromosome:TAIR10:1:10796135:10800961:-1 gene:AT1G30490 transcript:AT1G30490.1	2	806	0	23	11.5	2.5	5' TCGGACCAGGCTTCATCCCCC 3' o\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAGAC 5'
474	Arabidopsis thaliana	AAACGACGTCGTTTCGTTCT	alignment	plot	GSM278370-4061	AT3G24500.1 cdna:known chromosome:TAIR10:3:8918679:8919308:1 gene:AT3G24500 transcript:AT3G24500.1	2	530	0.04	4	2	3.5	5' AAACGACGTCGTTTCGTTCT 3' \|\|\|\|\|\|\|o\|\|\|\|\|\| o\|o \| 3' TCTATTTGCTGTAGCAAATTAGTAAAGGGTTA 5'
475	Arabidopsis thaliana	TGAAAGTGACTACATCGGGGT	alignment	plot	GSM278370-4061	AT3G14067.1 cdna:known chromosome:TAIR10:3:4658198:4660784:-1 gene:AT3G14067 transcript:AT3G14067.1	2	1728	0.03	2	2	4	5' TGAAAGTGACTACATCGGGGT 3' \|\| \| \|\|\|\|\|o\| \|\|\|\|\|\|o\| 3' AACGACGTCCACTGGT-TAGCCCTACTCGAAA 5'
476	Arabidopsis thaliana	GAGGAGGAGGAGCACCACCGT	alignment	plot	GSM278370-4061	AT3G56340.1 cdna:known chromosome:TAIR10:3:20892129:20893443:-1 gene:AT3G56340 transcript:AT3G56340.1	2	473	0	9	9	3	5' GAGGAGGAGGAGCACCACCGT 3' \|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\| 3' GCTCCTCGTCGTCCTCGTGGTGGCCGTCCCGC 5'
477	Arabidopsis thaliana	TACCATCTCTTGAGGAACTTGG	alignment	plot	GSM278370-4061	AT1G07930.2 cdna:known chromosome:TAIR10:1:2458244:2460790:1 gene:AT1G07930 transcript:AT1G07930.2	2	1042	0.04	7	1.4	4	5' TACCATCTCTTGAGGAACTTGG 3' o\|\|\|\|\| \|\|\|\| \|o\|\|\| \|\|\|\| 3' CGTAGTGGTA-AGAAGTTCTTAAACCCGAGGA 5'
478	Arabidopsis thaliana	TGAAAGTGACTACATCGGGGT	alignment	plot	GSM278370-4061	AT1G63230.1 cdna:known chromosome:TAIR10:1:23450654:23452311:1 gene:AT1G63230 transcript:AT1G63230.1	2	929	0.02	2	2	3	5' TGAAAGTGACTACATCGGGGT 3' \|\|\|\|\|\|\| \|\| \|\|\|\|\|o\|\|o\| 3' CGTGACTTTCAATGTTGTAGTCCTAACTAAAC 5'
479	Arabidopsis thaliana	TGACAGAAGAAAGAGAGCAC	alignment	plot	GSM278370-4061	AT1G69170.1 cdna:known chromosome:TAIR10:1:26005068:26007263:1 gene:AT1G69170 transcript:AT1G69170.1	2	1307	0	6	6	1	5' TGACAGAAGAAAGAGAGCAC 3' \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| 3' CTCGACTGTCTTCTCTCTCTCGTGCTCATCTC 5'
480	Arabidopsis thaliana	TCGGACCAGGCTTCATTCCCC	alignment	plot	GSM278370-4061	AT2G34710.1 cdna:known chromosome:TAIR10:2:14639323:14644273:-1 gene:AT2G34710 transcript:AT2G34710.1	2	881	0	28	16.5	2.5	5' TCGGACCAGGCTTCATTCCCC 3' o\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| 3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5'
481	Arabidopsis thaliana	TCGGACCAGGCTTCATCCCCC	alignment	plot	GSM278370-4061	AT2G34710.1 cdna:known chromosome:TAIR10:2:14639323:14644273:-1 gene:AT2G34710 transcript:AT2G34710.1	2	881	0	28	16.5	2.5	5' TCGGACCAGGCTTCATCCCCC 3' o\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAGAC 5'
482	Arabidopsis thaliana	TCAATGCATTGAAAGTGACTA	alignment	plot	GSM278370-4061	AT4G24230.6 cdna:known chromosome:TAIR10:4:12566935:12568754:-1 gene:AT4G24230 transcript:AT4G24230.6	0	1255	0.03	4	0.8	4	5' TCAATGCATT-GAAAGTGACTA 3' \|\|\|\|\|\|\|\|o\| \|\|\|\| oo\|\|o\| 3' TATTAGTTACGTGATCTTTAGTTGGTCAGGAG 5'
483	Arabidopsis thaliana	GAGAAGATGAAGCTGTTCTG	alignment	plot	GSM278370-4061	AT3G56950.2 cdna:known chromosome:TAIR10:3:21078297:21079856:-1 gene:AT3G56950 transcript:AT3G56950.2	0	466	0.01	12	6	3.5	5' GAGAAGATGAAGCTGTTCTG 3' \|\|\|\|\|\|\|\|\|\|\|o\|\|\|o\| o 3' CTGCCTCTTCTACTTTGACGACTTCGGTGGCC 5'
484	Arabidopsis thaliana	TCGGACCAGGCTTCATTCCCC	alignment	plot	GSM278370-4061	AT3G48610.1 cdna:known chromosome:TAIR10:3:18011545:18014082:-1 gene:AT3G48610 transcript:AT3G48610.1	2	1621	0.01	2	2	3.5	5' TCGG-ACCAGGCTTCATTCCCC 3' \|\|\|\| \|\|\|\|o\|\|\|\|\|\|\|\| \|\| 3' AATAGCCGTGGTTCGAAGTAACGGAGAAATGA 5'
485	Arabidopsis thaliana	ACTCGACCACGAAGTCGAGT	alignment	plot	GSM278370-4061	AT4G01320.1 cdna:known chromosome:TAIR10:4:545796:549261:1 gene:AT4G01320 transcript:AT4G01320.1	0	506	0	29	29	3	5' ACTCGACCACGAA-GTCGAGT 3' \|\|\|\|\|\| \|\|\|\|\|\| \|\| \|\|\|\| 3' GCTCTGAGCTAGTGCTTTCAACTCATGTTTCT 5'
486	Arabidopsis thaliana	CTATCATCATCATCCTCGTAA	alignment	plot	GSM278370-4061	AT3G29075.1 cdna:known chromosome:TAIR10:3:11051489:11052694:-1 gene:AT3G29075 transcript:AT3G29075.1	2	784	0.02	20	4	3	5' CTATCATCATCATCCTCGTAA 3' \| \|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\| 3' AAGAG-TAGTAGTAGTAGTAACATTAATACGA 5'
487	Arabidopsis thaliana	TCATCTTCATCATCATCGTCA	alignment	plot	GSM278370-4061	AT2G31210.1 cdna:known chromosome:TAIR10:2:13296143:13298277:1 gene:AT2G31210 transcript:AT2G31210.1	1	1161	0.02	4	0.444444	3	5' TCATCTTCATCATCATCGTCA 3' \|\|\|\|\|\|\|\|\|\| \|o\|\|\| o\|\|\| 3' TAGTAGTAGAAGTAATGGTACTAGTAGGTTCA 5'
488	Arabidopsis thaliana	TGAGAAGACTCTGAAGGTGTG	alignment	plot	GSM278370-4061	AT1G75160.1 cdna:known chromosome:TAIR10:1:28209437:28211804:1 gene:AT1G75160 transcript:AT1G75160.1	0	909	0	5	5	4	5' TGAGAAGACTCTGAAGGTGTG 3' \|\|\|\|\|\| \| \|\|\|\|\| \|\|\|\|\| 3' CGAAACTCTTAT-AGACTGCCACAAAGATGAA 5'
489	Arabidopsis thaliana	TTCGCTTGCAGAGAGAAATCAC	alignment	plot	GSM278370-4061	AT2G39675.1 cdna:known chromosome:TAIR10:2:16537288:16538277:-1 gene:AT2G39675 transcript:AT2G39675.1	0	379	0	56	56	1.5	5' TTCGCTTGCAGAGAGAAATCAC 3' \|\|\|\|\|\|\|\| \|\|\|\|\|o\|\|\|\|\|\|\| 3' AGATAAGCGAACATCTCTTTTTAGTGTTGTTT 5'
490	Arabidopsis thaliana	CTGGGTTGTGATGTTCTGCA	alignment	plot	GSM278370-4061	AT3G59920.1 cdna:known chromosome:TAIR10:3:22134999:22138457:1 gene:AT3G59920 transcript:AT3G59920.1	2	1121	0	3	3	3	5' CTGGGTTGTGATGTTCTGCA 3' \|\|\|\|\| \|o\|\|\|\|\| o\|\|\|\|\| 3' CAAAGACCCCATACTACTGGACGTGACTCACT 5'
491	Arabidopsis thaliana	CGGCTCTGATACCAATTGATG	alignment	plot	GSM278370-4061	AT2G40000.1 cdna:known chromosome:TAIR10:2:16700510:16702028:-1 gene:AT2G40000 transcript:AT2G40000.1	2	297	0.04	4	4	4	5' CGGCTCTGATACCAATTGATG 3' \|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\| \| 3' CTTAGCCGAGACTACAGGTAACTCCTTTTAGT 5'
492	Arabidopsis thaliana	AAGAGAGAGGGTTTAAGGCTT	alignment	plot	GSM278370-4061	AT5G02600.1 cdna:known chromosome:TAIR10:5:585101:586897:-1 gene:AT5G02600 transcript:AT5G02600.1	2	221	0.05	5	2.5	3	5' AAGAGAGAGGGTTTAAGGCTT 3' \|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\| \|\| 3' CTGCTTCT-TCTCCCTAATTCCAAACCCCTTC 5'
493	Arabidopsis thaliana	TGCCTGGCTCCCTGTATGCC	alignment	plot	GSM278370-4061	AT4G30080.1 cdna:known chromosome:TAIR10:4:14703201:14706336:-1 gene:AT4G30080 transcript:AT4G30080.1	1	1519	0	6	6	1.5	5' TGCCTGGCTCCCTGTATGCC 3' \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| o\|\| 3' TAATACGGACCGAGGGACATTTGGGTGCCCTT 5'
494	Arabidopsis thaliana	GAGAGGAGAGAGTCTTTGTT	alignment	plot	GSM278370-4061	AT4G22670.1 cdna:known chromosome:TAIR10:4:11918080:11920910:1 gene:AT4G22670 transcript:AT4G22670.1	2	1610	0.02	12	12	2.5	5' GAGAGGAGAGAGTCTTTGTT 3' o\|\|\|\|o\|o\|\|\|\|\| \|\|\|\|\|\| 3' TTGCTTCTCTTTTCTCA-AAACAAGGACAATT 5'
495	Glycine max	CCGGAAGAGGAAAATTAAGCAA	alignment	plot	GSM848963_Cot25_unique_seq_count	GLYMA12G12210.5 cdna:novel chromosome:V1.0:Gm12:10353968:10359433:-1 gene:GLYMA12G12210 transcript:GLYMA12G12210.5	2	1143	0.04	16	1.77778	3.5	5' CCGGAAGAGGAA-AATTAAGCAA 3' \|o\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \| 3' TACTCGTCTTCTCCTTCTTAATTCGATAACAA 5'
496	Glycine max	TTGACAGAAGATAGAGAGCAC	alignment	plot	GSM848963_Cot25_unique_seq_count	GLYMA02G13371.2 cdna:novel chromosome:V1.0:Gm02:11670695:11677264:-1 gene:GLYMA02G13371 transcript:GLYMA02G13371.2	2	1399	0	36	7.2	1.5	5' TTGACAGAAGATAGAGAGCAC 3' o\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| 3' ACTAGACTGTCTTCTCTCTCTCGTGTCGAACT 5'
497	Glycine max	ACGGACACCGAACACGACACGGAC	alignment	plot	GSM848963_Cot25_unique_seq_count	GLYMA17G05840.3 cdna:known chromosome:V1.0:Gm17:4116203:4118256:-1 gene:GLYMA17G05840 transcript:GLYMA17G05840.3	2	1309	0	26	26	2	5' ACGGACACCGAACACGACACGGAC 3' \|\|\|o\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|o\|\|\| 3' GCTGTGCTTGTGGCCTGTGCTGTGTCTGTGAA 5'
498	Glycine max	TGAGAGAAAGCCATGACTTAC	alignment	plot	GSM848963_Cot25_unique_seq_count	GLYMA08G27941.2 cdna:novel chromosome:V1.0:Gm08:22208426:22211736:-1 gene:GLYMA08G27941 transcript:GLYMA08G27941.2	0	190	0	18	9	1	5' TGAGAGAAAGCCATGACTTAC 3' \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| 3' CTCTAGTCTCTTTCGGTACTGAATGTTTGTGT 5'
499	Glycine max	TTTGGATTGAAGGGAGCTC	alignment	plot	GSM848963_Cot25_unique_seq_count	GLYMA06G47000.2 cdna:novel chromosome:V1.0:Gm06:49543622:49548924:-1 gene:GLYMA06G47000 transcript:GLYMA06G47000.2	0	1343	0	60	15	1	5' TTTGGATTGAAGGGAGCTC 3' \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| 3' CCTTAAACCTCACTTCCCTCGAGACTGAAGTG 5'
500	Glycine max	CGGACCAGGCTTCATTCCCGT	alignment	plot	GSM848963_Cot25_unique_seq_count	GLYMA01G40900.3 cdna:novel chromosome:V1.0:Gm01:52553730:52560423:-1 gene:GLYMA01G40900 transcript:GLYMA01G40900.3	2	426	0.05	20	10	3.5	5' CGGACCAGGCTTCATTCCCGT 3' \| \|\|\| \|\|\|\|\|\|\|\|\|\|\| \|o\| 3' TCACGACTGTTCCGAAGTAAGAGTAGCATCTT 5'

1

Arabidopsis thaliana

TTGAGTTGTATGTGAATACG

alignment

plot

GSM278334-4059

AT1G67880.1 cdna:known chromosome:TAIR10:1:25453921:25455735:-1 gene:AT1G67880 transcript:AT1G67880.1

2

1582

0.02

2

1

3

5'     TTGAGTTGTATGTGAATACG         3'
       ||o|o||||||o|| |o|||
3' ATTTAATTTAACATATACATGTGCTTTCACTG 5'

3

Arabidopsis thaliana

TTCCACAGCTTTCTTGAACTT

alignment

plot

GSM278334-4059

AT5G61440.1 cdna:known chromosome:TAIR10:5:24707500:24708893:1 gene:AT5G61440 transcript:AT5G61440.1

0

719

0

5

2.5

5'     TTCCACAGCTTTCTTGAACTT        3'
       |o| || ||||||||||||||
3' GAATAGGTTG-CGAAAGAACTTGAATAACTAT 5'

5

Arabidopsis thaliana

TTGACAGAAGATAGAGAGCAC

alignment

plot

GSM278334-4059

AT1G27360.3 cdna:known chromosome:TAIR10:1:9501777:9503869:1 gene:AT1G27360 transcript:AT1G27360.3

2

1251

0

3

0.75

1

5'     TTGACAGAAGATAGAGAGCAC        3'
       ||||||||||| |||||||||
3' CTCCAACTGTCTTCTCTCTCTCGTGCCACCTA 5'

7

Arabidopsis thaliana

TCTATCTTCTTCGTCTTCGAT

alignment

plot

GSM278334-4059

AT1G76780.1 cdna:known chromosome:TAIR10:1:28816641:28822256:1 gene:AT1G76780 transcript:AT1G76780.1

2

189

0.04

4

0.00569801

3

5'     TCTATCTTCTTCGTCTTCGAT        3'
       ||| |||||||| ||o||o||
3' AAGAAGA-AGAAGAAGAAGGAGTTAGAATTTA 5'

9

Arabidopsis thaliana

AATTGGGTTTATGCTAGAGTT

alignment

plot

GSM278334-4059

AT1G56280.2 cdna:novel chromosome:TAIR10:1:21072855:21074877:-1 gene:AT1G56280 transcript:AT1G56280.2

2

1015

0.01

21

10.5

3.5

5'     AATTGGGTTTATGCTAGAGTT        3'
       ||| |||||||||||| || o
3' GTGGTTATCCCAAATACGATGTCTGTTCTCCT 5'

11

Arabidopsis thaliana

GTCATGGGGTATGATCGAATG

alignment

plot

GSM278334-4059

AT5G52060.1 cdna:known chromosome:TAIR10:5:21152214:21154244:-1 gene:AT5G52060 transcript:AT5G52060.1

1

1453

0

3

2

5'     GTCATGGGGT-ATGATCGAATG       3'
       ||||o|||o| |||||||||||
3' ACCGCAGTGCCCTACTACTAGCTTACAAAGGG 5'

13

Arabidopsis thaliana

TCCGGAGGGATTCCTTCCTT

alignment

plot

GSM278334-4059

AT4G05320.5 cdna:known chromosome:TAIR10:4:2718170:2720133:1 gene:AT4G05320 transcript:AT4G05320.5

2

648

0.01

5

0.833333

0

5'     TCCGGAGGGATTCCTTCCTT         3'
       ||||||||||||||||||||
3' GACCAGGCCTCCCTAAGGAAGGAATAGGACCT 5'

15

Arabidopsis thaliana

GAACCCAAGACCTCACCCTT

alignment

plot

GSM278334-4059

AT5G22650.1 cdna:known chromosome:TAIR10:5:7534017:7536273:1 gene:AT5G22650 transcript:AT5G22650.1

2

1045

0.02

3

1.5

3

5'     GAACCCAAGACCTCACCCTT         3'
       o|||||||o||||| || ||
3' AGCTTTTGGGTTTTGGAGAGG-AACTAGGTGC 5'

17

Arabidopsis thaliana

TGTCTTCATCGTCATCACAA

alignment

plot

GSM278334-4059

AT5G37430.1 cdna:known chromosome:TAIR10:5:14842430:14844308:1 gene:AT5G37430 transcript:AT5G37430.1

1

1756

0.04

12

0.8

4

5'     TGTCTTCATCGTCATCACAA         3'
       oo|| |||o|o||||||| |
3' AGTAGTAGTAGTGGTAGTAGTGGTAGTAGTAG 5'

19

Arabidopsis thaliana

TCCAAAGGGATCGCATTGATCC

alignment

plot

GSM278334-4059

AT3G26810.1 cdna:known chromosome:TAIR10:3:9867845:9870640:1 gene:AT3G26810 transcript:AT3G26810.1

0

2010

0

6

2

5'     TCCAAAGGGATCGCATTGATCC       3'
       |||||||||||||||||| | |
3' CTGTAGGTTTCCCTAGCGTAACAAAGTATGAA 5'

21

Arabidopsis thaliana

AGAGAATGAGGTTGAGCCAA

alignment

plot

GSM278334-4059

AT4G13590.2 cdna:novel chromosome:TAIR10:4:7901251:7904025:-1 gene:AT4G13590 transcript:AT4G13590.2

0

1292

0.02

4

2

4

5'     AGAGAATGAGGTTG-AGCCAA        3'
       |o|||||| ||o|| ||| ||
3' GAGGTTTCTTACACCGACGTCGTTTTTGATTC 5'

23

Arabidopsis thaliana

TCCGAATCAGAATCGGAGTC

alignment

plot

GSM278334-4059

AT3G24040.1 cdna:known chromosome:TAIR10:3:8680877:8683289:-1 gene:AT3G24040 transcript:AT3G24040.1

1

1250

0.02

2

3.5

5'     TCCGAATCAGAATCGGAGTC         3'
       || |||o|||||o||| |o|
3' GGATAGCCTTGGTCTTGGCC-CGGCTTCCTAT 5'

25

Arabidopsis thaliana

TCTTCTTCGTCGCCATTACT

alignment

plot

GSM278334-4059

AT4G38590.1 cdna:known chromosome:TAIR10:4:18036092:18040928:1 gene:AT4G38590 transcript:AT4G38590.1

0

2604

0.01

3

0.145833

4

5'     TCTTCTTCGTCGCCATTACT         3'
       |||||||| ||o |||o| |
3' AAGAAGAAGAAGAAGTAGTAGT-AGAAGTAGC 5'

27

Arabidopsis thaliana

CGGATCCGGATACGGATCCGG

alignment

plot

GSM278334-4059

AT5G43850.1 cdna:known chromosome:TAIR10:5:17627182:17629159:-1 gene:AT5G43850 transcript:AT5G43850.1

2

390

0.01

2

3.5

5'     CGGATCCGGATACGGATCCGG        3'
        | ||||o|||||||||||oo
3' TCCAACGTAGGTCTATGCCTAGGTTGCTAGTA 5'

29

Arabidopsis thaliana

TGTCTTCATCGTCATCACAA

alignment

plot

GSM278334-4059

AT1G21722.1 cdna:known chromosome:TAIR10:1:7628456:7629252:1 gene:AT1G21722 transcript:AT1G21722.1

1

415

0.01

2

0.392857

3

5'     TGTCTTCATCGTCATCACAA         3'
       oo|| ||||||||||||| |
3' AGTTGTAGTAGTAGCAGTAGTGATAATAGTAG 5'

31

Arabidopsis thaliana

TCATTGAGTGCAGCGTTGATG

alignment

plot

GSM278334-4059

AT4G23130.2 cdna:known chromosome:TAIR10:4:12117598:12120134:-1 gene:AT4G23130 transcript:AT4G23130.2

0

1964

0

2

1

4

5'     TCATTGAGTGCAGCGTTGATG        3'
       | ||o|| ||||||o|oo|||
3' TATCATTAGCT-ACGTCGTAGTTACCTTGTTT 5'

33

Arabidopsis thaliana

GTATAGCATAATGAGCAATCA

alignment

plot

GSM278334-4059

AT3G12120.1 cdna:known chromosome:TAIR10:3:3860285:3863050:-1 gene:AT3G12120 transcript:AT3G12120.1

2

1451

0.04

6

3

5'     GTATAGCATAATGAGCAATCA        3'
       oo|||o||||||||||| o||
3' AGGGTGTATTGTATTACTCGTCGGTTTTACAG 5'

35

Arabidopsis thaliana

TTGAGAGCAACAAGACATAAT

alignment

plot

GSM278334-4059

AT4G13495.2 cdna:known chromosome:TAIR10:4:7842967:7846774:1 gene:AT4G13495 transcript:AT4G13495.2

2

756

0

2

1

2

5'     TTGAGAGCAACAAGACATAAT        3'
       |||||| |||||||||||||
3' CGATAACTCTAGTTGTTCTGTATTCTTTCTCA 5'

37

Arabidopsis thaliana

TCCAAAGGGATCGCATTGATCC

alignment

plot

GSM278334-4059

AT1G12820.1 cdna:known chromosome:TAIR10:1:4368760:4371293:-1 gene:AT1G12820 transcript:AT1G12820.1

0

1895

0

8

2

5'     TCCAAAGGGATCGCATTGATCC       3'
       |||||||||||||||||| | |
3' CTGTAGGTTTCCCTAGCGTAACAAAGCATGGA 5'

39

Arabidopsis thaliana

AAACGACGTCGTTGGTGATT

alignment

plot

GSM278334-4059

AT5G40350.1 cdna:known chromosome:TAIR10:5:16138544:16141134:-1 gene:AT5G40350 transcript:AT5G40350.1

2

671

0.03

2

3

5'     AAACGACGTCGTTGGTGATT         3'
       | ||||||||||||| || |
3' CAACTATGCTGCAGCAACCTCTTATGTATAGG 5'

41

Arabidopsis thaliana

CTATCATCATCATCCTCGTAA

alignment

plot

GSM278334-4059

AT2G11910.2 cdna:known chromosome:TAIR10:2:4805684:4807319:-1 gene:AT2G11910 transcript:AT2G11910.2

2

509

0.04

3

1.5

3.5

5'     CTATCATCATCATCCTCGTAA        3'
       | ||||||||| |||||o| |
3' TGTAG-TAGTAGTAGAAGGAGTAGTAGCAGAA 5'

43

Arabidopsis thaliana

TTCGAGGCCTATTAAACCTCTG

alignment

plot

GSM278334-4059

AT5G54770.1 cdna:known chromosome:TAIR10:5:22246592:22248332:1 gene:AT5G54770 transcript:AT5G54770.1

2

1179

0.03

26

4

5'     TTCGAGGCCTATTAAACCTCTG       3'
       |||o||o| |||||||| o||o
3' TTTCAAGTTCTGTATAATTTGTGGATTTGAGG 5'

45

Arabidopsis thaliana

TCGACCTCGTGGTCGAGTGG

alignment

plot

GSM278334-4059

AT5G61580.2 cdna:known chromosome:TAIR10:5:24761091:24764014:1 gene:AT5G61580 transcript:AT5G61580.2

1

1816

0

2

4

5'     TCGACCTCGTGGTCGAG-TGG        3'
       ||o|||||o| || ||| |||
3' GTAGAGTTGGAGTAGCAACTCTACCTACAACT 5'

47

Arabidopsis thaliana

TGACCTGCCAAAGGAGAGTTG

alignment

plot

GSM278334-4059

AT1G02330.1 cdna:known chromosome:TAIR10:1:462075:463612:-1 gene:AT1G02330 transcript:AT1G02330.1

2

984

0.03

2

4

5'     TGACCTGCCAAAGGAGAGTTG        3'
       |o|| | |||||o||| ||||
3' TTAGATTGTA-GGTTTTCTCACAACAATGGGC 5'

49

Arabidopsis thaliana

AGAATCCTGATGATGCTGC

alignment

plot

GSM278334-4059

AT1G53400.1 cdna:known chromosome:TAIR10:1:19924752:19926631:1 gene:AT1G53400 transcript:AT1G53400.1

1

677

0.04

2

3.5

5'     AGAATCCTGATGATGCTGC          3'
       ||||||||o|||  o||o|
3' CGTCTCTTAGGATTACATTGATGAATGTGTGT 5'

51

Arabidopsis thaliana

TGAGAAGAAGAAGAAGAAAA

alignment

plot

GSM278334-4059

AT2G40520.1 cdna:known chromosome:TAIR10:2:16923068:16925914:1 gene:AT2G40520 transcript:AT2G40520.1

2

1787

0.04

6

0.0093439

1.5

5'     TGAGAAGAAGAAGAAGAAAA         3'
        o||||||||||||||||||
3' TCTTCTTCTTCTTCTTCTTCTTTTTCTTTTTG 5'

53

Arabidopsis thaliana

TTGACAGAAGATAGAGAGCAC

alignment

plot

GSM278334-4059

AT5G43270.2 cdna:known chromosome:TAIR10:5:17360305:17363773:-1 gene:AT5G43270 transcript:AT5G43270.2

2

1160

0

2

0.666667

1

5'     TTGACAGAAGATAGAGAGCAC        3'
       ||||||||||| |||||||||
3' CTTAAACTGTCTTCTCTCTCTCGTGGTAGTTC 5'

55

Arabidopsis thaliana

TATGAGAGTATTATAAGTCAC

alignment

plot

GSM278334-4059

AT2G33120.2 cdna:known chromosome:TAIR10:2:14043459:14045543:-1 gene:AT2G33120 transcript:AT2G33120.2

2

1018

0.02

2

0.666667

3

5'     TATGAGAGTATTATAAGTCAC        3'
       |||||||o||| | ||o||||
3' TATCATACTCTTATA-TCTTTAGTGTTTTTGT 5'

57

Arabidopsis thaliana

TCCTCCACCACCGAGAGCATT

alignment

plot

GSM278334-4059

AT2G32690.1 cdna:known chromosome:TAIR10:2:13863717:13864596:-1 gene:AT2G32690 transcript:AT2G32690.1

2

615

0.03

7

1.75

3.5

5'     TCCTCCACCACCGAGAGCATT        3'
       |||||||||||| |o || ||
3' CTGGAGGAGGTGGTGG-TTACGGAAATGGTTT 5'

59

Arabidopsis thaliana

AACCGGATTCTGGTTTGGTTA

alignment

plot

GSM278334-4059

AT5G01530.1 cdna:known chromosome:TAIR10:5:208937:210445:1 gene:AT5G01530 transcript:AT5G01530.1

2

444

0

2

3.5

5'     AACCGGATTCTGGTTTGGTTA        3'
       | ||o|||||||||o|o|| |
3' AGAATCGGTCTAAGACCAGATCACTTAGCTAT 5'

61

Arabidopsis thaliana

AACGGCGTGAGTGCCGTAGA

alignment

plot

GSM278334-4059

AT1G76080.1 cdna:known chromosome:TAIR10:1:28547786:28549419:-1 gene:AT1G76080 transcript:AT1G76080.1

2

957

0.01

3

3.5

5'     AACGGCGTGAGTGCCGTAGA         3'
       ||| || |||||o||| |||
3' GTGCTTG-CGGACTCATGGCTTCTTAGAGAGG 5'

63

Arabidopsis thaliana

TCTTCTTCGTCGCCATTACT

alignment

plot

GSM278334-4059

AT4G27310.1 cdna:known chromosome:TAIR10:4:13675638:13676910:1 gene:AT4G27310 transcript:AT4G27310.1

1

586

0.02

2

4

5'     TCTTCTTCGTCGCCATTACT         3'
       |||||||| ||o |||o| |
3' GAGTAGAAGAAGGAGTAGTAGT-AGCATTCTG 5'

65

Arabidopsis thaliana

TCTATCTTCTTCGTCTTCGAT

alignment

plot

GSM278334-4059

AT1G77122.1 cdna:known chromosome:TAIR10:1:28977357:28978743:-1 gene:AT1G77122 transcript:AT1G77122.1

2

321

0.01

4

0.00569801

2.5

5'     TCTATCTTCTTCGTCTTCGAT        3'
       ||| |||||||| |||||o||
3' AAGAAGA-AGAAGAAGAAGAAGTTACTAGTTG 5'

67

Arabidopsis thaliana

TCATCATCATCATCATCTTCT

alignment

plot

GSM278334-4059

AT5G08600.1 cdna:known chromosome:TAIR10:5:2786267:2789871:1 gene:AT5G08600 transcript:AT5G08600.1

2

330

0.01

4

0.0113636

0

5'     TCATCATCATCATCATCTTCT        3'
       |||||||||||||||||||||
3' TAGTAGTAGTAGTAGTAGTAGAAGACTGAGGT 5'

69

Arabidopsis thaliana

AGAAGAAGAGGCGTCCTCCT

alignment

plot

GSM278334-4059

AT4G24100.1 cdna:known chromosome:TAIR10:4:12515076:12519841:1 gene:AT4G24100 transcript:AT4G24100.1

0

2677

0

2

3.5

5'     AGAAGAAGAGGCGTCCTCCT         3'
       |o|||||||| | | |||||
3' TGGGTTTTCTTCTC-GAAAGAGGAAATAGAGT 5'

71

Arabidopsis thaliana

CACCATCTTCGTTGCTCTCT

alignment

plot

GSM278334-4059

AT2G38690.1 cdna:known chromosome:TAIR10:2:16176631:16177754:-1 gene:AT2G38690 transcript:AT2G38690.1

1

445

0

3

5'     CACCATCTTCGTTGCTCTCT         3'
        |||||||||o|o| |||||
3' ACAATTGGTAGAAGTAGC-AGAGACATAGTCA 5'

73

Arabidopsis thaliana

TAGTCCGGTTTTGGATACGTG

alignment

plot

GSM278334-4059

AT1G42970.1 cdna:known chromosome:TAIR10:1:16127381:16129843:1 gene:AT1G42970 transcript:AT1G42970.1

2

1585

0.04

10

4

5'     TAGTCCGGTTTTGGATACGTG        3'
       |||| ||o|||o|o||| ||o
3' ACGTATCATGCTAAAGCTTATTCATTGAGTAC 5'

75

Arabidopsis thaliana

ACCCAATCTCTACTTCAGTCT

alignment

plot

GSM278334-4059

AT2G11890.1 cdna:known chromosome:TAIR10:2:4802793:4804358:1 gene:AT2G11890 transcript:AT2G11890.1

2

486

0.05

2

1

3.5

5'     ACCCAATCTCTACTTCAGTCT        3'
       || |||||||o ||||| |||
3' GTTATGAGTTAGAGGAGAAGT-AGAAGGAGGT 5'

77

Arabidopsis thaliana

AAGCTCAGGAGGGATAGCGCC

alignment

plot

GSM278334-4059

AT5G57735.1 cdna:known chromosome:TAIR10:5:23394005:23394500:1 gene:AT5G57735 transcript:AT5G57735.1

0

429

0

3

5'     AAGCTCAGGAGGGATAGCGCC        3'
       ||||||||||||o|||| o |
3' GTATTTCGAGTCCTCCTTATCTTTGTTGTTTG 5'

79

Arabidopsis thaliana

TTTGGATTGAAGGGAGCTCTT

alignment

plot

GSM278334-4059

AT2G21600.1 cdna:known chromosome:TAIR10:2:9242801:9244833:1 gene:AT2G21600 transcript:AT2G21600.1

1

914

0.03

5

4

5'     TTTGGATTGAAGGGAGCTCTT        3'
       o|||||||o||||||o||  o
3' CCATGAACCTAATTTCCCTTGATTGTTTCTTG 5'

81

Arabidopsis thaliana

TGCAGCTGCAGCATCATCAA

alignment

plot

GSM278334-4059

AT2G26500.2 cdna:known chromosome:TAIR10:2:11270218:11270874:1 gene:AT2G26500 transcript:AT2G26500.2

1

370

0.04

18

9

3.5

5'     TGCAGCTGCAGCATCATCAA         3'
       | ||o|||||o||o|| |||
3' GCTTAGGTTGACGTTGTGGTTGTTCTCATTCT 5'

83

Arabidopsis thaliana

TCATCATCATCATCATCTTCT

alignment

plot

GSM278334-4059

AT3G29000.1 cdna:known chromosome:TAIR10:3:11005779:11006414:1 gene:AT3G29000 transcript:AT3G29000.1

2

215

0.03

4

0.0113636

1

5'     TCATCATCATCATCATCTTCT        3'
       ||||||||||||||||| |||
3' TAGTAGTAGTAGTAGTAGTAGTAGAAGAACAA 5'

85

Arabidopsis thaliana

TCATCATCATCATCATCTTCT

alignment

plot

GSM278334-4059

AT3G29000.1 cdna:known chromosome:TAIR10:3:11005779:11006414:1 gene:AT3G29000 transcript:AT3G29000.1

2

212

0

4

0.0113636

0

5'     TCATCATCATCATCATCTTCT        3'
       |||||||||||||||||||||
3' TAGTAGTAGTAGTAGTAGTAGAAGAACAAACC 5'

87

Arabidopsis thaliana

GTATAGCATAATGAGCAATCA

alignment

plot

GSM278334-4059

AT3G12120.2 cdna:known chromosome:TAIR10:3:3860445:3862880:-1 gene:AT3G12120 transcript:AT3G12120.2

2

1412

0.04

6

3

5'     GTATAGCATAATGAGCAATCA        3'
       oo|||o||||||||||| o||
3' AGGGTGTATTGTATTACTCGTCGGTTTTACAG 5'

89

Arabidopsis thaliana

TGGTGTCGATCGACACCAAGG

alignment

plot

GSM278334-4059

AT3G11830.1 cdna:known chromosome:TAIR10:3:3732661:3736374:1 gene:AT3G11830 transcript:AT3G11830.1

2

1641

0.03

2

1

4

5'     TGGTGTCGATCGACACCAAGG        3'
       o||| ||| ||||||| |||o
3' AAGTGCCAAAGC-AGCTGTGATTCTTACTCCG 5'

91

Arabidopsis thaliana

TCCTTGAAAGGTTCATTATC

alignment

plot

GSM278334-4059

AT5G37352.1 cdna:pseudogene chromosome:TAIR10:5:14796126:14797001:1 gene:AT5G37352 transcript:AT5G37352.1

1

585

0.03

3

1.5

4

5'     TCCTTGAAAGGTTCATTATC         3'
       ||| || ||| |o|||o|||
3' GGTAAGGTACATTCGAGGTAGTAGGTGGTGTA 5'

93

Arabidopsis thaliana

AGTGGCTGCAGCTGCAGCGAC

alignment

plot

GSM278334-4059

AT5G20020.1 cdna:known chromosome:TAIR10:5:6762724:6764671:1 gene:AT5G20020 transcript:AT5G20020.1

2

720

0.02

2

3.5

5'     AGTGGCTGCAGCTGCAGCGAC        3'
       || ||||| |||||||||o |
3' CCCCTCTCCGAC-TCGACGTCGTCGACGTTCT 5'

95

Arabidopsis thaliana

ACTGTATATATGTAAGTGACA

alignment

plot

GSM278334-4059

AT2G17230.1 cdna:known chromosome:TAIR10:2:7494536:7496016:-1 gene:AT2G17230 transcript:AT2G17230.1

1

1239

0.04

3

4

5'     ACTGTATATATGTAAGTGA-CA       3'
       ||| |||||||o|||| o| ||
3' AATTTGAAATATATATATTCTTTAGTATTTCA 5'

97

Arabidopsis thaliana

TGAGAAGAAGAAGAAGAAAA

alignment

plot

GSM278334-4059

AT3G15140.1 cdna:known chromosome:TAIR10:3:5099532:5101781:-1 gene:AT3G15140 transcript:AT3G15140.1

2

234

0.03

6

0.0093439

1.5

5'     TGAGAAGAAGAAGAAGAAAA         3'
        o||||||||||||||||||
3' TCTTCTTCTTCTTCTTCTTCTTTTCAGTCTCC 5'

99

Arabidopsis thaliana

TACCAACCTTTCATCGTTCCC

alignment

plot

GSM278334-4059

AT3G60245.1 cdna:known chromosome:TAIR10:3:22268746:22270006:1 gene:AT3G60245 transcript:AT3G60245.1

2

77

0.05

2

4

5'     TACCAACCTTTCATCGTTCCC        3'
       | |||||| ||| |||||| |
3' TGCTAAGGTTGG-AAGAAGCAAGAGAAGCGGT 5'

101

Arabidopsis thaliana

ACTCGGCCAGGTAGTCGAGTG

alignment

plot

GSM278334-4059

AT1G04270.1 cdna:known chromosome:TAIR10:1:1141604:1143053:-1 gene:AT1G04270 transcript:AT1G04270.1

2

460

0

2

1

3.5

5'     ACTCGGCCAGGTAGTCGAGTG        3'
       ||||o|||||||||| || oo
3' CTCTTGAGTCGGTCCATCA-CTGGTTAGTAGA 5'

103

Arabidopsis thaliana

TTAGCTGAAGAAGCAGAGGAG

alignment

plot

GSM278334-4059

AT3G22220.1 cdna:known chromosome:TAIR10:3:7839616:7842874:-1 gene:AT3G22220 transcript:AT3G22220.1

0

2715

0.03

2

4

5'     TTAGCTGAAGAAGCAGAGGAG        3'
       | || |o|||||| |||o|||
3' AATGACTC-ATTTCTTCTTCTTCTCCTTCTTC 5'

105

Arabidopsis thaliana

CTATCATCATCATCCTCGTAA

alignment

plot

GSM278334-4059

AT5G40520.2 cdna:known chromosome:TAIR10:5:16231254:16234316:-1 gene:AT5G40520 transcript:AT5G40520.2

2

1338

0.05

4

0.0113636

3.5

5'     CTATCATCATCATCCTCGTAA        3'
       | |||||||||||| ||o| |
3' AGTAG-TAGTAGTAGTAGTAGTAGTAATAGTA 5'

107

Arabidopsis thaliana

AGCCATCATCATGTTCCTGT

alignment

plot

GSM278334-4059

AT2G24500.1 cdna:known chromosome:TAIR10:2:10401035:10402934:-1 gene:AT2G24500 transcript:AT2G24500.1

1

1167

0.02

2

4

5'     AGCCATCATCATGTTCCTGT         3'
       | |||||||| ||| ||||
3' GATCTGGGTAGTAGAACATGGACCTCCAATCT 5'

109

Arabidopsis thaliana

TTTTGGAAATTTGTCCTTACG

alignment

plot

GSM278334-4059

AT3G09360.1 cdna:known chromosome:TAIR10:3:2873449:2878591:1 gene:AT3G09360 transcript:AT3G09360.1

2

1953

0.04

2

3.5

5'     TTTTGGAAATTTGTCCTTACG        3'
       |||||o||||o|||| |o| |
3' CGGCAAAACTTTTAGACAGAAGTACAGCATAC 5'

111

Arabidopsis thaliana

TCCTCTGTATCTTCGTTGTCA

alignment

plot

GSM278334-4059

AT4G10710.1 cdna:known chromosome:TAIR10:4:6601989:6606354:-1 gene:AT4G10710 transcript:AT4G10710.1

2

3287

0.03

2

3.5

5'     TCCTCTGTATCTTCGTTGTCA        3'
       |||||| | ||o|||o|o|||
3' GAGAAGGAGAGA-AGGAGCGATAGTCTGAGTT 5'

113

Arabidopsis thaliana

TCATCATCATCATCATCTTCT

alignment

plot

GSM278334-4059

AT1G66620.1 cdna:known chromosome:TAIR10:1:24852806:24854153:-1 gene:AT1G66620 transcript:AT1G66620.1

2

999

0

4

0.0113636

0

5'     TCATCATCATCATCATCTTCT        3'
       |||||||||||||||||||||
3' TAGTAGTAGTAGTAGTAGTAGAAGAAGAAGAA 5'

115

Arabidopsis thaliana

GACGAAGAAGATGGTGATGTGAT

alignment

plot

GSM278334-4059

AT5G66800.1 cdna:known chromosome:TAIR10:5:26671423:26672514:1 gene:AT5G66800 transcript:AT5G66800.1

2

375

0.03

6

0.0093439

4

5'     GACGAAGAAGATGGTGATGTGAT      3'
       || ||||||||||o||| o |||
3' TCTTCTTCTTCTTCTACTACTCTTCTAACCAC 5'

117

Arabidopsis thaliana

TAACTAAACATTGGTGTAGTA

alignment

plot

GSM278334-4059

AT2G31585.1 cdna:known chromosome:TAIR10:2:13446002:13446729:1 gene:AT2G31585 transcript:AT2G31585.1

2

647

0.03

2

0.666667

3.5

5'     TAACTAAACATTGGTGTAGTA        3'
       o|||||||||| o|||||o |
3' TTAAGTTGATTTGTATTCACATTCTGAAAAGT 5'

119

Arabidopsis thaliana

GAGAAGATGAAGCTGTTCTG

alignment

plot

GSM278334-4059

AT2G32500.1 cdna:known chromosome:TAIR10:2:13794426:13797227:-1 gene:AT2G32500 transcript:AT2G32500.1

1

899

0.03

2

4

5'     GAGAAGATGAAGCTGTTCTG         3'
       ||||| ||||||   |||||
3' GTGACTCTT-TACTTCTCGAAGACTGAAAAGA 5'

121

Arabidopsis thaliana

CTATCATCATCATCCTCGTAA

alignment

plot

GSM278334-4059

AT3G14900.1 cdna:known chromosome:TAIR10:3:5013291:5015292:-1 gene:AT3G14900 transcript:AT3G14900.1

2

1349

0.01

4

0.0113636

3

5'     CTATCATCATCATCCTCGTAA        3'
       | |||||||||||| |||| |
3' AGTAG-TAGTAGTAGTAGTAGCAGTAACAGTC 5'

123

Arabidopsis thaliana

TCTATCTTCTTCGTCTTCGAT

alignment

plot

GSM278334-4059

AT5G63650.1 cdna:known chromosome:TAIR10:5:25481517:25483719:-1 gene:AT5G63650 transcript:AT5G63650.1

2

1202

0.04

4

0.00569801

3

5'     TCTATCTTCTTCGTCTTCGAT        3'
       ||| |||||||| |||||o|o
3' AAGAAGA-AGAAGAAGAAGAAGTTGGAGCAGG 5'

125

Arabidopsis thaliana

CTTGTGGAGAGGAAGCAAGA

alignment

plot

GSM278334-4059

AT3G07860.1 cdna:known chromosome:TAIR10:3:2507880:2509509:1 gene:AT3G07860 transcript:AT3G07860.1

2

492

0.02

2

2.5

5'     CTTGTGGAGAGGAAGCAAGA         3'
       |||||||||||o| | ||||
3' TTCAGAACACCTCTCTTGCTTTCTCTGCTACG 5'

127

Arabidopsis thaliana

TTCGCTTGCAGAGAGAAATCAC

alignment

plot

GSM278334-4059

AT2G39675.1 cdna:known chromosome:TAIR10:2:16537288:16538277:-1 gene:AT2G39675 transcript:AT2G39675.1

0

379

0

15

1.5

5'     TTCGCTTGCAGAGAGAAATCAC       3'
       |||||||| |||||o|||||||
3' AGATAAGCGAACATCTCTTTTTAGTGTTGTTT 5'

129

Arabidopsis thaliana

TCATCATCATCATCATCTTCT

alignment

plot

GSM278334-4059

AT5G08600.2 cdna:novel chromosome:TAIR10:5:2786187:2790241:1 gene:AT5G08600 transcript:AT5G08600.2

2

449

0

4

0.0113636

0

5'     TCATCATCATCATCATCTTCT        3'
       |||||||||||||||||||||
3' TAGTAGTAGTAGTAGTAGTAGAAGACTGAGGT 5'

131

Arabidopsis thaliana

ACTCATAAGATCGTGACACGT

alignment

plot

GSM278334-4059

AT5G02960.1 cdna:known chromosome:TAIR10:5:693079:694515:-1 gene:AT5G02960 transcript:AT5G02960.1

2

654

0.02

2

3.5

5'     ACTCATAAGATCGTGACACGT        3'
       ||||||||o|| ||o||||o
3' TTTTTGAGTATTTTA-CATTGTGTTTTAGTTC 5'

133

Arabidopsis thaliana

TGACAGAAGAAAGAGAGCAC

alignment

plot

GSM278335-4060

AT4G19150.1 cdna:known chromosome:TAIR10:4:10471331:10472742:-1 gene:AT4G19150 transcript:AT4G19150.1

0

1018

0.04

11

3.5

5'     TGACAGAAGAAAGAGAGCAC         3'
       | |||||| |||||o||||
3' AGTAAATGTCTT-TTTCTTTCGTTATGTCTCT 5'

135

Arabidopsis thaliana

CTGGGTTGTGATGTTCTGCA

alignment

plot

GSM278335-4060

AT1G73600.1 cdna:known chromosome:TAIR10:1:27670626:27673572:1 gene:AT1G73600 transcript:AT1G73600.1

2

1725

0.01

3

1

2.5

5'     CTGGGTTGTGATGTTCTGCA         3'
       ||||||| ||||| |||o||
3' CCATGACCCAAAACTACTAGATGTATGTATGG 5'

137

Arabidopsis thaliana

TGACAGAAGAAAGAGAGCAC

alignment

plot

GSM278335-4060

AT1G27360.3 cdna:known chromosome:TAIR10:1:9501777:9503869:1 gene:AT1G27360 transcript:AT1G27360.3

0

1250

0

17

4.25

1

5'     TGACAGAAGAAAGAGAGCAC         3'
       |||||||||| |||||||||
3' TCCAACTGTCTTCTCTCTCTCGTGCCACCTAT 5'

139

Arabidopsis thaliana

TTCCACAGCTTTCTTGAACTT

alignment

plot

GSM278335-4060

AT5G61440.1 cdna:known chromosome:TAIR10:5:24707500:24708893:1 gene:AT5G61440 transcript:AT5G61440.1

2

719

0

2

2.5

5'     TTCCACAGCTTTCTTGAACTT        3'
       |o| || ||||||||||||||
3' GAATAGGTTG-CGAAAGAACTTGAATAACTAT 5'

141

Arabidopsis thaliana

TCTTCTTCGTCGCCATTACT

alignment

plot

GSM278335-4060

AT1G02090.2 cdna:known chromosome:TAIR10:1:387278:389647:-1 gene:AT1G02090 transcript:AT1G02090.2

2

793

0.04

2

0.666667

2.5

5'     TCTTCTTCGTCG-CCATTACT        3'
       |||||||||| | ||||o|||
3' GGGTAGAAGAAGCATCAGGTAGTGAGGTGAAC 5'

143

Arabidopsis thaliana

TTTGGATTGAAGGGAGCTCTA

alignment

plot

GSM278335-4060

AT5G06100.3 cdna:known chromosome:TAIR10:5:1837907:1840417:1 gene:AT5G06100 transcript:AT5G06100.3

2

1260

0.01

4

1

2.5

5'     TTTGGATTGAAGGGAGCTCTA        3'
        ||||| ||||||||||||o|
3' CTTATAACCTTACTTCCCTCGAGGTCGAAGTG 5'

145

Arabidopsis thaliana

TTTCGTTGTCTGTTCGACCTT

alignment

plot

GSM278335-4060

AT5G49330.1 cdna:known chromosome:TAIR10:5:19998952:20001378:-1 gene:AT5G49330 transcript:AT5G49330.1

0

386

0.01

25

3

5'     TTTCGTTGTCTGTTCGACCTT        3'
       |||||||||||||||  |||
3' AATTAAAGCAACAGACAAGAAGGACCATCTAC 5'

147

Arabidopsis thaliana

TTGCTCGACCCGGGGGTCGAGT

alignment

plot

GSM278335-4060

AT5G31753.1 cdna:pseudogene chromosome:TAIR10:5:11696730:11697699:1 gene:AT5G31753 transcript:AT5G31753.1

1

243

0

5

1.66667

4

5'     TTGCTCGACCCGGGGGTCGAGT       3'
        |o||||||||  o||||||||
3' GGTGTATGAGCTGGGGGTCCAGCTCACTGAAA 5'

149

Arabidopsis thaliana

TCCGGAGGGATTCCTTCCTT

alignment

plot

GSM278335-4060

AT4G05320.5 cdna:known chromosome:TAIR10:4:2718170:2720133:1 gene:AT4G05320 transcript:AT4G05320.5

2

420

0.01

3

0.6

3

5'     TCCGGAGGGATTCCTTCCTT         3'
       ||||||||o|| ||o|| ||
3' GACCAGGCCTCCTTATGGGAGAAACAGAACCT 5'

151

Arabidopsis thaliana

TCGGACCAGGCTTCATTCCCC

alignment

plot

GSM278335-4060

AT1G52150.1 cdna:known chromosome:TAIR10:1:19409711:19414678:-1 gene:AT1G52150 transcript:AT1G52150.1

2

1279

0.01

22

7.33333

2.5

5'     TCGGACCAGGCTTCATTCCCC        3'
       o||||||||||||||||||
3' CTTAGGCCTGGTCCGAAGTAAGGTCCGTAGAC 5'

153

Arabidopsis thaliana

CTTGTGGAGAGGAAGCAAGA

alignment

plot

GSM278335-4060

AT4G16980.1 cdna:known chromosome:TAIR10:4:9556978:9557812:1 gene:AT4G16980 transcript:AT4G16980.1

2

125

0.01

3

2

5'     CTTGTGGAGAGGAAGCAAGA         3'
       ||||||o||||o||| ||||
3' TTCCGAACACTTCTCTTTC-TTCTCCGGTACC 5'

155

Arabidopsis thaliana

TCGACCTGGGGGTCGAGCGA

alignment

plot

GSM278335-4060

AT1G15405.1 cdna:known chromosome:TAIR10:1:5297875:5298166:-1 gene:AT1G15405 transcript:AT1G15405.1

2

57

0.03

9

3.5

5'     TCGACCTGGGGGTCGAGCGA         3'
       o|||||o| |||o||||| |
3' TCTAGGCTGGGCACCCGGCTCGGTCACAAGGT 5'

157

Arabidopsis thaliana

TATCTCTGCAACTGCAACTGC

alignment

plot

GSM278335-4060

AT4G30990.1 cdna:novel chromosome:TAIR10:4:15084098:15097920:1 gene:AT4G30990 transcript:AT4G30990.1

1

6370

0

7

3.5

5'     TATCTCTGCAACTGCAA-CTGC       3'
       |||||||| ||||o||| || |
3' GTATATAGAGACCTTGATGTTCGAAGGCCAAG 5'

159

Arabidopsis thaliana

ATGATGCTGTTGGGTTTCTC

alignment

plot

GSM278335-4060

AT3G04290.1 cdna:known chromosome:TAIR10:3:1133320:1136316:-1 gene:AT3G04290 transcript:AT3G04290.1

2

1097

0.02

6

2.5

5'     ATGATGCTGTTGGGTTTCTC         3'
       ||||| ||o|||| ||||||
3' TTGCTACTAGGATAACCGAAAGAGACAGCCTA 5'

161

Arabidopsis thaliana

ACTTTTCACTGTTTGATTCGT

alignment

plot

GSM278335-4060

AT3G20300.1 cdna:known chromosome:TAIR10:3:7079617:7081921:-1 gene:AT3G20300 transcript:AT3G20300.1

1

1235

0

6

3.5

5'     ACTTTTCACTGTTTGATTCGT        3'
       | |o||||||o|o|||||| |
3' GGTATTAGAAGTGATAGACTAAG-AGGTAATA 5'

163

Arabidopsis thaliana

CTCGACCTGAGGGTCGAGTGGT

alignment

plot

GSM278335-4060

AT4G34050.1 cdna:known chromosome:TAIR10:4:16310775:16312216:1 gene:AT4G34050 transcript:AT4G34050.1

2

786

0.03

10

5

4

5'     CTCGACCTGAGGGTCGAGTGGT       3'
       ||||| |o||||||| ||oo|o
3' TCTAGAGCTAGGCTCCCAG-TCGTCGTTCTCG 5'

165

Arabidopsis thaliana

TTGGACTGAAGGGAGCTCCCT

alignment

plot

GSM278335-4060

AT4G18390.1 cdna:known chromosome:TAIR10:4:10162953:10165562:-1 gene:AT4G18390 transcript:AT4G18390.1

2

1387

0.01

5

2.5

3

5'     TTGGACTGAAGGGAGCTCCCT        3'
       |||||||||||||  | ||||
3' ACTTAACCTGACTTCCCAGG-GGGACAACTTT 5'

167

Arabidopsis thaliana

TGGGTGGTGATCATATAAGAT

alignment

plot

GSM278335-4060

AT1G69770.1 cdna:known chromosome:TAIR10:1:26248318:26253585:-1 gene:AT1G69770 transcript:AT1G69770.1

2

2037

0

9

2

5'     TGGGTGGTGATCATATAAGAT        3'
        |||||o|||||||||||||o
3' ATTCTCCCACTACTAGTATATTCTGTACGAAA 5'

169

Arabidopsis thaliana

TGTCTTCATCGTCATCACAA

alignment

plot

GSM278335-4060

AT4G17100.1 cdna:known chromosome:TAIR10:4:9609910:9612655:-1 gene:AT4G17100 transcript:AT4G17100.1

2

221

0.01

3

1.5

2.5

5'     TGTCTTCATCGTCATCACAA         3'
       ||o|||||||o|||o||| |
3' CTCAACGGAAGTAGTAGTGGTGGTAGCAGAGG 5'

171

Arabidopsis thaliana

TGAGAAGAAGAAGAAGAAAA

alignment

plot

GSM278335-4060

AT5G11000.1 cdna:known chromosome:TAIR10:5:3479029:3480425:-1 gene:AT5G11000 transcript:AT5G11000.1

1

50

0.04

5

3

5'     TGAGAAGAAGAAGAAGAAAA         3'
        o|||||||||||||o |||
3' ACCCCTTCTTCTTCTTCTTTCTTTCTTATTTT 5'

173

Arabidopsis thaliana

ATCGAAGGAGATGGAGGACG

alignment

plot

GSM278335-4060

AT3G26200.1 cdna:known chromosome:TAIR10:3:9589282:9591179:1 gene:AT3G26200 transcript:AT3G26200.1

0

1445

0.03

18

4

5'     ATCGAAGGAGATGGAGGACG         3'
       |||o|||o|| |oo||o||o
3' AGGTTAGTTTCTTC-ATTTCTTGTAATTCATT 5'

175

Arabidopsis thaliana

CGACCCAAGAGCTTTGGGTCT

alignment

plot

GSM278335-4060

AT5G16990.1 cdna:known chromosome:TAIR10:5:5581658:5584029:-1 gene:AT5G16990 transcript:AT5G16990.1

2

1061

0.01

4

3

5'    CGAC-CCAAGAGCTTTGGGTCT        3'
      |o|| ||||||o|||||||| |
3' GTGGTTGAGGTTCTTGAAACCCATAAACAGCA 5'

177

Arabidopsis thaliana

TTAGATTCACGCACAAACTCG

alignment

plot

GSM278335-4060

AT1G31280.1 cdna:known chromosome:TAIR10:1:11181711:11185344:1 gene:AT1G31280 transcript:AT1G31280.1

0

3233

0

76

1

5'     TTAGATTCACGCACAAACTCG        3'
       ||||||||||||||||||||
3' GGTTAATCTAAGTGCGTGTTTGAGGAAAGATG 5'

179

Arabidopsis thaliana

TACAAGCAGTTGCAGTTGCA

alignment

plot

GSM278335-4060

ATCG00020.1 cdna:known chromosome:TAIR10:Pt:383:1444:-1 gene:ATCG00020 transcript:ATCG00020.1

2

463

0.02

12

3

5'     TACAAGCAGTTGCAGTTGCA         3'
        || ||||||o||||o||||
3' TCTTTTG-TCGTCAGCGTCGACGTTGTCCTCG 5'

181

Arabidopsis thaliana

TTTCGTTGTCTGTTCGACCTT

alignment

plot

GSM278335-4060

AT2G47460.1 cdna:known chromosome:TAIR10:2:19476337:19479478:1 gene:AT2G47460 transcript:AT2G47460.1

0

402

0

8

3

5'     TTTCGTTGTCTGTTCGACCTT        3'
       |||||||||||||||  |||
3' AAATAAAGCAACAGACAAGAGGGACCATCTAC 5'

183

Arabidopsis thaliana

TGACAGAAGAAAGAGAGCAC

alignment

plot

GSM278335-4060

AT3G15270.1 cdna:known chromosome:TAIR10:3:5140365:5141348:-1 gene:AT3G15270 transcript:AT3G15270.1

0

655

0.02

28

3

5'     TGACAGAAGAAAGAGAGCAC         3'
       |||||||||| |||||||
3' ATCTACTGTCTTCTCTCTCTCGCCCTCCCAAA 5'

185

Arabidopsis thaliana

TAAGTTAAGATTTGTGAAGAA

alignment

plot

GSM278335-4060

AT1G18090.1 cdna:known chromosome:TAIR10:1:6224501:6227822:1 gene:AT1G18090 transcript:AT1G18090.1

0

1818

0.01

6

3

2.5

5'     TAAGTTAAGATTTGTGAAGAA        3'
       |||o|||||| ||o|o|||||
3' TAGTATTTAATTCTCAATATTTCTTCGATTCT 5'

187

Arabidopsis thaliana

TCCGGAGGGATTCCTTCCTT

alignment

plot

GSM278335-4060

AT4G05320.6 cdna:known chromosome:TAIR10:4:2718187:2719988:1 gene:AT4G05320 transcript:AT4G05320.6

2

403

0.01

3

0.6

3

5'     TCCGGAGGGATTCCTTCCTT         3'
       ||||||||o|| ||o|| ||
3' GACCAGGCCTCCTTATGGGAGAAACAGAACCT 5'

189

Arabidopsis thaliana

TTCCACAGCTTTCTTGAACTT

alignment

plot

GSM278335-4060

AT2G22840.1 cdna:known chromosome:TAIR10:2:9728756:9731301:1 gene:AT2G22840 transcript:AT2G22840.1

0

792

0

49

3

5'    TTCCACA-GCTTTCTTGAACTT        3'
      ||||||| ||||||||||||
3' CGGAAGGTGTCCGAAAGAACTTGCTACCGCCG 5'

191

Arabidopsis thaliana

CTCGCAAATCCCTCGCAGAA

alignment

plot

GSM278335-4060

AT5G14570.1 cdna:known chromosome:TAIR10:5:4695084:4697078:-1 gene:AT5G14570 transcript:AT5G14570.1

2

1081

0.02

4

3

5'     CTCGCAAATCCCTCGCAGAA         3'
       ||| |||||| |||| ||||
3' AAGTGAG-GTTTAGAGAGCATCTTTATAGGCC 5'

193

Arabidopsis thaliana

TGAGAAGAAGAAGAAGAAAA

alignment

plot

GSM278335-4060

AT2G40520.1 cdna:known chromosome:TAIR10:2:16923068:16925914:1 gene:AT2G40520 transcript:AT2G40520.1

2

1787

0.03

30

0.0472016

1.5

5'     TGAGAAGAAGAAGAAGAAAA         3'
        o||||||||||||||||||
3' TCTTCTTCTTCTTCTTCTTCTTTTTCTTTTTG 5'

195

Arabidopsis thaliana

AAACGACGTCGTTTCGTTCT

alignment

plot

GSM278335-4060

AT4G11080.1 cdna:known chromosome:TAIR10:4:6760867:6763272:-1 gene:AT4G11080 transcript:AT4G11080.1

2

120

0.01

4

2.5

5'     AAACGACGTCGTTTCGTTCT         3'
       ||||||| ||||||| |||o
3' AGAGTTTGCTGAAGCAAAGAAAGGGGAACAGA 5'

197

Arabidopsis thaliana

TACCATCTCTTGAGGAACTTGG

alignment

plot

GSM278335-4060

AT1G07930.1 cdna:known chromosome:TAIR10:1:2458244:2460790:1 gene:AT1G07930 transcript:AT1G07930.1

2

1273

0.03

18

3.6

4

5'     TACCATCTCTTGAGGAACTTGG       3'
       o||||| |||| |o||| ||||
3' CGTAGTGGTA-AGAAGTTCTTAAACCCGAGGA 5'

199

Arabidopsis thaliana

TCATCATCATCATCATCGTAT

alignment

plot

GSM278335-4060

AT1G60220.1 cdna:known chromosome:TAIR10:1:22208332:22212171:1 gene:AT1G60220 transcript:AT1G60220.1

0

797

0.03

60

2.85714

1.5

5'     TCATCATCATCATCATCGT-AT       3'
       |||||||||||||||||o| ||
3' TAGTAGTAGTAGTAGTAGTAGTAGTAGTTAGT 5'

201

Arabidopsis thaliana

ACTGTATATATGTAAGTGACA

alignment

plot

GSM278335-4060

AT1G63330.1 cdna:known chromosome:TAIR10:1:23489840:23491519:1 gene:AT1G63330 transcript:AT1G63330.1

1

1295

0.01

5

2.5

4

5'    ACT-GTATATATGTAAGTGACA        3'
      | | ||||||||||||o|o ||
3' GTATCATCATATATACATTTATAGTTCAAAAT 5'

203

Arabidopsis thaliana

TCAATGCATTGAAAGTGACTA

alignment

plot

GSM278335-4060

AT1G63330.1 cdna:known chromosome:TAIR10:1:23489840:23491519:1 gene:AT1G63330 transcript:AT1G63330.1

2

775

0

4

1

5'     TCAATGCATTGAAAGTGACTA        3'
       ||||||||||||| |||||||
3' AGCTAGTTACGTAACTTGCACTGATTTAATCC 5'

205

Arabidopsis thaliana

TCGACCAGGGGGTCGAGTGAT

alignment

plot

GSM278335-4060

AT1G70730.3 cdna:known chromosome:TAIR10:1:26669020:26673166:-1 gene:AT1G70730 transcript:AT1G70730.3

2

1913

0.04

5

1.66667

4

5'     TCGACCAGGGGGTCGAGTG-AT       3'
       ||o||||||||oo|o|| | ||
3' TTGTAGTTGGTCCCCTGGTTCTCGTAGGACTC 5'

207

Arabidopsis thaliana

TGCCTGGCTCCCTGTATGCC

alignment

plot

GSM278335-4060

AT2G28350.1 cdna:known chromosome:TAIR10:2:12114331:12116848:1 gene:AT2G28350 transcript:AT2G28350.1

2

1340

0

25

1

5'     TGCCTGGCTCCCTGTATGCC         3'
       ||||||||||||||||| ||
3' TCGAACGGACCGAGGGACATAAGGACGTCCTC 5'

209

Arabidopsis thaliana

TTGGACTGAAGGGAGCTCCCT

alignment

plot

GSM278335-4060

AT3G15030.2 cdna:known chromosome:TAIR10:3:5061681:5064038:1 gene:AT3G15030 transcript:AT3G15030.2

2

1487

0.03

26

8.66667

3.5

5'     TTGGACTGAAGGGAGCTCCCT        3'
       o|||||||||||| o|o|| |
3' CATTGACCTGACTTCCCCTGGGG-AGACTCTT 5'

211

Arabidopsis thaliana

TGTTGCCGTAGCTGCAGCGGC

alignment

plot

GSM278335-4060

AT3G16100.1 cdna:known chromosome:TAIR10:3:5459172:5460790:1 gene:AT3G16100 transcript:AT3G16100.1

0

686

0

23

4

5'     TGTTGCCGTAGCTGCAGCGGC        3'
       |||||||| |||o |||| o|
3' AGAAACAACGGC-TCGGGGTCGATGTAGTTAC 5'

213

Arabidopsis thaliana

TCGCTTGGTGCAGGTCGGGA

alignment

plot

GSM278335-4060

AT1G48410.2 cdna:known chromosome:TAIR10:1:17886098:17892586:-1 gene:AT1G48410 transcript:AT1G48410.2

2

522

0

9

3

2.5

5'     TCGCTTGGTGCAGGTCGGGA         3'
       | |||||o||||| ||||||
3' CTCCATCGAACTACGTCGAGCCCTTGACTAAC 5'

215

Arabidopsis thaliana

ACCCTCACAAATTCCTCGCA

alignment

plot

GSM278335-4060

AT4G22840.1 cdna:known chromosome:TAIR10:4:11991497:11993770:-1 gene:AT4G22840 transcript:AT4G22840.1

1

275

0.02

3

4

5'     ACCCTCACAAATTCCTCGCA         3'
       || | |||||||||||||
3' TAGATGCG-GTGTTTAAGGAGCTAGGCGGTTG 5'

217

Arabidopsis thaliana

TCCTCCACCACCGAGAGCATT

alignment

plot

GSM278335-4060

AT2G32690.1 cdna:known chromosome:TAIR10:2:13863717:13864596:-1 gene:AT2G32690 transcript:AT2G32690.1

2

615

0.03

25

6.25

3.5

5'     TCCTCCACCACCGAGAGCATT        3'
       |||||||||||| |o || ||
3' CTGGAGGAGGTGGTGG-TTACGGAAATGGTTT 5'

219

Arabidopsis thaliana

TGAGAAGAAGAAGAAGAAAA

alignment

plot

GSM278335-4060

AT5G07842.1 cdna:known chromosome:TAIR10:5:2506634:2508435:-1 gene:AT5G07842 transcript:AT5G07842.1

1

80

0.04

7

3.5

3

5'    TGA-GAAGAAGAAGAAGAAAA         3'
       || ||||||||||||||| |
3' AGGTCTACTTCTTCTTCTTCTTCTTCTTCTTT 5'

221

Arabidopsis thaliana

CATCGTCTTCTTCCTCGATC

alignment

plot

GSM278335-4060

AT5G54830.1 cdna:known chromosome:TAIR10:5:22273070:22276301:1 gene:AT5G54830 transcript:AT5G54830.1

1

2845

0.01

5

4

5'     CATCGTCTTCTTCCTCGATC         3'
        |||o||||||||| |o ||
3' TACCTTAGTAGAAGAAGGTGTAAGGGGTTTTG 5'

223

Arabidopsis thaliana

TTGAAAATGTTGTTGCTGCTGCTG

alignment

plot

GSM278335-4060

AT5G25220.2 cdna:known chromosome:TAIR10:5:8736074:8738584:1 gene:AT5G25220 transcript:AT5G25220.2

2

245

0

3

1.5

3

5'     TTGAAAATGTTGTTGCTGCTGCTG     3'
       ||| |||||||||||||| ||| |
3' GAAGAACCTTTACAACAACGACAACGCCTCCT 5'

225

Arabidopsis thaliana

GGAATCTTGATGATGCTGCAT

alignment

plot

GSM278335-4060

AT5G60120.2 cdna:known chromosome:TAIR10:5:24207689:24211743:1 gene:AT5G60120 transcript:AT5G60120.2

0

1821

0

23

11.5

1

5'     GGAATCTTGATGATGCTGCAT        3'
       o|||||o||||||||||||||
3' TCACTCTTAGGACTACTACGACGTAAACTTTT 5'

227

Arabidopsis thaliana

TAACTATTTTGAGAAGAAGTG

alignment

plot

GSM278335-4060

AT3G20720.1 cdna:known chromosome:TAIR10:3:7239908:7247005:1 gene:AT3G20720 transcript:AT3G20720.1

2

1462

0.01

2

1

2.5

5'    TAACTAT-TTTGAGAAGAAGTG        3'
      ||||| | ||||||||o|||||
3' CCTATTGACAGAAACTCTTTTTCACACCCCCA 5'

229

Arabidopsis thaliana

TTGGACTGAAGGGAGCTCCCT

alignment

plot

GSM278335-4060

AT1G30210.1 cdna:known chromosome:TAIR10:1:10627185:10630538:-1 gene:AT1G30210 transcript:AT1G30210.1

2

1142

0

4

2

3

5'     TTGGACTGAAGGGAGCTCCCT        3'
       |||||||||||||  | ||||
3' ACTTAACCTGACTTCCCAGG-GGGATGATGAC 5'

231

Arabidopsis thaliana

CTCGGGATGGTTCCTCGATG

alignment

plot

GSM278335-4060

AT1G24490.2 cdna:known chromosome:TAIR10:1:8682234:8685271:1 gene:AT1G24490 transcript:AT1G24490.2

2

310

0.03

2

1

3

5'     CTCGGGATGGTTCCTCGATG         3'
       ||||| ||||| ||| ||||
3' CTAAGAGCCGTACCA-GGAACTACTTTAGTTT 5'

233

Arabidopsis thaliana

TCCGGAGGGATTCCTTCCTT

alignment

plot

GSM278335-4060

AT3G52590.1 cdna:known chromosome:TAIR10:3:19505629:19506932:1 gene:AT3G52590 transcript:AT3G52590.1

2

146

0

4

1

5'     TCCGGAGGGATTCCTTCCTT         3'
       ||||||||||||||||| ||
3' GACTAGGCCTCCCTAAGGAAGAAACAGAACCT 5'

235

Arabidopsis thaliana

TGCTCGATTGTCTGGTTGAG

alignment

plot

GSM278335-4060

AT4G15410.1 cdna:known chromosome:TAIR10:4:8814801:8816805:1 gene:AT4G15410 transcript:AT4G15410.1

1

1284

0.04

21

4

5'     TGCTCGATTGTCTGGTTGAG         3'
       |||||||| || ||||o |o
3' TCGAACGAGCTACCAAACCAGGTTAAGACAGT 5'

237

Arabidopsis thaliana

TCATCTTCATCATCATCATCT

alignment

plot

GSM278335-4060

AT2G21420.1 cdna:known chromosome:TAIR10:2:9169713:9171746:1 gene:AT2G21420 transcript:AT2G21420.1

0

1184

0.02

60

2.85714

2

5'     TCATCTTCATCATCATCATCT        3'
       ||||| ||||||||||||||
3' TAGTAGTAGTAGTAGTAGTAGTAGTAGCGTTG 5'

239

Arabidopsis thaliana

TGCTCGATTGTCTGGTTGAG

alignment

plot

GSM278335-4060

AT3G28830.1 cdna:known chromosome:TAIR10:3:10831168:10833284:1 gene:AT3G28830 transcript:AT3G28830.1

2

1540

0.04

11

3

5'     TGCTCGATTGTCTGGTTGAG         3'
       || | ||||||||| |||||
3' GTGAACCA-CTAACAGACGAACTCGAGACTGA 5'

241

Arabidopsis thaliana

GTGAGTTTAGGGTTCTTGAA

alignment

plot

GSM278335-4060

AT5G48810.1 cdna:known chromosome:TAIR10:5:19789067:19790334:-1 gene:AT5G48810 transcript:AT5G48810.1

0

77

0.01

17

4

5'     GTGAGTTTAGGGTTCTTGAA         3'
       |||||||| ||o| |||o |
3' TAGACACTCAAACCCTA-GAATGTGGTTGGCG 5'

243

Arabidopsis thaliana

GTGAGTTTAGGGTTCTTGAA

alignment

plot

GSM278335-4060

AT3G52230.1 cdna:known chromosome:TAIR10:3:19371213:19372687:1 gene:AT3G52230 transcript:AT3G52230.1

2

81

0

4

2

5'     GTGAGTTTAGGGTTCTTGAA         3'
        ||||||||||||| |||||
3' CTAAAACTCAAATCCCAA-AACTTAACTTAGC 5'

245

Arabidopsis thaliana

AACGGCGTGAGTGCCGTAGA

alignment

plot

GSM278335-4060

AT1G80950.1 cdna:known chromosome:TAIR10:1:30412544:30415113:-1 gene:AT1G80950 transcript:AT1G80950.1

1

462

0

6

4

5'     AACGGCGTGAGTGCCGTAGA         3'
       |||o||||o|o|o|| || |
3' TCTTTTGTCGCATTTATGGGATGTTTAGTTCA 5'

247

Arabidopsis thaliana

CTCTGCCAAAGGAGATTTGC

alignment

plot

GSM278335-4060

AT4G09730.1 cdna:known chromosome:TAIR10:4:6136249:6139711:1 gene:AT4G09730 transcript:AT4G09730.1

2

1932

0.05

3

5'     CTCTGCCAAAGGAGATTTGC         3'
       || |||| |||o|||o||||
3' CCGAGA-ACGGCTTCTTCTGAACGGGGCCTTT 5'

249

Arabidopsis thaliana

TAGTCCGGTTTTGGATACGTG

alignment

plot

GSM278335-4060

AT1G42970.1 cdna:known chromosome:TAIR10:1:16127381:16129843:1 gene:AT1G42970 transcript:AT1G42970.1

2

1585

0.05

29

4

5'     TAGTCCGGTTTTGGATACGTG        3'
       |||| ||o|||o|o||| ||o
3' ACGTATCATGCTAAAGCTTATTCATTGAGTAC 5'

251

Arabidopsis thaliana

GATGATGATGATACTCAGGA

alignment

plot

GSM278335-4060

AT3G25013.1 cdna:known chromosome:TAIR10:3:9113875:9116188:1 gene:AT3G25013 transcript:AT3G25013.1

1

289

0.01

2

2.5

5'     GATGATGATGATACTCAGGA         3'
       || |||||||||||o ||||
3' TCTCCTTCTACTACTATGGTTCCTGATACTCG 5'

253

Arabidopsis thaliana

TTGACAGAAGATAGAGAGCAC

alignment

plot

GSM278335-4060

AT2G42200.1 cdna:known chromosome:TAIR10:2:17587407:17589630:1 gene:AT2G42200 transcript:AT2G42200.1

2

948

0

3

1

5'     TTGACAGAAGATAGAGAGCAC        3'
       ||||||||||| |||||||||
3' CCTAAACTGTCTTCTCTCTCTCGTGTCAAACT 5'

255

Arabidopsis thaliana

ACTCAGCCAGGGGGTCGAGTG

alignment

plot

GSM278335-4060

AT1G70730.1 cdna:known chromosome:TAIR10:1:26668865:26672779:-1 gene:AT1G70730 transcript:AT1G70730.1

2

1737

0.03

5

1.66667

4

5'     ACTCAGCCAGGGGGTCGAGTG        3'
       | |||o|||||||oo|o|| |
3' GTTGT-AGTTGGTCCCCTGGTTCTCGTAGGAC 5'

257

Arabidopsis thaliana

CTGGTTTAGTCACTTTCACTG

alignment

plot

GSM278335-4060

AT1G47128.1 cdna:known chromosome:TAIR10:1:17282825:17285670:-1 gene:AT1G47128 transcript:AT1G47128.1

2

577

0.03

4

3

5'     CTGGTTTAGTCACTTTCACTG        3'
       |||||||| || |o|o|||||
3' GCTAGACCAAATAAG-GGAGGTGACGAGGTTA 5'

259

Arabidopsis thaliana

CTATCATCATCATCCTCGTAA

alignment

plot

GSM278335-4060

AT1G49900.1 cdna:known chromosome:TAIR10:1:18473908:18477643:-1 gene:AT1G49900 transcript:AT1G49900.1

2

1931

0.01

19

0.0576299

2.5

5'     CTATCATCATCATCCTCGTAA        3'
       | |||||||||||| ||o|||
3' AGTAG-TAGTAGTAGTAGTAGTATTATTCTTG 5'

261

Arabidopsis thaliana

CATCCAAGGTGTTTGTAGAAA

alignment

plot

GSM278335-4060

AT1G09750.1 cdna:known chromosome:TAIR10:1:3157501:3159148:1 gene:AT1G09750 transcript:AT1G09750.1

0

1494

0.01

41

4

5'     CATCCAAGGTGTTTGTAGAAA        3'
       ||| |||o||o| |||||||
3' GCAAGTATGTTTCATATACATCTTCCAGTTCG 5'

263

Arabidopsis thaliana

ATCCCTCGCAAATTTTGCGA

alignment

plot

GSM278335-4060

AT5G38480.1 cdna:known chromosome:TAIR10:5:15409697:15411516:1 gene:AT5G38480 transcript:AT5G38480.1

2

437

0.04

5

2.5

3.5

5'    ATCCC-TCGCAAATTTTGCGA         3'
      ||||| ||o|| ||||||| |
3' TTTTAGGGTAGTGTCTAAAACGATTCGAGCCT 5'

265

Arabidopsis thaliana

TGCTCGATTGTCTGGTTGAG

alignment

plot

GSM278335-4060

AT5G23820.1 cdna:known chromosome:TAIR10:5:8031268:8033020:1 gene:AT5G23820 transcript:AT5G23820.1

0

758

0.02

23

4

5'     TGCTCGATTGTCTGGTTGAG         3'
       |||||||||| || ||| |
3' CTGTACGAGCTAAC-GAACAAGTATAGCGATA 5'

267

Arabidopsis thaliana

TGGAGCCATGGTGGGAGCTG

alignment

plot

GSM278335-4060

AT5G14380.1 cdna:known chromosome:TAIR10:5:4635797:4636676:-1 gene:AT5G14380 transcript:AT5G14380.1

2

295

0

9

2

5'     TGGAGCCATGGTGGGAGCTG         3'
       ||||||| |||| |||||||
3' GCCGACCTCGGAACCAACCTCGACTTCCTCGG 5'

269

Arabidopsis thaliana

TAGAAGGGAGTGAGTTCTCG

alignment

plot

GSM278335-4060

AT5G38660.1 cdna:known chromosome:TAIR10:5:15473109:15475552:-1 gene:AT5G38660 transcript:AT5G38660.1

2

801

0.03

13

6.5

3

5'     TAGAAGGGAGTGAGTTCTCG         3'
        ||||||o|||||o|| |||
3' AGGTTTCTTCCTTCACTTAA-AGCGGACAGAA 5'

271

Arabidopsis thaliana

TGCTCGTCTTCGCCGGTTAGG

alignment

plot

GSM278335-4060

AT1G15370.1 cdna:known chromosome:TAIR10:1:5287047:5288577:1 gene:AT1G15370 transcript:AT1G15370.1

2

312

0.02

3

4

5'     TGCTCGTCTTCGCCGGTTAGG        3'
       |o|||||||| |||ooo |||
3' TAGTATGAGCAGAAACGGTTGTTCCTTCTACG 5'

273

Arabidopsis thaliana

TGAGAAGAAGAAGAAGAAAA

alignment

plot

GSM278335-4060

AT3G15140.1 cdna:known chromosome:TAIR10:3:5099532:5101781:-1 gene:AT3G15140 transcript:AT3G15140.1

2

234

0.05

30

0.0472016

1.5

5'     TGAGAAGAAGAAGAAGAAAA         3'
        o||||||||||||||||||
3' TCTTCTTCTTCTTCTTCTTCTTTTCAGTCTCC 5'

275

Arabidopsis thaliana

TTCCACAGCTTTCTTGAACTG

alignment

plot

GSM278335-4060

AT5G50460.1 cdna:known chromosome:TAIR10:5:20551437:20552566:-1 gene:AT5G50460 transcript:AT5G50460.1

0

467

0.02

29

4

5'     TTCCACAGCTTTCTTGAACTG        3'
        ||||||||||| ||o|| |o
3' GCTTTAGGTGTCGAAA-AATTTAATCAAACGA 5'

277

Arabidopsis thaliana

TCGAACCCGAACCTGAACCGA

alignment

plot

GSM278335-4060

AT3G27200.1 cdna:known chromosome:TAIR10:3:10043522:10044373:-1 gene:AT3G27200 transcript:AT3G27200.1

2

460

0.01

3

3.5

5'     TCGAACCCGAACCTGAA-CCGA       3'
       o |||||||| |||||| ||||
3' CTAGGTCTTGGGCTGGGACTTAGGCTTGGGCT 5'

279

Arabidopsis thaliana

TGACAGAAGATAGAGAGCAC

alignment

plot

GSM278335-4060

AT3G49780.1 cdna:known chromosome:TAIR10:3:18465679:18466376:1 gene:AT3G49780 transcript:AT3G49780.1

1

377

0.04

8

4

5'     TGACAGAAGATAGAGAGCAC         3'
        o||||||o|o|||o|| ||
3' TCTGCTTGTCTTTTGTCTTTCATGATGTCACT 5'

281

Arabidopsis thaliana

TCAATGCATTGAAAGTGACTA

alignment

plot

GSM278335-4060

AT5G41170.1 cdna:known chromosome:TAIR10:5:16478486:16480584:-1 gene:AT5G41170 transcript:AT5G41170.1

1

892

0

4

1

5'     TCAATGCATTGAAAGTGACTA        3'
       |||||||||||||||||| ||
3' AGCTAGTTACGTAACTTTCACTAATGTAGTCC 5'

283

Arabidopsis thaliana

TGACAGAAGAAAGAGAGCAC

alignment

plot

GSM278335-4060

AT3G57920.1 cdna:known chromosome:TAIR10:3:21444321:21446035:-1 gene:AT3G57920 transcript:AT3G57920.1

2

855

0

3

1

5'     TGACAGAAGAAAGAGAGCAC         3'
       |||||||||| |||||||||
3' TCAAACTGTCTTCTCTCTCTCGTGTCGAACTT 5'

285

Arabidopsis thaliana

TCGATAAACCTCTGCATCCAG

alignment

plot

GSM278335-4060

AT1G01040.1 cdna:known chromosome:TAIR10:1:23146:31227:1 gene:AT1G01040 transcript:AT1G01040.1

2

3433

0

3

1

5'    TCGATAA-ACCTCTGCATCCAG        3'
      ||||||| ||||||||||||||
3' TGTAGCTATTATGGAGACGTAGGTCGAGTAAC 5'

287

Arabidopsis thaliana

AGATGGACGAGTGCAAGAATT

alignment

plot

GSM278335-4060

AT5G17630.1 cdna:known chromosome:TAIR10:5:5809334:5810962:1 gene:AT5G17630 transcript:AT5G17630.1

0

1558

0.04

17

4

5'     AGATGGACGAGTGCAAGAATT        3'
       || |o||||||  ||||||o|
3' TAGTTC-ATCTGCTCCAGTTCTTGATTCATCT 5'

289

Arabidopsis thaliana

TACCATCTCTTGAGGAACTTGG

alignment

plot

GSM278335-4060

AT1G07920.1 cdna:known chromosome:TAIR10:1:2454846:2457321:1 gene:AT1G07920 transcript:AT1G07920.1

2

1261

0.01

18

3.6

3

5'     TACCATCTCTTGAGGAACTTGG       3'
       o||||| |||| |o||||||||
3' CGTAGTGGTA-AGAAGTTCTTGAACCCGAGGA 5'

291

Arabidopsis thaliana

TGACAGAAGATAGAGAGCAC

alignment

plot

GSM278335-4060

AT5G38610.1 cdna:known chromosome:TAIR10:5:15460691:15461459:-1 gene:AT5G38610 transcript:AT5G38610.1

2

589

0

4

2

5'     TGACAGAAGATAGAGAGCAC         3'
       |||||||||| ||||||||
3' CTACACTGTCTTCT-TCTCTCGTATAACTTAT 5'

293

Arabidopsis thaliana

TTGGACTGAAGGGAGCTCCTT

alignment

plot

GSM278335-4060

AT1G53230.1 cdna:known chromosome:TAIR10:1:19849788:19851725:-1 gene:AT1G53230 transcript:AT1G53230.1

2

1195

0.02

8

3.5

5'     TTGGACTGAAGGGAGCTCCTT        3'
        |||||||||||| o|o|||o
3' CAATTACCTGACTTCCCCTGGGGAGACACTAT 5'

295

Arabidopsis thaliana

AGAGAAACCCAACAGCATCAT

alignment

plot

GSM278335-4060

AT1G69160.1 cdna:known chromosome:TAIR10:1:26000214:26001588:1 gene:AT1G69160 transcript:AT1G69160.1

0

1181

0.04

12

4

5'     AGAGAAACCCAACAGCATCAT        3'
        o|||||||||| |o||| ||
3' TTAGGTTCTTTGGGTTTTTGTA-TATTGAATA 5'

297

Arabidopsis thaliana

TCGGACCAGGCTTCATCCCCC

alignment

plot

GSM278335-4060

AT1G30490.1 cdna:known chromosome:TAIR10:1:10796135:10800961:-1 gene:AT1G30490 transcript:AT1G30490.1

2

806

0

54

31.5

2.5

5'     TCGGACCAGGCTTCATCCCCC        3'
       o||||||||||||||||||
3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAGAC 5'

299

Arabidopsis thaliana

TCGACCTGGTTGTCGAGTGGT

alignment

plot

GSM278335-4060

AT5G39030.1 cdna:known chromosome:TAIR10:5:15620066:15622486:1 gene:AT5G39030 transcript:AT5G39030.1

2

119

0.04

3

3.5

5'    TCGACC-TGGTTGTCGAGTGGT        3'
      |||||| ||||||||||o ||
3' TCAAGCTGGCACCAACAGCTTCCCCTGTAGCC 5'

301

Arabidopsis thaliana

TCCTCCACCACCGAGAGCAT

alignment

plot

GSM278335-4060

AT2G32690.2 cdna:known chromosome:TAIR10:2:13863717:13864596:-1 gene:AT2G32690 transcript:AT2G32690.2

2

585

0.05

25

6.25

3.5

5'     TCCTCCACCACCGAGAGCAT         3'
       |||||||||||| |o || |
3' CTGGAGGAGGTGGTGG-TTACGGAAATGGTTT 5'

303

Arabidopsis thaliana

TCGGACCAGGCTTCATTCCCC

alignment

plot

GSM278335-4060

AT2G34710.1 cdna:known chromosome:TAIR10:2:14639323:14644273:-1 gene:AT2G34710 transcript:AT2G34710.1

2

881

0

55

32.5

2.5

5'     TCGGACCAGGCTTCATTCCCC        3'
       o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5'

305

Arabidopsis thaliana

GAGAAGATGAAGCTGTTCTG

alignment

plot

GSM278335-4060

AT3G56950.2 cdna:known chromosome:TAIR10:3:21078297:21079856:-1 gene:AT3G56950 transcript:AT3G56950.2

0

466

0.01

19

9.5

3.5

5'     GAGAAGATGAAGCTGTTCTG         3'
       |||||||||||o|||o|  o
3' CTGCCTCTTCTACTTTGACGACTTCGGTGGCC 5'

307

Arabidopsis thaliana

TCGGACCAGGCTTCATTCCCC

alignment

plot

GSM278335-4060

AT3G48610.1 cdna:known chromosome:TAIR10:3:18011545:18014082:-1 gene:AT3G48610 transcript:AT3G48610.1

2

1621

0.04

2

3.5

5'    TCGG-ACCAGGCTTCATTCCCC        3'
      |||| ||||o|||||||| ||
3' AATAGCCGTGGTTCGAAGTAACGGAGAAATGA 5'

309

Arabidopsis thaliana

GCGTACAGAGTAGTCAAGCAT

alignment

plot

GSM278335-4060

AT1G47670.1 cdna:known chromosome:TAIR10:1:17536667:17539538:-1 gene:AT1G47670 transcript:AT1G47670.1

2

1149

0

6

2.5

5'     GCGTACAGAGTAGTCAAGCAT        3'
       ||o||||o||o|| |||||||
3' CTTACGTATGTTTCGTC-GTTCGTATGGAGGA 5'

311

Arabidopsis thaliana

TGGATTGGTCAAGGGAAGCGT

alignment

plot

GSM278335-4060

AT5G23940.1 cdna:known chromosome:TAIR10:5:8076329:8079793:-1 gene:AT5G23940 transcript:AT5G23940.1

2

714

0.03

5

3

5'     TGGATTGGTCAAGGGAAGCGT        3'
       | |||o||||||||o||| ||
3' CGGAAGCTAGCCAGTTCCTTTC-CAACTCAGC 5'

313

Arabidopsis thaliana

GCAAGATGATCACTGTGGTC

alignment

plot

GSM278335-4060

AT1G77690.1 cdna:known chromosome:TAIR10:1:29200941:29203340:-1 gene:AT1G77690 transcript:AT1G77690.1

2

963

0.03

2

1

3.5

5'     GCAAGATGATCACTGTGGTC         3'
       ||| || ||||||||o|||
3' TACTCGTACTCCTAGTGACGCCATAGAGATTT 5'

315

Arabidopsis thaliana

TGATCTCTTCGTACTCTTCTTG

alignment

plot

GSM278335-4060

AT3G11120.1 cdna:known chromosome:TAIR10:3:3481052:3481448:1 gene:AT3G11120 transcript:AT3G11120.1

2

106

0.05

6

3.5

5'     TGATCTCTTCGTACTCTTCTTG       3'
       |o|||||o||o||| ||||||
3' AGAAATTAGAGGAGTATGCGAAGAAGAAGGTG 5'

317

Arabidopsis thaliana

TTCGCTTGCAGAGAGAAATCAC

alignment

plot

GSM278335-4060

AT2G39675.1 cdna:known chromosome:TAIR10:2:16537288:16538277:-1 gene:AT2G39675 transcript:AT2G39675.1

0

379

0

110

1.5

5'     TTCGCTTGCAGAGAGAAATCAC       3'
       |||||||| |||||o|||||||
3' AGATAAGCGAACATCTCTTTTTAGTGTTGTTT 5'

319

Arabidopsis thaliana

TCATCCTCATCATCATCGTCC

alignment

plot

GSM278335-4060

AT5G37420.1 cdna:known chromosome:TAIR10:5:14840143:14842070:1 gene:AT5G37420 transcript:AT5G37420.1

2

1664

0.05

19

0.0576299

2

5'     TCATCCTCATCATCATCGTCC        3'
       ||||| |||||||||||| ||
3' TAGTAGTAGTAGTAGTAGTAGC-GGTAGTAGT 5'

321

Arabidopsis thaliana

GAGAGGAGAGAGTCTTTGTT

alignment

plot

GSM278335-4060

AT4G22670.1 cdna:known chromosome:TAIR10:4:11918080:11920910:1 gene:AT4G22670 transcript:AT4G22670.1

2

1610

0.04

9

2.5

5'     GAGAGGAGAGAGTCTTTGTT         3'
       o||||o|o||||| ||||||
3' TTGCTTCTCTTTTCTCA-AAACAAGGACAATT 5'

323

Arabidopsis thaliana

TGACAGAAGAAAGAGAGCAC

alignment

plot

GSM278370-4061

AT4G19150.1 cdna:known chromosome:TAIR10:4:10471331:10472742:-1 gene:AT4G19150 transcript:AT4G19150.1

0

1018

0.05

14

3.5

5'     TGACAGAAGAAAGAGAGCAC         3'
       | |||||| |||||o||||
3' AGTAAATGTCTT-TTTCTTTCGTTATGTCTCT 5'

325

Arabidopsis thaliana

TCGGCTTCAGCTCTTCCATC

alignment

plot

GSM278370-4061

AT5G22860.1 cdna:known chromosome:TAIR10:5:7639318:7642984:-1 gene:AT5G22860 transcript:AT5G22860.1

2

1122

0.05

2

1

3

5'     TCGGCTTCAGCTCTTCCATC         3'
       || ||| ||||||| |||||
3' ATAGAG-CGACGTCGAGACGGTAGAGGTACGC 5'

327

Arabidopsis thaliana

TGGGTTCGAGGAACGCCAAG

alignment

plot

GSM278370-4061

AT3G61470.1 cdna:known chromosome:TAIR10:3:22745653:22747282:1 gene:AT3G61470 transcript:AT3G61470.1

2

325

0.05

15

4

5'    TGGGTTCGA-GGAACGCCAAG         3'
      o||||o||| |o|| o|||||
3' CAGGCCCAGGCTACTTTCTGGTTCTCCTAGTT 5'

329

Arabidopsis thaliana

TGACAGAAGAAAGAGAGCAC

alignment

plot

GSM278370-4061

AT1G27360.3 cdna:known chromosome:TAIR10:1:9501777:9503869:1 gene:AT1G27360 transcript:AT1G27360.3

0

1250

0

24

6

1

5'     TGACAGAAGAAAGAGAGCAC         3'
       |||||||||| |||||||||
3' TCCAACTGTCTTCTCTCTCTCGTGCCACCTAT 5'

331

Arabidopsis thaliana

TTCGCTTGCAGAGAGAAATCAC

alignment

plot

GSM278370-4061

AT2G27400.1 cdna:known chromosome:TAIR10:2:11721539:11722468:-1 gene:AT2G27400 transcript:AT2G27400.1

0

379

0

29

1.5

5'     TTCGCTTGCAGAGAGAAATCAC       3'
       |||||||| |||||o|||||||
3' GAGTAAGCGAACATCTCTTTTTAGTGTTGTTT 5'

333

Arabidopsis thaliana

TGGAGCCATGGTGGGAGCTG

alignment

plot

GSM278370-4061

AT4G26550.1 cdna:known chromosome:TAIR10:4:13402515:13404345:-1 gene:AT4G26550 transcript:AT4G26550.1

0

584

0.01

20

4

5'     TGGAGCCATG-GTGGGAGCTG        3'
       o|o|| |||| ||| ||||||
3' GGTAGCTTCTGTACACACGCTCGACTAAAAAT 5'

335

Arabidopsis thaliana

AAGAAGGAGGAACAACCTGTTG

alignment

plot

GSM278370-4061

AT2G26690.1 cdna:known chromosome:TAIR10:2:11347147:11350993:-1 gene:AT2G26690 transcript:AT2G26690.1

2

644

0.01

3

5'     AAGAAGGAGGAACAACCTGTTG       3'
       || ||o||o||| |||||||||
3' ATGATTATTTCTTCTTCTTGGACAACTTCTTC 5'

337

Arabidopsis thaliana

TTAGATGACCATCAACAAACT

alignment

plot

GSM278370-4061

AT1G02860.1 cdna:known chromosome:TAIR10:1:635144:637262:1 gene:AT1G02860 transcript:AT1G02860.1

2

269

0

3

1.5

1

5'     TTAGATGACCATCAACAAACT        3'
       ||||||||||||||||||||
3' TTTAAATCTACTGGTAGTTGTTTGTTTAAGTC 5'

339

Arabidopsis thaliana

TCGGACCAGGCTTCATTCCCC

alignment

plot

GSM278370-4061

AT1G52150.1 cdna:known chromosome:TAIR10:1:19409711:19414678:-1 gene:AT1G52150 transcript:AT1G52150.1

2

1279

0

41

13.6667

2.5

5'     TCGGACCAGGCTTCATTCCCC        3'
       o||||||||||||||||||
3' CTTAGGCCTGGTCCGAAGTAAGGTCCGTAGAC 5'

341

Arabidopsis thaliana

TGGAGAAGCAGGGCACGTGCG

alignment

plot

GSM278370-4061

AT1G56010.1 cdna:known chromosome:TAIR10:1:20946571:20948040:-1 gene:AT1G56010 transcript:AT1G56010.1

2

788

0

3

1.5

2

5'     TGGAGAAGCAGGGCACGTGCG        3'
       ||||||||||||| ||||||
3' TTTAACCTCTTCGTCCCATGCACGAGTAACTA 5'

343

Arabidopsis thaliana

TGTCTTCATCGTCATCACAA

alignment

plot

GSM278370-4061

AT5G37430.1 cdna:known chromosome:TAIR10:5:14842430:14844308:1 gene:AT5G37430 transcript:AT5G37430.1

1

1789

0.02

67

4.46667

4

5'     TGTCTTCATCGTCATCACAA         3'
       oo|| |||o|o||||||| |
3' AGTAGTAGTAGTGGTAGTAGTGGTAGTAGTAG 5'

345

Arabidopsis thaliana

TTCCACAGCTTTCTTGAACTT

alignment

plot

GSM278370-4061

AT5G27850.1 cdna:known chromosome:TAIR10:5:9873152:9874598:1 gene:AT5G27850 transcript:AT5G27850.1

2

542

0.05

21

3

5'    TTCCAC-AGCTTTCTTGAACTT        3'
      |||| | ||||||||oo|||||
3' CGAAAGGAGATCGAAAGAGTTTGAAGGAAGGG 5'

347

Arabidopsis thaliana

GACAGAAGAGAGTGAGCAC

alignment

plot

GSM278370-4061

AT1G03730.1 cdna:known chromosome:TAIR10:1:930828:931895:-1 gene:AT1G03730 transcript:AT1G03730.1

2

251

0

3

0.0333333

2

5'     GACAGAAGAGAGTGAGCAC          3'
       || ||||||||| ||||||
3' TCTTCT-TCTTCTCTCTCTCGTGTTTTTTTTT 5'

349

Arabidopsis thaliana

GATGCATCTTCACCAGGTGGA

alignment

plot

GSM278370-4061

AT4G33380.1 cdna:known chromosome:TAIR10:4:16071892:16074873:1 gene:AT4G33380 transcript:AT4G33380.1

0

431

0

3

4

5'     GATGCATCTTCACCAGGTGGA        3'
       || || |||||||||o ||o|
3' CGAACT-CGAAGAAGTGGTTAACTTCTTAGTC 5'

351

Arabidopsis thaliana

TGGAGAAGCAGGGCACGTGCG

alignment

plot

GSM278370-4061

AT5G39610.1 cdna:known chromosome:TAIR10:5:15858400:15859788:-1 gene:AT5G39610 transcript:AT5G39610.1

2

781

0

6

2.5

5'     TGGAGAAGCAGGGCACGTGCG        3'
       o||||||||||| |||||| |
3' ACCAGCCTCTTCGTCCAGTGCACTCTGCTGCT 5'

353

Arabidopsis thaliana

CTTGTGGAGAGGAAGCAAGA

alignment

plot

GSM278370-4061

AT4G00230.1 cdna:known chromosome:TAIR10:4:93923:97454:1 gene:AT4G00230 transcript:AT4G00230.1

1

1459

0.01

3

3.5

5'    CTTG-TGGAGAGGAAGCAAGA         3'
      |||| ||o|o|o||||||| |
3' GGAGAACTACTTTTTCTTCGTTGTTTACCTCG 5'

355

Arabidopsis thaliana

GATGATGATGATACTCAGGA

alignment

plot

GSM278370-4061

AT3G15070.2 cdna:known chromosome:TAIR10:3:5070273:5073356:-1 gene:AT3G15070 transcript:AT3G15070.2

0

323

0.05

4

2

4

5'     GATGATGATGATACTCAGGA         3'
       | |||||||| ||||  |||
3' CGTACAACTACTACCATGACACCTCCGGGCAT 5'

357

Arabidopsis thaliana

TAGCCAAGGATGACTTGCCTG

alignment

plot

GSM278370-4061

AT1G17590.2 cdna:known chromosome:TAIR10:1:6050222:6052513:-1 gene:AT1G17590 transcript:AT1G17590.2

2

1210

0

3

0.75

2.5

5'     TAGCCAAGGATGACTTGCCTG        3'
       o||||||||||||||| |||
3' CATCGTCGGTTCCTACTGAAGGGAAAAAAACA 5'

359

Arabidopsis thaliana

TCTTCTTCGTCGCCATTACT

alignment

plot

GSM278370-4061

AT1G61065.1 cdna:known chromosome:TAIR10:1:22490244:22491461:-1 gene:AT1G61065 transcript:AT1G61065.1

2

60

0.01

11

0.0155729

2.5

5'     TCTTCTTCGTCGCCATTACT         3'
       |||||||| ||| ||o||||
3' AAGAAGAAGAAGAAGCTGTGATGACAAAGACC 5'

361

Arabidopsis thaliana

TTGGCATTCTGTCCACCTCC

alignment

plot

GSM278370-4061

AT3G12120.1 cdna:known chromosome:TAIR10:3:3860285:3863050:-1 gene:AT3G12120 transcript:AT3G12120.1

2

192

0.01

5

2.5

3

5'     TTGGCATTCTGTCCACCTCC         3'
       oo|||||||| ||||||| |
3' CCTTGGCCGTAAGA-AGGTGGACGTGGGTACA 5'

363

Arabidopsis thaliana

TAATTTGGTGTTTCTTCGATC

alignment

plot

GSM278370-4061

AT3G58820.1 cdna:known chromosome:TAIR10:3:21752533:21754615:1 gene:AT3G58820 transcript:AT3G58820.1

0

1301

0.01

2

0.666667

3.5

5'     TAATTTGGTGT-TTCTTCGATC       3'
       |||o||| ||| |||||| |||
3' AGCTATTGAACAACATAAGAAGGTAGTAGACG 5'

365

Arabidopsis thaliana

TGATTGAGCCGTGTCAATATC

alignment

plot

GSM278370-4061

AT3G60630.1 cdna:known chromosome:TAIR10:3:22410365:22412608:-1 gene:AT3G60630 transcript:AT3G60630.1

0

1056

0

30

1

5'     TGATTGAGCCGTGTCAATATC        3'
       |||||||||||o|o|||||||
3' CAACACTAACTCGGCGCGGTTATAGGGAACGC 5'

367

Arabidopsis thaliana

TCATGGTCGTGATCGTGGTCATC

alignment

plot

GSM278370-4061

AT1G47970.1 cdna:known chromosome:TAIR10:1:17687269:17688816:1 gene:AT1G47970 transcript:AT1G47970.1

2

390

0.02

4

5'     TCATGGTCGTGATCGTGGTCATC      3'
       |||| ||||| |||o| o|||||
3' TAGTAGTAGCAGCAGTAGTAGTAGTAGAGGTA 5'

369

Arabidopsis thaliana

CAAGCACAACATATCCTCTT

alignment

plot

GSM278370-4061

AT5G13030.1 cdna:known chromosome:TAIR10:5:4133204:4136688:1 gene:AT5G13030 transcript:AT5G13030.1

1

15

0

4

5'    CAAGC-ACAACATATCCTCTT         3'
      || || ||||||| || ||||
3' TGTGTGCGTTGTTGTAAAGAAGAAGGAA     5'

371

Arabidopsis thaliana

CTCTCTTTCTCCATGGCTGAC

alignment

plot

GSM278370-4061

AT1G79550.1 cdna:known chromosome:TAIR10:1:29924023:29926442:-1 gene:AT1G79550 transcript:AT1G79550.1

2

914

0.04

5

2.5

3.5

5'    CTCT-CTTTCTCCATGGCTGAC        3'
      || | |||||||||||o ||||
3' CCGGAAACGAAAGAGGTACTCACTGAAACGGT 5'

373

Arabidopsis thaliana

TCCAAAGGGATCGCATTGATCC

alignment

plot

GSM278370-4061

AT1G12820.1 cdna:known chromosome:TAIR10:1:4368760:4371293:-1 gene:AT1G12820 transcript:AT1G12820.1

0

1895

0

23

2

5'     TCCAAAGGGATCGCATTGATCC       3'
       |||||||||||||||||| | |
3' CTGTAGGTTTCCCTAGCGTAACAAAGCATGGA 5'

375

Arabidopsis thaliana

AAAGTCGCAATTCCCTTGCAACA

alignment

plot

GSM278370-4061

AT5G67030.2 cdna:known chromosome:TAIR10:5:26753522:26757236:-1 gene:AT5G67030 transcript:AT5G67030.2

2

955

0.01

2

1

4

5'    AAAGTC-GCAATTCCCTTGCAACA      3'
      |||o|| |||||o||| || ||||
3' ATATTTTAGACGTTAGGGGCACATTGTTCACA 5'

377

Arabidopsis thaliana

TTCGAGGCCTATTAAACCTCTG

alignment

plot

GSM278370-4061

AT5G54770.1 cdna:known chromosome:TAIR10:5:22246592:22248332:1 gene:AT5G54770 transcript:AT5G54770.1

2

1179

0.01

15

4

5'     TTCGAGGCCTATTAAACCTCTG       3'
       |||o||o| |||||||| o||o
3' TTTCAAGTTCTGTATAATTTGTGGATTTGAGG 5'

379

Arabidopsis thaliana

GTGACGGTGGGACGAATGTT

alignment

plot

GSM278370-4061

AT4G34830.1 cdna:known chromosome:TAIR10:4:16599605:16606027:-1 gene:AT4G34830 transcript:AT4G34830.1

0

3429

0

31

4

5'     GTGACGGTGGGACGAATGTT         3'
       |o|||| | ||| |||||o|
3' ACGACGCTGCGA-CCTCCTTACGACACTACAT 5'

381

Arabidopsis thaliana

AAACGACGTCGTTTCGTTCT

alignment

plot

GSM278370-4061

AT1G75750.1 cdna:known chromosome:TAIR10:1:28441526:28442367:-1 gene:AT1G75750 transcript:AT1G75750.1

2

419

0.02

7

3.5

3

5'     AAACGACGTCGTTTCGTTCT         3'
       |||||||o||||oo|o|| |
3' TTGTTTTGCTGTAGCAGGGTAATAGGCGTCGT 5'

383

Arabidopsis thaliana

GGAATCTTGATGATGCTGCAT

alignment

plot

GSM278370-4061

AT4G36920.1 cdna:known chromosome:TAIR10:4:17400847:17403332:1 gene:AT4G36920 transcript:AT4G36920.1

0

1340

0

18

9

2

5'     GGAATCTTGATGATGCTGCAT        3'
       o|||||o|||||||||||||
3' CCTCTCTTAGGACTACTACGACGTCGTAAACA 5'

385

Arabidopsis thaliana

GGCGCCTCTCCATTGGCAGG

alignment

plot

GSM278370-4061

AT5G19090.1 cdna:known chromosome:TAIR10:5:6387489:6390024:1 gene:AT5G19090 transcript:AT5G19090.1

0

1458

0

5

1.66667

3.5

5'     GGCGCCTCTCCATTGGCAGG         3'
       o |||||| |||||||| ||
3' GTGGTGGCGGAG-GGTAACCGGCCTTTGGACC 5'

387

Arabidopsis thaliana

GGCGCCTCTCCATTGGCAGG

alignment

plot

GSM278370-4061

AT5G13360.2 cdna:known chromosome:TAIR10:5:4283762:4286229:1 gene:AT5G13360 transcript:AT5G13360.2

0

282

0

7

1.75

3

5'     GGCGCCTCTCCATTGGCAGG         3'
       |o|| |||||||||||| |o
3' TAGTCTGCCGAGAGGTAACCG-CTATGCTAGC 5'

389

Arabidopsis thaliana

GACGGTGTCGATCGACACTG

alignment

plot

GSM278370-4061

AT5G67440.1 cdna:known chromosome:TAIR10:5:26912707:26916294:-1 gene:AT5G67440 transcript:AT5G67440.1

2

2307

0.04

4

2

4

5'     GACGGTGTCGATCGA-CACTG        3'
       |||||o||||||  | |||o|
3' TCAGCTGCCGCAGCTAAATAGTGGCTGCCATC 5'

391

Arabidopsis thaliana

TTCCACAGCTTTCTTGAACTT

alignment

plot

GSM278370-4061

AT2G22840.1 cdna:known chromosome:TAIR10:2:9728756:9731301:1 gene:AT2G22840 transcript:AT2G22840.1

2

792

0.03

39

3

5'    TTCCACA-GCTTTCTTGAACTT        3'
      ||||||| ||||||||||||
3' CGGAAGGTGTCCGAAAGAACTTGCTACCGCCG 5'

393

Arabidopsis thaliana

ACTCGACCTGGAGGTCGAGTG

alignment

plot

GSM278370-4061

AT1G07930.1 cdna:known chromosome:TAIR10:1:2458244:2460790:1 gene:AT1G07930 transcript:AT1G07930.1

2

212

0.04

3

0.6

4

5'     ACTCGACCTGGAGGTCGAGTG        3'
       ||o|o|| || ||o||o||||
3' ATGGTGGGTTGAACATCTAGTTCACAGGTCAC 5'

395

Arabidopsis thaliana

TGACAGAAGAAAGAGAGCAC

alignment

plot

GSM278370-4061

AT5G43270.2 cdna:known chromosome:TAIR10:5:17360305:17363773:-1 gene:AT5G43270 transcript:AT5G43270.2

0

1159

0

20

5.08333

1

5'     TGACAGAAGAAAGAGAGCAC         3'
       |||||||||| |||||||||
3' TTAAACTGTCTTCTCTCTCTCGTGGTAGTTCT 5'

397

Arabidopsis thaliana

TGCCTGGCTCCCTGTATGCC

alignment

plot

GSM278370-4061

AT2G28350.1 cdna:known chromosome:TAIR10:2:12114331:12116848:1 gene:AT2G28350 transcript:AT2G28350.1

0

1340

0

25

1

5'     TGCCTGGCTCCCTGTATGCC         3'
       ||||||||||||||||| ||
3' TCGAACGGACCGAGGGACATAAGGACGTCCTC 5'

399

Arabidopsis thaliana

TCGACCAGGGGGTCGAGTGAT

alignment

plot

GSM278370-4061

AT1G70730.3 cdna:known chromosome:TAIR10:1:26669020:26673166:-1 gene:AT1G70730 transcript:AT1G70730.3

2

1913

0.05

3

1

4

5'     TCGACCAGGGGGTCGAGTG-AT       3'
       ||o||||||||oo|o|| | ||
3' TTGTAGTTGGTCCCCTGGTTCTCGTAGGACTC 5'

401

Arabidopsis thaliana

TTGGACTGAAGGGAGCTCC

alignment

plot

GSM278370-4061

AT3G15030.2 cdna:known chromosome:TAIR10:3:5061681:5064038:1 gene:AT3G15030 transcript:AT3G15030.2

2

1487

0.01

12

4

2.5

5'     TTGGACTGAAGGGAGCTCC          3'
       o|||||||||||| o|o||
3' CATTGACCTGACTTCCCCTGGGGAGACTCTTA 5'

403

Arabidopsis thaliana

TAGAAGGGAGTGAGTTCTCG

alignment

plot

GSM278370-4061

AT1G08930.2 cdna:known chromosome:TAIR10:1:2873465:2877270:1 gene:AT1G08930 transcript:AT1G08930.2

2

1302

0.02

5

2.5

3

5'     TAGAAGGGAGTGAGTTCTCG         3'
        ||| ||||||||||||| |
3' TCACTTCTACCCTCACTCAAGACCTTCTTACG 5'

405

Arabidopsis thaliana

TGTTGCCGTAGCTGCAGCGGC

alignment

plot

GSM278370-4061

AT3G16100.1 cdna:known chromosome:TAIR10:3:5459172:5460790:1 gene:AT3G16100 transcript:AT3G16100.1

0

686

0

31

4

5'     TGTTGCCGTAGCTGCAGCGGC        3'
       |||||||| |||o |||| o|
3' AGAAACAACGGC-TCGGGGTCGATGTAGTTAC 5'

407

Arabidopsis thaliana

TCTATCTTCTTCGTCTTCGAT

alignment

plot

GSM278370-4061

AT4G14380.1 cdna:known chromosome:TAIR10:4:8285766:8286772:1 gene:AT4G14380 transcript:AT4G14380.1

0

457

0.04

22

11

4

5'     TCTATCTTCTTCGTCTTCGAT        3'
       ||| |||||||| |||||  |
3' AAGAAGA-AGAAGAAGAAGAAGAAAAACGAGA 5'

409

Arabidopsis thaliana

CCTCGCAAAAGTTGCGAGGGAT

alignment

plot

GSM278370-4061

AT3G19170.1 cdna:known chromosome:TAIR10:3:6625421:6632033:-1 gene:AT3G19170 transcript:AT3G19170.1

2

3376

0.04

4

1.7

4

5'     CCTCGCAAAAGTTGCGAGGGAT       3'
       ||||| |||||||| ||| | |
3' AAGTGGAGCTTTTTCAAC-CTCGCAAGTAACA 5'

411

Arabidopsis thaliana

GGTCGAGTGAAGTGATCGAGT

alignment

plot

GSM278370-4061

AT4G33010.1 cdna:known chromosome:TAIR10:4:15926670:15931332:-1 gene:AT4G33010 transcript:AT4G33010.1

2

3409

0.05

4

2

4

5'     GGTCGAGTGAAGTGATCGAGT        3'
       o ||||o||||o|o|| ||||
3' TACATAAGCTTACTTTATTATCTCATTCTCTG 5'

413

Arabidopsis thaliana

TCCTCCACCACCGAGAGCATT

alignment

plot

GSM278370-4061

AT2G32690.1 cdna:known chromosome:TAIR10:2:13863717:13864596:-1 gene:AT2G32690 transcript:AT2G32690.1

2

615

0.04

26

6.5

3.5

5'     TCCTCCACCACCGAGAGCATT        3'
       |||||||||||| |o || ||
3' CTGGAGGAGGTGGTGG-TTACGGAAATGGTTT 5'

415

Arabidopsis thaliana

AAACGACGTCGTTTCGTTCT

alignment

plot

GSM278370-4061

AT5G61400.1 cdna:known chromosome:TAIR10:5:24681550:24683514:1 gene:AT5G61400 transcript:AT5G61400.1

1

675

0.03

4

5'     AAACGACGTCGTTTCGTTCT         3'
        |||||||||o||||o| |
3' AGGGATTGCTGCAGTAAAGTA-GTTCTTCAAA 5'

417

Arabidopsis thaliana

ACATCATCATCATCATCTTCC

alignment

plot

GSM278370-4061

AT5G52300.1 cdna:known chromosome:TAIR10:5:21237056:21239529:1 gene:AT5G52300 transcript:AT5G52300.1

2

346

0.01

5

2.5

1

5'     ACATCATCATCATCATCTTCC        3'
       || ||||||||||||||||||
3' AGTATG-AGTAGTAGTAGTAGAAGGTGTAGCA 5'

419

Arabidopsis thaliana

TCCATGAAATGCCATGAGAG

alignment

plot

GSM278370-4061

AT1G77550.1 cdna:known chromosome:TAIR10:1:29138299:29143011:-1 gene:AT1G77550 transcript:AT1G77550.1

1

1269

0.02

5

4

5'     TCCATGAAATGCCATGAGAG         3'
       ||||| | ||o||||o| ||
3' AAGTAGGTAGTGTATGGTATT-TCTTCAAAGT 5'

421

Arabidopsis thaliana

GGAATCTTGATGATGCTGCAT

alignment

plot

GSM278370-4061

AT5G60120.2 cdna:known chromosome:TAIR10:5:24207689:24211743:1 gene:AT5G60120 transcript:AT5G60120.2

1

1821

0

5

2.5

1

5'     GGAATCTTGATGATGCTGCAT        3'
       o|||||o||||||||||||||
3' TCACTCTTAGGACTACTACGACGTAAACTTTT 5'

423

Arabidopsis thaliana

TCCAGTGTCGATCGACACTAG

alignment

plot

GSM278370-4061

AT4G23670.1 cdna:known chromosome:TAIR10:4:12332560:12333804:-1 gene:AT4G23670 transcript:AT4G23670.1

2

636

0.05

5

4

5'     TCCAGTGTCGATCGACACTAG        3'
       | ||o|o|||||||| | |||
3' TATTATGTTATAGCTAGCTCT-ATCACTACTG 5'

425

Arabidopsis thaliana

TAGCCAAGGATGACTTGCCTG

alignment

plot

GSM278370-4061

AT5G06510.1 cdna:known chromosome:TAIR10:5:1984991:1987044:1 gene:AT5G06510 transcript:AT5G06510.1

2

1078

0

2

0.666667

2.5

5'     TAGCCAAGGATGACTTGCCTG        3'
        ||||||o||||| |||||||
3' CGTACTCGGTTTCTACTAAACGGACAAATGTC 5'

427

Arabidopsis thaliana

TCCTCCACCACCGAGAGCAT

alignment

plot

GSM278370-4061

AT2G32690.4 cdna:known chromosome:TAIR10:2:13863717:13864596:-1 gene:AT2G32690 transcript:AT2G32690.4

2

528

0.05

26

6.5

3.5

5'     TCCTCCACCACCGAGAGCAT         3'
       |||||||||||| |o || |
3' CTGGAGGAGGTGGTGG-TTACGGAAATGGTTT 5'

429

Arabidopsis thaliana

ATGCACTGCCTCTTCCCTGGC

alignment

plot

GSM278370-4061

AT1G72230.1 cdna:known chromosome:TAIR10:1:27188066:27189244:1 gene:AT1G72230 transcript:AT1G72230.1

2

824

0.04

4

5'     ATGCACTGCCTCTTCCCTGGC        3'
       | |||||||||||  |||||
3' ATTGT-CGTGACGGAGATCGGACCAGGAAGTT 5'

431

Arabidopsis thaliana

TTTGGATTGAAGGGAGCTCTT

alignment

plot

GSM278370-4061

AT3G11440.1 cdna:known chromosome:TAIR10:3:3602093:3605104:1 gene:AT3G11440 transcript:AT3G11440.1

2

1166

0.05

12

6.75

3.5

5'     TTTGGATTGAAGGGAGCTCTT        3'
        ||||| ||||||||||||o
3' CTTATAACCTTACTTCCCTCGAGGTCGAAGTG 5'

433

Arabidopsis thaliana

GAAGTTGCGGTGAAGCGGCT

alignment

plot

GSM278370-4061

AT3G60280.1 cdna:known chromosome:TAIR10:3:22279664:22280675:-1 gene:AT3G60280 transcript:AT3G60280.1

2

104

0.01

2

3.5

5'     GAAGTTGCGGTGAAG-CGGCT        3'
       o|||||||||oo||| ||||
3' GAACTTTCAACGCCGTTTCTGCCGTCCCTGAC 5'

435

Arabidopsis thaliana

CTGGTTTAGTCACTTTCACTG

alignment

plot

GSM278370-4061

AT1G47128.1 cdna:known chromosome:TAIR10:1:17282825:17285670:-1 gene:AT1G47128 transcript:AT1G47128.1

2

577

0

12

3

5'     CTGGTTTAGTCACTTTCACTG        3'
       |||||||| || |o|o|||||
3' GCTAGACCAAATAAG-GGAGGTGACGAGGTTA 5'

437

Arabidopsis thaliana

AAGCTCAGGAGGGATAGCGCC

alignment

plot

GSM278370-4061

AT5G57735.1 cdna:known chromosome:TAIR10:5:23394005:23394500:1 gene:AT5G57735 transcript:AT5G57735.1

2

429

0.01

6

3

5'     AAGCTCAGGAGGGATAGCGCC        3'
       ||||||||||||o|||| o |
3' GTATTTCGAGTCCTCCTTATCTTTGTTGTTTG 5'

439

Arabidopsis thaliana

CTTCTCCAACATGGAGATTC

alignment

plot

GSM278370-4061

AT2G26500.2 cdna:known chromosome:TAIR10:2:11270218:11270874:1 gene:AT2G26500 transcript:AT2G26500.2

2

407

0.05

9

3

3.5

5'     CTTCTCCAACATGGAGATTC         3'
       ||||| ||||| |o|| |||
3' AGTCGAAGAAGTTGT-CTTCAAAGCTAAGCTT 5'

441

Arabidopsis thaliana

TGATTGAGCCGTGTCAATATC

alignment

plot

GSM278370-4061

AT4G00150.1 cdna:known chromosome:TAIR10:4:57199:59286:-1 gene:AT4G00150 transcript:AT4G00150.1

0

867

0

156

1

5'     TGATTGAGCCGTGTCAATATC        3'
       |||||||||||o|o|||||||
3' GACAACTAACTCGGCGCGGTTATAGGGGACTC 5'

443

Arabidopsis thaliana

TTGAGCCGTGCCAATATCACG

alignment

plot

GSM278370-4061

AT4G00150.1 cdna:known chromosome:TAIR10:4:57199:59286:-1 gene:AT4G00150 transcript:AT4G00150.1

2

864

0

11

2.5

5'     TTGAGCCGTGCCAATATCACG        3'
       ||||||||o||||||||| |
3' AACTAACTCGGCGCGGTTATAGGGGACTCGAT 5'

445

Arabidopsis thaliana

TCATGTTATGTGATTCTTCT

alignment

plot

GSM278370-4061

AT1G03360.1 cdna:known chromosome:TAIR10:1:824537:826358:1 gene:AT1G03360 transcript:AT1G03360.1

1

1001

0.03

3

4

5'     TCATGTTATGTGATTCTTCT         3'
       ||||| ||||| | | ||||
3' GTATAGTAC-ATACAGTTATAAGAAACTCAAT 5'

447

Arabidopsis thaliana

GGCGGCGGCAAACTCTACTG

alignment

plot

GSM278370-4061

AT2G13360.1 cdna:known chromosome:TAIR10:2:5539240:5541358:-1 gene:AT2G13360 transcript:AT2G13360.1

2

1306

0.05

4

2

4

5'     GGCGGCGGCAAACTCTACTG         3'
       |||o|| |||| |||o|||
3' ATCTCCGTCGACGTT-GAGGTGAAGGGTAATG 5'

449

Arabidopsis thaliana

TGGCGACGGTGGTGAGGACG

alignment

plot

GSM278370-4061

AT1G79730.1 cdna:known chromosome:TAIR10:1:30000538:30004005:-1 gene:AT1G79730 transcript:AT1G79730.1

2

1167

0.05

9

3.5

5'     TGGCGACGGTGGTGAGGACG         3'
       ||||o||o||||| ||o||
3' TTATACCGTTGTCACCA-TCTTGAAGTTGGCC 5'

451

Arabidopsis thaliana

TCGAGCACATGACATCCAGA

alignment

plot

GSM278370-4061

AT1G67340.1 cdna:known chromosome:TAIR10:1:25230265:25231840:1 gene:AT1G67340 transcript:AT1G67340.1

0

867

0.02

6

4

5'     TCGAGCACATGACATCCAGA         3'
       o|| | |||| |||||||o|
3' CCACGGC-CATGTAATGTAGGTTTTAGTGATT 5'

453

Arabidopsis thaliana

TGTGTTCTCAGGTCACCCCTT

alignment

plot

GSM278370-4061

AT3G27200.1 cdna:known chromosome:TAIR10:3:10043522:10044373:-1 gene:AT3G27200 transcript:AT3G27200.1

0

269

0

54

4

5'    TG-TGTTCTCAGGTCACCCCTT        3'
      || |||||o||||||||  ||o
3' TTGACTACAAGGGTCCAGTGTTGAGAACATAC 5'

455

Arabidopsis thaliana

TTCTTCCGCCGCTTGGAGTC

alignment

plot

GSM278370-4061

AT2G23670.1 cdna:known chromosome:TAIR10:2:10063155:10063863:-1 gene:AT2G23670 transcript:AT2G23670.1

2

395

0.05

3

4

5'     TTCTTCCGCCGCTTGGAGTC         3'
       o|| ||||||||||  |o||
3' TGGAGAG-AGGCGGCGAAGATTAGGAAAGAGG 5'

457

Arabidopsis thaliana

TTTCGTTGTCTGTTCGACCTT

alignment

plot

GSM278370-4061

AT1G06180.1 cdna:known chromosome:TAIR10:1:1889408:1891158:1 gene:AT1G06180 transcript:AT1G06180.1

2

403

0.01

4

3

5'     TTTCGTTGTCTGTTCGACCTT        3'
       |||||||||||||||| ||
3' AATTAAAGCAACAGACAAGCAGGTCCGTTAAA 5'

459

Arabidopsis thaliana

TGACAGAAGAGAGTTAGCAC

alignment

plot

GSM278370-4061

AT2G33810.1 cdna:known chromosome:TAIR10:2:14305001:14306072:1 gene:AT2G33810 transcript:AT2G33810.1

2

797

0

4

2

5'     TGACAGAAGAGAGTTAGCAC         3'
       |||||||||||||| ||||
3' TCTGACTGTCTTCTCTCATTCGTTTCGGACAA 5'

461

Arabidopsis thaliana

TCAATGCATTGAAAGTGACTA

alignment

plot

GSM278370-4061

AT4G24230.4 cdna:known chromosome:TAIR10:4:12566944:12568767:-1 gene:AT4G24230 transcript:AT4G24230.4

0

1269

0.01

4

0.8

4

5'     TCAATGCATT-GAAAGTGACTA       3'
       ||||||||o| |||| oo||o|
3' TATTAGTTACGTGATCTTTAGTTGGTCAGGAG 5'

463

Arabidopsis thaliana

GGAATCTTGATGATGCTGCAT

alignment

plot

GSM278370-4061

AT3G54990.1 cdna:known chromosome:TAIR10:3:20373718:20376522:-1 gene:AT3G54990 transcript:AT3G54990.1

0

976

0

3

1.5

5'     GGAATCTTGATGATGCTGCAT        3'
       ||||||o|||||||||||||
3' TTTCCCTTAGGACTACTACGACGTTGACAGAA 5'

465

Arabidopsis thaliana

CCGACCCGAATACCCGAACG

alignment

plot

GSM278370-4061

AT5G57685.1 cdna:known chromosome:TAIR10:5:23366004:23366867:-1 gene:AT5G57685 transcript:AT5G57685.1

2

609

0

3

1.5

5'     CCGACCCGAATACCCGAACG         3'
       ||o|||||||||||||| ||
3' ACTAGGTTGGGCTTATGGGCT-GCGTTGGCCC 5'

467

Arabidopsis thaliana

TTGGACTGAAGGGAGCTCC

alignment

plot

GSM278370-4061

AT1G53230.1 cdna:known chromosome:TAIR10:1:19849788:19851725:-1 gene:AT1G53230 transcript:AT1G53230.1

2

1195

0.01

4

3

5'     TTGGACTGAAGGGAGCTCC          3'
        |||||||||||| o|o||
3' CAATTACCTGACTTCCCCTGGGGAGACACTAT 5'

469

Arabidopsis thaliana

GACGAAGAAGATGGTGATGTGAT

alignment

plot

GSM278370-4061

AT1G21380.1 cdna:known chromosome:TAIR10:1:7485636:7488713:-1 gene:AT1G21380 transcript:AT1G21380.1

2

1743

0.01

3

3.5

5'     GACGAAGAAGATGGTGATGTGAT      3'
       || ||||||||||o||||||  |
3' AAACCTCCTTCTTCTACTACTACAGGACCAAA 5'

471

Arabidopsis thaliana

AGAGAAACCCAACAGCATCAT

alignment

plot

GSM278370-4061

AT1G69160.1 cdna:known chromosome:TAIR10:1:26000214:26001588:1 gene:AT1G69160 transcript:AT1G69160.1

0

1181

0.02

18

4

5'     AGAGAAACCCAACAGCATCAT        3'
        o|||||||||| |o||| ||
3' TTAGGTTCTTTGGGTTTTTGTA-TATTGAATA 5'

473

Arabidopsis thaliana

TCGGACCAGGCTTCATCCCCC

alignment

plot

GSM278370-4061

AT1G30490.1 cdna:known chromosome:TAIR10:1:10796135:10800961:-1 gene:AT1G30490 transcript:AT1G30490.1

2

806

0

23

11.5

2.5

5'     TCGGACCAGGCTTCATCCCCC        3'
       o||||||||||||||||||
3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAGAC 5'

475

Arabidopsis thaliana

TGAAAGTGACTACATCGGGGT

alignment

plot

GSM278370-4061

AT3G14067.1 cdna:known chromosome:TAIR10:3:4658198:4660784:-1 gene:AT3G14067 transcript:AT3G14067.1

2

1728

0.03

2

4

5'     TGAAAGTGACTACATCGGGGT        3'
       || | |||||o| ||||||o|
3' AACGACGTCCACTGGT-TAGCCCTACTCGAAA 5'

477

Arabidopsis thaliana

TACCATCTCTTGAGGAACTTGG

alignment

plot

GSM278370-4061

AT1G07930.2 cdna:known chromosome:TAIR10:1:2458244:2460790:1 gene:AT1G07930 transcript:AT1G07930.2

2

1042

0.04

7

1.4

4

5'     TACCATCTCTTGAGGAACTTGG       3'
       o||||| |||| |o||| ||||
3' CGTAGTGGTA-AGAAGTTCTTAAACCCGAGGA 5'

479

Arabidopsis thaliana

TGACAGAAGAAAGAGAGCAC

alignment

plot

GSM278370-4061

AT1G69170.1 cdna:known chromosome:TAIR10:1:26005068:26007263:1 gene:AT1G69170 transcript:AT1G69170.1

2

1307

0

6

1

5'     TGACAGAAGAAAGAGAGCAC         3'
       |||||||||| |||||||||
3' CTCGACTGTCTTCTCTCTCTCGTGCTCATCTC 5'

481

Arabidopsis thaliana

TCGGACCAGGCTTCATCCCCC

alignment

plot

GSM278370-4061

AT2G34710.1 cdna:known chromosome:TAIR10:2:14639323:14644273:-1 gene:AT2G34710 transcript:AT2G34710.1

2

881

0

28

16.5

2.5

5'     TCGGACCAGGCTTCATCCCCC        3'
       o||||||||||||||||||
3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAGAC 5'

483

Arabidopsis thaliana

GAGAAGATGAAGCTGTTCTG

alignment

plot

GSM278370-4061

AT3G56950.2 cdna:known chromosome:TAIR10:3:21078297:21079856:-1 gene:AT3G56950 transcript:AT3G56950.2

0

466

0.01

12

6

3.5

5'     GAGAAGATGAAGCTGTTCTG         3'
       |||||||||||o|||o|  o
3' CTGCCTCTTCTACTTTGACGACTTCGGTGGCC 5'

485

Arabidopsis thaliana

ACTCGACCACGAAGTCGAGT

alignment

plot

GSM278370-4061

AT4G01320.1 cdna:known chromosome:TAIR10:4:545796:549261:1 gene:AT4G01320 transcript:AT4G01320.1

0

506

0

29

3

5'     ACTCGACCACGAA-GTCGAGT        3'
       |||||| |||||| || ||||
3' GCTCTGAGCTAGTGCTTTCAACTCATGTTTCT 5'

487

Arabidopsis thaliana

TCATCTTCATCATCATCGTCA

alignment

plot

GSM278370-4061

AT2G31210.1 cdna:known chromosome:TAIR10:2:13296143:13298277:1 gene:AT2G31210 transcript:AT2G31210.1

1

1161

0.02

4

0.444444

3

5'     TCATCTTCATCATCATCGTCA        3'
       |||||||||| |o||| o|||
3' TAGTAGTAGAAGTAATGGTACTAGTAGGTTCA 5'

489

Arabidopsis thaliana

TTCGCTTGCAGAGAGAAATCAC

alignment

plot

GSM278370-4061

AT2G39675.1 cdna:known chromosome:TAIR10:2:16537288:16538277:-1 gene:AT2G39675 transcript:AT2G39675.1

0

379

0

56

1.5

5'     TTCGCTTGCAGAGAGAAATCAC       3'
       |||||||| |||||o|||||||
3' AGATAAGCGAACATCTCTTTTTAGTGTTGTTT 5'

491

Arabidopsis thaliana

CGGCTCTGATACCAATTGATG

alignment

plot

GSM278370-4061

AT2G40000.1 cdna:known chromosome:TAIR10:2:16700510:16702028:-1 gene:AT2G40000 transcript:AT2G40000.1

2

297

0.04

4

5'     CGGCTCTGATACCAATTGATG        3'
       ||||||||||  | ||||| |
3' CTTAGCCGAGACTACAGGTAACTCCTTTTAGT 5'

493

Arabidopsis thaliana

TGCCTGGCTCCCTGTATGCC

alignment

plot

GSM278370-4061

AT4G30080.1 cdna:known chromosome:TAIR10:4:14703201:14706336:-1 gene:AT4G30080 transcript:AT4G30080.1

1

1519

0

6

1.5

5'     TGCCTGGCTCCCTGTATGCC         3'
       |||||||||||||||| o||
3' TAATACGGACCGAGGGACATTTGGGTGCCCTT 5'

495

Glycine max

CCGGAAGAGGAAAATTAAGCAA

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA12G12210.5 cdna:novel chromosome:V1.0:Gm12:10353968:10359433:-1 gene:GLYMA12G12210 transcript:GLYMA12G12210.5

2

1143

0.04

16

1.77778

3.5

5'     CCGGAAGAGGAA-AATTAAGCAA      3'
        |o||||||||| |||||||| |
3' TACTCGTCTTCTCCTTCTTAATTCGATAACAA 5'

497

Glycine max

ACGGACACCGAACACGACACGGAC

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA17G05840.3 cdna:known chromosome:V1.0:Gm17:4116203:4118256:-1 gene:GLYMA17G05840 transcript:GLYMA17G05840.3

2

1309

0

26

2

5'     ACGGACACCGAACACGACACGGAC     3'
       |||o|||||| |||||||||o|||
3' GCTGTGCTTGTGGCCTGTGCTGTGTCTGTGAA 5'

499

Glycine max

TTTGGATTGAAGGGAGCTC

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA06G47000.2 cdna:novel chromosome:V1.0:Gm06:49543622:49548924:-1 gene:GLYMA06G47000 transcript:GLYMA06G47000.2

0

1343

0

60

15

1

5'     TTTGGATTGAAGGGAGCTC          3'
       |||||| ||||||||||||
3' CCTTAAACCTCACTTCCCTCGAGACTGAAGTG 5'

501

Glycine max

TGACAGAAGAGAGTGAGCAC

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA02G13371.2 cdna:novel chromosome:V1.0:Gm02:11670695:11677264:-1 gene:GLYMA02G13371 transcript:GLYMA02G13371.2

2

1398

0

30

6

1

5'     TGACAGAAGAGAGTGAGCAC         3'
       ||||||||||||| ||||||
3' CTAGACTGTCTTCTCTCTCTCGTGTCGAACTA 5'

503

Glycine max

TTCCACAGCTTTCTTGAAC

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA14G10090.1 cdna:novel chromosome:V1.0:Gm14:8190765:8195025:-1 gene:GLYMA14G10090 transcript:GLYMA14G10090.1

2

1104

0

49

16.3333

1

5'    TTCCACA-GCTTTCTTGAAC          3'
      ||||||| ||||||||||||
3' CGGAAGGTGTCCGAAAGAACTTGCTACCGCAG 5'

505

Glycine max

TCATCATCATCATCTTCTTCT

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA03G32020.3 cdna:novel chromosome:V1.0:Gm03:39830110:39837209:-1 gene:GLYMA03G32020 transcript:GLYMA03G32020.3

2

824

0

48

0

5'     TCATCATCATCATCTTCTTCT        3'
       |||||||||||||||||||||
3' AAGGAGTAGTAGTAGTAGAAGAAGAACGACAC 5'

507

Glycine max

TCGGACCAGGCTTCATTCC

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA12G08080.1 cdna:novel chromosome:V1.0:Gm12:5801673:5808673:1 gene:GLYMA12G08080 transcript:GLYMA12G08080.1

1

1424

0

60

30

1

5'     TCGGACCAGGCTTCATTCC          3'
       o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTCCGTAGAC 5'

509

Glycine max

TTCCACAGCTTTCTTGAAC

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA19G37740.1 cdna:novel chromosome:V1.0:Gm19:44838730:44842363:1 gene:GLYMA19G37740 transcript:GLYMA19G37740.1

1

943

0

30

7.5

1

5'    TTCCACA-GCTTTCTTGAAC          3'
      ||||||| ||||||||||||
3' ATCAAGGTGTCCGAAAGAACTTGCCAAAGAAG 5'

511

Glycine max

TTTGGATTGAAGGGAGCTCT

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA19G40720.1 cdna:novel chromosome:V1.0:Gm19:47059021:47063814:1 gene:GLYMA19G40720 transcript:GLYMA19G40720.1

2

2608

0.03

6

3

2.5

5'     TTTGGATTGAAGGGAGCTCT         3'
       ||||||o||| |||| ||||
3' ACGGAAACCTGACTCCCCTGGAGAACGTGGTC 5'

513

Glycine max

TGAAGCTGCCAGCATGATCT

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA13G29320.1 cdna:novel chromosome:V1.0:Gm13:32246000:32253054:1 gene:GLYMA13G29320 transcript:GLYMA13G29320.1

0

3359

0.01

60

15

3

5'     TGAAGCTGCCAGCATGATCT         3'
         ||||||||||| ||||||
3' TTTATGTTCGACGGTCGGACTAGAGTGTCCCA 5'

515

Glycine max

TGAAGCTGCCAGCATGATCT

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA08G23930.2 cdna:known chromosome:V1.0:Gm08:18227872:18233848:1 gene:GLYMA08G23930 transcript:GLYMA08G23930.2

2

439

0.04

28

7

3

5'     TGAAGCTGCCAGCATGATCT         3'
       |||||||| ||||| o|o||
3' GTCTACTTCGAC-GTCGTCTTGGACTACAAAA 5'

517

Glycine max

TTCCACAGCTTTCTTGAAC

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA03G35010.3 cdna:novel chromosome:V1.0:Gm03:42329293:42333139:1 gene:GLYMA03G35010 transcript:GLYMA03G35010.3

2

1191

0

30

7.5

1

5'    TTCCACA-GCTTTCTTGAAC          3'
      ||||||| ||||||||||||
3' ATCAAGGTGTCCGAAAGAACTTGCCAAAGAAG 5'

519

Glycine max

CTTGTTTGTGGTGATGTCT

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA08G22920.2 cdna:novel chromosome:V1.0:Gm08:17432371:17433466:1 gene:GLYMA08G22920 transcript:GLYMA08G22920.2

1

280

0

13

2.5

5'     CTTGTTTGTGGTGATGTCT          3'
       ||||||o|o||o|| ||||
3' GCCGGAACAAGCGCCGCT-CAGAGAACTCCAT 5'

521

Glycine max

TGAAGCTGCCAGCATGATCT

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA02G40650.2 cdna:novel chromosome:V1.0:Gm02:45888235:45899367:-1 gene:GLYMA02G40650 transcript:GLYMA02G40650.2

0

2942

0.01

60

15

3

5'     TGAAGCTGCCAGCATGATCT         3'
         ||||||||||| ||||||
3' CTTATGTTCGACGGTCGGACTAGATTCTCCCA 5'

523

Glycine max

TGCCTGGCTCCCTGTATGCC

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA10G35481.1 cdna:novel chromosome:V1.0:Gm10:43704337:43707929:1 gene:GLYMA10G35481 transcript:GLYMA10G35481.1

2

1609

0

60

15

0

5'     TGCCTGGCTCCCTGTATGCC         3'
       ||||||||||||||||||||
3' TCGTACGGACCGAGGGACATACGGAGGTCTTG 5'

525

Glycine max

TCGGACCAGGCTTCATTCCC

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA05G30000.1 cdna:novel chromosome:V1.0:Gm05:35421769:35428492:1 gene:GLYMA05G30000 transcript:GLYMA05G30000.1

2

1080

0

60

12

1.5

5'     TCGGACCAGGCTTCATTCCC         3'
       o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5'

527

Glycine max

TGTGTTCTCAGGTCGCCCCT

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA03G40280.3 cdna:known chromosome:V1.0:Gm03:46076955:46080391:1 gene:GLYMA03G40280 transcript:GLYMA03G40280.3

2

156

0.02

26

13

2.5

5'     TGTGTTCTCAGGTCGCCCCT         3'
       |||| ||||||| |o|||||
3' AGTTACACTAGAGTCCCGTGGGGAATCTGTCT 5'

529

Glycine max

TCGGACCAGGCTTCATTCC

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA09G02750.1 cdna:novel chromosome:V1.0:Gm09:1901637:1907522:-1 gene:GLYMA09G02750 transcript:GLYMA09G02750.1

2

968

0

60

12

1

5'     TCGGACCAGGCTTCATTCC          3'
       o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAGAC 5'

531

Glycine max

TTGAGCCGTGCCAATATCA

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA03G03760.2 cdna:novel chromosome:V1.0:Gm03:3581308:3584468:-1 gene:GLYMA03G03760 transcript:GLYMA03G03760.2

0

1642

0

60

20

1.5

5'     TTGAGCCGTGCCAATATCA          3'
       ||||||||o|||||||||
3' CACTAACTCGGCGCGGTTATAGGGAACGCGTA 5'

533

Glycine max

TTCCACAGCTTTCTTGAAC

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA11G01060.1 cdna:novel chromosome:V1.0:Gm11:573836:577693:1 gene:GLYMA11G01060 transcript:GLYMA11G01060.1

2

486

0

60

12

1

5'    TTCCACA-GCTTTCTTGAAC          3'
      ||||||| ||||||||||||
3' ACTAAGGTGTCCGAAAGAACTTGCCAACGCCG 5'

535

Glycine max

TGCCTGGCTCCCTGTATGCC

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA12G08110.1 cdna:novel chromosome:V1.0:Gm12:5840398:5844362:-1 gene:GLYMA12G08110 transcript:GLYMA12G08110.1

2

1640

0

60

15

1

5'     TGCCTGGCTCCCTGTATGCC         3'
       ||||||||||||||||| ||
3' TCGTACGGACCGAGGGACATAGGGACGTCCTC 5'

537

Glycine max

TCGGACCAGGCTTCATTCCC

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA15G13640.1 cdna:novel chromosome:V1.0:Gm15:10250637:10256541:-1 gene:GLYMA15G13640 transcript:GLYMA15G13640.1

2

945

0.02

60

6

1.5

5'     TCGGACCAGGCTTCATTCCC         3'
       o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5'

539

Glycine max

TTGAGCCGTGCCAATATCA

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA14G17863.1 cdna:novel chromosome:V1.0:Gm14:19931432:19937024:-1 gene:GLYMA14G17863 transcript:GLYMA14G17863.1

0

305

0.05

23

7.66667

4

5'     TTGAGCCGTGCCAATATCA          3'
       || ||||o|| |||o |||
3' TTACAA-TCGGTACAGTTGAAGTAGCATTAGG 5'

541

Glycine max

TGATTGAGCCGTGCCAATAT

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA01G18040.1 cdna:novel chromosome:V1.0:Gm01:22484145:22487576:-1 gene:GLYMA01G18040 transcript:GLYMA01G18040.1

1

1771

0

60

30

0.5

5'     TGATTGAGCCGTGCCAATAT         3'
       |||||||||||o||||||||
3' AACCACTAACTCGGCGCGGTTATAGGGTACGC 5'

543

Glycine max

TGCCTGGCTCCCTGTATGCC

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA14G33730.1 cdna:novel chromosome:V1.0:Gm14:41889885:41894154:1 gene:GLYMA14G33730 transcript:GLYMA14G33730.1

0

1184

0

60

30

0.5

5'     TGCCTGGCTCCCTGTATGCC         3'
       ||||||||||||||o|||||
3' TAGTACGGACCGAGGGACGTACGGTCGTCCTT 5'

545

Glycine max

TGATTGAGCCGTGCCAATAT

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA01G33270.1 cdna:novel chromosome:V1.0:Gm01:45164207:45167759:-1 gene:GLYMA01G33270 transcript:GLYMA01G33270.1

2

1211

0

50

16.6667

0.5

5'     TGATTGAGCCGTGCCAATAT         3'
       |||||||||||o||||||||
3' GACCACTAACTCGGCGCGGTTATAGGGAACGC 5'

547

Glycine max

TTCCACAGCTTTCTTGAAC

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA17G35100.2 cdna:novel chromosome:V1.0:Gm17:39088426:39092940:1 gene:GLYMA17G35100 transcript:GLYMA17G35100.2

2

1159

0

49

16.3333

1

5'    TTCCACA-GCTTTCTTGAAC          3'
      ||||||| ||||||||||||
3' CGGAAGGTGTCCGAAAGAACTTGCTACCGCAG 5'

549

Glycine max

TTCCACAGCTTTCTTGAAC

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA01G34650.2 cdna:novel chromosome:V1.0:Gm01:47081811:47085604:1 gene:GLYMA01G34650 transcript:GLYMA01G34650.2

2

793

0

30

10

1

5'    TTCCACA-GCTTTCTTGAAC          3'
      ||||||| ||||||||||||
3' ACAAAGGTGTCCGAAAGAACTTGCTAAAGCTG 5'

551

Glycine max

TTCCACAGCTTTCTTGAAC

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA01G35145.1 cdna:novel chromosome:V1.0:Gm01:47696214:47700220:1 gene:GLYMA01G35145 transcript:GLYMA01G35145.1

1

556

0

60

30

1

5'    TTCCACA-GCTTTCTTGAAC          3'
      ||||||| ||||||||||||
3' ACTAAGGTGTCCGAAAGAACTTGCCATTGCGG 5'

553

Glycine max

TGAAGCTGCCAGCATGATCTGA

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA14G38940.1 cdna:novel chromosome:V1.0:Gm14:48094947:48103242:-1 gene:GLYMA14G38940 transcript:GLYMA14G38940.1

2

2943

0.05

53

29

3.5

5'     TGAAGCTGCCAGCATGATCTGA       3'
         ||||||||||| ||||||o|
3' CTTATGTTCGACGGTCGGACTAGATTCTCCCA 5'

555

Glycine max

TCAAAGGGAGTTGTAGGGGAA

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA13G09530.1 cdna:known chromosome:V1.0:Gm13:10956703:10963280:-1 gene:GLYMA13G09530 transcript:GLYMA13G09530.1

2

369

0.03

30

15

3.5

5'     TCAAAGGGAGTTGTAGGGGAA        3'
        |||||||||||| ||o|||
3' ATGCCGTTTCCCTCAACTTCTCCTAGAAGTTT 5'

557

Glycine max

TGACAGAAGAGAGTGAGCAC

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA01G08056.2 cdna:novel chromosome:V1.0:Gm01:9051047:9057050:-1 gene:GLYMA01G08056 transcript:GLYMA01G08056.2

2

1284

0

30

6

1

5'     TGACAGAAGAGAGTGAGCAC         3'
       ||||||||||||| ||||||
3' CTAGACTGTCTTCTCTCTCTCGTGTCGAACTA 5'

559

Glycine max

TTTGGATTGAAGGGAGCTC

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA13G25716.2 cdna:novel chromosome:V1.0:Gm13:28929349:28934215:1 gene:GLYMA13G25716 transcript:GLYMA13G25716.2

2

1830

0.01

10

2

5'     TTTGGATTGAAGGGAGCTC          3'
        ||||| ||||||||||||
3' CCTATAACCTCACTTCCCTCGAGGTTGAAGTA 5'

561

Glycine max

TTGACAGAAGATAGAGAGCAC

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA18G00903.1 cdna:novel chromosome:V1.0:Gm18:426939:431809:1 gene:GLYMA18G00903 transcript:GLYMA18G00903.1

1

2437

0

60

1

5'     TTGACAGAAGATAGAGAGCAC        3'
       ||||||||||| |||||||||
3' AAGCAACTGTCTTCTCTCTCTCGTGCCAATTG 5'

563

Glycine max

TGATTGAGCCGTGCCAATAT

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA11G17490.1 cdna:novel chromosome:V1.0:Gm11:13613694:13616986:1 gene:GLYMA11G17490 transcript:GLYMA11G17490.1

1

1661

0

60

30

0.5

5'     TGATTGAGCCGTGCCAATAT         3'
       |||||||||||o||||||||
3' AACCACTAACTCGGCGCGGTTATAGGGCACGC 5'

565

Glycine max

TGGAGAAGCAGGGCACGTGCA

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA06G21020.1 cdna:known chromosome:V1.0:Gm06:17431771:17433898:1 gene:GLYMA06G21020 transcript:GLYMA06G21020.1

2

1106

0.02

23

4.6

2.5

5'     TGGAGAAGCAGGGCACGTGCA        3'
       ||||||||||||||||||o
3' CCTAACCTCTTCGTCCCGTGCATTCGTCTTAG 5'

567

Glycine max

TTCCACAGCTTTCTTGAAC

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA07G05370.1 cdna:novel chromosome:V1.0:Gm07:4014246:4016764:1 gene:GLYMA07G05370 transcript:GLYMA07G05370.1

0

594

0.02

11

5.5

3

5'     TTCCACAGCTTTCTTGAAC          3'
       |||| ||| |||||||| |
3' ACGAAAGG-GTCCAAAGAACTAGTTCGTTGTA 5'

569

Glycine max

TTGAGCCGTGCCAATATCA

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA11G17490.1 cdna:novel chromosome:V1.0:Gm11:13613694:13616986:1 gene:GLYMA11G17490 transcript:GLYMA11G17490.1

2

1658

0

48

24

1.5

5'     TTGAGCCGTGCCAATATCA          3'
       ||||||||o|||||||||
3' CACTAACTCGGCGCGGTTATAGGGCACGCGCT 5'

571

Glycine max

TTGACAGAAGATAGAGAGCAC

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA17G08840.2 cdna:novel chromosome:V1.0:Gm17:6526544:6532020:-1 gene:GLYMA17G08840 transcript:GLYMA17G08840.2

1

1901

0

60

15

2

5'     TTGACAGAAGATAGAGAGCAC        3'
        |||||||||| |||||||||
3' ACTCTACTGTCTTCTCTCTCTCGTGTTGTTCT 5'

573

Glycine max

CCGGAAGAGGAAAATTAAGCAA

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA06G45080.4 cdna:novel chromosome:V1.0:Gm06:47855010:47859775:1 gene:GLYMA06G45080 transcript:GLYMA06G45080.4

2

1725

0.02

16

1.77778

3.5

5'     CCGGAAGAGGAA-AATTAAGCAA      3'
        |o||||||||| |||||||| |
3' TACTCGTCTTCTCCTTATTAATTCGATAACAA 5'

575

Glycine max

TCGCTTGGTGCAGGTCGGGAA

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA05G25150.1 cdna:novel chromosome:V1.0:Gm05:31295886:31298052:1 gene:GLYMA05G25150 transcript:GLYMA05G25150.1

0

974

0.01

30

10

3.5

5'    TCGCTTGG-TGCAGGTCGGGAA        3'
      | |||||| |||||oo|o||||
3' ATCAACGAACCGACGTCTGGTCCTTGCTCTCT 5'

577

Glycine max

TGGAGAAGCAGGGCACGTGCA

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA04G33270.1 cdna:novel chromosome:V1.0:Gm04:38776490:38778616:-1 gene:GLYMA04G33270 transcript:GLYMA04G33270.1

2

1066

0.04

23

4.6

3.5

5'     TGGAGAAGCAGGGCACGTGCA        3'
       ||||||||||||| ||||o
3' CCTAACCTCTTCGTCCCATGCATTCGGCATAG 5'

579

Glycine max

TCCAAAGGGATCGCATTGATC

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA03G36770.1 cdna:novel chromosome:V1.0:Gm03:43630257:43634178:1 gene:GLYMA03G36770 transcript:GLYMA03G36770.1

2

1806

0

14

7

1

5'     TCCAAAGGGATCGCATTGATC        3'
       |||||||||||||||||| ||
3' CTGTAGGTTTCCCTAGCGTAAC-AGAGGTCGA 5'

581

Glycine max

TCGGACCAGGCTTCATTCCC

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA06G09100.1 cdna:novel chromosome:V1.0:Gm06:6696969:6703161:1 gene:GLYMA06G09100 transcript:GLYMA06G09100.1

2

957

0

60

6

1.5

5'     TCGGACCAGGCTTCATTCCC         3'
       o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAAA 5'

583

Glycine max

TGCCTGGCTCCCTGTATGCC

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA10G06080.2 cdna:novel chromosome:V1.0:Gm10:4819433:4824893:-1 gene:GLYMA10G06080 transcript:GLYMA10G06080.2

0

2010

0

60

15

0.5

5'     TGCCTGGCTCCCTGTATGCC         3'
       ||||||||||||||o|||||
3' TCGTACGGACCGAGGGACGTACGGTCGTCCAC 5'

585

Glycine max

CTTTGTATTCTTCCACAGCTT

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA12G32780.4 cdna:novel chromosome:V1.0:Gm12:36201283:36214886:-1 gene:GLYMA12G32780 transcript:GLYMA12G32780.4

1

1899

0.01

30

5

4

5'     CTTTGTATTCTTCCACAGCTT        3'
       ||||||| || ||||| | ||
3' CTAAGAAACATCAGTAGGTG-CTAAGTTGTCA 5'

587

Glycine max

TTCCACAGCTTTCTTGAAC

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA06G13960.2 cdna:novel chromosome:V1.0:Gm06:11041407:11044426:1 gene:GLYMA06G13960 transcript:GLYMA06G13960.2

2

713

0

41

8.2

1

5'    TTCCACA-GCTTTCTTGAAC          3'
      ||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCCCCTGCCG 5'

589

Glycine max

TTGACAGAAGATAGAGAGCAC

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA18G36960.1 cdna:novel chromosome:V1.0:Gm18:43828448:43833563:1 gene:GLYMA18G36960 transcript:GLYMA18G36960.1

2

902

0

20

1

5'     TTGACAGAAGATAGAGAGCAC        3'
       ||||||||||| |||||||||
3' ACAGAACTGTCTTCTCTCTCTCGTGTCAAACT 5'

591

Glycine max

CAGAGAGCAGAAACAGAACTG

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA01G35410.1 cdna:novel chromosome:V1.0:Gm01:47910024:47911708:-1 gene:GLYMA01G35410 transcript:GLYMA01G35410.1

0

705

0.05

30

4

5'     CAGAGAGCAGAAACAGAACTG        3'
       |||| |o|||||| ||| |o|
3' CTTCGTCT-TTGTCTTTCTCTGGGCAGAAATC 5'

593

Glycine max

TCCAAAGGGATCGCATTGATC

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA19G39420.1 cdna:novel chromosome:V1.0:Gm19:46102119:46105994:1 gene:GLYMA19G39420 transcript:GLYMA19G39420.1

2

1788

0

14

7

1

5'     TCCAAAGGGATCGCATTGATC        3'
       |||||||||||||||||| ||
3' CTGTAGGTTTCCCTAGCGTAAC-AGAGGTCGA 5'

595

Glycine max

TGCCTGGCTCCCTGTATGCC

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA13G40030.1 cdna:novel chromosome:V1.0:Gm13:40591013:40594198:1 gene:GLYMA13G40030 transcript:GLYMA13G40030.1

1

1779

0

30

0

5'     TGCCTGGCTCCCTGTATGCC         3'
       ||||||||||||||||||||
3' TCTTACGGACCGAGGGACATACGGACGTCCTC 5'

597

Glycine max

TTCCACAGCTTTCTTGAACTT

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA04G40880.4 cdna:novel chromosome:V1.0:Gm04:46789378:46792991:-1 gene:GLYMA04G40880 transcript:GLYMA04G40880.4

2

1141

0.04

41

8.2

3

5'    TTCCACA-GCTTTCTTGAACTT        3'
      ||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCCCCTGCCG 5'

599

Glycine max

TTCCACAGCTTTCTTGAAC

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA09G07990.1 cdna:novel chromosome:V1.0:Gm09:7003261:7005873:-1 gene:GLYMA09G07990 transcript:GLYMA09G07990.1

2

486

0

60

12

1

5'    TTCCACA-GCTTTCTTGAAC          3'
      ||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCTAAGAAGG 5'

601

Glycine max

TCATCATCATCATCATCTTCA

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA20G23790.1 cdna:novel chromosome:V1.0:Gm20:33530315:33537439:-1 gene:GLYMA20G23790 transcript:GLYMA20G23790.1

2

568

0.01

3

1

5'     TCATCATCATCATCATCTTCA        3'
       || ||||||||||||||||||
3' TAGGAGGAGTAGTAGTAGTAGAAGTAGTAGTA 5'

603

Glycine max

TGCCTGGCTCCCTGTATGCC

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA19G36571.1 cdna:novel chromosome:V1.0:Gm19:43842474:43846765:-1 gene:GLYMA19G36571 transcript:GLYMA19G36571.1

0

2324

0

41

0

5'     TGCCTGGCTCCCTGTATGCC         3'
       ||||||||||||||||||||
3' TCGTACGGACCGAGGGACATACGGTCGTCCTC 5'

605

Glycine max

TTCCACAGCTTTCTTGAAC

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA10G07790.2 cdna:novel chromosome:V1.0:Gm10:6583388:6586706:1 gene:GLYMA10G07790 transcript:GLYMA10G07790.2

0

646

0

60

1

5'    TTCCACA-GCTTTCTTGAAC          3'
      ||||||| ||||||||||||
3' AACAAGGTGTCCGAAAGAACTTGCCAAGGCCG 5'

607

Glycine max

TGCCTGGCTCCCTGTATGCC

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA09G28360.2 cdna:novel chromosome:V1.0:Gm09:35348339:35353261:1 gene:GLYMA09G28360 transcript:GLYMA09G28360.2

2

2521

0

60

15

0.5

5'     TGCCTGGCTCCCTGTATGCC         3'
       ||||||||||||o|||||||
3' TCGTACGGACCGAGGGGCATACGGACGTCTGG 5'

609

Glycine max

TTTGGATTGAAGGGAGCTC

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA15G08630.1 cdna:novel chromosome:V1.0:Gm15:6108906:6112083:-1 gene:GLYMA15G08630 transcript:GLYMA15G08630.1

2

1080

0.01

4

1.5

5'     TTTGGATTGAAGGGAGCTC          3'
       ||||| |||||||o|||||
3' TTTGAAACCAAACTTCCTTCGAGACCTAGACC 5'

611

Glycine max

TCGGACCAGGCTTCATTCCC

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA08G13110.1 cdna:novel chromosome:V1.0:Gm08:9562597:9569062:1 gene:GLYMA08G13110 transcript:GLYMA08G13110.1

2

1092

0

60

12

1.5

5'     TCGGACCAGGCTTCATTCCC         3'
       o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAAA 5'

613

Glycine max

TTGACAGAAGATAGAGAGCAC

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA07G07870.1 cdna:known chromosome:V1.0:Gm07:6522220:6529131:1 gene:GLYMA07G07870 transcript:GLYMA07G07870.1

0

335

0

60

3.5

5'     TTGACAGAAGATAGAGAGCAC        3'
        ||||||||||  o|||||||
3' CACCCACTGTCTTCTCGTTCTCGTGTCTCCTC 5'

615

Glycine max

TTCCACAGCTTTCTTGAAC

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA07G04290.1 cdna:novel chromosome:V1.0:Gm07:3149413:3151946:-1 gene:GLYMA07G04290 transcript:GLYMA07G04290.1

2

728

0

60

12

1

5'    TTCCACA-GCTTTCTTGAAC          3'
      ||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCCAAAGACG 5'

617

Glycine max

TTCCACAGCTTTCTTGAAC

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA15G19460.1 cdna:novel chromosome:V1.0:Gm15:16759912:16762499:-1 gene:GLYMA15G19460 transcript:GLYMA15G19460.1

0

450

0

60

1

5'    TTCCACA-GCTTTCTTGAAC          3'
      ||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCTAAGAAGG 5'

619

Glycine max

TTGACAGAAGATAGAGAGCAC

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA03G29901.1 cdna:novel chromosome:V1.0:Gm03:37904151:37914523:-1 gene:GLYMA03G29901 transcript:GLYMA03G29901.1

0

1149

0

30

15

1

5'     TTGACAGAAGATAGAGAGCAC        3'
       ||||||||||| |||||||||
3' ACTAAACTGTCTTCTCTCTCTCGTGTCGAGCT 5'

621

Glycine max

GCCTGGCTCCCTGTATGCC

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA02G12900.3 cdna:novel chromosome:V1.0:Gm02:11166630:11169455:1 gene:GLYMA02G12900 transcript:GLYMA02G12900.3

2

1435

0.03

30

6

2.5

5'     GCCTGGCTCCCTGTATGCC          3'
       o||||||| ||||| ||||
3' GACTTGGACCGATGGACA-ACGGAGTATACCT 5'

623

Glycine max

TAACAAGTGGGTTTGTTGACTG

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA05G30140.1 cdna:known chromosome:V1.0:Gm05:35569728:35575763:-1 gene:GLYMA05G30140 transcript:GLYMA05G30140.1

2

1489

0.02

30

3

5'     TAACAAGTGGGTTTGTTGACTG       3'
       o | |||||||||o||||||||
3' AACAGGT-TTCACCCAAGCAACTGACCAAGTA 5'

625

Glycine max

CAATCAGAACGTGACACGTGA

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA11G34970.1 cdna:novel chromosome:V1.0:Gm11:36719683:36722379:1 gene:GLYMA11G34970 transcript:GLYMA11G34970.1

2

1456

0.04

19

3.5

5'    CAATCAGA-ACGTGACACGTGA        3'
      |||o|||| ||||o| ||o|||
3' ATGGTTGGTCTGTGCATTTTGTACTTGAGTCT 5'

627

Glycine max

TGGAGAAGCAGGGCACGTGCA

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA17G10970.1 cdna:known chromosome:V1.0:Gm17:8247753:8249783:1 gene:GLYMA17G10970 transcript:GLYMA17G10970.1

2

918

0.02

23

4.6

2.5

5'     TGGAGAAGCAGGGCACGTGCA        3'
       ||||||||||||||||||o
3' CCTAACCTCTTCGTCCCGTGCATTCGGCATAG 5'

629

Glycine max

TGCGAGTGTCTTCGCCTCTG

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA03G14888.1 cdna:novel chromosome:V1.0:Gm03:19079982:19089860:-1 gene:GLYMA03G14888 transcript:GLYMA03G14888.1

2

144

0

19

2.5

5'     TGCGAGTGTCTTCGCCTCTG         3'
       oo|||||o||||| ||||||
3' CATCGTGCTCATAGAAGAGGAGACTTCGAGTA 5'

631

Glycine max

TCGCTTGGTGCAGGTCGGGAA

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA10G30650.1 cdna:novel chromosome:V1.0:Gm10:39265566:39269217:1 gene:GLYMA10G30650 transcript:GLYMA10G30650.1

2

137

0.04

30

3

5'     TCGCTTGGTGCAGGTCGGGAA        3'
       |||||o|| ||||o ||||||
3' AACTAGCGAGCCTCGTCTTGCCCTTTGTCTAC 5'

633

Glycine max

AAGCCAAGGATGACTTGCCGA

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA12G36540.2 cdna:novel chromosome:V1.0:Gm12:39579501:39585865:-1 gene:GLYMA12G36540 transcript:GLYMA12G36540.2

2

1163

0.05

30

4.28571

3.5

5'     AAGCCAAGGATGACTTGCCGA        3'
       ||||||||o|||| |||||
3' TTGATTCGGTTCTTACTTAACGGAAGATATGT 5'

635

Glycine max

TGCCTGGCTCCCTGTATGCC

alignment

plot

GSM848963_Cot25_unique_seq_count

GLYMA20G32040.1 cdna:novel chromosome:V1.0:Gm20:40662803:40666056:-1 gene:GLYMA20G32040 transcript:GLYMA20G32040.1

2

1600

0

17

0

5'     TGCCTGGCTCCCTGTATGCC         3'
       ||||||||||||||||||||
3' TCCTACGGACCGAGGGACATACGGAGGTCTTG 5'

637

Glycine max

TCATTTTGCGTGCAATGATCTG

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA09G02920.2 cdna:novel chromosome:V1.0:Gm09:2023553:2036875:-1 gene:GLYMA09G02920 transcript:GLYMA09G02920.2

2

3072

0

18

9

2

5'     TCATTTTGCGTGCAATGATCTG       3'
       |||||||| |||||||||||oo
3' TTAAAGTAAAACACACGTTACTAGGTTTACGT 5'

639

Glycine max

TTCCACAGCTTTCTTGAACTGT

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA02G02942.2 cdna:novel chromosome:V1.0:Gm02:2254118:2257679:1 gene:GLYMA02G02942 transcript:GLYMA02G02942.2

2

549

0.04

20

10

3

5'    TTCCACA-GCTTTCTTGAACTGT       3'
      o||| || ||||||o||||||||
3' AACGAGGCGTCCGAAAGGACTTGACAAAAGAG 5'

641

Glycine max

TTCCACAGCTTTCTTGAAC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA14G10090.1 cdna:novel chromosome:V1.0:Gm14:8190765:8195025:-1 gene:GLYMA14G10090 transcript:GLYMA14G10090.1

2

1104

0

40

13.3333

1

5'    TTCCACA-GCTTTCTTGAAC          3'
      ||||||| ||||||||||||
3' CGGAAGGTGTCCGAAAGAACTTGCTACCGCAG 5'

643

Glycine max

TCATCATCATCATCTTCTTCT

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA03G32020.3 cdna:novel chromosome:V1.0:Gm03:39830110:39837209:-1 gene:GLYMA03G32020 transcript:GLYMA03G32020.3

2

824

0

30

0

5'     TCATCATCATCATCTTCTTCT        3'
       |||||||||||||||||||||
3' AAGGAGTAGTAGTAGTAGAAGAAGAACGACAC 5'

645

Glycine max

ATTGAGCCGCGTCAATATC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA20G28090.2 cdna:novel chromosome:V1.0:Gm20:37034336:37042352:1 gene:GLYMA20G28090 transcript:GLYMA20G28090.2

1

761

0.05

20

5

3.5

5'     ATTGAGCCGCGTCAATATC          3'
       |||||o| |||| |||||
3' GGACTAACTTGACGCA-TTATAACTTATTCTA 5'

647

Glycine max

TTGGCATTCTGTCCACCTCC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA08G11030.4 cdna:novel chromosome:V1.0:Gm08:8058634:8062620:1 gene:GLYMA08G11030 transcript:GLYMA08G11030.4

2

1264

0

8

2.66667

1

5'     TTGGCATTCTGTCCACCTCC         3'
       ||||||||||||| ||||||
3' TGCAAACCGTAAGACAGTTGGAGGAAGGTGTT 5'

649

Glycine max

TCGGACCAGGCTTCATTCC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA12G08080.1 cdna:novel chromosome:V1.0:Gm12:5801673:5808673:1 gene:GLYMA12G08080 transcript:GLYMA12G08080.1

1

1424

0

40

20

1

5'     TCGGACCAGGCTTCATTCC          3'
       o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTCCGTAGAC 5'

651

Glycine max

TTCCACAGCTTTCTTGAAC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA03G35010.3 cdna:novel chromosome:V1.0:Gm03:42329293:42333139:1 gene:GLYMA03G35010 transcript:GLYMA03G35010.3

1

1191

0

20

5

1

5'    TTCCACA-GCTTTCTTGAAC          3'
      ||||||| ||||||||||||
3' ATCAAGGTGTCCGAAAGAACTTGCCAAAGAAG 5'

653

Glycine max

TTCCACAGCTTTCTTGAAC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA19G37740.1 cdna:novel chromosome:V1.0:Gm19:44838730:44842363:1 gene:GLYMA19G37740 transcript:GLYMA19G37740.1

1

943

0

20

5

1

5'    TTCCACA-GCTTTCTTGAAC          3'
      ||||||| ||||||||||||
3' ATCAAGGTGTCCGAAAGAACTTGCCAAAGAAG 5'

655

Glycine max

TTGACAGAAGATAGAGAGCAC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA11G36980.3 cdna:known chromosome:V1.0:Gm11:38244535:38250746:1 gene:GLYMA11G36980 transcript:GLYMA11G36980.3

2

3527

0

21

5.25

1

5'     TTGACAGAAGATAGAGAGCAC        3'
       ||||||||||| |||||||||
3' AAGCAACTGTCTTCTCTCTCTCGTGCCAATTG 5'

657

Glycine max

TTCCACAGCTTTCTTGAAC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA02G30885.1 cdna:novel chromosome:V1.0:Gm02:33329697:33330499:-1 gene:GLYMA02G30885 transcript:GLYMA02G30885.1

1

385

0.02

3

1.5

2.5

5'     TTCCACAGCTTTCTTGAAC          3'
       o|||||||||||||||  |
3' AACCGAGGTGTCGAAAGAACCAGACAAAGAAC 5'

659

Glycine max

TTGCCGATTCCACCCATTCCTA

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA13G37990.1 cdna:novel chromosome:V1.0:Gm13:38922846:38923913:1 gene:GLYMA13G37990 transcript:GLYMA13G37990.1

1

340

0

19

3.5

5'     TTGCCGATTCCACCCATTCCTA       3'
       |||||o||o||| ||||o|||
3' TGGGAACGGTTAGGGTCGGTAGGGAATTATTT 5'

661

Glycine max

TTCCACAGCTTTCTTGAAC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA13G16924.2 cdna:novel chromosome:V1.0:Gm13:20777152:20779829:-1 gene:GLYMA13G16924 transcript:GLYMA13G16924.2

0

769

0

40

8

1

5'    TTCCACA-GCTTTCTTGAAC          3'
      ||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCTAAAAAGG 5'

663

Glycine max

TTCCACAGCTTTCTTGAAC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA02G01370.5 cdna:novel chromosome:V1.0:Gm02:988758:995852:1 gene:GLYMA02G01370 transcript:GLYMA02G01370.5

0

1154

0

40

5.71429

2

5'     TTCCACAGCTTTCTTGAAC          3'
       |||||| |||||||||| |
3' CAAGAAGGTGACGAAAGAACTAGGGAAGTATC 5'

665

Glycine max

GGATATTGGTCCGGTTCAATA

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA06G09050.2 cdna:novel chromosome:V1.0:Gm06:6647326:6651348:1 gene:GLYMA06G09050 transcript:GLYMA06G09050.2

2

672

0.04

19

6.33333

3.5

5'     GGATATTGGTCC-GGTTCAATA       3'
       o||| ||||||| |||o|||o|
3' GTCTTCTAAAACCAGGTCCAGGTTGTCGTTCT 5'

667

Glycine max

TTTGGATTGAAGGGAGCTC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA06G47000.2 cdna:novel chromosome:V1.0:Gm06:49543622:49548924:-1 gene:GLYMA06G47000 transcript:GLYMA06G47000.2

2

1343

0

6

1.5

1

5'     TTTGGATTGAAGGGAGCTC          3'
       |||||| ||||||||||||
3' CCTTAAACCTCACTTCCCTCGAGACTGAAGTG 5'

669

Glycine max

TTCCACAGCTTTCTTGAAC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA16G00971.4 cdna:novel chromosome:V1.0:Gm16:636293:639481:-1 gene:GLYMA16G00971 transcript:GLYMA16G00971.4

0

955

0

40

8

1

5'    TTCCACA-GCTTTCTTGAAC          3'
      ||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCCAAAGACG 5'

671

Glycine max

TCGGACCAGGCTTCATTCCC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA05G30000.1 cdna:novel chromosome:V1.0:Gm05:35421769:35428492:1 gene:GLYMA05G30000 transcript:GLYMA05G30000.1

2

1080

0

40

8

1.5

5'     TCGGACCAGGCTTCATTCCC         3'
       o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5'

673

Glycine max

TCGGACCAGGCTTCATTCC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA09G02750.1 cdna:novel chromosome:V1.0:Gm09:1901637:1907522:-1 gene:GLYMA09G02750 transcript:GLYMA09G02750.1

2

968

0

40

8

1

5'     TCGGACCAGGCTTCATTCC          3'
       o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAGAC 5'

675

Glycine max

TTCCACAGCTTTCTTGAAC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA11G01060.1 cdna:novel chromosome:V1.0:Gm11:573836:577693:1 gene:GLYMA11G01060 transcript:GLYMA11G01060.1

2

486

0

40

8

1

5'    TTCCACA-GCTTTCTTGAAC          3'
      ||||||| ||||||||||||
3' ACTAAGGTGTCCGAAAGAACTTGCCAACGCCG 5'

677

Glycine max

TTGAGCCGTGCCAATATCA

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA03G03760.2 cdna:novel chromosome:V1.0:Gm03:3581308:3584468:-1 gene:GLYMA03G03760 transcript:GLYMA03G03760.2

1

1642

0

40

13.3333

1.5

5'     TTGAGCCGTGCCAATATCA          3'
       ||||||||o|||||||||
3' CACTAACTCGGCGCGGTTATAGGGAACGCGTA 5'

679

Glycine max

TGATTGAGCCGTGCCAATAT

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA03G03760.2 cdna:novel chromosome:V1.0:Gm03:3581308:3584468:-1 gene:GLYMA03G03760 transcript:GLYMA03G03760.2

1

1645

0

40

13.3333

0.5

5'     TGATTGAGCCGTGCCAATAT         3'
       |||||||||||o||||||||
3' GACCACTAACTCGGCGCGGTTATAGGGAACGC 5'

681

Glycine max

CAGCCAAGGATGACTTGCCG

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA02G12185.1 cdna:novel chromosome:V1.0:Gm02:10421144:10423720:1 gene:GLYMA02G12185 transcript:GLYMA02G12185.1

2

1116

0

5

1.25

1.5

5'     CAGCCAAGGATGACTTGCCG         3'
        ||||||o||||||||||||
3' GTACATCGGTTTCTACTGAACGGCTTAAATGG 5'

683

Glycine max

TCGGACCAGGCTTCATTCC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA15G13640.1 cdna:novel chromosome:V1.0:Gm15:10250637:10256541:-1 gene:GLYMA15G13640 transcript:GLYMA15G13640.1

2

945

0

40

4

1

5'     TCGGACCAGGCTTCATTCC          3'
       o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAGAC 5'

685

Glycine max

ATTGAGCCGCGTCAATATC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA01G33270.1 cdna:novel chromosome:V1.0:Gm01:45164207:45167759:-1 gene:GLYMA01G33270 transcript:GLYMA01G33270.1

2

1209

0

20

6.66667

0.5

5'     ATTGAGCCGCGTCAATATC          3'
       |||||||||||o|||||||
3' CCACTAACTCGGCGCGGTTATAGGGAACGCGT 5'

687

Glycine max

TCCAAAGGGATCGCATTGATC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA02G17170.2 cdna:novel chromosome:V1.0:Gm02:15488295:15491581:1 gene:GLYMA02G17170 transcript:GLYMA02G17170.2

2

1741

0

20

5

1

5'     TCCAAAGGGATCGCATTGATC        3'
       |||||||||||||||||| ||
3' CTGTAGGTTTCCCTAGCGTAAC-AGAGGTCGA 5'

689

Glycine max

TTGACAGAAGATAGAGAGCAC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA19G32800.1 cdna:novel chromosome:V1.0:Gm19:40502386:40507238:-1 gene:GLYMA19G32800 transcript:GLYMA19G32800.1

1

1139

0

40

20

1

5'     TTGACAGAAGATAGAGAGCAC        3'
       ||||||||||| |||||||||
3' ACTAAACTGTCTTCTCTCTCTCGTGTCGAGCA 5'

691

Glycine max

TGCCTGGCTCCCTGTATGCC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA12G29720.1 cdna:novel chromosome:V1.0:Gm12:33175269:33178907:-1 gene:GLYMA12G29720 transcript:GLYMA12G29720.1

0

1654

0

40

0

5'     TGCCTGGCTCCCTGTATGCC         3'
       ||||||||||||||||||||
3' TCGTACGGACCGAGGGACATACGGACGTCCTC 5'

693

Glycine max

TGCCTGGCTCCCTGTATGCC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA14G33730.1 cdna:novel chromosome:V1.0:Gm14:41889885:41894154:1 gene:GLYMA14G33730 transcript:GLYMA14G33730.1

1

1184

0

40

20

0.5

5'     TGCCTGGCTCCCTGTATGCC         3'
       ||||||||||||||o|||||
3' TAGTACGGACCGAGGGACGTACGGTCGTCCTT 5'

695

Glycine max

TGATTGAGCCGTGCCAATAT

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA01G18040.1 cdna:novel chromosome:V1.0:Gm01:22484145:22487576:-1 gene:GLYMA01G18040 transcript:GLYMA01G18040.1

1

1771

0

40

20

0.5

5'     TGATTGAGCCGTGCCAATAT         3'
       |||||||||||o||||||||
3' AACCACTAACTCGGCGCGGTTATAGGGTACGC 5'

697

Glycine max

TTCCACAGCTTTCTTGAAC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA01G35145.1 cdna:novel chromosome:V1.0:Gm01:47696214:47700220:1 gene:GLYMA01G35145 transcript:GLYMA01G35145.1

0

556

0

40

20

1

5'    TTCCACA-GCTTTCTTGAAC          3'
      ||||||| ||||||||||||
3' ACTAAGGTGTCCGAAAGAACTTGCCATTGCGG 5'

699

Glycine max

TGCCTGGCTCCCTGTATGCC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA04G43350.1 cdna:novel chromosome:V1.0:Gm04:48947065:48951466:1 gene:GLYMA04G43350 transcript:GLYMA04G43350.1

0

1540

0

34

0.5

5'     TGCCTGGCTCCCTGTATGCC         3'
       ||||||||||||||o|||||
3' TAGTACGGACCGAGGGACGTACGGTCGTCCTT 5'

701

Glycine max

TGCCTGGCTCCCTGTATGCC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA13G20382.2 cdna:novel chromosome:V1.0:Gm13:23822784:23826849:-1 gene:GLYMA13G20382 transcript:GLYMA13G20382.2

2

1754

0

20

5

0.5

5'     TGCCTGGCTCCCTGTATGCC         3'
       ||||||||||||||o|||||
3' TCGTACGGACCGAGGGACGTACGGTCGTCCTC 5'

703

Glycine max

TCATCATCATCATCATCTTGC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA13G42580.1 cdna:novel chromosome:V1.0:Gm13:42527796:42529226:-1 gene:GLYMA13G42580 transcript:GLYMA13G42580.1

1

1007

0.04

11

1.375

2.5

5'     TCATCATCATCATCATCTTGC        3'
       ||||||o|||||||||| | |
3' TAGTAGTAGTGGTAGTAGTAGTA-GAAGTACG 5'

705

Glycine max

TTGCCGATTCCACCCATTCCTA

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA08G12860.1 cdna:novel chromosome:V1.0:Gm08:9404952:9417893:1 gene:GLYMA08G12860 transcript:GLYMA08G12860.1

1

1964

0.01

20

10

4

5'     TTGCCGATTCCACCCATTCCTA       3'
        |||||||||||| | |||||
3' AATACACGGCTAAGGTGCGGAAGGAATGTAGT 5'

707

Glycine max

TGGAGAAGCAGGGCACGTGCA

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA05G00930.1 cdna:novel chromosome:V1.0:Gm05:542676:544662:-1 gene:GLYMA05G00930 transcript:GLYMA05G00930.1

2

883

0.01

37

7.4

2.5

5'     TGGAGAAGCAGGGCACGTGCA        3'
       ||||||||||||||||||o
3' CCTAACCTCTTCGTCCCGTGCATTCGGCTTAG 5'

709

Glycine max

TGGAGAAGCAGGGCACGTGCA

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA08G18470.1 cdna:known chromosome:V1.0:Gm08:13867947:13872796:1 gene:GLYMA08G18470 transcript:GLYMA08G18470.1

0

730

0

12

6

2

5'     TGGAGAAGCAGGGCACGTGCA        3'
       |||||||||||||||| |||
3' TTTTACCTCTTCGTCCCGTGAACGAGTTTGAG 5'

711

Glycine max

TTGACAGAAGATAGAGAGCAC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA18G00903.1 cdna:novel chromosome:V1.0:Gm18:426939:431809:1 gene:GLYMA18G00903 transcript:GLYMA18G00903.1

0

2437

0

40

1

5'     TTGACAGAAGATAGAGAGCAC        3'
       ||||||||||| |||||||||
3' AAGCAACTGTCTTCTCTCTCTCGTGCCAATTG 5'

713

Glycine max

TTTGGATTGAAGGGAGCTC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA13G25716.2 cdna:novel chromosome:V1.0:Gm13:28929349:28934215:1 gene:GLYMA13G25716 transcript:GLYMA13G25716.2

2

1830

0.03

11

2.2

2

5'     TTTGGATTGAAGGGAGCTC          3'
        ||||| ||||||||||||
3' CCTATAACCTCACTTCCCTCGAGGTTGAAGTA 5'

715

Glycine max

TGGAGAAGCAGGGCACGTGCA

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA06G21020.1 cdna:known chromosome:V1.0:Gm06:17431771:17433898:1 gene:GLYMA06G21020 transcript:GLYMA06G21020.1

2

1106

0

37

7.4

2.5

5'     TGGAGAAGCAGGGCACGTGCA        3'
       ||||||||||||||||||o
3' CCTAACCTCTTCGTCCCGTGCATTCGTCTTAG 5'

717

Glycine max

CAATCAGAACGTGACACGTGA

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA06G02900.1 cdna:novel chromosome:V1.0:Gm06:2007259:2009448:-1 gene:GLYMA06G02900 transcript:GLYMA06G02900.1

2

1491

0.02

20

3

5'     CAATCAGAACGTGACACGTGA        3'
       |||o|||||||o||| ||| |
3' GGTCGTTGGTCTTGCGCTG-GCAGTGCTTCGT 5'

719

Glycine max

TTGACAGAAGATAGAGAGCAC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA17G08840.2 cdna:novel chromosome:V1.0:Gm17:6526544:6532020:-1 gene:GLYMA17G08840 transcript:GLYMA17G08840.2

2

1901

0

40

10

2

5'     TTGACAGAAGATAGAGAGCAC        3'
        |||||||||| |||||||||
3' ACTCTACTGTCTTCTCTCTCTCGTGTTGTTCT 5'

721

Glycine max

TTCCACAGCTTTCTTGAAC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA04G40880.2 cdna:novel chromosome:V1.0:Gm04:46789378:46792963:-1 gene:GLYMA04G40880 transcript:GLYMA04G40880.2

0

1113

0

40

8

1

5'    TTCCACA-GCTTTCTTGAAC          3'
      ||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCCCCTGCCG 5'

723

Glycine max

TGCCTGGCTCCCTGTATGCC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA13G02410.1 cdna:novel chromosome:V1.0:Gm13:2276691:2281351:-1 gene:GLYMA13G02410 transcript:GLYMA13G02410.1

0

1530

0

40

0.5

5'     TGCCTGGCTCCCTGTATGCC         3'
       ||||||||||||||o|||||
3' TAGTACGGACCGAGGGACGTACGGTCGTCCTT 5'

725

Glycine max

TCAAAGGGAGTTGTAGGGGAA

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA14G24860.1 cdna:known chromosome:V1.0:Gm14:29966155:29973516:1 gene:GLYMA14G24860 transcript:GLYMA14G24860.1

1

118

0.01

40

3.5

5'     TCAAAGGGAGTTGTAGGGGAA        3'
        |||||||||||| ||o|||
3' ATGCCGTTTCCCTCAACTTCTCCTAGGAGTTT 5'

727

Glycine max

CGATTACCAGAAGGCTTATTAG

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA14G35070.1 cdna:novel chromosome:V1.0:Gm14:43792798:43799059:-1 gene:GLYMA14G35070 transcript:GLYMA14G35070.1

2

1579

0.04

20

10

4

5'     CGATTACCAGAAGGCTTATTAG       3'
        ||o| ||||||||||o|| ||
3' TTGAACTGACGGTCTTCCGAGTA-TCAAACGT 5'

729

Glycine max

TCGGACCAGGCTTCATTCCC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA06G09100.1 cdna:novel chromosome:V1.0:Gm06:6696969:6703161:1 gene:GLYMA06G09100 transcript:GLYMA06G09100.1

2

957

0.01

40

4

1.5

5'     TCGGACCAGGCTTCATTCCC         3'
       o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAAA 5'

731

Glycine max

TTGACAGAAGATAGAGAGCAC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA02G30670.2 cdna:novel chromosome:V1.0:Gm02:32711340:32716829:-1 gene:GLYMA02G30670 transcript:GLYMA02G30670.2

0

962

0

40

1

5'     TTGACAGAAGATAGAGAGCAC        3'
       ||||||||||| |||||||||
3' ACTGAACTGTCTTCTCTCTCTCGTGTCAAACT 5'

733

Glycine max

TGAAGCTGCCAGCATGATCTT

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA15G09750.3 cdna:novel chromosome:V1.0:Gm15:6969486:6976414:-1 gene:GLYMA15G09750 transcript:GLYMA15G09750.3

1

3236

0.03

40

10

3.5

5'     TGAAGCTGCCAGCATGATCTT        3'
         ||||||||||| ||||||o
3' TTTATGTTCGACGGTCGGACTAGAGTGTCCCA 5'

735

Glycine max

TGACAGAAGAGAGTGAGCAC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA02G30670.2 cdna:novel chromosome:V1.0:Gm02:32711340:32716829:-1 gene:GLYMA02G30670 transcript:GLYMA02G30670.2

2

961

0

20

1

5'     TGACAGAAGAGAGTGAGCAC         3'
       ||||||||||||| ||||||
3' CTGAACTGTCTTCTCTCTCTCGTGTCAAACTC 5'

737

Glycine max

TGGAGAAGCAGGGCACGTGCA

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA12G26190.1 cdna:novel chromosome:V1.0:Gm12:29514536:29517365:1 gene:GLYMA12G26190 transcript:GLYMA12G26190.1

2

879

0

20

2

5'     TGGAGAAGCAGGGCACGTGCA        3'
       |||||||o||||o|||||||
3' TACCACCTCTTTGTCCTGTGCACGAGGGAAAC 5'

739

Glycine max

TTAATCAAGGAAATCACGGTCG

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA08G08430.1 cdna:known chromosome:V1.0:Gm08:6040931:6043635:1 gene:GLYMA08G08430 transcript:GLYMA08G08430.1

2

325

0.01

20

3.5

5'     TTAATCAAGGAAATCACGGTCG       3'
        o||||||||| |||| |||||
3' ACGTCGTTAGTTCCTGTAGTCCCAGCCTTTGC 5'

741

Glycine max

TGCCTGGCTCCCTGTATGCC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA13G40030.1 cdna:novel chromosome:V1.0:Gm13:40591013:40594198:1 gene:GLYMA13G40030 transcript:GLYMA13G40030.1

1

1779

0

40

0

5'     TGCCTGGCTCCCTGTATGCC         3'
       ||||||||||||||||||||
3' TCTTACGGACCGAGGGACATACGGACGTCCTC 5'

743

Glycine max

TTGACAGAAGATAGAGAGCAC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA11G02260.1 cdna:novel chromosome:V1.0:Gm11:1409681:1414565:1 gene:GLYMA11G02260 transcript:GLYMA11G02260.1

1

868

0.03

20

3.5

5'     TTGACAGAAGATAGAGAGCAC        3'
       |||| ||||||o||||||  |
3' CCCGAACT-TCTTCTGTCTCTCTGGCTTCAGG 5'

745

Glycine max

TGCCTGGCTCCCTGTATGCC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA19G36571.1 cdna:novel chromosome:V1.0:Gm19:43842474:43846765:-1 gene:GLYMA19G36571 transcript:GLYMA19G36571.1

1

2324

0

20

0

5'     TGCCTGGCTCCCTGTATGCC         3'
       ||||||||||||||||||||
3' TCGTACGGACCGAGGGACATACGGTCGTCCTC 5'

747

Glycine max

TGTGTTCTCAGGTCGCCCCT

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA03G40280.2 cdna:novel chromosome:V1.0:Gm03:46076955:46080391:1 gene:GLYMA03G40280 transcript:GLYMA03G40280.2

2

156

0.03

5

2.5

5'     TGTGTTCTCAGGTCGCCCCT         3'
       |||| ||||||| |o|||||
3' AGTTACACTAGAGTCCCGTGGGGAATCTGTCT 5'

749

Glycine max

TTCCACAGCTTTCTTGAAC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA09G17255.1 cdna:novel chromosome:V1.0:Gm09:21116187:21116784:1 gene:GLYMA09G17255 transcript:GLYMA09G17255.1

1

284

0.04

3

1.5

2.5

5'     TTCCACAGCTTTCTTGAAC          3'
       o|||||||||||||||  |
3' AACCGAGGTGTCGAAAGAACCAGACAAAGAAC 5'

751

Glycine max

TTCCACAGCTTTCTTGAAC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA10G07790.2 cdna:novel chromosome:V1.0:Gm10:6583388:6586706:1 gene:GLYMA10G07790 transcript:GLYMA10G07790.2

0

646

0

32

1

5'    TTCCACA-GCTTTCTTGAAC          3'
      ||||||| ||||||||||||
3' AACAAGGTGTCCGAAAGAACTTGCCAAGGCCG 5'

753

Glycine max

TTCCACAGCTTTCTTGAAC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA08G04800.1 cdna:known chromosome:V1.0:Gm08:3411980:3414173:-1 gene:GLYMA08G04800 transcript:GLYMA08G04800.1

1

692

0.05

20

10

3

5'     TTCCACAGCTTTCTTGAAC          3'
       ||| |||||| |||||||
3' TACCAAGTTGTCGACAGAACTTCTCTTCCTGT 5'

755

Glycine max

TGGAGAAGCAGGGCACGTGCA

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA13G34950.1 cdna:novel chromosome:V1.0:Gm13:36439653:36442281:1 gene:GLYMA13G34950 transcript:GLYMA13G34950.1

2

1066

0

7

3.5

2

5'     TGGAGAAGCAGGGCACGTGCA        3'
       |||||||o||||o|||||||
3' TAACACCTCTTTGTCCTGTGCACGAGGAAAAA 5'

757

Glycine max

TTCCACAGCTTTCTTGAAC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA03G22874.1 cdna:novel chromosome:V1.0:Gm03:29537652:29541762:1 gene:GLYMA03G22874 transcript:GLYMA03G22874.1

0

492

0.01

40

5.71429

2

5'     TTCCACAGCTTTCTTGAAC          3'
       |||||| |||||||||| |
3' CAAGAAGGTGACGAAAGAACTAGGTGAATTAT 5'

759

Glycine max

TCGGACCAGGCTTCATTCCC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA08G13110.1 cdna:novel chromosome:V1.0:Gm08:9562597:9569062:1 gene:GLYMA08G13110 transcript:GLYMA08G13110.1

2

1092

0

40

8

1.5

5'     TCGGACCAGGCTTCATTCCC         3'
       o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAAA 5'

761

Glycine max

CAGTGCATGACTATATCGCCAG

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA19G28780.1 cdna:novel chromosome:V1.0:Gm19:36366963:36371834:-1 gene:GLYMA19G28780 transcript:GLYMA19G28780.1

0

555

0

18

9

3.5

5'     CAGTGCATGACTATATCGCCAG       3'
       ||||||| |||o|| | |||||
3' CGAGGTCACGT-CTGGTAGAACGGTCTACGTT 5'

763

Glycine max

TTCCACAGCTTTCTTGAAC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA07G04290.1 cdna:novel chromosome:V1.0:Gm07:3149413:3151946:-1 gene:GLYMA07G04290 transcript:GLYMA07G04290.1

2

728

0

40

8

1

5'    TTCCACA-GCTTTCTTGAAC          3'
      ||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCCAAAGACG 5'

765

Glycine max

CAGCCAAGGATGACTTGCCG

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA14G01360.1 cdna:novel chromosome:V1.0:Gm14:766608:770587:1 gene:GLYMA14G01360 transcript:GLYMA14G01360.1

2

1555

0

11

5.5

1.5

5'     CAGCCAAGGATGACTTGCCG         3'
       ||||||||o|||| ||||||
3' TTGTGTCGGTTCTTACTAAACGGCGAACTGTA 5'

767

Glycine max

TGGAGAAGCAGGGCACGTGCA

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA15G40510.1 cdna:known chromosome:V1.0:Gm15:47503232:47508060:-1 gene:GLYMA15G40510 transcript:GLYMA15G40510.1

1

734

0

12

6

2

5'     TGGAGAAGCAGGGCACGTGCA        3'
       |||||||||||||||| |||
3' TTTTACCTCTTCGTCCCGTGAACGAGTTTGAG 5'

769

Glycine max

AAGCCAAGGATGACTTGCCGA

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA03G36140.6 cdna:known chromosome:V1.0:Gm03:43160314:43165126:-1 gene:GLYMA03G36140 transcript:GLYMA03G36140.6

2

1420

0.04

2

0.666667

3

5'     AAGCCAAGGATGACTTGCCGA        3'
       ||||||||||||| |||||
3' GTAGTTCGGTTCCTACTCAACGGAAGTCAATG 5'

771

Glycine max

TTCCACAGCTTTCTTGAAC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA15G19460.1 cdna:novel chromosome:V1.0:Gm15:16759912:16762499:-1 gene:GLYMA15G19460 transcript:GLYMA15G19460.1

0

450

0

28

1

5'    TTCCACA-GCTTTCTTGAAC          3'
      ||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCTAAGAAGG 5'

773

Glycine max

TTGGACTGAAGGGAGCTCCT

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA13G29160.1 cdna:novel chromosome:V1.0:Gm13:32078442:32088927:-1 gene:GLYMA13G29160 transcript:GLYMA13G29160.1

2

2296

0.03

14

7

2.5

5'     TTGGACTGAAGGGAGCTCCT         3'
       |||||||||||||  |o|||
3' TCTTAACCTGACTTCCCAGGGGGATAACAACA 5'

775

Glycine max

CAGAGGAAGCAGCACTTGTACC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA11G09980.1 cdna:known chromosome:V1.0:Gm11:7137966:7142199:1 gene:GLYMA11G09980 transcript:GLYMA11G09980.1

1

30

0.02

20

4

5'     CAGAGGAAGCAGCACTTG-TACC      3'
       |||||| ||||| ||| | ||||
3' CAGCGTCTCCCTCGTCATGATCGATGGAGAAG 5'

777

Glycine max

TAACAAGTGGGTTTGTTGACTG

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA05G30140.1 cdna:known chromosome:V1.0:Gm05:35569728:35575763:-1 gene:GLYMA05G30140 transcript:GLYMA05G30140.1

2

1489

0.02

20

3

5'     TAACAAGTGGGTTTGTTGACTG       3'
       o | |||||||||o||||||||
3' AACAGGT-TTCACCCAAGCAACTGACCAAGTA 5'

779

Glycine max

TGAAGCTGCCAGCATGATCTA

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA18G05330.1 cdna:novel chromosome:V1.0:Gm18:4066963:4074557:1 gene:GLYMA18G05330 transcript:GLYMA18G05330.1

2

2926

0.05

20

3

5'     TGAAGCTGCCAGCATGATCTA        3'
         ||||||||||| |||||||
3' CTTGTGTTCGACGGTCGGACTAGATTCTCCCA 5'

781

Glycine max

TTGACAGAAGATAGAGAGCAC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA19G02020.1 cdna:novel chromosome:V1.0:Gm19:1729371:1736065:-1 gene:GLYMA19G02020 transcript:GLYMA19G02020.1

1

1019

0

20

2.5

5'     TTGACAGAAGATAGAGAGCAC        3'
       |||| ||||| ||||o|||||
3' TTCGAACTATCTTCCATCTTTCGTGTGTGGAA 5'

783

Glycine max

TCTCATTCCATACATCGTCTG

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA04G29220.3 cdna:novel chromosome:V1.0:Gm04:33301245:33307654:-1 gene:GLYMA04G29220 transcript:GLYMA04G29220.3

2

1108

0

4

1.33333

2.5

5'     TCTCATTCCATACATCGTCTG        3'
       o|||||||||o|||||o||oo
3' GCTAGGAGTAAGGTGTGTAGTAGGTCGTGTTC 5'

785

Glycine max

TGGAGAAGCAGGGCACGTGCA

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA17G10970.1 cdna:known chromosome:V1.0:Gm17:8247753:8249783:1 gene:GLYMA17G10970 transcript:GLYMA17G10970.1

2

918

0.01

37

7.4

2.5

5'     TGGAGAAGCAGGGCACGTGCA        3'
       ||||||||||||||||||o
3' CCTAACCTCTTCGTCCCGTGCATTCGGCATAG 5'

787

Glycine max

TGAAGCTGCCAGCATGATCTT

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA01G43960.4 cdna:novel chromosome:V1.0:Gm01:54800646:54805855:-1 gene:GLYMA01G43960 transcript:GLYMA01G43960.4

2

2819

0.05

20

4

3

5'     TGAAGCTGCCAGCATGATCTT        3'
       |o|||||o|||||| || |||
3' CGGTATTTCGATGGTCGTTCTCGAAAGTCTAG 5'

789

Glycine max

TCGGACCAGGCTTCATTCC

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA05G21726.1 cdna:novel chromosome:V1.0:Gm05:26595908:26602630:1 gene:GLYMA05G21726 transcript:GLYMA05G21726.1

2

193

0

40

4

0.5

5'     TCGGACCAGGCTTCATTCC          3'
       o||||||||||||||||||
3' CTTAGGCCTGGTCCGAAGTAAGGTACGTAAAC 5'

791

Glycine max

ATATAGCATCGTGAGCAATCA

alignment

plot

GSM848964_SC25_unique_seq_count

GLYMA13G23520.3 cdna:novel chromosome:V1.0:Gm13:26916462:26919844:-1 gene:GLYMA13G23520 transcript:GLYMA13G23520.3

1

298

0.01

20

6.66667

4

5'     ATATAGCATCGTGAGCAATCA        3'
       |||o||||||  o|o|||o||
3' AAAGTATGTCGTAGGTTTTGTTGGTGGGTATG 5'

793

Glycine max

TGACAGAAGAGAGTGAGCAC

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA02G43950.1 cdna:novel chromosome:V1.0:Gm02:48631576:48640556:1 gene:GLYMA02G43950 transcript:GLYMA02G43950.1

0

719

0.04

18

4

5'     TGACAGAAGAGAGTGAGCAC         3'
       |o||||||||||||o|  |
3' CGTTATTGTCTTCTCTCATTATTTCTGACAAA 5'

795

Glycine max

TCGGACCAGGCTTCATTCC

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA11G20520.1 cdna:novel chromosome:V1.0:Gm11:17333852:17340583:-1 gene:GLYMA11G20520 transcript:GLYMA11G20520.1

0

1302

0

348

174

1

5'     TCGGACCAGGCTTCATTCC          3'
       o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTCCGTAGAC 5'

797

Glycine max

TTCCACAGCTTTCTTGAAC

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA01G34650.3 cdna:novel chromosome:V1.0:Gm01:47082620:47085604:1 gene:GLYMA01G34650 transcript:GLYMA01G34650.3

0

397

0

61

20.3333

1

5'    TTCCACA-GCTTTCTTGAAC          3'
      ||||||| ||||||||||||
3' ACAAAGGTGTCCGAAAGAACTTGCTAAAGCTG 5'

799

Glycine max

TTGACAGAAGATAGAGAGCAC

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA02G13371.1 cdna:novel chromosome:V1.0:Gm02:11670695:11677275:-1 gene:GLYMA02G13371 transcript:GLYMA02G13371.1

0

1261

0

55

11

1.5

5'     TTGACAGAAGATAGAGAGCAC        3'
       o|||||||||| |||||||||
3' ACTAGACTGTCTTCTCTCTCTCGTGTCGAACT 5'

801

Glycine max

TGACAGAAGAGAGTGAGCAC

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA02G13371.1 cdna:novel chromosome:V1.0:Gm02:11670695:11677275:-1 gene:GLYMA02G13371 transcript:GLYMA02G13371.1

2

1260

0

7

1.4

1

5'     TGACAGAAGAGAGTGAGCAC         3'
       ||||||||||||| ||||||
3' CTAGACTGTCTTCTCTCTCTCGTGTCGAACTA 5'

803

Glycine max

TGAAGCTGCCAGCATGATCT

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA05G27580.1 cdna:novel chromosome:V1.0:Gm05:33489312:33494876:-1 gene:GLYMA05G27580 transcript:GLYMA05G27580.1

2

2318

0.03

160

32

3

5'     TGAAGCTGCCAGCATGATCT         3'
         ||||||||||| ||||||
3' CTTATGTTCGACGGTCGGACTAGAGTGTCCCA 5'

805

Glycine max

TTCCACAGCTTTCTTGAAC

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA14G10090.1 cdna:novel chromosome:V1.0:Gm14:8190765:8195025:-1 gene:GLYMA14G10090 transcript:GLYMA14G10090.1

2

1104

0

51

17

1

5'    TTCCACA-GCTTTCTTGAAC          3'
      ||||||| ||||||||||||
3' CGGAAGGTGTCCGAAAGAACTTGCTACCGCAG 5'

807

Glycine max

TGACAGAAGAGAGTGAGCAC

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA02G30670.2 cdna:novel chromosome:V1.0:Gm02:32711340:32716829:-1 gene:GLYMA02G30670 transcript:GLYMA02G30670.2

2

961

0

9

1

5'     TGACAGAAGAGAGTGAGCAC         3'
       ||||||||||||| ||||||
3' CTGAACTGTCTTCTCTCTCTCGTGTCAAACTC 5'

809

Glycine max

TCCAAAGGGATCGCATTGATC

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA19G39420.1 cdna:novel chromosome:V1.0:Gm19:46102119:46105994:1 gene:GLYMA19G39420 transcript:GLYMA19G39420.1

2

1788

0

10

5

1

5'     TCCAAAGGGATCGCATTGATC        3'
       |||||||||||||||||| ||
3' CTGTAGGTTTCCCTAGCGTAAC-AGAGGTCGA 5'

811

Glycine max

TCATCATCATCATCTTCTTCT

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA03G32020.3 cdna:novel chromosome:V1.0:Gm03:39830110:39837209:-1 gene:GLYMA03G32020 transcript:GLYMA03G32020.3

2

827

0.04

264

2

5'     TCATCATCATCATCTTCTTCT        3'
       || ||||||||||| ||||||
3' GAGAAGGAGTAGTAGTAGTAGAAGAAGAACGA 5'

813

Glycine max

CTTTGTATTCTTCCACAGCTT

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA19G29180.3 cdna:novel chromosome:V1.0:Gm19:36747960:36752977:-1 gene:GLYMA19G29180 transcript:GLYMA19G29180.3

2

526

0.02

29

5.8

3

5'     CTTTGTATTCTTCCACAGCTT        3'
       |o|||||||| || |||||o|
3' CGGAGGAACATAAGTAGTTGTCGGAACACTCT 5'

815

Glycine max

TTCCACAGCTTTCTTGAAC

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA04G40880.4 cdna:novel chromosome:V1.0:Gm04:46789378:46792991:-1 gene:GLYMA04G40880 transcript:GLYMA04G40880.4

2

1141

0

93

18.6

1

5'    TTCCACA-GCTTTCTTGAAC          3'
      ||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCCCCTGCCG 5'

817

Glycine max

TGACAGAAGAGAGTGAGCAC

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA0005S50.1 cdna:novel chromosome:V1.0:Gm05:16185:21667:1 gene:GLYMA0005S50 transcript:GLYMA0005S50.1

2

1911

0

5

1.25

1

5'     TGACAGAAGAGAGTGAGCAC         3'
       ||||||||||||| ||||||
3' CTCTACTGTCTTCTCTCTCTCGTGTTGTTCTC 5'

819

Glycine max

TTGACAGAAGATAGAGAGCAC

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA11G36980.3 cdna:known chromosome:V1.0:Gm11:38244535:38250746:1 gene:GLYMA11G36980 transcript:GLYMA11G36980.3

0

3527

0

45

11.25

1

5'     TTGACAGAAGATAGAGAGCAC        3'
       ||||||||||| |||||||||
3' AAGCAACTGTCTTCTCTCTCTCGTGCCAATTG 5'

821

Glycine max

TTCCACAGCTTTCTTGAAC

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA13G16924.1 cdna:novel chromosome:V1.0:Gm13:20777152:20779829:-1 gene:GLYMA13G16924 transcript:GLYMA13G16924.1

0

769

0

120

24

1

5'    TTCCACA-GCTTTCTTGAAC          3'
      ||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCTAAAAAGG 5'

823

Glycine max

TTCCACAGCTTTCTTGAAC

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA17G05800.1 cdna:novel chromosome:V1.0:Gm17:4086935:4089150:1 gene:GLYMA17G05800 transcript:GLYMA17G05800.1

0

422

0

120

24

1

5'    TTCCACA-GCTTTCTTGAAC          3'
      ||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCCAAAAAGG 5'

825

Glycine max

TGTGTTCTCAGGTCGCCCCT

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA03G40280.2 cdna:novel chromosome:V1.0:Gm03:46076955:46080391:1 gene:GLYMA03G40280 transcript:GLYMA03G40280.2

2

156

0.01

5

2.5

5'     TGTGTTCTCAGGTCGCCCCT         3'
       |||| ||||||| |o|||||
3' AGTTACACTAGAGTCCCGTGGGGAATCTGTCT 5'

827

Glycine max

TGCCTGGCTCCCTGTATGCC

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA09G28360.2 cdna:novel chromosome:V1.0:Gm09:35348339:35353261:1 gene:GLYMA09G28360 transcript:GLYMA09G28360.2

1

2521

0

1003

250.75

0.5

5'     TGCCTGGCTCCCTGTATGCC         3'
       ||||||||||||o|||||||
3' TCGTACGGACCGAGGGGCATACGGACGTCTGG 5'

829

Glycine max

TTGAGCCGTGCCAATATCA

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA03G03760.1 cdna:novel chromosome:V1.0:Gm03:3581308:3584468:-1 gene:GLYMA03G03760 transcript:GLYMA03G03760.1

0

1729

0

399

133

1.5

5'     TTGAGCCGTGCCAATATCA          3'
       ||||||||o|||||||||
3' CACTAACTCGGCGCGGTTATAGGGAACGCGTA 5'

831

Glycine max

GGAATCTTGATGATGCTGCAG

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA11G00920.2 cdna:novel chromosome:V1.0:Gm11:478506:483371:-1 gene:GLYMA11G00920 transcript:GLYMA11G00920.2

2

2132

0.04

2

3.5

5'     GGAATCTTGATGATGCTGCAG        3'
       o|||||| |||||| || |||
3' ATCGTCTTAGACCTACTAAGA-GTCATAAGAC 5'

833

Glycine max

TTTGGATTGAAGGGAGCTC

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA04G15150.3 cdna:novel chromosome:V1.0:Gm04:15669460:15674719:1 gene:GLYMA04G15150 transcript:GLYMA04G15150.3

0

1355

0

5

1.25

1

5'     TTTGGATTGAAGGGAGCTC          3'
       |||||| ||||||||||||
3' CCTTAAACCTCACTTCCCTCGAGACTGAAACG 5'

835

Glycine max

TGCCTGGCTCCCTGTATGCC

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA10G35481.1 cdna:novel chromosome:V1.0:Gm10:43704337:43707929:1 gene:GLYMA10G35481 transcript:GLYMA10G35481.1

0

1609

0

1003

250.75

0

5'     TGCCTGGCTCCCTGTATGCC         3'
       ||||||||||||||||||||
3' TCGTACGGACCGAGGGACATACGGAGGTCTTG 5'

837

Glycine max

TCGGACCAGGCTTCATTCCC

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA05G30000.1 cdna:novel chromosome:V1.0:Gm05:35421769:35428492:1 gene:GLYMA05G30000 transcript:GLYMA05G30000.1

2

1080

0

42

8.4

1.5

5'     TCGGACCAGGCTTCATTCCC         3'
       o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5'

839

Glycine max

TGAAGCTGCCAGCATGATCTT

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA08G10550.2 cdna:novel chromosome:V1.0:Gm08:7667326:7674265:-1 gene:GLYMA08G10550 transcript:GLYMA08G10550.2

0

3570

0.02

160

32

3.5

5'     TGAAGCTGCCAGCATGATCTT        3'
         ||||||||||| ||||||o
3' CTTATGTTCGACGGTCGGACTAGAGTGTCCCA 5'

841

Glycine max

TCGGACCAGGCTTCATTCC

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA08G13110.1 cdna:novel chromosome:V1.0:Gm08:9562597:9569062:1 gene:GLYMA08G13110 transcript:GLYMA08G13110.1

2

1092

0

42

8.4

1

5'     TCGGACCAGGCTTCATTCC          3'
       o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAAAC 5'

843

Glycine max

TTATTGTAACTAATTTGTCGGT

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA04G03330.2 cdna:novel chromosome:V1.0:Gm04:2446812:2449903:-1 gene:GLYMA04G03330 transcript:GLYMA04G03330.2

2

226

0.03

19

4.75

4

5'     TTATTGTAACTAATTTGTCGGT       3'
       ||||o||||| |||||o ||oo
3' AAGAAATAGCATTGTTTAAATCGCTGATTCGG 5'

845

Glycine max

TCGGACCAGGCTTCATTCC

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA09G02750.1 cdna:novel chromosome:V1.0:Gm09:1901637:1907522:-1 gene:GLYMA09G02750 transcript:GLYMA09G02750.1

2

968

0

42

8.4

1

5'     TCGGACCAGGCTTCATTCC          3'
       o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAGAC 5'

847

Glycine max

TTCCACAGCTTTCTTGAAC

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA07G04290.1 cdna:novel chromosome:V1.0:Gm07:3149413:3151946:-1 gene:GLYMA07G04290 transcript:GLYMA07G04290.1

2

728

0

74

14.8

1

5'    TTCCACA-GCTTTCTTGAAC          3'
      ||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCCAAAGACG 5'

849

Glycine max

TCGGACCAGGCTTCATTCC

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA15G13640.1 cdna:novel chromosome:V1.0:Gm15:10250637:10256541:-1 gene:GLYMA15G13640 transcript:GLYMA15G13640.1

0

945

0

152

15.2

1

5'     TCGGACCAGGCTTCATTCC          3'
       o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTTAGTAGAC 5'

851

Glycine max

CAGCCAAGGATGACTTGCCG

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA14G01360.1 cdna:novel chromosome:V1.0:Gm14:766608:770587:1 gene:GLYMA14G01360 transcript:GLYMA14G01360.1

2

1555

0

11

5.5

1.5

5'     CAGCCAAGGATGACTTGCCG         3'
       ||||||||o|||| ||||||
3' TTGTGTCGGTTCTTACTAAACGGCGAACTGTA 5'

853

Glycine max

AGGTGGGCATACTGTCAACT

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA14G25810.2 cdna:novel chromosome:V1.0:Gm14:31317051:31322038:-1 gene:GLYMA14G25810 transcript:GLYMA14G25810.2

2

1568

0

5

2.5

3

5'     AGGTGGGCATACTGTCAACT         3'
       |||||||||| || | ||||
3' TTTTTCCACCCGTAGGA-ATTTGAATTAATAA 5'

855

Glycine max

TCGGACCAGGCTTCATTCCC

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA04G09000.2 cdna:novel chromosome:V1.0:Gm04:7150718:7157032:1 gene:GLYMA04G09000 transcript:GLYMA04G09000.2

2

939

0

152

15.2

1.5

5'     TCGGACCAGGCTTCATTCCC         3'
       o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAAA 5'

857

Glycine max

TTCATTTTTAAAATAGGCATT

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA05G01240.4 cdna:novel chromosome:V1.0:Gm05:785189:792757:-1 gene:GLYMA05G01240 transcript:GLYMA05G01240.4

2

1884

0.01

2

0.333333

3

5'     TTCATTTTTA-AAATAGGCATT       3'
       |||||o|||| |||||||| o|
3' TTAAAAGTAGAAATGTTTATCCGAGACCATTT 5'

859

Glycine max

TTCCACAGCTTTCTTGAACTT

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA14G10100.3 cdna:novel chromosome:V1.0:Gm14:8199978:8204018:-1 gene:GLYMA14G10100 transcript:GLYMA14G10100.3

2

668

0.05

40

13.3333

3

5'    TTCCACA-GCTTTCTTGAACTT        3'
      ||||||| ||||||||||||
3' CGGAAGGTGTCCGAAAGAACTTGCTACCGCAG 5'

861

Glycine max

TTGAGCCGTGCCAATATCA

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA01G33270.1 cdna:novel chromosome:V1.0:Gm01:45164207:45167759:-1 gene:GLYMA01G33270 transcript:GLYMA01G33270.1

0

1208

0

399

133

1.5

5'     TTGAGCCGTGCCAATATCA          3'
       ||||||||o|||||||||
3' CACTAACTCGGCGCGGTTATAGGGAACGCGTA 5'

863

Glycine max

TTTGGATTGAAGGGAGCTC

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA13G34710.1 cdna:novel chromosome:V1.0:Gm13:36249608:36253233:1 gene:GLYMA13G34710 transcript:GLYMA13G34710.1

1

1214

0

20

5

2

5'     TTTGGATTGAAGGGAGCTC          3'
       ||||| |||||||| ||||
3' AACAAAACCAAACTTCCCCCGAGATAACACTT 5'

865

Glycine max

TGCCTGGCTCCCTGTATGCC

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA12G29720.1 cdna:novel chromosome:V1.0:Gm12:33175269:33178907:-1 gene:GLYMA12G29720 transcript:GLYMA12G29720.1

0

1654

0

120

0

5'     TGCCTGGCTCCCTGTATGCC         3'
       ||||||||||||||||||||
3' TCGTACGGACCGAGGGACATACGGACGTCCTC 5'

867

Glycine max

CAGAGAGCAGAAACAGAACTG

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA08G15090.1 cdna:known chromosome:V1.0:Gm08:10946832:10949797:1 gene:GLYMA08G15090 transcript:GLYMA08G15090.1

0

660

0.02

55

4

5'     CAGAGAGCAGAAACAGAACTG        3'
        |||o|| ||||||| ||||o
3' AACGATCTTTCATCTTTGT-TTGATAACAGAT 5'

869

Glycine max

TGAAGCTGCCAGCATGATCT

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA14G38940.1 cdna:novel chromosome:V1.0:Gm14:48094947:48103242:-1 gene:GLYMA14G38940 transcript:GLYMA14G38940.1

1

2943

0

160

32

3

5'     TGAAGCTGCCAGCATGATCT         3'
         ||||||||||| ||||||
3' CTTATGTTCGACGGTCGGACTAGATTCTCCCA 5'

871

Glycine max

TTGAGCCGTGCCAATATCA

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA01G18040.1 cdna:novel chromosome:V1.0:Gm01:22484145:22487576:-1 gene:GLYMA01G18040 transcript:GLYMA01G18040.1

2

1768

0

13

6.5

1.5

5'     TTGAGCCGTGCCAATATCA          3'
       ||||||||o|||||||||
3' CACTAACTCGGCGCGGTTATAGGGTACGCGCT 5'

873

Glycine max

TCCAAAGGGATCGCATTGATC

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA10G02630.1 cdna:novel chromosome:V1.0:Gm10:1861030:1864010:-1 gene:GLYMA10G02630 transcript:GLYMA10G02630.1

2

2166

0

2

0.5

1

5'     TCCAAAGGGATCGCATTGATC        3'
       |||||||||||||||||| ||
3' CTGTAGGTTTCCCTAGCGTAAC-AGAGGTCGA 5'

875

Glycine max

TTCCACAGCTTTCTTGAACTT

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA11G12140.5 cdna:novel chromosome:V1.0:Gm11:8671668:8673811:1 gene:GLYMA11G12140 transcript:GLYMA11G12140.5

0

645

0.04

17

2.83333

4

5'     TTCCACAGCTTTCTTGAACTT        3'
       ||||| ||||| ||||  |||
3' AGACAAGGTTTCGAA-GAACACGAAACTAAAG 5'

877

Glycine max

TTCCACAGCTTTCTTGAAC

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA12G01730.2 cdna:novel chromosome:V1.0:Gm12:1061212:1065353:1 gene:GLYMA12G01730 transcript:GLYMA12G01730.2

2

576

0

131

26.2

1

5'    TTCCACA-GCTTTCTTGAAC          3'
      ||||||| ||||||||||||
3' ACTAAGGTGTCCGAAAGAACTTGCCAACGCCG 5'

879

Glycine max

AGGGATAGGTAAAACAATGAC

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA12G02510.4 cdna:novel chromosome:V1.0:Gm12:1615086:1624839:1 gene:GLYMA12G02510 transcript:GLYMA12G02510.4

2

1325

0.04

56

14

4

5'     AGGGATAGGTAAAACAATGAC        3'
       | |o|||o||||||| ||||
3' CAGGT-CTTATTCATTTTGGTACTCTTTTACT 5'

881

Glycine max

CAAACCTCCGTAGCCTGTATC

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA15G06570.1 cdna:novel chromosome:V1.0:Gm15:4643944:4647571:-1 gene:GLYMA15G06570 transcript:GLYMA15G06570.1

2

2645

0

85

3

5'     CAAACCTCCGTAGCCTGTATC        3'
       |||| |||||o|o||| ||||
3' CATAGTTTTGAGGCGTTGGA-ATAGTGTCAGG 5'

883

Glycine max

ATATAGCATCGTGAGCAATCA

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA13G23520.2 cdna:known chromosome:V1.0:Gm13:26916462:26919844:-1 gene:GLYMA13G23520 transcript:GLYMA13G23520.2

1

303

0.01

16

5.33333

4

5'     ATATAGCATCGTGAGCAATCA        3'
       |||o||||||  o|o|||o||
3' AAAGTATGTCGTAGGTTTTGTTGGTGACAAGG 5'

885

Glycine max

TGAAGCTGCCAGCATGATCT

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA13G29320.2 cdna:novel chromosome:V1.0:Gm13:32246000:32253106:1 gene:GLYMA13G29320 transcript:GLYMA13G29320.2

2

3356

0.05

33

8.25

3

5'     TGAAGCTGCCAGCATGATCT         3'
         ||||||||||| ||||||
3' TTTATGTTCGACGGTCGGACTAGAGTGTCCCA 5'

887

Glycine max

TTGAGCCGTGCCAATATCA

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA11G17490.1 cdna:novel chromosome:V1.0:Gm11:13613694:13616986:1 gene:GLYMA11G17490 transcript:GLYMA11G17490.1

0

1658

0

13

6.5

1.5

5'     TTGAGCCGTGCCAATATCA          3'
       ||||||||o|||||||||
3' CACTAACTCGGCGCGGTTATAGGGCACGCGCT 5'

889

Glycine max

TGGAGAAGCAGGGCACGTGCA

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA06G21020.1 cdna:known chromosome:V1.0:Gm06:17431771:17433898:1 gene:GLYMA06G21020 transcript:GLYMA06G21020.1

2

1106

0.01

10

2

2.5

5'     TGGAGAAGCAGGGCACGTGCA        3'
       ||||||||||||||||||o
3' CCTAACCTCTTCGTCCCGTGCATTCGTCTTAG 5'

891

Glycine max

TGACAGAAGAGAGTGAGCAC

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA17G08840.2 cdna:novel chromosome:V1.0:Gm17:6526544:6532020:-1 gene:GLYMA17G08840 transcript:GLYMA17G08840.2

2

1900

0

5

1.25

1

5'     TGACAGAAGAGAGTGAGCAC         3'
       ||||||||||||| ||||||
3' CTCTACTGTCTTCTCTCTCTCGTGTTGTTCTC 5'

893

Glycine max

TCATCATCATCATCTTCTTCT

alignment

plot

GSM848965_Cot100_unique_seq_count

GLYMA08G06370.1 cdna:novel chromosome:V1.0:Gm08:4519476:4521326:1 gene:GLYMA08G06370 transcript:GLYMA08G06370.1

1

1035

0.02

6

0.428571

2.5

5'     TCATCATCATCATCTTCTTCT        3'
       ||||||||||||o| || |||
3' AAGTAGTAGTAGTAGTGGTAGTAGAAGAAGAA 5'

895

Hordeum vulgare

TCCTAAATACTTGTTGTTGGG

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_52639.4 cdna:novel chromosome:030312v2:7:533269741:533273012:1 gene:MLOC_52639 transcript:MLOC_52639.4

2

1359

0

36

3.6

0

5'     TCCTAAATACTTGTTGTTGGG        3'
       |||||||||||||||||||||
3' GGCAAGGATTTATGAACAACAACCCCTTTTGA 5'

897

Hordeum vulgare

TATGGGACGGAGGGAGTATCT

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_26643.6 cdna:novel chromosome:030312v2:4:90497913:90501180:1 gene:MLOC_26643 transcript:MLOC_26643.6

1

1113

0

20

2.85714

3.5

5'     TATGGGACGGAGGGAGTATCT        3'
       | | ||||||||o||||| ||
3' CATAAAAGCCTGCCTCTCTCAT-GAGAGAATA 5'

899

Hordeum vulgare

TATTATGGGACGGAGGGAGTA

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_58213.3 cdna:novel chromosome:030312v2:4:491585828:491587718:-1 gene:MLOC_58213 transcript:MLOC_58213.3

2

1476

0

3

0.75

1

5'     TATTATGGGACGGAGGGAGTA        3'
       |||| ||||||||||||||||
3' GTTAATAAAACCCTGCCTCCCTCATGACATAT 5'

901

Hordeum vulgare

TTTGGGACGGAGGGAGTACTG

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_53316.1 cdna:known chromosome:030312v2:1:416027895:416032751:1 gene:MLOC_53316 transcript:MLOC_53316.1

2

3455

0

8

0.888889

1

5'     TTTGGGACGGAGGGAGTACTG        3'
       ||||||||||||o|||||||o
3' AATAAAACCCTGCCTCTCTCATGATTAAATCA 5'

903

Hordeum vulgare

AGTACTTCCTCCGTCCCAAAA

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_54692.6 cdna:novel chromosome:030312v2:2:465643059:465648897:-1 gene:MLOC_54692 transcript:MLOC_54692.6

2

1187

0

12

2

3

5'     AGTACTTCCTCCGTCCCAAAA        3'
       |o||||o|||| ||| |||||
3' TACTTTATGAGGGAGACAGTGTTTTCTATTCA 5'

905

Hordeum vulgare

TATTTCTTTACAGAGGGAGTA

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_56099.2 cdna:novel chromosome:030312v2:5:215441467:215449220:-1 gene:MLOC_56099 transcript:MLOC_56099.2

2

1492

0.05

12

2

3

5'     TATTTCTTTACAGAGGGAGTA        3'
       || |o|||||||o|o||||o|
3' TCATAT-AGGAAATGTTTTCCTCGTTATCGTC 5'

907

Hordeum vulgare

GTACTCCCTCCGTCCTAAAAT

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_52900.2 cdna:novel chromosome:030312v2:3HS:1323545:1325511:1 gene:MLOC_52900 transcript:MLOC_52900.2

2

1428

0.05

10

5

3.5

5'     GTACTCCCTCCGTCCTAAAAT        3'
       | ||| ||||||| |o|||||
3' GTGAC-TGATGGAGGCATGGTTTTATATTCAG 5'

909

Hordeum vulgare

GAGCTCCTATCATTCCAATGA

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_10773.6 cdna:novel chromosome:030312v2:2:455211817:455213748:-1 gene:MLOC_10773 transcript:MLOC_10773.6

2

617

0

18

3

5'     GAGCTCCTATCATTCCAATGA        3'
       ||o|| |o||||oo|||||||
3' AGTTCTTGACGGTAGTGGGGTTACTATTTTCG 5'

911

Hordeum vulgare

TCGGACCAGGCTTCATTCCC

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_79063.2 cdna:novel chromosome:030312v2:3:89144249:89147977:-1 gene:MLOC_79063 transcript:MLOC_79063.2

2

146

0

65

7.22222

1.5

5'     TCGGACCAGGCTTCATTCCC         3'
       o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAAA 5'

913

Hordeum vulgare

TGACAGAAGAGAGTGAGCACA

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_11199.7 cdna:known chromosome:030312v2:6HS:3424827:3430372:-1 gene:MLOC_11199 transcript:MLOC_11199.7

0

2791

0.02

20

2.85714

3

5'     TGACAGAAGAGAGTGAGCACA        3'
       ||||||||||||| |||||
3' ACGAACTGTCTTCTCTCTCTCGTACGACTTCT 5'

915

Hordeum vulgare

TTATTTTGGGACGGAGGGAGT

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_34489.2 cdna:known chromosome:030312v2:1H:14965287:14969538:1 gene:MLOC_34489 transcript:MLOC_34489.2

2

1238

0

11

5.5

2.5

5'     TTATTTTGGGACGGAGGGAGT        3'
       |o|||o|||||| ||o|||||
3' AGTGAGTAAGACCCTGACTTCCTCATGTTTTA 5'

917

Hordeum vulgare

ACTCCCTCTGTCCCAAAATAG

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_52900.2 cdna:novel chromosome:030312v2:3HS:1323545:1325511:1 gene:MLOC_52900 transcript:MLOC_52900.2

2

1426

0.04

11

5.5

3.5

5'     ACTCCCTCTGTCCCAAAATAG        3'
       ||| ||||o|| ||||||||
3' TGACTGATGGAGGCATGGTTTTATATTCAGCA 5'

919

Hordeum vulgare

CGATTCCGTAGTCCATGAGCG

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_10392.3 cdna:novel chromosome:030312v2:2:29135635:29144630:1 gene:MLOC_10392 transcript:MLOC_10392.3

2

2695

0.04

8

0.888889

3

5'     CGATTCCGTAGTCCATGAGCG        3'
       |||| ||||||| ||| ||||
3' TTTAGCTATGGCATCATGTA-TCGCCATTCGC 5'

921

Hordeum vulgare

TATATACTCCCTCCGTCCGGA

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_20184.2 cdna:novel chromosome:030312v2:3HS:1959986:1965218:1 gene:MLOC_20184 transcript:MLOC_20184.2

2

1847

0.02

40

13.3333

2.5

5'     TATATACTCCCTCCGTCCGGA        3'
       o| ||||||||||||| ||||
3' AAAAGTTTATGAGGGAGGCAAGCCTTTGTTCA 5'

923

Hordeum vulgare

TTTGGGACGGAGGGAGTACTG

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_55628.1 cdna:novel chromosome:030312v2:6:459158255:459167089:-1 gene:MLOC_55628 transcript:MLOC_55628.1

2

4138

0.01

61

7.625

2.5

5'     TTTGGGACGGAGGGAGTACTG        3'
       || ||o||||| |||||||||
3' TATAAATCCTTGCCTACCTCATGACCTGTGCC 5'

925

Hordeum vulgare

TTTTGGGACGGAGTGAGTATT

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_26643.6 cdna:novel chromosome:030312v2:4:90497913:90501180:1 gene:MLOC_26643 transcript:MLOC_26643.6

2

1114

0.01

11

1.57143

2.5

5'     TTTTGGGACGGAGTGAGTATT        3'
       |||| |||||||| |||||o|
3' TCATAAAAGCCTGCCTCTCTCATGAGAGAATA 5'

927

Hordeum vulgare

TTTTGGAACGGAGGGAGTA

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_26643.6 cdna:novel chromosome:030312v2:4:90497913:90501180:1 gene:MLOC_26643 transcript:MLOC_26643.6

2

1114

0

11

1.57143

2

5'     TTTTGGAACGGAGGGAGTA          3'
       |||o|| ||||||o|||||
3' CATAAAAGCC-TGCCTCTCTCATGAGAGAATA 5'

929

Hordeum vulgare

AAGCCAAGGATGAGTTGCCTG

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_62730.2 cdna:known chromosome:030312v2:4:501096251:501099501:1 gene:MLOC_62730 transcript:MLOC_62730.2

2

1014

0

98

32.6667

2

5'     AAGCCAAGGATGAGTTGCCTG        3'
       ||||||||||||| ||||| |
3' TGTATTCGGTTCCTACTAAACGGTCCCCCGTT 5'

931

Hordeum vulgare

CCGTTGAGTGCAGCGTTGATG

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_57090.1 cdna:novel chromosome:030312v2:6HS:3576185:3577861:-1 gene:MLOC_57090 transcript:MLOC_57090.1

2

1285

0

6

0

5'     CCGTTGAGTGCAGCGTTGATG        3'
       |||||||||||||||||||||
3' CCACGGCAACTCACGTCGCAACTACTTGGCAG 5'

933

Hordeum vulgare

AAGCCAAGGATGAGTTGCCTG

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_76757.4 cdna:known chromosome:030312v2:5:17021024:17025606:1 gene:MLOC_76757 transcript:MLOC_76757.4

0

1653

0

45

7.5

3

5'     AAGCCAAGGATGAGTTGCCTG        3'
        |||||||o||||o|||||oo
3' GGTACTCGGTTCTTACTTAACGGGTGCCTGTC 5'

935

Hordeum vulgare

TTTTGGGACAGAGGGAGTAGA

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_58251.5 cdna:known chromosome:030312v2:1:402469628:402477057:1 gene:MLOC_58251 transcript:MLOC_58251.5

2

3068

0.01

8

1

3

5'     TTTTGGGACAGAGGGAGTAGA        3'
       ||| || |||||||||||| |
3' TCATAAATCCATGTCTCCCTCAT-TGTCGCAT 5'

937

Hordeum vulgare

TTATTTTGGGACGGAGGGAGT

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_62418.1 cdna:known chromosome:030312v2:1:405153016:405156721:-1 gene:MLOC_62418 transcript:MLOC_62418.1

2

151

0

3

2

5'     TTATTTTGGGACGGAGGGAGT        3'
        ||||| ||||||||||||||
3' CTGATATAAATCCCTGCCTCCCTCATCTAGGA 5'

939

Hordeum vulgare

ATTATGGAACGGAGGGAGT

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_4326.11 cdna:novel chromosome:030312v2:5:483673941:483679038:1 gene:MLOC_4326 transcript:MLOC_4326.11

2

172

0.01

6

2

5'     ATTATGGAACGGAGGGAGT          3'
       ||| ||| |||||||||||
3' TAAATAAAACCCTGCCTCCCTCATCTAGAAAG 5'

941

Hordeum vulgare

TATTATGGGACGGAGGGAGTA

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_56507.1 cdna:novel chromosome:030312v2:2:24894587:24898152:1 gene:MLOC_56507 transcript:MLOC_56507.1

1

1143

0

4

0.8

2

5'     TATTATGGGACGGAGGGAGTA        3'
       o||||||||| |o||||||||
3' GAATGTAATACCCTCCTTCCCTCATTCTTAAT 5'

943

Hordeum vulgare

TATTATGGGACGGAGGGAGTA

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_65095.2 cdna:novel chromosome:030312v2:4HL:22603070:22604387:-1 gene:MLOC_65095 transcript:MLOC_65095.2

1

1159

0.01

17

5.66667

1.5

5'     TATTATGGGACGGAGGGAGTA        3'
       |||| |||||||o||||||||
3' ATGAATAAAACCCTGCTTCCCTCATCATAGAT 5'

945

Hordeum vulgare

TATTATGGGACGGAGGGAGTA

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_58552.5 cdna:novel chromosome:030312v2:2:475555959:475559690:-1 gene:MLOC_58552 transcript:MLOC_58552.5

2

466

0

4

0.8

2

5'     TATTATGGGACGGAGGGAGTA        3'
       o||||||||||o| |||||||
3' GAATGTAATACCCTGTCGCCCTCATTAAAGAT 5'

947

Hordeum vulgare

TCGGACCAGGCTTCATTCCC

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_61603.3 cdna:known chromosome:030312v2:1:192064052:192072095:-1 gene:MLOC_61603 transcript:MLOC_61603.3

0

1046

0

80

16

1.5

5'     TCGGACCAGGCTTCATTCCC         3'
       o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAGC 5'

949

Hordeum vulgare

TCGGACCAGGCTTCATTCC

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_33978.4 cdna:novel chromosome:030312v2:5:492709362:492713465:-1 gene:MLOC_33978 transcript:MLOC_33978.4

0

622

0

65

7.22222

1

5'     TCGGACCAGGCTTCATTCC          3'
       o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTTGGTAAAC 5'

951

Hordeum vulgare

CTTCCGTCCCAAAATAAGTGA

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_75925.3 cdna:known chromosome:030312v2:3HL:6935342:6940187:1 gene:MLOC_75925 transcript:MLOC_75925.3

2

1790

0.02

12

3

5'     CTTCCGTCCCAAAATAAGTGA        3'
         ||||||||||||||||||
3' TGAAACAGGCAGGGTTTTATTCACAGAGTTGA 5'

953

Hordeum vulgare

GCCACCGCAGCCGCTGCCGCA

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_54588.1 cdna:known chromosome:030312v2:3:423499986:423508987:1 gene:MLOC_54588 transcript:MLOC_54588.1

2

244

0

8

4

2

5'     GCCACCGCAGCCGCTGCCGCA        3'
       |||||||| |||||||||||
3' GGTCCGGTGGCGACGGCGACGGCGGCGGTGGG 5'

955

Hordeum vulgare

AATGCTCATATGCATCACAAT

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_13246.3 cdna:novel chromosome:030312v2:7:21323731:21327547:1 gene:MLOC_13246 transcript:MLOC_13246.3

0

848

0.05

19

6.33333

4

5'     AATGCTCATATGCATCACAAT        3'
        || |o||||o||| ||||||
3' GTAAATA-GGGTATGCGTTGTGTTATCACAAG 5'

957

Hordeum vulgare

TATAGTACTCCCTCCGTCCCG

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_9522.1 cdna:novel chromosome:030312v2:1:124351345:124353037:1 gene:MLOC_9522 transcript:MLOC_9522.1

2

714

0.01

13

2.5

5'     TATAGTACTCCCTCCGTCCCG        3'
        ||| |||||||||||||||o
3' TCATCTATGATGAGGGAGGCAGGGTATTTTCA 5'

959

Hordeum vulgare

TTTTGGGACAGAGGAAGTACT

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_5651.2 cdna:known chromosome:030312v2:4:87404865:87410843:-1 gene:MLOC_5651 transcript:MLOC_5651.2

2

2107

0.01

8

4

3

5'     TTTTGGGACAGAGGAAGTACT        3'
       ||| || |||||||||||||
3' CAATAAATCCATGTCTCCTTCATGTGGATATC 5'

961

Hordeum vulgare

CTGACAGAAGAGAGTGAGCAC

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_61297.1 cdna:known chromosome:030312v2:7:224856072:224859310:-1 gene:MLOC_61297 transcript:MLOC_61297.1

2

788

0.01

6

2

5'     CTGACAGAAGAGAGTGAGCAC        3'
        ||||||||||||| ||||||
3' ACTCAACTGTCTTCTCTCTCTCGTGTCGACCT 5'

963

Hordeum vulgare

TTTTGGGTCAGAGGGAGTATC

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_54045.8 cdna:novel chromosome:030312v2:7:380757072:380758954:1 gene:MLOC_54045 transcript:MLOC_54045.8

0

119

0

89

29.6667

3.5

5'     TTTTGGGTCAGAGGGAGTATC        3'
        |||o||| |||||||||||
3' TTCATAAATCCA-TCTCCCTCATATATTTTTC 5'

965

Hordeum vulgare

TGTTACTCCCTCCGTCCGAAA

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_14460.1 cdna:novel chromosome:030312v2:2:547147066:547152122:1 gene:MLOC_14460 transcript:MLOC_14460.1

2

2935

0.01

29

14.5

3.5

5'     TGTTACTCCCTCCGTCCGAAA        3'
       ||||| || ||||o|||| ||
3' TTTGACAATAAGCGAGGTAGGCCTTTTACCCT 5'

967

Hordeum vulgare

ATATTATGGGACGGAGGGAGG

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_13746.1 cdna:novel chromosome:030312v2:7HS:12098986:12101271:-1 gene:MLOC_13746 transcript:MLOC_13746.1

2

636

0

9

4.5

2.5

5'     ATATTATGGGACGGAGGGAGG        3'
       ||||||o|||||||| ||||
3' AGAATATAATGCCCTGCCTACCTCATCTAATA 5'

969

Hordeum vulgare

TTTTGGAACGGAGGGAGTATA

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_26643.8 cdna:novel chromosome:030312v2:4:90497928:90501178:1 gene:MLOC_26643 transcript:MLOC_26643.8

2

1076

0.05

11

1.57143

3.5

5'     TTTTGGAACGGAGGGAGTATA        3'
       |||o|| ||||||o|||||o
3' CATAAAAGCC-TGCCTCTCTCATGAGAGAATA 5'

971

Hordeum vulgare

CTGACAGAAGAGAGTGAGCAC

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_52321.2 cdna:known chromosome:030312v2:3:518753339:518756802:-1 gene:MLOC_52321 transcript:MLOC_52321.2

2

691

0

4

1

5'     CTGACAGAAGAGAGTGAGCAC        3'
       |||||||||||||| ||||||
3' AACAGACTGTCTTCTCTCTCTCGTGTCAACAC 5'

973

Hordeum vulgare

TATTATGGGACGGAGGGAGTA

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_58213.4 cdna:novel chromosome:030312v2:4:491585850:491587608:-1 gene:MLOC_58213 transcript:MLOC_58213.4

2

1469

0

3

0.75

1

5'     TATTATGGGACGGAGGGAGTA        3'
       |||| ||||||||||||||||
3' GTTAATAAAACCCTGCCTCCCTCATGACATAT 5'

975

Hordeum vulgare

TATTATGGGACGGAGGGAGTA

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_72849.6 cdna:known chromosome:030312v2:5:32062940:32069184:-1 gene:MLOC_72849 transcript:MLOC_72849.6

2

870

0

9

1.8

2

5'     TATTATGGGACGGAGGGAGTA        3'
       |||| |||||||||||||| |
3' GTGAATAAAACCCTGCCTCCCTCCTATACTGT 5'

977

Hordeum vulgare

AGGGTCATCTGTGACGGGCTC

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_55673.10 cdna:known chromosome:030312v2:2:379955737:379958978:-1 gene:MLOC_55673 transcript:MLOC_55673.10

2

1317

0.01

16

5.33333

3

5'     AGGGTCATCTGTGACGGGCTC        3'
       |||o|||||||||||o|  ||
3' CAGGTCCTAGTAGACACTGTCGAAGAAGAGGT 5'

979

Hordeum vulgare

TCCCTCTGTAAACAAATATAG

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_56418.3 cdna:known chromosome:030312v2:4:419972008:419977821:1 gene:MLOC_56418 transcript:MLOC_56418.3

2

3209

0

20

2.5

5'     TCCCTCTGTAAACAAATATAG        3'
       ||||||o||||| |||||| |
3' CATTAGGGAGGCATTTCTTTATA-CTCACAAA 5'

981

Hordeum vulgare

AAACATAGAGAAGTATGACTT

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_57585.6 cdna:novel chromosome:030312v2:7:568935343:568939061:-1 gene:MLOC_57585 transcript:MLOC_57585.6

1

1533

0

3

3.5

5'     AAACATAGAGAAGTATGACTT        3'
       ||||| ||||||| | |||o|
3' TTAGTTTGTCTCTCTTCCT-CTGGACTTTAAT 5'

983

Hordeum vulgare

TTTTGGGACGGAGTGAGTATT

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_72849.6 cdna:known chromosome:030312v2:5:32062940:32069184:-1 gene:MLOC_72849 transcript:MLOC_72849.6

2

868

0.05

18

3.6

3

5'     TTTTGGGACGGAGTGAGTATT        3'
       ||||||||||||| ||| ||
3' GAATAAAACCCTGCCTCCCTCCTATACTGTGG 5'

985

Hordeum vulgare

TTTGGGACGGAGGGAGTACTG

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_69670.1 cdna:known chromosome:030312v2:7HS:11964591:11968606:-1 gene:MLOC_69670 transcript:MLOC_69670.1

2

1636

0

8

4

2

5'     TTTGGGACGGAGGGAGTACTG        3'
       |||||o|||||||||||| |o
3' AATAAAACCTTGCCTCCCTCAT-ATTATTAAA 5'

987

Hordeum vulgare

TATTATGGGACGGAGGGAGTA

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_69518.1 cdna:novel chromosome:030312v2:7:523831801:523835346:1 gene:MLOC_69518 transcript:MLOC_69518.1

2

1103

0

9

1.8

1

5'     TATTATGGGACGGAGGGAGTA        3'
       |||| ||||||||||||||||
3' GTGAATAAAACCCTGCCTCCCTCATAAAGAAA 5'

989

Hordeum vulgare

ATACTCCCTTCGTTCCAAAAT

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_60590.1 cdna:known chromosome:030312v2:5:438053681:438055320:-1 gene:MLOC_60590 transcript:MLOC_60590.1

2

1125

0.02

20

3

5'     ATACTCCCTTCGTTCCAAAAT        3'
       |||| ||||| ||| ||||||
3' ATCGTATGTGGGAA-CAACGTTTTAGTGTAAT 5'

991

Hordeum vulgare

TTTTGGGACGGAGTGAGTATT

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_66594.2 cdna:novel chromosome:030312v2:6:167557563:167563549:-1 gene:MLOC_66594 transcript:MLOC_66594.2

2

287

0

18

3.6

2

5'     TTTTGGGACGGAGTGAGTATT        3'
       ||||||||||||| ||||| |
3' GAATAAAACCCTGCCTCCCTCATCAAACGTTG 5'

993

Hordeum vulgare

TTTTGGGACGGAGTGAGTATT

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_40346.1 cdna:novel chromosome:030312v2:7HS:34897922:34898994:-1 gene:MLOC_40346 transcript:MLOC_40346.1

2

191

0.01

3

1.5

3

5'     TTTTGGGACGGAGTGAGTATT        3'
       ||||||||||||| o||||o
3' GAATAAAACCCTGCCTCCTTCATGTCATATTA 5'

995

Hordeum vulgare

TGACAGAAGAGAGTGAGCACA

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_13032.1 cdna:novel contig:220312v1:morex_contig_1564635:477:3263:1 gene:MLOC_13032 transcript:MLOC_13032.1

2

750

0.03

5

3

5'     TGACAGAAGAGAGTGAGCACA        3'
       ||||||||||||| |||||
3' ACGTACTGTCTTCTCTCCCTCGTACGAATCCA 5'

997

Hordeum vulgare

TTTGGATTGAAGGGAGCTCTG

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_71332.1 cdna:novel chromosome:030312v2:3:466323274:466326190:-1 gene:MLOC_71332 transcript:MLOC_71332.1

2

869

0.01

64

32

2.5

5'     TTTGGATTGAAGGGAGCTCTG        3'
       o||||| ||||||||||||oo
3' CATAGAACCTCACTTCCCTCGAGGTAGAAGTT 5'

999

Hordeum vulgare

TGCAGTTGCTGTCTCAAGCTT

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_36835.2 cdna:known chromosome:030312v2:3HL:7674503:7678074:1 gene:MLOC_36835 transcript:MLOC_36835.2

0

644

0.02

10

5

3.5

5'     TGCAGTTGCTGTCTCAAGCTT        3'
       |||||||||||o|o||| |o
3' TCTTACGTCAACGACGGGGTTAGGTCGACTAG 5'

1001

Hordeum vulgare

TTTGGGACGGAGGGAGTACTG

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_22135.1 cdna:novel chromosome:030312v2:5:525347519:525349048:-1 gene:MLOC_22135 transcript:MLOC_22135.1

2

1407

0.03

8

4

3

5'     TTTGGGACGGAGGGAGTACTG        3'
       |||||o||||||o|||o| |o
3' AATAAAACCTTGCCTCTCTCGTCATGTAATAT 5'

1003

Hordeum vulgare

TTTTGGGACGGAGGGAGTAAC

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_76689.9 cdna:novel chromosome:030312v2:6:484423834:484425583:-1 gene:MLOC_76689 transcript:MLOC_76689.9

2

1497

0.01

3

1.5

3

5'     TTTTGGGACGGAGGGAGTAAC        3'
       ||| ||o|||o|||||||| |
3' TTATAAATCCTTGCTTCCCTCAT-GATTGATG 5'

1005

Hordeum vulgare

TTTTGGGACGGAGTGAGTATT

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_72495.1 cdna:known chromosome:030312v2:3:542235938:542240994:1 gene:MLOC_72495 transcript:MLOC_72495.1

2

1798

0

16

2

5'     TTTTGGGACGGAGTGAGTATT        3'
       ||||o|||||||| |||||o|
3' CAATAAAATCCTGCCTCCCTCATGATGCTTTC 5'

1007

Hordeum vulgare

TTTAGGAACGGAGTGAGTAGT

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_72495.1 cdna:known chromosome:030312v2:3:542235938:542240994:1 gene:MLOC_72495 transcript:MLOC_72495.1

2

1798

0.03

16

3

5'     TTTAGGAACGGAGTGAGTAGT        3'
       |||||| |||||| ||||| |
3' AATAAAATCC-TGCCTCCCTCATGATGCTTTC 5'

1009

Hordeum vulgare

TTTGGGACGGAGGGAGTACTG

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_53358.5 cdna:known chromosome:030312v2:1:271628792:271630780:-1 gene:MLOC_53358 transcript:MLOC_53358.5

2

1782

0

61

7.625

2.5

5'     TTTGGGACGGAGGGAGTA-CTG       3'
       || ||o|||||||||||| |||
3' TATAAATCCTTGCCTCCCTCATAGACTATCCT 5'

1011

Hordeum vulgare

TTATTTTGGGACGGAGGGAGT

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_34489.5 cdna:novel chromosome:030312v2:1H:14966757:14969573:1 gene:MLOC_34489 transcript:MLOC_34489.5

2

2758

0

11

5.5

2.5

5'     TTATTTTGGGACGGAGGGAGT        3'
       |o|||o|||||| ||o|||||
3' AGTGAGTAAGACCCTGACTTCCTCATGTTTTA 5'

1013

Hordeum vulgare

TTTGGGACGGAGGGAGTACTG

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_37946.5 cdna:novel chromosome:030312v2:5:188989229:188992900:1 gene:MLOC_37946 transcript:MLOC_37946.5

2

188

0.01

8

2

2.5

5'     TTTGGGACGGAGGGAGTACTG        3'
       ||||||||o||||||||| |
3' AATAAAACCCTGTCTCCCTCATAAACAGATCA 5'

1015

Hordeum vulgare

TATACTCCCTCCGTCCGAAAT

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_67470.1 cdna:known chromosome:030312v2:2:576417261:576422103:-1 gene:MLOC_67470 transcript:MLOC_67470.1

2

1986

0.01

18

3

5'    TA-TACTCCCTCCGTCCGAAAT        3'
      || |||||||||||||| |||
3' AAGATGATGAGGGAGGCAGGATTTTATTCNNN 5'

1017

Hordeum vulgare

CTCCGTTCCTAAATATAAGTT

alignment

plot

GSE38755_PARE-unique.norm.11-15_DPA

MLOC_72099.7 cdna:novel chromosome:030312v2:5:545657294:545660369:1 gene:MLOC_72099 transcript:MLOC_72099.7

2

116

0.01

3

1.5

2.5

5'     CTCCGTTCCTAAATATA-AGTT       3'
       ||||||||||||||||| |o |
3' GAGGGAGGCAAGGATTTATATATTCAAATAGC 5'

1019

Hordeum vulgare

TATGGGACGGAGGGAGTATCT

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_78266.1 cdna:novel chromosome:030312v2:3HL:8993115:8994352:-1 gene:MLOC_78266 transcript:MLOC_78266.1

2

1206

0.05

9

4.5

3.5

5'     TATGGGACGGAGGGAGTATCT        3'
       || ||o||||||| ||||| |
3' ATAAAT-CCTTGCCTCCATCATATAAAAACGT 5'

1021

Hordeum vulgare

TATAGTACTCCCTCCGTCCGG

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_26643.6 cdna:novel chromosome:030312v2:4:90497913:90501180:1 gene:MLOC_26643 transcript:MLOC_26643.6

2

1217

0.01

21

3

5'     TATAGTACTCCCTCCGTCCGG        3'
       ||o| |||||||| |o|||||
3' TATGATGT-ATGAGGGAAGTAGGCCTTAATGA 5'

1023

Hordeum vulgare

TTTGGGACGGAGGGAGTACTG

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_26643.6 cdna:novel chromosome:030312v2:4:90497913:90501180:1 gene:MLOC_26643 transcript:MLOC_26643.6

2

1113

0

20

2.85714

2.5

5'     TTTGGGACGGAGGGAGTACTG        3'
       ||| ||||||||o|||||||
3' CATAAAAGCCTGCCTCTCTCATGAGAGAATAG 5'

1025

Hordeum vulgare

TATTATGGGACGGAGGGAGTA

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_48886.1 cdna:novel contig:220312v1:morex_contig_331488:20:2271:1 gene:MLOC_48886 transcript:MLOC_48886.1

2

112

0

5

2

5'     TATTATGGGACGGAGGGAGTA        3'
       |||| ||||| ||||||||||
3' GTGAATAAAACCCTACCTCCCTCATGTTTTAT 5'

1027

Hordeum vulgare

TGTACTCCCTCCGTTCCTAAA

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_63462.2 cdna:known chromosome:030312v2:2:53816820:53821954:1 gene:MLOC_63462 transcript:MLOC_63462.2

2

1825

0.02

10

5

3

5'     TGTACTCCCTCCGTTCCTAAA        3'
       | ||||||||||o|o|| |||
3' TAATAGATGAGGGAGGTAGGGTTTTATTCACA 5'

1029

Hordeum vulgare

TCGGACCAGGCTTCATTCC

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_79063.2 cdna:novel chromosome:030312v2:3:89144249:89147977:-1 gene:MLOC_79063 transcript:MLOC_79063.2

0

146

0

152

16.8889

1

5'     TCGGACCAGGCTTCATTCC          3'
       o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTCCGTAAAC 5'

1031

Hordeum vulgare

AGTACTTCCTCCGTCCCAAAA

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_10600.5 cdna:novel chromosome:030312v2:6:354028574:354033288:-1 gene:MLOC_10600 transcript:MLOC_10600.5

2

1613

0.01

10

5

3

5'     AGTACTTCCTCCGTCCCAAAA        3'
       | ||||||||| || ||||||
3' TTAGT-ATGAAGGAGACATGGTTTTATTAACA 5'

1033

Hordeum vulgare

TGACAGAAGAGAGTGAGCACA

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_11199.7 cdna:known chromosome:030312v2:6HS:3424827:3430372:-1 gene:MLOC_11199 transcript:MLOC_11199.7

0

2791

0

52

7.42857

3

5'     TGACAGAAGAGAGTGAGCACA        3'
       ||||||||||||| |||||
3' ACGAACTGTCTTCTCTCTCTCGTACGACTTCT 5'

1035

Hordeum vulgare

TTTTGGGACGGAGGGAGTAT

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_78266.1 cdna:novel chromosome:030312v2:3HL:8993115:8994352:-1 gene:MLOC_78266 transcript:MLOC_78266.1

2

1207

0.03

5

2.5

5'     TTTTGGGACGGAGGGAGTAT         3'
       ||| ||o||||||| |||||
3' ACATAAATCCTTGCCTCCATCATATAAAAACG 5'

1037

Hordeum vulgare

TTTGGATTGAAGGGAGCTCTG

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_4149.1 cdna:novel chromosome:030312v2:7:96045484:96047844:-1 gene:MLOC_4149 transcript:MLOC_4149.1

0

734

0

9

1.8

3.5

5'     TTTGGATTGAAGGGAGCTCTG        3'
       |||| |o|o||||||o|| ||
3' TAAGAAACGTGATTTCCCTTGA-ACGAAGCAT 5'

1039

Hordeum vulgare

TTTTGGGACGGAGGGAGTAAC

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_26643.6 cdna:novel chromosome:030312v2:4:90497913:90501180:1 gene:MLOC_26643 transcript:MLOC_26643.6

2

1114

0

13

1.85714

2.5

5'     TTTTGGGACGGAGGGAGTAAC        3'
       |||| ||||||||o||||| |
3' TCATAAAAGCCTGCCTCTCTCAT-GAGAGAAT 5'

1041

Hordeum vulgare

TCCACAGGCTTTCTTGAACTG

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_64055.3 cdna:novel chromosome:030312v2:7HS:3568107:3569803:-1 gene:MLOC_64055 transcript:MLOC_64055.3

0

831

0

259

64.75

1

5'     TCCACAGGCTTTCTTGAACTG        3'
       ||||||||||||||||||| |
3' ACCAAGGTGTCCGAAAGAACTTGCCAAGAACG 5'

1043

Hordeum vulgare

ACTCCCTCCGTCCTAAAATGT

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_52900.2 cdna:novel chromosome:030312v2:3HS:1323545:1325511:1 gene:MLOC_52900 transcript:MLOC_52900.2

2

1426

0.02

12

6

3

5'     ACTCCCTCCGTCCTAAAATGT        3'
       ||| ||||||| |o|||||o|
3' TGACTGATGGAGGCATGGTTTTATATTCAGCA 5'

1045

Hordeum vulgare

AAGCCAAGGATGAGTTGCCTG

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_62730.2 cdna:known chromosome:030312v2:4:501096251:501099501:1 gene:MLOC_62730 transcript:MLOC_62730.2

0

1014

0

225

75

2

5'     AAGCCAAGGATGAGTTGCCTG        3'
       ||||||||||||| ||||| |
3' TGTATTCGGTTCCTACTAAACGGTCCCCCGTT 5'

1047

Hordeum vulgare

CTGACAGAAGAGAGTGAGCAC

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_11199.1 cdna:known chromosome:030312v2:6HS:3424576:3430071:-1 gene:MLOC_11199 transcript:MLOC_11199.1

2

2682

0.04

29

4.14286

3

5'     CTGACAGAAGAGAGTGAGCAC        3'
        ||||||||||||| |||||
3' AACGAACTGTCTTCTCTCTCTCGTACGACTTC 5'

1049

Hordeum vulgare

GTATTCCCTCCGTCCCAAATA

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_58351.3 cdna:novel chromosome:030312v2:5:550929856:550930292:1 gene:MLOC_58351 transcript:MLOC_58351.3

2

240

0.01

5

2.5

3

5'     GTATTCCCTCCGTCCCAAATA        3'
        ||o|||||||o||||||| |
3' GGTTGATGAGGGAGGTAGGGTTT-TATATTCT 5'

1051

Hordeum vulgare

TTTGGGACGGAGGGAGTACTG

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_71605.1 cdna:novel chromosome:030312v2:6:536383101:536385272:-1 gene:MLOC_71605 transcript:MLOC_71605.1

0

1926

0.03

9

1.125

4

5'    TTTGGG-ACGGAGGGAGTACTG        3'
      |||o|| ||o||||||||||
3' CATAAATCCATGTCTCCCTCATGTATCATACT 5'

1053

Hordeum vulgare

TCGCTTGGTGCAGATCGGGAC

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_12447.3 cdna:novel chromosome:030312v2:7:8067698:8073409:1 gene:MLOC_12447 transcript:MLOC_12447.3

2

249

0.03

50

10

3

5'     TCGCTTGGTGCAGATCGGGAC        3'
       | ||||||||||| ||||||
3' GACCA-CGAACCACGTCGAGCCCTTGACAAGA 5'

1055

Hordeum vulgare

AAGCCAAGGATGAGTTGCCTG

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_76757.4 cdna:known chromosome:030312v2:5:17021024:17025606:1 gene:MLOC_76757 transcript:MLOC_76757.4

2

1653

0.04

31

5.16667

3

5'     AAGCCAAGGATGAGTTGCCTG        3'
        |||||||o||||o|||||oo
3' GGTACTCGGTTCTTACTTAACGGGTGCCTGTC 5'

1057

Hordeum vulgare

CTTCCGTCCCAAAATAAGTGA

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_52653.1 cdna:known chromosome:030312v2:7HS:3583589:3589465:-1 gene:MLOC_52653 transcript:MLOC_52653.1

2

1192

0

7

1.5

5'     CTTCCGTCCCAAAATAAGTGA        3'
       |o||||| |||||||||||||
3' TGAGGGAGGCAAGGTTTTATTCACTGAGTTCG 5'

1059

Hordeum vulgare

TATTATGGGACGGAGGGAGTA

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_51067.6 cdna:novel chromosome:030312v2:7HL:926384:935090:1 gene:MLOC_51067 transcript:MLOC_51067.6

2

2915

0

10

2.5

2

5'     TATTATGGGACGGAGGGAGTA        3'
        ||| ||||||||||||||||
3' GTTCTTAAAACCCTGCCTCCCTCATGATTTTA 5'

1061

Hordeum vulgare

TATTATGGGACGGAGGGAGTA

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_57414.3 cdna:known chromosome:030312v2:4:530999410:531002030:-1 gene:MLOC_57414 transcript:MLOC_57414.3

2

1265

0.02

5

1.66667

3

5'     TATTATGGGACGGAGGGAGTA        3'
       |||| |||o||o| |||||||
3' GTAAATAAAACCTTGTCCCCCTCATCATCTCC 5'

1063

Hordeum vulgare

ACATTATGGGACGGAGGGAGT

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_4643.4 cdna:known chromosome:030312v2:2:411917930:411924478:-1 gene:MLOC_4643 transcript:MLOC_4643.4

2

3231

0

8

2

3

5'     ACATTATGGGACGGAGGGAGT        3'
       || |o|||||| |||o|||||
3' CGTGTG-AGTACCCTACCTTCCTCATAAACTA 5'

1065

Hordeum vulgare

ATATTATGGGACGGAGGGAGG

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_56507.1 cdna:novel chromosome:030312v2:2:24894587:24898152:1 gene:MLOC_56507 transcript:MLOC_56507.1

0

1144

0.01

10

2

3

5'     ATATTATGGGACGGAGGGAGG        3'
       |o||||||||| |o||||||
3' AGAATGTAATACCCTCCTTCCCTCATTCTTAA 5'

1067

Hordeum vulgare

TATTTGCAGGTTTTAGGTCTAA

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_70446.3 cdna:novel chromosome:030312v2:7:2801779:2804764:1 gene:MLOC_70446 transcript:MLOC_70446.3

2

1363

0

14

1.75

2.5

5'     TATTTGCAGGTTTTAGGTCTAA       3'
       o||||||||||||||o|||o|
3' TTTTGTAAACGTCCAAAATTCAGGTCTACCTT 5'

1069

Hordeum vulgare

TATTATGGGACGGAGGGAGTA

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_56507.1 cdna:novel chromosome:030312v2:2:24894587:24898152:1 gene:MLOC_56507 transcript:MLOC_56507.1

2

1143

0

8

1.6

2

5'     TATTATGGGACGGAGGGAGTA        3'
       o||||||||| |o||||||||
3' GAATGTAATACCCTCCTTCCCTCATTCTTAAT 5'

1071

Hordeum vulgare

CTTATATTATGGGACGGAGGG

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_58552.5 cdna:novel chromosome:030312v2:2:475555959:475559690:-1 gene:MLOC_58552 transcript:MLOC_58552.5

2

470

0

12

1.5

2

5'     CTTATATTATGGGACGGAGGG        3'
       ||||o||||||||||o| |||
3' TGCAGAATGTAATACCCTGTCGCCCTCATTAA 5'

1073

Hordeum vulgare

ACTCCCTCTGTCCCAAAATAG

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_32803.1 cdna:novel chromosome:030312v2:5:559812611:559815128:-1 gene:MLOC_32803 transcript:MLOC_32803.1

2

1588

0

8

4

1

5'     ACTCCCTCTGTCCCAAAATAG        3'
       ||||||||||| |||||||||
3' ATGATGAGGGAGACAAGGTTTTATCCACAGAG 5'

1075

Hordeum vulgare

TCGGACCAGGCTTCATTCC

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_61603.3 cdna:known chromosome:030312v2:1:192064052:192072095:-1 gene:MLOC_61603 transcript:MLOC_61603.3

0

1046

0

164

32.8

1

5'     TCGGACCAGGCTTCATTCC          3'
       o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTCCGTAGCC 5'

1077

Hordeum vulgare

TCGGACCAGGCTTCATTCC

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_33978.4 cdna:novel chromosome:030312v2:5:492709362:492713465:-1 gene:MLOC_33978 transcript:MLOC_33978.4

0

622

0

152

16.8889

1

5'     TCGGACCAGGCTTCATTCC          3'
       o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTTGGTAAAC 5'

1079

Hordeum vulgare

CTTCCGTCCCAAAATAAGTGA

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_75925.3 cdna:known chromosome:030312v2:3HL:6935342:6940187:1 gene:MLOC_75925 transcript:MLOC_75925.3

2

1790

0.02

15

3.75

3

5'     CTTCCGTCCCAAAATAAGTGA        3'
         ||||||||||||||||||
3' TGAAACAGGCAGGGTTTTATTCACAGAGTTGA 5'

1081

Hordeum vulgare

TATTATGGGACGGAGGGAGTA

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_59910.2 cdna:known chromosome:030312v2:2:74913503:74919764:-1 gene:MLOC_59910 transcript:MLOC_59910.2

2

216

0

19

2.11111

1

5'     TATTATGGGACGGAGGGAGTA        3'
       |||| ||||||||||||||||
3' GTCAATAAAACCCTGCCTCCCTCATATACTAT 5'

1083

Hordeum vulgare

TTTTGGGACAGAGGAAGTACT

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_5651.2 cdna:known chromosome:030312v2:4:87404865:87410843:-1 gene:MLOC_5651 transcript:MLOC_5651.2

2

2107

0.05

15

7.5

3

5'     TTTTGGGACAGAGGAAGTACT        3'
       ||| || |||||||||||||
3' CAATAAATCCATGTCTCCTTCATGTGGATATC 5'

1085

Hordeum vulgare

TGTACTCCCTCCGTTCCTAAA

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_9522.1 cdna:novel chromosome:030312v2:1:124351345:124353037:1 gene:MLOC_9522 transcript:MLOC_9522.1

2

711

0.02

15

3.5

5'     TGTACTCCCTCCGTTCC-TAAA       3'
         ||||||||||||o|| ||||
3' TCTATGATGAGGGAGGCAGGGTATTTTCAGGG 5'

1087

Hordeum vulgare

TTTTGGGACGGAGGGAGTAAC

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_53015.2 cdna:known chromosome:030312v2:7HS:6327789:6334296:1 gene:MLOC_53015 transcript:MLOC_53015.2

2

1675

0

4

2

1

5'     TTTTGGGACGGAGGGAGTAAC        3'
       ||||||||||||||||||| |
3' GAATAAAACCCTGCCTCCCTCAT-GTTTTATG 5'

1089

Hordeum vulgare

GCATAGCATCATGAGCAATCA

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_70472.3 cdna:novel chromosome:030312v2:1:454920596:454923672:1 gene:MLOC_70472 transcript:MLOC_70472.3

0

771

0.03

15

5

4

5'     GCATAGCATCATGAGCAATCA        3'
       | |||o|||||| |o|| |||
3' TAACCATATTGTAGTAGTTGT-AGTCACTTAA 5'

1091

Hordeum vulgare

TTTGGATTGAAGGGAGCTCTG

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_74051.5 cdna:novel chromosome:030312v2:7:510581541:510584593:-1 gene:MLOC_74051 transcript:MLOC_74051.5

0

1694

0

22

5.5

3

5'     TTTGGATTGAAGGGAGCTCTG        3'
        ||||| ||||||||o|||o|
3' CGTATAACCTTACTTCCCTTGAGGCAAAATTA 5'

1093

Hordeum vulgare

AGTACTTCCTCCGTCCCAAAA

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_61642.2 cdna:known chromosome:030312v2:7:555938286:555947384:1 gene:MLOC_61642 transcript:MLOC_61642.2

2

1446

0

9

1.5

5'     AGTACTTCCTCCGTCCCAAAA        3'
       | ||||o||||||||||||||
3' ACAAT-ATGAGGGAGGCAGGGTTTTATTCACA 5'

1095

Hordeum vulgare

TATTATGGGACGGAGGGAGTA

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_52861.1 cdna:novel chromosome:030312v2:3HS:9317676:9318444:-1 gene:MLOC_52861 transcript:MLOC_52861.1

2

663

0.05

7

3.5

5'     TATTATGGGACGGAGGGAGTA        3'
       |||||o||o| |||o| ||||
3' AATAATAATGCCTTACCTTC-TCATCCAATTA 5'

1097

Hordeum vulgare

TGATTGAGCCGTGCCAATAT

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_16514.1 cdna:novel chromosome:030312v2:7:2773139:2774808:1 gene:MLOC_16514 transcript:MLOC_16514.1

2

38

0

30

0.5

5'     TGATTGAGCCGTGCCAATAT         3'
       |||||||||||o||||||||
3' GGCCACTAACTCGGCGCGGTTATAGAGCGCGC 5'

1099

Hordeum vulgare

TATTATGGGACGGAGGGAGTA

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_69582.1 cdna:novel chromosome:030312v2:2HS:406041:407531:1 gene:MLOC_69582 transcript:MLOC_69582.1

2

1379

0

7

1

5'     TATTATGGGACGGAGGGAGTA        3'
       |||| ||||||||||||||||
3' GTTAATAAAACCCTGCCTCCCTCATATTGTAT 5'

1101

Hordeum vulgare

TATGGGACGGAGGGAGTATCT

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_69582.1 cdna:novel chromosome:030312v2:2HS:406041:407531:1 gene:MLOC_69582 transcript:MLOC_69582.1

2

1376

0.02

2

3

5'     TATGGGACGGAGGGAGTATCT        3'
       | |||||||||||||||||
3' AATAAAACCCTGCCTCCCTCATATTGTATCCC 5'

1103

Hordeum vulgare

CTCCGTTCCTAAATATAAGTA

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_51860.3 cdna:novel chromosome:030312v2:3:12123027:12128342:-1 gene:MLOC_51860 transcript:MLOC_51860.3

2

3235

0

6

2

2.5

5'     CTCCGTTCCTAAATATAAGTA        3'
       |||||||||| ||||o| |||
3' GAGGGAGGCAAGGAATTATGT-CATATTCTGG 5'

1105

Hordeum vulgare

TATTATGGGACGGAGGGAGTA

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_6897.4 cdna:known chromosome:030312v2:7:547221774:547225949:1 gene:MLOC_6897 transcript:MLOC_6897.4

0

1243

0

271

135.5

2

5'     TATTATGGGACGGAGGGAGTA        3'
       |||||||| |||||||| |||
3' GTATATAATACCGTGCCTCCCCCATCAATGTT 5'

1107

Hordeum vulgare

TATTATGGGACGGAGGGAGTA

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_1236.6 cdna:novel chromosome:030312v2:7:588501118:588502025:1 gene:MLOC_1236 transcript:MLOC_1236.6

2

396

0.04

8

2.66667

3

5'    TATTA-TGGGACGGAGGGAGTA        3'
      o|||| |||o| ||||||||||
3' GATGTAATAACCTTACCTCCCTCATGGTTTTA 5'

1109

Hordeum vulgare

TTTTGGGACGGAGTGAGTATT

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_69582.1 cdna:novel chromosome:030312v2:2HS:406041:407531:1 gene:MLOC_69582 transcript:MLOC_69582.1

2

1377

0.01

3

2

5'     TTTTGGGACGGAGTGAGTATT        3'
       ||||||||||||| ||||||
3' TAATAAAACCCTGCCTCCCTCATATTGTATCC 5'

1111

Hordeum vulgare

TTTTGGAACGGAGGGAGTATC

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_26643.4 cdna:novel chromosome:030312v2:4:90497913:90501180:1 gene:MLOC_26643 transcript:MLOC_26643.4

2

981

0.05

13

1.85714

3.5

5'     TTTTGGAACGGAGGGAGTATC        3'
       |||o|| ||||||o|||||o
3' CATAAAAGCC-TGCCTCTCTCATGAGAGAATA 5'

1113

Hordeum vulgare

TATTATGGGACGGAGGGAGTA

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_72849.6 cdna:known chromosome:030312v2:5:32062940:32069184:-1 gene:MLOC_72849 transcript:MLOC_72849.6

2

870

0.01

8

1.6

2

5'     TATTATGGGACGGAGGGAGTA        3'
       |||| |||||||||||||| |
3' GTGAATAAAACCCTGCCTCCCTCCTATACTGT 5'

1115

Hordeum vulgare

AAGCCAAGGATGAGTTGCCTG

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_24655.1 cdna:novel chromosome:030312v2:5HL:34097857:34099120:1 gene:MLOC_24655 transcript:MLOC_24655.1

2

740

0.01

46

2.5

5'     AAGCCAAGGATGAGTTGCCTG        3'
        |||||||o|||| |||||||
3' TCATCTCGGTTCTTACTAAACGGACGTCCGTT 5'

1117

Hordeum vulgare

TATTATGGGACGGAGGGAGTA

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_34478.1 cdna:novel chromosome:030312v2:5:333694744:333703755:1 gene:MLOC_34478 transcript:MLOC_34478.1

2

855

0

19

2.11111

1

5'     TATTATGGGACGGAGGGAGTA        3'
       |||| ||||||||||||||||
3' GTCAATAAAACCCTGCCTCCCTCATCAAACAT 5'

1119

Hordeum vulgare

GTACTTCCTTCGTCCCAAAAT

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_17792.1 cdna:known chromosome:030312v2:5:394483785:394486837:-1 gene:MLOC_17792 transcript:MLOC_17792.1

2

658

0.03

7

3.5

5'    GTACTTCCT-TCGTCCCAAAAT        3'
      o|||||||| || || ||||||
3' CGTTATGAAGGACAGGAGCGTTTTAGTAAGCG 5'

1121

Hordeum vulgare

TTTTGGGACGGAGGGAGTAAC

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_61904.2 cdna:novel chromosome:030312v2:2HL:3:12085:1 gene:MLOC_61904 transcript:MLOC_61904.2

2

4904

0

5

2.5

1.5

5'     TTTTGGGACGGAGGGAGTAAC        3'
       ||||||o|||||||||||| |
3' TGATAAAACCTTGCCTCCCTCAT-GTTCGTCT 5'

1123

Hordeum vulgare

TATTATGGGACGGAGGGAGTA

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_79070.1 cdna:novel chromosome:030312v2:4:299437015:299441733:-1 gene:MLOC_79070 transcript:MLOC_79070.1

2

1910

0

4

2

5'     TATTATGGGACGGAGGGAGTA        3'
       |||| ||||| ||||||||||
3' GTAAATAAAACCCTACCTCCCTCATCATCGAA 5'

1125

Hordeum vulgare

TGCAGTTGCTGCCTCAAGCTT

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_73623.1 cdna:known chromosome:030312v2:7:575064402:575067960:-1 gene:MLOC_73623 transcript:MLOC_73623.1

2

1119

0.05

15

7.5

2.5

5'     TGCAGTTGCTGCCTCAAGCTT        3'
       ||||| |||||||||| ||o|
3' TAGAACGTCTACGACGGAGT-CGGAGTGTTAG 5'

1127

Hordeum vulgare

TGCAGTTGTTGCCTCATGCTT

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_73623.2 cdna:novel chromosome:030312v2:7:575064570:575067750:-1 gene:MLOC_73623 transcript:MLOC_73623.2

0

909

0

15

7.5

3

5'     TGCAGTTGTTGCCTCATGCTT        3'
       ||||| ||o||||||| ||o|
3' TAGAACGTCTACGACGGAGT-CGGAGTGTTAG 5'

1129

Hordeum vulgare

TTTTGGGACGGAGTGAGTATT

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_61904.6 cdna:novel chromosome:030312v2:2HL:6048:12085:1 gene:MLOC_61904 transcript:MLOC_61904.6

2

4807

0.02

5

2.5

3

5'     TTTTGGGACGGAGTGAGTATT        3'
       ||||||o|||||| |||||o
3' TGATAAAACCTTGCCTCCCTCATGTTCGTCTG 5'

1131

Hordeum vulgare

GTATTTACTCCCTCCGTTCTA

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_55064.1 cdna:known chromosome:030312v2:4:539278540:539280461:1 gene:MLOC_55064 transcript:MLOC_55064.1

2

555

0.02

15

3

5'     GTATTTACTCCCTCCGTTCTA        3'
         ||o||||||||||||||o|
3' CAAGATTAGATGAGGGAGGCAAGGTTTTATTC 5'

1133

Hordeum vulgare

GTATTCCCTCCGTCCCAAATA

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_7480.1 cdna:novel chromosome:030312v2:1H:5846411:5849197:1 gene:MLOC_7480 transcript:MLOC_7480.1

2

2410

0

8

4

2

5'     GTATTCCCTCCGTCCCAAATA        3'
       o|||||||||||o|||||| |
3' TATGTATAAGGGAGGCGGGGTTT-TATTCAAT 5'

1135

Hordeum vulgare

TTTGGATTGAAGGGAGCTCTG

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_71332.1 cdna:novel chromosome:030312v2:3:466323274:466326190:-1 gene:MLOC_71332 transcript:MLOC_71332.1

2

869

0.02

185

92.5

2.5

5'     TTTGGATTGAAGGGAGCTCTG        3'
       o||||| ||||||||||||oo
3' CATAGAACCTCACTTCCCTCGAGGTAGAAGTT 5'

1137

Hordeum vulgare

TCCACAGGCTTTCTTGAACTG

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_75225.1 cdna:novel chromosome:030312v2:3HL:14015810:14018279:-1 gene:MLOC_75225 transcript:MLOC_75225.1

0

768

0

127

3.5

5'     TCCACAGGCTTTCTTGAACTG        3'
       ||||||o|||| ||||| ||
3' GAGGAGGTGTTCGAA-GAACTCGAGTGGTTAG 5'

1139

Hordeum vulgare

CGCAGCTGTAGTCGCCGGCGT

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_65066.1 cdna:novel chromosome:030312v2:2:233087046:233088708:-1 gene:MLOC_65066 transcript:MLOC_65066.1

2

414

0.04

8

2.66667

3

5'     CGCAGCTGTAGTCGCCGGCGT        3'
       || |||o||||||||||o||
3' CCCAGCTTCGGCATCAGCGGCTGCTCGCACGG 5'

1141

Hordeum vulgare

TTTGGATTGAAGGGAGCTCTG

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_4149.5 cdna:novel chromosome:030312v2:7:96045517:96047783:-1 gene:MLOC_4149 transcript:MLOC_4149.5

0

788

0

9

1.8

3.5

5'     TTTGGATTGAAGGGAGCTCTG        3'
       |||| |o|o||||||o|| ||
3' TAAGAAACGTGATTTCCCTTGA-ACGAAGCAT 5'

1143

Hordeum vulgare

TGCAGTTGTTGCCTCATGCTT

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_16182.1 cdna:novel chromosome:030312v2:7HL:17469123:17471345:-1 gene:MLOC_16182 transcript:MLOC_16182.1

2

1441

0.01

20

2.5

5'     TGCAGTTGTTGCCTCATGCTT        3'
       |||||o||o||||||| |||o
3' GTATACGTCGACGACGGAGTTCGAGAGTGAGG 5'

1145

Hordeum vulgare

TATGGGACGGAGGGAGTATCT

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_72495.1 cdna:known chromosome:030312v2:3:542235938:542240994:1 gene:MLOC_72495 transcript:MLOC_72495.1

2

1797

0.01

10

2.5

5'     TATGGGACGGAGGGAGTATCT        3'
       | |o|||||||||||||| ||
3' AATAAAATCCTGCCTCCCTCAT-GATGCTTTC 5'

1147

Hordeum vulgare

TTTTGGGACGGAGGGAGTACA

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_59824.3 cdna:novel chromosome:030312v2:5:295978958:295982464:-1 gene:MLOC_59824 transcript:MLOC_59824.3

2

815

0

4

2

1

5'     TTTTGGGACGGAGGGAGTACA        3'
       ||||||||||||||||||| |
3' GAATAAAACCCTGCCTCCCTCAT-TCATTTTT 5'

1149

Hordeum vulgare

TATTATGGGACGGAGGGAGTA

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_52585.1 cdna:novel chromosome:030312v2:4:311693944:311697760:1 gene:MLOC_52585 transcript:MLOC_52585.1

2

1388

0

5

1.5

5'     TATTATGGGACGGAGGGAGTA        3'
       | |||||||||||||||||o|
3' GAATACAATACCCTGCCTCCCTCGTTTACGTC 5'

1151

Hordeum vulgare

CTCCGTTCCTAAATATAAGTT

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_51860.2 cdna:novel chromosome:030312v2:3:12123027:12128342:-1 gene:MLOC_51860 transcript:MLOC_51860.2

2

3495

0.05

6

2

3.5

5'     CTCCGTTCCTAAATATAAGTT        3'
       |||||||||| ||||o| ||
3' GAGGGAGGCAAGGAATTATGT-CATATTCTGG 5'

1153

Hordeum vulgare

TATTATGGGACGGAGGGAGTA

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_37946.5 cdna:novel chromosome:030312v2:5:188989229:188992900:1 gene:MLOC_37946 transcript:MLOC_37946.5

2

191

0

19

2.11111

1.5

5'     TATTATGGGACGGAGGGAGTA        3'
       |||| ||||||o|||||||||
3' GTCAATAAAACCCTGTCTCCCTCATAAACAGA 5'

1155

Hordeum vulgare

CGCAGCTGTAGTCGCCGGCGT

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_68363.1 cdna:novel chromosome:030312v2:3:1893140:1895279:-1 gene:MLOC_68363 transcript:MLOC_68363.1

2

546

0.04

3

1

3

5'     CGCAGCTGTAGTCGCCGGCGT        3'
       ||||||o| || ||||||||o
3' CGGGGCGTCGGCCTCCGCGGCCGCGGCCGCGG 5'

1157

Hordeum vulgare

CTGACAGAAGAGAGTGAGCAC

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_52321.4 cdna:novel chromosome:030312v2:3:518753505:518756746:-1 gene:MLOC_52321 transcript:MLOC_52321.4

2

637

0

4

1

5'     CTGACAGAAGAGAGTGAGCAC        3'
       |||||||||||||| ||||||
3' AACAGACTGTCTTCTCTCTCTCGTGTCAACAC 5'

1159

Hordeum vulgare

TATACTCCCTCCGTCCGAAAT

alignment

plot

GSE38755_PARE-unique.norm.1-5_DPA

MLOC_63462.1 cdna:novel chromosome:030312v2:2:53816820:53821954:1 gene:MLOC_63462 transcript:MLOC_63462.1

2

1796

0.03

10

5

3.5

5'     TATACTCCCTCCGTCCGAAAT        3'
       | ||||||||||o||| |||
3' TAATAGATGAGGGAGGTAGGGTTTTATTCACA 5'

1161

Malus domestica

GGAATCTTGATGATGCTGCA

alignment

plot

GSM880656_apple_deg_proc

MDP0000130802

0

1300

0

4

2

0.5

5'     GGAATCTTGATGATGCTGCA         3'
       ||||||o|||||||||||||
3' CTACCCTTAGGACTACTACGACGTTATCTTTT 5'

1164

Malus domestica

GGAATCTTGATGATGCTGCA

alignment

plot

GSM880656_apple_deg_proc

MDP0000285955

0

1300

0

43

21.5

0.5

5'     GGAATCTTGATGATGCTGCA         3'
       ||||||o|||||||||||||
3' CTACCCTTAGGACTACTACGACGTTACCTTAT 5'

1167

Malus domestica

TCATCATCATCATCATCATCA

alignment

plot

GSM880656_apple_deg_proc

MDP0000294303

0

89

0

6

2

1

5'     TCATCATCATCATCATCAT-CA       3'
       ||||||||||||||||||| ||
3' TAGTAGTAGTAGTAGTAGTAGTACGTAAGAAG 5'

1169

Malus domestica

GCTCTCTATGCTTCTGTCATC

alignment

plot

GSM880656_apple_deg_proc

MDP0000742828

1

440

0.03

7

3.5

4

5'     GCTCTCTATGCTTCTGTCATC        3'
       ||||| | |||o||||o|||
3' TTTTCGAGATAAACGGAGACGGTAAGATACTC 5'

1171

Malus domestica

GTGCCTGTCTCCCTGTATGCC

alignment

plot

GSM880656_apple_deg_proc

MDP0000900893

2

30

0.03

5

3.5

5'     GTGCCTGTCTCCCTGTATGCC        3'
       |||||||| | ||||| |o||
3' AGCCCACGGACA-AAGGACAGATGGCAATATG 5'

1175

Malus domestica

GGAATCTTGATGATGCTGCA

alignment

plot

GSM880656_apple_deg_proc

MDP0000200319

0

1273

0

5

0.5

5'     GGAATCTTGATGATGCTGCA         3'
       ||||||o|||||||||||||
3' CTCCCCTTAGGACTACTACGACGTCGTCTCTT 5'

1177

Malus domestica

GCTCTCTATGCTTCTGTCATC

alignment

plot

GSM880656_apple_deg_proc

MDP0000224116

2

1391

0.04

9

3

5'     GCTCTCTATGCTTCTGTCATC        3'
       ||o|| ||||||o|| |||||
3' TCTACGGGATATACGAGGA-AGTAGCATGTTC 5'

1179

Medicago truncatula

TTTATTCTCAGTTTGTTGCTC

alignment

plot

GSM643817_GDN-4

gi|8745860|gb|BE202597.1|BE202597 EST402619 KV1 Medicago truncatula cDNA clone pKV1-2A24, mRNA sequence

1

517

0.02

4

0.571429

3

5'     TTTATTCTCAGTTTGTTGCTC        3'
       ||||o|||||o| |||| |||
3' AGGTAAATGAGAGTTATACAA-GAGAGCGTTG 5'

1181

Medicago truncatula

TCGATAAACCTCTGCATCCA

alignment

plot

GSM643817_GDN-4

gi|11895969|gb|BF631811.1|BF631811 NF008E10DT1F1072 Drought Medicago truncatula cDNA clone NF008E10DT 5', mRNA sequence

2

19

0.03

2

1

2.5

5'     TCGATAAACCTCTGCATCCA         3'
       ||o|||||||||| |||||
3' GAGAAGTTATTTGGAGA-GTAGGAAACAAAGA 5'

1183

Medicago truncatula

TCTTCTTCTTCTTCTTGCACC

alignment

plot

GSM643817_GDN-4

gi|11965315|gb|BE248055.2|BE248055 NF001A03DT1F1017 Drought Medicago truncatula cDNA clone NF001A03DT 5', mRNA sequence

2

19

0.01

2

0.0869565

2

5'     TCTTCTTCTTCTTCTTGCACC        3'
       ||||||||||||||||| | |
3' GTAGAGAAGAAGAAGAAGAAC-TAGATTCCTT 5'

1185

Medicago truncatula

TGGAGAAGCAGGGCACGTGCA

alignment

plot

GSM643817_GDN-4

gi|209563603|gb|GE344778.1|GE344778 MEUAG72TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence

2

184

0.05

5

0.238095

3.5

5'     TGGAGAAGCAGGGCACGTGCA        3'
       |o||||| ||o|||||o|||
3' CAAAATCTCTT-GTTCCGTGTACGACTGTTGT 5'

1187

Medicago truncatula

GGGCTTCTCTTTCTTGGCAGG

alignment

plot

GSM643817_GDN-4

gi|11958943|gb|BE316474.2|BE316474 NF035G01LF1F1004 Developing leaf Medicago truncatula cDNA clone NF035G01LF 5', mRNA sequence

1

328

0

2

0.181818

3

5'     GGGCTTCTCTTTCTTGGCAGG        3'
       oo||||||||||||||| ||
3' GAAGTTCGAAGAGAAAGAACCATCGTAGACCA 5'

1189

Medicago truncatula

CGTCTTCATCATCATCACATT

alignment

plot

GSM643817_GDN-4

gi|157979521|gb|EX527793.1|EX527793 MTGland_A033_2007-06-18/MTGlandA033_C04_014_1 Medicago truncatula A17 glandular trichome Med

1

638

0.05

63

0.347713

3

5'     CGTCTTCATCATCATCA-CATT       3'
       |o|| |||||||||||| |||o
3' AGTAGTAGTAGTAGTAGTAGTAGTAGTAATAA 5'

1191

Medicago truncatula

TTACCTATTCCACCAATTCCAT

alignment

plot

GSM643817_GDN-4

gi|157983461|gb|EX531733.1|EX531733 MTGland_B027_2007-05-25/MTGlandB027_E09_036_1 Medicago truncatula A17 glandular trichome Med

0

68

0.03

497

4

5'     TTACCTATTCCACCAATTCCAT       3'
       ||||| ||||| || ||||||
3' CCGAAATGGTTAAGGAGGGTAAGGTTGTAATG 5'

1193

Medicago truncatula

ATTATTGTCAACGTGACTAG

alignment

plot

GSM643817_GDN-4

gi|83665229|gb|DW015637.1|DW015637 EST1224598 MTY Medicago truncatula cDNA clone MTYA782, mRNA sequence

2

652

0.03

2

2.5

5'     ATTATTGTCAACGTGACTAG         3'
       ||| |||o||||o|o|||||
3' TCTCTAA-AACGGTTGTATTGATCGTATCTAT 5'

1195

Medicago truncatula

TAAGACATCAGCTATAAGCTA

alignment

plot

GSM643817_GDN-4

gi|27522998|gb|CA990104.1|CA990104 EST643612 GESD Medicago truncatula cDNA clone GESD-27F23, mRNA sequence

2

253

0.05

3

0.428571

3

5'     TAAGACATCAGCTATAAGCTA        3'
       |||| ||o|| ||||||||o|
3' ACAGATTCGGTGGT-GATATTCGGTCTTGTTG 5'

1197

Medicago truncatula

ATATAGCATCGTGAGCAATCA

alignment

plot

GSM643817_GDN-4

gi|9679875|gb|AL380123.1|AL380123 MtBB50E12R1 MtBB Medicago truncatula cDNA clone MtBB50E12 T7, mRNA sequence

2

377

0.03

3

0.428571

2.5

5'     ATATAGCATCGTGAGCAATCA        3'
       |||o|||||| |||||||| |
3' TCAATATGTCGTAG-ACTCGTTATTGTTACCG 5'

1199

Medicago truncatula

ATATAGCATCGTGAGCAATCA

alignment

plot

GSM643817_GDN-4

gi|89245650|gb|DY617437.1|DY617437 AC3425 NOLLY Medicago truncatula cDNA 5', mRNA sequence

2

769

0.02

3

0.428571

2.5

5'     ATATAGCATCGTGAGCAATCA        3'
       |||o|||||| |||||||| |
3' TCAATATGTCGTAG-ACTCGTTATTGGTTACC 5'

1201

Medicago truncatula

TGATACACTAGCACGGATCAC

alignment

plot

GSM643817_GDN-4

gi|57567314|gb|CX540289.1|CX540289 s13dNF68C08GS065_463852 Germinating Seed Medicago truncatula cDNA, mRNA sequence

0

207

0

14

0.7

3.5

5'     TGATACACTAGCACGGATCAC        3'
       ||||||||o||| |o| o|||
3' TGGAACTATGTGGTCG-GTCGGGTGTACAGCA 5'

1203

Medicago truncatula

TTTATTCTCAGTTTGTTGCTC

alignment

plot

GSM643817_GDN-4

gi|57566747|gb|CX539722.1|CX539722 s13dNF67D06GS046_462714 Germinating Seed Medicago truncatula cDNA, mRNA sequence

0

155

0.04

4

0.363636

3.5

5'    TTTATTC-TCAGTTTGTTGCTC        3'
      |||||o| ||| |||| |||||
3' TAGAAATAGGAAGTGAAACCACGAGGTGAAGT 5'

1205

Medicago truncatula

TTGGACTGAAGGGAGCTCCC

alignment

plot

GSM643817_GDN-4

gi|14877734|gb|BI270282.1|BI270282 NF008H08FL1F1076 Developing flower Medicago truncatula cDNA clone NF008H08FL 5', mRNA sequenc

0

610

0.01

10

2.5

3

5'     TTGGACTGAAGGGAGCTCCC         3'
       |||||||||||||  | |||
3' ACTTAACCTGACTTCCCAGG-GGGATAATATT 5'

1207

Medicago truncatula

TTAATCTAGGAAATTACACTCG

alignment

plot

GSM643817_GDN-4

gi|57493540|gb|CX524821.1|CX524821 s13dNF11D10AT090_478276 Aphid-Infected Shoots Medicago truncatula cDNA, mRNA sequence

0

200

0.05

42

21

4

5'     TTAATCTAGGAAATTACACTCG       3'
       |||||| ||||||||||  | |
3' GATTAATTAGTTCCTTTAATGCCA-CTATCTA 5'

1209

Medicago truncatula

TTCCACAGCTTTCTTGAACTT

alignment

plot

GSM643817_GDN-4

gi|151386367|gb|EV256245.1|EV256245 MTYCU62TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence

0

305

0.05

14

7

3.5

5'    TTCCACA-GCTTTCTTGAACTT        3'
      |||| || ||||||o||||||
3' AAGAAGGCGTACGAAAGGACTTGACAAAAGAA 5'

1211

Medicago truncatula

TTGAGCCGTGCCAATATCACG

alignment

plot

GSM643817_GDN-4

gi|33106441|gb|CF069782.1|CF069782 EST670503 MTUS Medicago truncatula cDNA clone MTUS-24C6, mRNA sequence

0

92

0

308

154

2.5

5'     TTGAGCCGTGCCAATATCACG        3'
       ||||||||o||||||||| |
3' CACTAACTCGGCGCGGTTATAGGGAACGCGAA 5'

1213

Medicago truncatula

TGATTGAGTCGTGCCAATATC

alignment

plot

GSM643817_GDN-4

gi|33106441|gb|CF069782.1|CF069782 EST670503 MTUS Medicago truncatula cDNA clone MTUS-24C6, mRNA sequence

2

95

0

4

2

1

5'     TGATTGAGTCGTGCCAATATC        3'
       ||||||||o||o|||||||||
3' GACCACTAACTCGGCGCGGTTATAGGGAACGC 5'

1215

Medicago truncatula

TGGAGAAGCAGGGCACGTGCA

alignment

plot

GSM643817_GDN-4

gi|20293470|gb|BQ156411.1|BQ156411 NF092E09IR1F1071 Irradiated Medicago truncatula cDNA clone NF092E09IR 5', mRNA sequence

2

124

0.01

5

0.238095

2.5

5'     TGGAGAAGCAGGGCACGTGCA        3'
       |o||||| ||o|||||o||||
3' CAAAATCTCTT-GTTCCGTGTACGTCTATCGT 5'

1217

Medicago truncatula

TGCCTGGCTCCCTGTATGCCA

alignment

plot

GSM643817_GDN-4

gi|14883236|gb|BI273231.1|BI273231 NF097C02FL1F1017 Developing flower Medicago truncatula cDNA clone NF097C02FL 5', mRNA sequenc

0

41

0

188

0.5

5'     TGCCTGGCTCCCTGTATGCCA        3'
       ||||||||||||||o||||||
3' TAGTACGGACCGAGGGACGTACGGTCGTCCTT 5'

1219

Medicago truncatula

TCCAAAGGGATCGCATTGATC

alignment

plot

GSM643817_GDN-4

gi|151388508|gb|EV258379.1|EV258379 MTYDJ65TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence

0

650

0

17

8.5

1

5'     TCCAAAGGGATCGCATTGATC        3'
       |||||||||||||||||| ||
3' CTGTAGGTTTCCCTAGCGTAAC-AGAGGTTGA 5'

1221

Medicago truncatula

AACTTAAATATGTTTTCAGTCC

alignment

plot

GSM643817_GDN-4

gi|11906327|gb|BF642169.1|BF642169 NF017C04IN1F1034 Insect herbivory Medicago truncatula cDNA clone NF017C04IN 5', mRNA sequence

2

304

0.01

4

0.333333

2.5

5'     AACTTAAATATGTTTTCAGTCC       3'
       |||| |||o|| ||||||||||
3' ATATTTGACTTTGTAAAAAAGTCAGGATCCTA 5'

1223

Medicago truncatula

TTACCTATTCCACCAATTCCAT

alignment

plot

GSM643817_GDN-4

gi|9685795|gb|AL386044.1|AL386044 MtBC32C04F1 MtBC Medicago truncatula cDNA clone MtBC32C04 T3, mRNA sequence

0

13

0.01

135

1.73193

3

5'     TTACCTATTCCACCAATTCCAT       3'
       oo||||| |||||||||o|||o
3' TAGTGGTGGATCAGGTGGTTAGGGTG       5'

1225

Medicago truncatula

TCAAGATGCTTGGGTTTTGGA

alignment

plot

GSM643817_GDN-4

gi|151387296|gb|EV257167.1|EV257167 MTYD529TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence

0

404

0.01

2

4

5'     TCAAGATGCTTGGGTTTTGGA        3'
       || ||| |||||| oo|||||
3' CCAGAGATCTTCGAACCAGGAACCTTATGAAA 5'

1227

Medicago truncatula

TGTTATTTCATCGATTTTGTTG

alignment

plot

GSM643817_GDN-4

gi|161109822|gb|EY478525.1|EY478525 METBF24TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence

1

764

0.04

8

1

4

5'     TGTTATTTCATCGATTTTGTTG       3'
       | |o| ||||||o||||oo|||
3' AGTTAAAGT-AAGTAGTTAAAGTAACGAAGTT 5'

1229

Medicago truncatula

ATTTGGGACGGAGGGAGTAAT

alignment

plot

GSM643817_GDN-4

gi|157979068|gb|EX527340.1|EX527340 MTGland_A027_2007-06-13/MTGlandA027_E06_020_1 Medicago truncatula A17 glandular trichome Med

2

139

0

2

0.5

1

5'     ATTTGGGACGGAGGGAGTAAT        3'
       ||||||||||||||||||| |
3' ATGTTAAACCCTGCCTCCCTCAT-ATTATATA 5'

1231

Medicago truncatula

CGTCTTCATCATCATCACATT

alignment

plot

GSM643817_GDN-4

gi|157982941|gb|EX531213.1|EX531213 MTGland_B020_2007-05-15/MTGlandB020__G12_042_1 Medicago truncatula A17 glandular trichome Me

1

52

0.02

2

2.5

5'     CGTCTTCATCATCATCACATT        3'
        || ||||||||||o||||||
3' GTCGCCA-AAGTAGTAGTGGTGTAAGCGATAA 5'

1233

Medicago truncatula

AGATTGAGACTTGTATGGCTT

alignment

plot

GSM643817_GDN-4

gi|14881697|gb|BI272404.1|BI272404 NF024H12FL1F1103 Developing flower Medicago truncatula cDNA clone NF024H12FL 5', mRNA sequenc

2

132

0.04

5

0.714286

3

5'     AGATTGAGACTTGTATGGCTT        3'
       |||| || |||||||||| ||
3' CACCTCTACCTATGAACATACCAAAAAATCCA 5'

1235

Medicago truncatula

TGATAGTGTCAACTAGTACAG

alignment

plot

GSM643817_GDN-4

gi|157982243|gb|EX530515.1|EX530515 MTGland_A068_2007-06-27/MTGlandA068_A07_032_1 Medicago truncatula A17 glandular trichome Med

0

663

0

23

0.5

5'     TGATAGTGTCAACTAGTACAG        3'
       |||||||||||||||o|||||
3' ATAAACTATCACAGTTGATTATGTCTTTTAAA 5'

1237

Medicago truncatula

ATATAGCATCGTGAGCAATCA

alignment

plot

GSM643817_GDN-4

gi|57486979|gb|CX518453.1|CX518453 s13dNF32B09VI077_423739 Virus-Infected Leaves Medicago truncatula cDNA, mRNA sequence

2

526

0.03

3

0.428571

2.5

5'     ATATAGCATCGTGAGCAATCA        3'
       |||o|||||| |||||||| |
3' TCAATATGTCGTAG-ACTCGTTATTGTTACCG 5'

1239

Medicago truncatula

TGAGCCAGGATGGCTTGCCGG

alignment

plot

GSM643817_GDN-4

gi|9056606|gb|BE240422.1|BE240422 EST404471 MHRP- Medicago truncatula cDNA clone pMHRP-45I5, mRNA sequence

0

26

0

31

3.5

5'    TGAGCC-AGGATGGCTTGCCGG        3'
      |||||| ||||||o |||||oo
3' GCAACTCGGTTCCTACTAAACGGTTTCATTAC 5'

1241

Medicago truncatula

TGACAGAAGAGAGTGAGCAC

alignment

plot

GSM643817_GDN-4

gi|209566340|gb|GE347410.1|GE347410 MEUB696TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence

2

170

0.01

2

1

2

5'     TGACAGAAGAGAGTGAGCAC         3'
       |||||||||| || ||||||
3' CACAACTGTCTTCTATCTCTCGTGTTGGGCTC 5'

1243

Medicago truncatula

ATACTCCCTCCGTCTCAAATT

alignment

plot

GSM643817_GDN-4

gi|27404054|gb|CA917124.1|CA917124 EST641271 GPOD Medicago truncatula cDNA clone GPOD-35O19, mRNA sequence

2

296

0.01

2

2.5

5'     ATACTCCCTCCGTCTCAAATT        3'
       ||||| |||| o|||||||||
3' TAGGTATGA-GGAGTTAGAGTTTAACAAGGCA 5'

1245

Medicago truncatula

TGCCAAAGGAGATTTGCCCTG

alignment

plot

GSM643817_GDN-4

gi|20281110|gb|BQ144051.1|BQ144051 NF028G06DT1F1049 Drought Medicago truncatula cDNA clone NF028G06DT 5', mRNA sequence

2

167

0

6

1.5

5'     TGCCAAAGGAGATTTGCCCTG        3'
       ||||||||||||||||||| o
3' ATTTACGGTTTCCTCTAAACGGGTTGTCCTGT 5'

1247

Medicago truncatula

TGTTATTTCATCGATTTTGTTG

alignment

plot

GSM643817_GDN-4

gi|151386640|gb|EV256518.1|EV256518 MTYCX85TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence

1

62

0.01

2

3.5

5'     TGTTATTTCATCGATTTTGTTG       3'
       |||| ||o||||| |||||||
3' AACAACAAGAAGGTAGCAAAAACAAACTAAGA 5'

1249

Medicago truncatula

TTGGACTGAAGGGAGCTCCC

alignment

plot

GSM643817_GDN-4

gi|83664945|gb|DW015353.1|DW015353 EST1224314 MTY Medicago truncatula cDNA clone MTYA406, mRNA sequence

0

565

0

9

3

5'     TTGGACTGAAGGGAGCTCCC         3'
       o|||||||||||| | o|||
3' CATTGACCTGACTTCCC-CAGGGGAGACTCAT 5'

1251

Medicago truncatula

CGTCTTCATCATCATCACATT

alignment

plot

GSM643817_GDN-4

gi|14879629|gb|BI271284.1|BI271284 NF014D03FL1F1029 Developing flower Medicago truncatula cDNA clone NF014D03FL 5', mRNA sequenc

1

56

0.05

63

0.347713

3

5'     CGTCTTCATCATCATCA-CATT       3'
       |o|| |||||||||||| |||o
3' AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAG 5'

1253

Medicago truncatula

TTACCGATTCCACCCATTCCTA

alignment

plot

GSM643817_GDN-4

gi|14879902|gb|BI271414.1|BI271414 NF050F09FL1F1079 Developing flower Medicago truncatula cDNA clone NF050F09FL 5', mRNA sequenc

0

176

0

25

3

5'     TTACCGATTCCACCCATTCCTA       3'
       || ||o||||||||||| ||o|
3' GATAAAAGGTTAAGGTGGGTACGGGTTTCCGT 5'

1255

Medicago truncatula

TACAATTCCTTAGGTGCTTTT

alignment

plot

GSM643817_GDN-4

gi|209561715|gb|GE346021.1|GE346021 MEUAU81TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence

0

604

0.03

3

0.75

4

5'     TACAATTCCTTAGGTGCTTTT        3'
       | ||||||||o| || ||o||
3' CCGAAAGTTAAGGAGTACA-GAGAAGGAACAC 5'

1257

Medicago truncatula

TGCCAAAGGAGAGTTGCCC

alignment

plot

GSM643817_GDN-4

gi|13779528|gb|BG644416.1|BG644416 EST506035 KV3 Medicago truncatula cDNA clone pKV3-37A6 5' end, mRNA sequence

0

156

0

35

1.5

5'     TGCCAAAGGAGAGTTGCCC          3'
       ||||||||o||| ||||||
3' GACTACGGTTTCTTCTAAACGGGCGGTCCTAT 5'

1259

Medicago truncatula

ATTTGGGACGGAGGGAGTAAT

alignment

plot

GSM643817_GDN-4

gi|157980308|gb|EX528580.1|EX528580 MTGland_A043_2007-05-31/MTGlandA043_E06_020_1 Medicago truncatula A17 glandular trichome Med

0

672

0

2

0.5

1

5'     ATTTGGGACGGAGGGAGTAAT        3'
       ||||||||||||||||||| |
3' ATGTTAAACCCTGCCTCCCTCAT-ATTCACTT 5'

1261

Medicago truncatula

TTCCACAGCTTTCTTGAACTT

alignment

plot

GSM643817_GDN-4

gi|27233382|gb|CA859018.1|CA859018 EST636273 GLSD Medicago truncatula cDNA clone pGLSD-39B20, mRNA sequence

0

225

0.02

814

3

5'    TTCCACA-GCTTTCTTGAACTT        3'
      ||||||| ||||||||||||
3' TCTAAGGTGTCCGAAAGAACTTGCCATTGCTG 5'

1263

Medicago truncatula

TTGAGCCGTGCCAATATCACG

alignment

plot

GSM643817_GDN-4

gi|20455996|gb|BQ255243.1|BQ255243 MTNAE61TKM KVKC Medicago truncatula cDNA clone pKVKC-5F1, mRNA sequence

0

519

0

357

2.5

5'     TTGAGCCGTGCCAATATCACG        3'
       ||||||||o||||||||| |
3' CACTAACTCGGCGCGGTTATAGGGAACGCGCA 5'

1265

Medicago truncatula

TGATACACTAGCACGGATCAC

alignment

plot

GSM643817_GDN-4

gi|27404253|gb|CA917323.1|CA917323 EST641470 GPOD Medicago truncatula cDNA clone GPOD-35F18, mRNA sequence

0

721

0

14

0.7

3.5

5'     TGATACACTAGCACGGATCAC        3'
       ||||||||o||| |o| o|||
3' TGGAACTATGTGGTCG-GTCGGGTGTACAGCA 5'

1267

Medicago truncatula

TCCAAAGGGATCGCATTGTTT

alignment

plot

GSM643817_GDN-4

gi|11609208|gb|BF520525.1|BF520525 EST457996 DSIL Medicago truncatula cDNA clone pDSIL-24I14, mRNA sequence

2

397

0

3

0.375

0

5'     TCCAAAGGGATCGCATTGTTT        3'
       |||||||||||||||||||||
3' CTGTAGGTTTCCCTAGCGTAACAAAGTATGAA 5'

1269

Medicago truncatula

AGTTTTCCTCGGTAGTTAACT

alignment

plot

GSM643817_GDN-4

gi|11930806|gb|BE320886.2|BE320886 NF028A05RT1F1033 Developing root Medicago truncatula cDNA clone NF028A05RT 5', mRNA sequence

0

127

0

5

1.25

3.5

5'     AGTTTTCCTCGGTAGTTAACT        3'
       ||o|o| |||o|o||o|||||
3' TAACTCGAGA-GAGTCGTCGATTGAACAGAAG 5'

1271

Medicago truncatula

TCGATAAACCTCTGCATCCA

alignment

plot

GSM643817_GDN-4

gi|260520284|gb|GT136120.1|GT136120 METBK06TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence

1

393

0

2

1

2.5

5'     TCGATAAACCTCTGCATCCA         3'
       ||o|||||||||| |||||
3' GAGAAGTTATTTGGAGA-GTAGGAAACAAAGA 5'

1273

Medicago truncatula

TTCCACAGCTTTCTTGAACTT

alignment

plot

GSM643817_GDN-4

gi|20176305|gb|BQ124343.1|BQ124343 EST609919 GLSD Medicago truncatula cDNA clone pGLSD-35E7, mRNA sequence

0

77

0

12

6

3

5'    TTCCAC-AGCTTTCTTGAACTT        3'
      |||||| |||||||||||||
3' ACAAAGGTGTTCGAAAGAACTTGCTAAAGCTG 5'

1275

Medicago truncatula

TGGAGAAGCAGGGCACATGCT

alignment

plot

GSM643817_GDN-4

gi|13370135|gb|BG451341.1|BG451341 NF107D04DT1F1032 Drought Medicago truncatula cDNA clone NF107D04DT 5', mRNA sequence

2

495

0

5

0.238095

2

5'     TGGAGAAGCAGGGCACATGCT        3'
       |o||||| ||o||||||||||
3' CAAAATCTCTT-GTTCCGTGTACGACNGTTGT 5'

1277

Medicago truncatula

TTACCTATTCCACCAATTCCAT

alignment

plot

GSM643817_GDN-4

gi|11935465|gb|AW696680.2|AW696680 NF109F07ST1F1062 Developing stem Medicago truncatula cDNA clone NF109F07ST 5', mRNA sequence

2

123

0.01

2

3

5'     TTACCTATTCCACCAATTCCAT       3'
       || ||||||||||| ||o|||o
3' ACAGAAGGGATAAGGTGGGTAGGGTGTTTAAG 5'

1279

Medicago truncatula

CCTCTTCCTCTTCCTCTTCCAC

alignment

plot

GSM643817_GDN-4

gi|13606813|gb|BG588673.1|BG588673 EST490482 MHRP- Medicago truncatula cDNA clone pMHRP-57M15, mRNA sequence

2

349

0.04

5

0.192308

2.5

5'     CCTCTTCCTCTTCCTCTTCCAC       3'
       | || |||||o|||||||||||
3' ATGAGCAGTAGGAGGAGGAGAAGGTGGACGGT 5'

1281

Medicago truncatula

TGGAGAAGCAGGGCACGTGCA

alignment

plot

GSM643817_GDN-4

gi|13371358|gb|BG452564.1|BG452564 NF078F03LF1F1028 Developing leaf Medicago truncatula cDNA clone NF078F03LF 5', mRNA sequence

1

355

0

3

1

4

5'     TGGAGAAGCAGGGCACGTGCA        3'
       |||||||||||   | |||||
3' GTTCACCTCTTCGTCAGTT-CACGTTTGTCAT 5'

1283

Medicago truncatula

CGTCTTCATCATCATCACATT

alignment

plot

GSM643817_GDN-4

gi|13368671|gb|BG449889.1|BG449889 NF071H03IN1F1031 Insect herbivory Medicago truncatula cDNA clone NF071H03IN 5', mRNA sequence

0

533

0.02

3

5'     CGTCTTCATCATCATCA-CATT       3'
       | ||o|||||||||||| |||o
3' AGAAGGAGGAGTAGTAGTAGTCGTAGCAGAAG 5'

1285

Medicago truncatula

TACAATTCCTTAGGTGCTTTT

alignment

plot

GSM643817_GDN-4

gi|14878965|gb|BI270917.1|BI270917 NF055F08FL1F1075 Developing flower Medicago truncatula cDNA clone NF055F08FL 5', mRNA sequenc

1

513

0

2

1

3.5

5'     TACAATTCCTTAGGTGCTTTT        3'
       || |||| || ||o|||||||
3' CAAAATCTTAATGA-TCTACGAAAACTAGGAA 5'

1287

Medicago truncatula

TTTGGATTGAAGGGAGCTC

alignment

plot

GSM643817_GDN-4

gi|11906925|gb|BF642767.1|BF642767 NF072B01IN1F1011 Insect herbivory Medicago truncatula cDNA clone NF072B01IN 5', mRNA sequence

0

84

0

8

4

1.5

5'     TTTGGATTGAAGGGAGCTC          3'
       ||||||||||||o||| ||
3' CAACAAACCTAACTTCTCTC-AGAAATACACT 5'

1289

Medicago truncatula

AGCTTGGGCTAGGAATTTGTGC

alignment

plot

GSM643817_GDN-4

gi|260519199|gb|GT137748.1|GT137748 METC218TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence

0

28

0.01

18

3.6

3.5

5'     AGCTTGGGCTAGGAATTTGTGC       3'
       |||||||||| |o||||o o||
3' AGGATCGAACCCGACCTTTAAGGGCGGTGAAA 5'

1291

Medicago truncatula

AGAGTTAATTAAGTTTTTAGT

alignment

plot

GSM643817_GDN-4

gi|9668011|gb|AL368258.1|AL368258 MtBA23C03R1 MtBA Medicago truncatula cDNA clone MtBA23C03 T7, mRNA sequence

2

171

0.03

2

1

2.5

5'     AGAGTTAATTAAGTTTTTAGT        3'
       || ||||||||||oo|o||||
3' TTTGTCACAATTAATTCGGAGATCACGGTTTA 5'

1293

Medicago truncatula

ATTTGGGACGGAGGGAGTATT

alignment

plot

GSM643817_GDN-4

gi|157980539|gb|EX528811.1|EX528811 MTGland_A046_2007-06-01/MTGlandA046__D01_005_1 Medicago truncatula A17 glandular trichome Me

2

521

0

2

0.5

2

5'     ATTTGGGACGGAGGGAGTATT        3'
       |||||||||||||||||||
3' ATGTTAAACCCTGCCTCCCTCATTCTCCCCAC 5'

1295

Medicago truncatula

CCTCGTTCCATACATCATCTAG

alignment

plot

GSM643817_GDN-4

gi|57503415|gb|CX534696.1|CX534696 s13dNF49D10MJ090_331089 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago trunc

0

222

0

5

2

5'     CCTCGTTCCATACATCATCTAG       3'
       || |o|||||o|||||||||||
3' GTAAGG-GTAAGGTGTGTAGTAGATCTTGTTC 5'

1297

Medicago truncatula

TGCCTGGCTCCCTGTATGCCA

alignment

plot

GSM643817_GDN-4

gi|148765690|gb|ES612384.1|ES612384 MTGland_A019_2007-05-07/MTGlandA019_F01_003_1 Medicago truncatula A17 glandular trichome Med

0

344

0

49

0.5

5'     TGCCTGGCTCCCTGTATGCCA        3'
       ||||||||||||||o||||||
3' TCGTACGGACCGAGGGACGTACGGTCGTCCTC 5'

1299

Medicago truncatula

TTCCACAGCTTTCTTGAACTT

alignment

plot

GSM643817_GDN-4

gi|10704748|gb|BF004473.1|BF004473 EST432971 KV1 Medicago truncatula cDNA clone pKV1-17B18, mRNA sequence

0

358

0.01

1243

3

5'    TTCCACA-GCTTTCTTGAACTT        3'
      ||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCCAAAAAAG 5'

1301

Medicago truncatula

ATTTGGGACGGAGGGAGTATT

alignment

plot

GSM643817_GDN-4

gi|148765165|gb|ES611859.1|ES611859 MTGland_A012__2007-05-05/MTGlandA012__H01_001_1 Medicago truncatula A17 glandular trichome M

0

316

0

2

0.666667

1

5'     ATTTGGGACGGAGGGAGTATT        3'
       ||||||||||||||||||| |
3' ATGTTAAACCCTGCCTCCCTCATTATGTATTC 5'

1303

Medicago truncatula

CCTCGTTCCATACATCATCTAG

alignment

plot

GSM643817_GDN-4

gi|57503277|gb|CX534558.1|CX534558 s13dNF47H03MJ032_330823 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago trunc

0

491

0

30

3

5'     CCTCGTTCCATACATCATCTAG       3'
       | ||o|||||||| |||||||o
3' GCTAGTAGTAAGGTATGCAGTAGATTGTGCTG 5'

1305

Medicago truncatula

TCAATGTGTTGTGTTTGTCTC

alignment

plot

GSM643817_GDN-4

gi|11958274|gb|AW695035.2|AW695035 NF082G11ST1F1087 Developing stem Medicago truncatula cDNA clone NF082G11ST 5', mRNA sequence

0

44

0.02

3

5'     TCAATGTGTTGTGTTTGTCTC        3'
       || |||| ||||||||||| |
3' GCAAAGATACA-AACACAAACAGTGACACTCA 5'

1307

Medicago truncatula

TTGAAGGGGCAGGGAGAGGAG

alignment

plot

GSM643817_GDN-4

gi|260519406|gb|GT137955.1|GT137955 METC440TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence

0

543

0.02

4

0.458333

3.5

5'     TTGAAGGGGCAGGGAGAGGAG        3'
       ||||| |o|||||o|o||| |
3' ATTCAACTTGCTCGTCCTTTTCCACGTCCCTT 5'

1309

Medicago truncatula

TCGGACCAGGCTTCATTCC

alignment

plot

GSM643817_GDN-4

gi|11935327|gb|BE325087.2|BE325087 NF120A06ST1F1040 Developing stem Medicago truncatula cDNA clone NF120A06ST 5', mRNA sequence

2

455

0

6

1.5

5'     TCGGACCAGGCTT-CATTCC         3'
       o|||||||||||| ||||||
3' CTTAGGCCTGGTCCGAAAGTAAGGTCCGTAAA 5'

1311

Medicago truncatula

TAAGACATCAGCTATAAGCTA

alignment

plot

GSM643817_GDN-4

gi|7718765|gb|AW774848.1|AW774848 EST333999 KV3 Medicago truncatula cDNA clone pKV3-24I21, mRNA sequence

1

249

0.01

2

3.5

5'     TAAGACATCA-GCTATAAGCTA       3'
       o|| |||||| ||| |||||||
3' TACCGTTATGTAGTACGAAATTCGATACTTTA 5'

1313

Medicago truncatula

TTACCGATTCCACCCATTCCTA

alignment

plot

GSM643817_GDN-4

gi|83665171|gb|DW015579.1|DW015579 EST1224540 MTY Medicago truncatula cDNA clone MTYA712, mRNA sequence

0

411

0

96

48

4

5'     TTACCGATTCCACCCATTCCTA       3'
       o| ||o||||||||||o| |o|
3' AATTGA-GGTTAAGGTGGGTGAAGGTTGTGAC 5'

1315

Medicago truncatula

TTGGATTGAAGGGAGCTCT

alignment

plot

GSM643817_GDN-4

gi|260520362|gb|GT136198.1|GT136198 METBK88TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence

0

694

0.01

10

2.5

3

5'     TTGGATTGAAGGGAGCTCT          3'
       |||||o|||||||  |o||
3' ACTTAACCTGACTTCCCAGGGGATAATATTGG 5'

1317

Medicago truncatula

TTACCTATTCCACCAATTCCAT

alignment

plot

GSM643817_GDN-4

gi|209561029|gb|GE343715.1|GE343715 MEUA443TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence

0

357

0

135

1.73193

3

5'     TTACCTATTCCACCAATTCCAT       3'
       oo||||| |||||||||o|||o
3' TAGTGGTGGATCAGGTGGTTAGGGTGGACTAG 5'

1319

Medicago truncatula

ATTTGGGACGGAGGGAGTATT

alignment

plot

GSM643817_GDN-4

gi|57487645|gb|CX519119.1|CX519119 s13dNF49D08VI074_439458 Virus-Infected Leaves Medicago truncatula cDNA, mRNA sequence

2

93

0.05

2

1

3.5

5'     ATTTGGGACGGAGGGAGTATT        3'
       ||||| | ||||o|||oo|||
3' GTCTTAAACACAGCCTTCCTTGTAATAATGGA 5'

1321

Medicago truncatula

TTAATCTAGGAAATTACACTCG

alignment

plot

GSM643817_GDN-4

gi|8529017|gb|BE124460.1|BE124460 EST393495 GVN Medicago truncatula cDNA clone pGVN-59P9, mRNA sequence

0

109

0

27

3.5

5'     TTAATCTAGGAAATTACACTCG       3'
       |||||| |||||||o||| | |
3' ACTAAATTAGTTCCTTTAGTGTCAACCATTAT 5'

1323

Medicago truncatula

TTACCTATTCCACCAATTCCAT

alignment

plot

GSM643817_GDN-4

gi|14866334|gb|BI264259.1|BI264259 NF110C09PL1F1070 Phosphate starved leaf Medicago truncatula cDNA clone NF110C09PL 5', mRNA se

0

602

0

3

2.5

5'     TTACCTATTCCACCAATTCCAT       3'
       || ||||||||||||||o|| |
3' ACAAAAGGGATAAGGTGGTTAGGGCATCTAGG 5'

1325

Medicago truncatula

TTAATCTAGGAAAATACGGTG

alignment

plot

GSM643817_GDN-4

gi|20274358|gb|BQ138232.1|BQ138232 NF001B02PH1F1015 Phoma-infected Medicago truncatula cDNA clone NF001B02PH 5', mRNA sequence

0

170

0.01

10

3.5

5'     TTAATCTAGGAAAATACGGTG        3'
       |||||| |||||| o|||||
3' GATTAATTAGTTCCTTTAGTGCCAACTTGTGT 5'

1327

Medicago truncatula

TTTGGGATCAGAAATTAGAGA

alignment

plot

GSM643817_GDN-4

gi|9669808|gb|AL370055.1|AL370055 MtBA35C02R1 MtBA Medicago truncatula cDNA clone MtBA35C02 T7, mRNA sequence

1

27

0.03

4

2

4

5'     TTTGGGATCAGAAATTAGAGA        3'
       |||||||||| ||| o|o| |
3' ATTAAAACCCTAGTATTTCGTTT-TGAATAAA 5'

1329

Medicago truncatula

ATGTGACCTTGTATATGATC

alignment

plot

GSM643817_GDN-4

gi|6465779|gb|AW191278.1|AW191278 T113573e KV2 Medicago truncatula cDNA clone pKV2-2J13, mRNA sequence

2

229

0.02

2

2.5

5'     ATGTGACCTTGTATATGATC         3'
       |o|||| ||| |||||||||
3' TGACTGCACTTGAA-ATATACTAGGTCGATGA 5'

1331

Medicago truncatula

TCTTCTTCTTCTTCTTGCACC

alignment

plot

GSM643817_GDN-4

gi|260520513|gb|GT136349.1|GT136349 METBM56TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence

2

56

0.05

15

0.0215569

2

5'     TCTTCTTCTTCTTCTTGCACC        3'
       |||||||||||||||| || |
3' AAGAAGAAGAAGAAGAAGAA-GTCGTTTCTTG 5'

1333

Medicago truncatula

CCTGTAATCCCAGCACTTTGG

alignment

plot

GSM643817_GDN-4

gi|6708718|gb|AW299041.1|AW299041 EST305715 KV2 Medicago truncatula cDNA clone KV2-11I14, mRNA sequence

1

595

0.01

4

0.666667

4

5'     CCTGTAATCCCAGCACTTTGG        3'
       ||| |||| |||||||||  |
3' ACCAGGAAATTA-GGTCGTGAACACCGGAACA 5'

1335

Medicago truncatula

TAATCTGCATCCTGAGGTTTA

alignment

plot

GSM643817_GDN-4

gi|13779607|gb|BG644495.1|BG644495 EST506114 KV3 Medicago truncatula cDNA clone pKV3-37O12 5' end, mRNA sequence

0

502

0

10

2.5

5'     TAATCTGCATCCTGAGGTTTA        3'
       |||||||||||||| ||||o
3' TTGTATTAGACGTAGGACGCCAAGAACTGGAC 5'

1337

Medicago truncatula

TGGAGAAGCAGGGCACATGCT

alignment

plot

GSM643817_GDN-4

gi|7674738|gb|AW126098.2|AW126098 N100295e rootphos(-) Medicago truncatula cDNA clone MHRP-4C5, mRNA sequence

2

29

0

5

0.238095

2

5'     TGGAGAAGCAGGGCACATGCT        3'
       |o||||| ||o||||||||||
3' CAAAATCTCTT-GTTCCGTGTACGACTGTTGT 5'

1339

Medicago truncatula

TTCCACAGCTTTCTTGAACTG

alignment

plot

GSM643817_GDN-4

gi|27523320|gb|CA990426.1|CA990426 EST643934 GESD Medicago truncatula cDNA clone GESD-28L1, mRNA sequence

0

537

0.05

15

1.36364

3.5

5'     TTCCACAGCTTTCTTGAACTG        3'
       | ||||||||||||| | |o|
3' ATCGACGGTGTCGAAAGAAGT-GGCCTCGAAA 5'

1341

Medicago truncatula

TTGCTTGGTGCTGGTCGGGAA

alignment

plot

GSM643817_GDN-4

gi|11960861|gb|BE315730.2|BE315730 NF025F05LF1F1043 Developing leaf Medicago truncatula cDNA clone NF025F05LF 5', mRNA sequence

0

312

0

41

13.6667

4

5'     TTGCTTGGTGCTGGTCGGGAA        3'
       ||||||||||| | |||||
3' CCCCAACGAACCACGTCGAGCCCCATACTCCC 5'

1343

Medicago truncatula

CCTCTTCCTCTTCCTCTTCCAC

alignment

plot

GSM643817_GDN-4

gi|57497759|gb|CX529040.1|CX529040 s13dNF40B06MJ046_244140 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago trunc

0

38

0.05

3

0.214286

4

5'     CCTCTTCCTCTTCCTCTTCCAC       3'
       | ||||| |||||||||| | |
3' AGAAGAAGAAGAAGAAGGAGAACGAGAAAGCT 5'

1345

Medicago truncatula

GGAATCTTGATGATTCTGCAC

alignment

plot

GSM643817_GDN-4

gi|9056759|gb|BE240575.1|BE240575 EST404624 MHRP- Medicago truncatula cDNA clone pMHRP-45L2, mRNA sequence

0

245

0

26

6.5

2.5

5'     GGAATCTTGATGATTCTGCAC        3'
       ||||||o||||||| |||||
3' CCACCCTTAGGACTACTACGACGTCGTCGTCA 5'

1347

Medicago truncatula

TTGACAGAAGATAGAGGGCAC

alignment

plot

GSM643817_GDN-4

gi|83668422|gb|DW018830.1|DW018830 EST1227791 MTY Medicago truncatula cDNA clone MTYBB44, mRNA sequence

0

610

0

4

1.5

5'     TTGACAGAAGATAGAGGGCAC        3'
       ||||||||||||||||o|||
3' TTCTAACTGTCTTCTATCTCTCGTAACCAGAT 5'

1349

Medicago truncatula

TTACCGATTCCACCCATTCCTA

alignment

plot

GSM643817_GDN-4

gi|14879467|gb|BI271199.1|BI271199 NF050F01FL1F1015 Developing flower Medicago truncatula cDNA clone NF050F01FL 5', mRNA sequenc

0

99

0

1087

2

5'     TTACCGATTCCACCCATTCCTA       3'
       ||||||| ||||||||| ||||
3' ACAAAATGGCTTAGGTGGGTACGGATTCCTAC 5'

1351

Physcomitrella patens

TGCACTGCCTCTTCCCTGGCT

alignment

plot

GSM410805-5251

PP1S40_48V6.6 cdna:known scaffold:ASM242v1:DS544929.1:397418:401180:-1 gene:PP1S40_48V6 transcript:PP1S40_48V6.6

0

1991

0

507

84.5

3

5'     TGCACTGCCTCTTCCCTGGCT        3'
       |||| ||||||||||| | ||
3' GTGTACGTAACGGAGAAGGGTC-GAGTGTGGC 5'

1353

Physcomitrella patens

TCTTAGATCTACAATGCCTCT

alignment

plot

GSM410805-5251

PP1S70_252V6.1 cdna:known scaffold:ASM242v1:DS544959.1:1546625:1548213:-1 gene:PP1S70_252V6 transcript:PP1S70_252V6.1

2

928

0.01

2

2.5

5'     TCTTAGATCTACAATGCCTCT        3'
       | |o||||||||||| |||||
3' TGTGATAGTCTAGATGTTAGGGAGAGACCGTG 5'

1355

Physcomitrella patens

TTCTTGCACTCCTCCATCTCT

alignment

plot

GSM410805-5251

PP1S188_39V6.1 cdna:known scaffold:ASM242v1:DS545077.1:420675:421969:-1 gene:PP1S188_39V6 transcript:PP1S188_39V6.1

0

588

0

109641

1.5

5'     TTCTTGCACTCCTCCATCTCT        3'
       |||||||||||||| |||||o
3' CCAGAAGAACGTGAGGAGTTAGAGGGAGTCCT 5'

1357

Physcomitrella patens

ACACTCTCTCCATTTCTCTGC

alignment

plot

GSM410805-5251

PP1S159_13V6.1 cdna:known scaffold:ASM242v1:DS545048.1:86215:89324:1 gene:PP1S159_13V6 transcript:PP1S159_13V6.1

0

2472

0.01

404

3.5

5'     ACACTCTCTCCATTTCTCTGC        3'
        ||||||||||||||||| o
3' GTTAAGTGAGAGAGGTAAAGAGTTTGACTTAC 5'

1359

Physcomitrella patens

TCAATGCTCTCTGGAGCTTCT

alignment

plot

GSM410805-5251

PP1S18_318V6.1 cdna:known scaffold:ASM242v1:DS544907.1:2489598:2492020:-1 gene:PP1S18_318V6 transcript:PP1S18_318V6.1

0

1802

0.01

4

3.5

5'     TCAATGCTCTCTGGAGCTTCT        3'
       |||||||||||||o|| |  |
3' AGAGAGTTACGAGAGACTTC-ATTAGGTTGGT 5'

1361

Physcomitrella patens

CGTCTTCCTCTTCCTCTTCCT

alignment

plot

GSM410805-5251

PP1S44_263V6.3 cdna:known scaffold:ASM242v1:DS544933.1:1674521:1678736:-1 gene:PP1S44_263V6 transcript:PP1S44_263V6.3

1

32

0.05

2

4

5'     CGTCTTCCTCTTCCTCTTCCT        3'
       |||| |||||o|| | o||||
3' GGTAGCAGTAGGAGGAGCACGAGGAGGAGGAG 5'

1363

Physcomitrella patens

CTTGGACTGAAGGGAGCTCC

alignment

plot

GSM410805-5251

PP1S332_22V6.1 cdna:known scaffold:ASM242v1:DS545220.1:67340:71481:1 gene:PP1S332_22V6 transcript:PP1S332_22V6.1

1

937

0.02

2

4

5'     CTTGGACTGAAGGGAGCTCC         3'
       ||| || |||||||| |||
3' GGGAGAAACTTACTTCCCT-GAGAAAGTCGGT 5'

1365

Physcomitrella patens

TGCACTGCCTCTTCCCTGGCT

alignment

plot

GSM410805-5251

PP1S77_277V6.1 cdna:known scaffold:ASM242v1:DS544966.1:1461739:1463836:-1 gene:PP1S77_277V6 transcript:PP1S77_277V6.1

2

258

0

5

2

5'     TGCACTGCCTCTTCCCTGGCT        3'
       o|||||||||||||||||| o
3' GGTAGCGTGACGGAGAAGGGACCCGGTAAACA 5'

1367

Physcomitrella patens

TGGCCCATGCACAGTATCTACG

alignment

plot

GSM410805-5251

PP1S77_113V6.1 cdna:novel scaffold:ASM242v1:DS544966.1:455191:464493:1 gene:PP1S77_113V6 transcript:PP1S77_113V6.1

2

1683

0.01

3

2.5

5'     TGGCCCATGCACAGTATCTACG       3'
       ||||||||||||||||o|o| o
3' GTAGACCGGGTACGTGTCATGGGTATAGATGA 5'

1369

Physcomitrella patens

TGCATGACCGTCTCTTCCTGC

alignment

plot

GSM410805-5251

PP1S20_21V6.1 cdna:known scaffold:ASM242v1:DS544909.1:98904:101764:1 gene:PP1S20_21V6 transcript:PP1S20_21V6.1

0

1903

0

793

396.5

3.5

5'     TGCATGACCGTCTCTTCCTGC        3'
        ||||||| |||| |o|||||
3' CTGTTCGTACTGTCAGAAAGGGACGAAGTTCA 5'

1371

Physcomitrella patens

CGTCTTCCTCTTCCTCTTCCT

alignment

plot

GSM410805-5251

PP1S163_90V6.1 cdna:known scaffold:ASM242v1:DS545052.1:680865:682493:1 gene:PP1S163_90V6 transcript:PP1S163_90V6.1

1

40

0.02

16

2.5

5'     CGTCTTCCTCTTCCTCTTCCT        3'
       ||o|o|||||o|||||o|||o
3' CGCGGCGGGAGGAGGAGGAGGAGGGGAGGGGA 5'

1373

Physcomitrella patens

TGATGGTGATGCGCTTGTATC

alignment

plot

GSM410805-5251

PP1S4_301V6.1 cdna:known scaffold:ASM242v1:DS544893.1:2000250:2000630:-1 gene:PP1S4_301V6 transcript:PP1S4_301V6.1

0

223

0

361

180.5

2

5'     TGATGGTGATGCGCTTGTA-TC       3'
       ||||||||||||| ||||| ||
3' AGTCACTACCACTACGCAAACATTAGGGTCTC 5'

1375

Physcomitrella patens

TTGGACTGAAGGGAGCTCCAC

alignment

plot

GSM410805-5251

PP1S135_34V6.1 cdna:known scaffold:ASM242v1:DS545024.1:271940:277802:1 gene:PP1S135_34V6 transcript:PP1S135_34V6.1

2

3508

0.04

2

3

5'     TTGGACTGAAGGGAGCTCCAC        3'
       ||||| |||| | ||||||||
3' ATTTAACCTCACTTGCATCGAGGTGTCTGCTG 5'

1377

Physcomitrella patens

TGCCTGGCTCCTTGTATGCCA

alignment

plot

GSM410805-5251

PP1S339_47V6.1 cdna:known scaffold:ASM242v1:DS545227.1:275729:278989:-1 gene:PP1S339_47V6 transcript:PP1S339_47V6.1

2

1472

0

2

1

2

5'     TGCCTGGCTCCTTGTATGCCA        3'
       |||||||||||o||o|||||
3' TAGTACGGACCGAGGGACGTACGGACGTCTCC 5'

1379

Physcomitrella patens

TCTCCCTCAAAGGCTTCCA

alignment

plot

GSM410805-5251

PP1S248_7V6.1 cdna:known scaffold:ASM242v1:DS545137.1:70918:75836:-1 gene:PP1S248_7V6 transcript:PP1S248_7V6.1

0

3728

0

20

10

3

5'     TCTCCCTCAAAGGCTTCCA          3'
        ||||||||||||| |||
3' TCGTTGAGGGAGTTTCCGTAGGAAGTGAAGCC 5'

1381

Physcomitrella patens

ACACTCTCTCCATTTCTCTGC

alignment

plot

GSM410805-5251

PP1S49_283V6.1 cdna:known scaffold:ASM242v1:DS544938.1:2081089:2083512:1 gene:PP1S49_283V6 transcript:PP1S49_283V6.1

2

534

0.05

2

0.666667

2.5

5'     ACACTCTCTCCATTTCTCTGC        3'
        |||||||||||o|||||| |
3' CACAAGTGAGAGAGGTGAAGAGA-GCGACAAT 5'

1383

Physcomitrella patens

TGACCACCTTGATTCCGGCCT

alignment

plot

GSM410805-5251

PP1S233_24V6.1 cdna:known scaffold:ASM242v1:DS545122.1:105627:110001:-1 gene:PP1S233_24V6 transcript:PP1S233_24V6.1

0

3088

0

4

5'     TGACCACCTTGATTCCGGCCT        3'
        |||||||||||||  |o||o
3' CACCCCTGGTGGAACTAAAACTGGGTTGGAAG 5'

1385

Physcomitrella patens

TCTCCCTCAAAGGCTTCCA

alignment

plot

GSM410805-5251

PP1S112_154V6.1 cdna:known scaffold:ASM242v1:DS545001.1:733541:736966:1 gene:PP1S112_154V6 transcript:PP1S112_154V6.1

2

1828

0.02

2

5'     TCTCCCTCAAAGGCTTCCA          3'
       |||||||||||||| |||
3' TGTTAGAGGGAGTTTCCGTAGGGGTAGGGCGT 5'

1387

Physcomitrella patens

GAGCTCAGGAGGGATAGCGCC

alignment

plot

GSM410805-5251

PP1S91_47V6.1 cdna:novel scaffold:ASM242v1:DS544980.1:275335:275565:-1 gene:PP1S91_47V6 transcript:PP1S91_47V6.1

0

30

0

6

3.5

5'     GAGCTCAGGAGGGATAGCGCC        3'
        |||||||||o|| ||||| |
3' AGGAATCGAGTCCTTCCAATCGCAGTCATCGA 5'

1389

Physcomitrella patens

TTGCATGGAGTCTATGTCTGGA

alignment

plot

GSM410805-5251

PP1S118_209V6.2 cdna:known scaffold:ASM242v1:DS545007.1:1023491:1026970:-1 gene:PP1S118_209V6 transcript:PP1S118_209V6.2

0

1204

0

42874

21437

1.5

5'     TTGCATGGAGTCTATGTCTGGA       3'
       ||||||||||||||| ||||o|
3' TACAAACGTACCTCAGATA-AGACTTACACTA 5'

1391

Physcomitrella patens

TTGAGCCGCGCCAATATCACA

alignment

plot

GSM410805-5251

PP1S205_1V6.1 cdna:known scaffold:ASM242v1:DS545094.1:3903:6350:-1 gene:PP1S205_1V6 transcript:PP1S205_1V6.1

2

1394

0

14

2

5'     TTGAGCCGCGCCAATATCACA        3'
       |||||||||||||||||| |
3' GACTAACTCGGCGCGGTTATAGCGAAATCGGT 5'

1393

Physcomitrella patens

TGACAGAAGAGAGTGAGCAC

alignment

plot

GSM410805-5251

PP1S194_57V6.1 cdna:known scaffold:ASM242v1:DS545083.1:256580:259970:-1 gene:PP1S194_57V6 transcript:PP1S194_57V6.1

0

1741

0

205

102.5

1

5'     TGACAGAAGAGAGTGAGCAC         3'
       ||||||||||||| ||||||
3' CGCTACTGTCTTCTCTCTCTCGTGCCGGTCTC 5'

1395

Physcomitrella patens

TCCCAAATGTATACAAAGCC

alignment

plot

GSM410805-5251

PP1S54_155V6.1 cdna:known scaffold:ASM242v1:DS544943.1:981461:984271:1 gene:PP1S54_155V6 transcript:PP1S54_155V6.1

2

1068

0.05

2

1

2.5

5'     TCCCAAATGTATACAAAGCC         3'
       |||| ||||||o||||| ||
3' ATCAAGGGATTACATGTGTTTAGGTGGATGTT 5'

1397

Physcomitrella patens

TCTGGTTGGATTGTAGGCCTC

alignment

plot

GSM410805-5251

PP1S545_11V6.1 cdna:novel scaffold:ASM242v1:DS545413.1:53746:55931:-1 gene:PP1S545_11V6 transcript:PP1S545_11V6.1

0

1493

0.02

4

5'     TCTGGTTGGATTGTAGGCCTC        3'
       |||||| ||||o|||| ||o
3' GTTCAGACCACCCTAGCATC-GGGCAAACTCA 5'

1399

Physcomitrella patens

CATCTTGGAGTACTGCATCTT

alignment

plot

GSM410805-5251

PP1S93_114V6.1 cdna:known scaffold:ASM242v1:DS544982.1:1044093:1046509:1 gene:PP1S93_114V6 transcript:PP1S93_114V6.1

0

1850

0

306

3

5'     CATCTTGGAGTACTGCATCTT        3'
        ||||| |||||| |||||||
3' ACTACTAGAAGCTCATGCCGTAGAAAAAGTCT 5'

1401

Physcomitrella patens

CTGAAGGAGTTCATTGGTACA

alignment

plot

GSM410805-5251

PP1S38_312V6.1 cdna:known scaffold:ASM242v1:DS544927.1:1784879:1788350:-1 gene:PP1S38_312V6 transcript:PP1S38_312V6.1

2

1889

0.02

3

2.5

5'     CTGAAGGAGTTCATTGGTACA        3'
       |||||||||||||o|| | ||
3' ATCAGACTTCCTCAAGTGACGAAGTACTTTTC 5'

1403

Physcomitrella patens

CCACTCTCTCCGTTTCCCTTCC

alignment

plot

GSM410805-5251

PP1S180_108V6.1 cdna:known scaffold:ASM242v1:DS545069.1:700836:702986:-1 gene:PP1S180_108V6 transcript:PP1S180_108V6.1

1

1232

0.03

2

4

5'     CCACTCTCTCCGTTTCCCTTCC       3'
        |||o||||||o||||||| |
3' GGGTAGTGGGAGAGGTAAAGGGA-GACGTATG 5'

1405

Physcomitrella patens

TTATGATGTAGATTCTTCAT

alignment

plot

GSM410805-5251

PP1S4_166V6.1 cdna:known scaffold:ASM242v1:DS544893.1:1202417:1205054:1 gene:PP1S4_166V6 transcript:PP1S4_166V6.1

0

1365

0

1347

1

5'     TTATGATGTAGATTCTTCAT         3'
       ||||||||o||||||||||o
3' GCTTAATACTACGTCTAAGAAGTGTCGATGCT 5'

1407

Physcomitrella patens

TTGCGCGTGAATTTGAAGGCT

alignment

plot

GSM410805-5251

PP1S65_226V6.3 cdna:known scaffold:ASM242v1:DS544954.1:1265650:1269721:1 gene:PP1S65_226V6 transcript:PP1S65_226V6.3

0

1533

0

676

169

3

5'     TTGCGCGTGAATTTGAAGGCT        3'
       |||||||o||||| o||| ||
3' TGTTAACGCGCGCTTAATTTTCAGAAATCTCC 5'

1409

Physcomitrella patens

TATGTCCATTGCAGTTGCATAC

alignment

plot

GSM410805-5251

PP1S392_41V6.1 cdna:known scaffold:ASM242v1:DS545279.1:241557:245376:-1 gene:PP1S392_41V6 transcript:PP1S392_41V6.1

2

1326

0.01

2

3

5'     TATGTCCATTGCAGTTGCATAC       3'
       ||||o||||||||||||||o
3' CTTGATACGGGTAACGTCAACGTGGACTTCGA 5'

1411

Physcomitrella patens

ACACTCTCTCCATTTCTCTGC

alignment

plot

GSM410805-5251

PP1S13_145V6.1 cdna:known scaffold:ASM242v1:DS544902.1:1046333:1048755:1 gene:PP1S13_145V6 transcript:PP1S13_145V6.1

0

1833

0

30

2.5

5'     ACACTCTCTCCATTTCTC-TGC       3'
        ||||||||||||o|||| |||
3' GTGAAGTGAGAGAGGTAGAGAGTACGACTTGT 5'

1413

Physcomitrella patens

TCTCTCTCAACCAACCATAC

alignment

plot

GSM410805-5251

PP1S47_331V6.1 cdna:known scaffold:ASM242v1:DS544936.1:2112084:2114662:-1 gene:PP1S47_331V6 transcript:PP1S47_331V6.1

1

1982

0

2

2.5

5'     TCTCTCTCAACCAACCATAC         3'
       o|||||||||||||||||
3' TGAAGGAGAGAGTTGGTTGGTACCTGTGGGTG 5'

1415

Physcomitrella patens

TCTTAGATCTACAATGCCTCT

alignment

plot

GSM410805-5251

PP1S163_129V6.1 cdna:novel scaffold:ASM242v1:DS545052.1:922382:923413:-1 gene:PP1S163_129V6 transcript:PP1S163_129V6.1

1

219

0

2

5'     TCTTAGATCTACAATGCCTCT        3'
       |||||||||||||||||| |
3' GACAAGAATCTAGATGTTACGG-GCTTCTCCC 5'

1417

Physcomitrella patens

TCTCCCTCAAAGGCTTCCA

alignment

plot

GSM410805-5251

PP1S48_150V6.1 cdna:novel scaffold:ASM242v1:DS544937.1:1186304:1186936:-1 gene:PP1S48_150V6 transcript:PP1S48_150V6.1

0

166

0.01

3

5'     TCTCCCTCAAAGGCTTCCA          3'
       ||||||||||||  ||||
3' TAATAGAGGGAGTTTCGAAAGGCAGATGAACG 5'

1419

Physcomitrella patens

TGATGGTGATGCGCTTGTATC

alignment

plot

GSM410805-5251

PP1S4_308V6.1 cdna:known scaffold:ASM242v1:DS544893.1:2050723:2051636:1 gene:PP1S4_308V6 transcript:PP1S4_308V6.1

0

429

0

361

180.5

2

5'     TGATGGTGATGCGCTTGTA-TC       3'
       ||||||||||||| ||||| ||
3' AGTCACTACCACTACGCAAACATTAGGGTCTC 5'

1421

Physcomitrella patens

TGAATGATATTAACGTCCACG

alignment

plot

GSM410805-5251

PP1S144_8V6.1 cdna:known scaffold:ASM242v1:DS545033.1:55598:58669:-1 gene:PP1S144_8V6 transcript:PP1S144_8V6.1

0

2144

0

133

2.5

5'     TGAATGATATTAACGTCCACG        3'
       o||||||o||o|||||||||
3' GAATGCTTACTGTAGTTGCAGGTGGACTGTCG 5'

1423

Physcomitrella patens

TTGCTGTGCACTACTTAGTAC

alignment

plot

GSM410805-5251

PP1S66_193V6.2 cdna:novel scaffold:ASM242v1:DS544955.1:915118:917696:1 gene:PP1S66_193V6 transcript:PP1S66_193V6.2

0

873

0

132

66

3.5

5'     TTGCTGTGCACTACTTAGTAC        3'
       |||||||||||o| ||||  |
3' AACGAACGACACGTGGTTAATCCAGTAGTAGA 5'

1425

Physcomitrella patens

TTTCCTGCCTCTCACTAGCTT

alignment

plot

GSM410805-5251

PP1S134_4V6.1 cdna:known scaffold:ASM242v1:DS545023.1:15064:17235:1 gene:PP1S134_4V6 transcript:PP1S134_4V6.1

0

1674

0.04

12

4

5'     TTTCCTGCCTCTCACTAGCTT        3'
        |||||||||||  ||||||
3' TATGTAAGGACGGAGATGGATCGACGTCAATC 5'

1427

Physcomitrella patens

TGAATGATATTAACGTCCACG

alignment

plot

GSM410805-5251

PP1S308_11V6.1 cdna:known scaffold:ASM242v1:DS545197.1:269783:272152:-1 gene:PP1S308_11V6 transcript:PP1S308_11V6.1

2

2006

0.01

31

3

5'     TGAATGATATTAACGTCCACG        3'
       o||||||||||||||o|| |
3' AAGGGCTTACTATAATTGCGGGAGGCACGTAG 5'

1429

Physcomitrella patens

TCATGGTCGTGATCATGGTTG

alignment

plot

GSM410805-5251

PP1S31_130V6.1 cdna:novel scaffold:ASM242v1:DS544920.1:698981:703414:-1 gene:PP1S31_130V6 transcript:PP1S31_130V6.1

2

1167

0

12

1.5

5'     TCATGGTCGTGATCATGGTTG        3'
       ||||||||||| |||||||o|
3' CACCAGTACCAGCACCAGTACCAGCACTGACA 5'

1431

Physcomitrella patens

TTGCATGGAGTCTATGTCTGGA

alignment

plot

GSM410805-5251

PP1S78_222V6.1 cdna:known scaffold:ASM242v1:DS544967.1:1504432:1507501:1 gene:PP1S78_222V6 transcript:PP1S78_222V6.1

0

1458

0.01

182

3.5

5'     TTGCATGGAGTCTATGTCTGGA       3'
       |||||o||||||||||o|o |
3' TCCTAACGTGCCTCAGATACGGGACAAACTTC 5'

1433

Physcomitrella patens

TTGCGCGTGAATTTGAAGGCT

alignment

plot

GSM410805-5251

PP1S136_98V6.1 cdna:known scaffold:ASM242v1:DS545025.1:636928:639842:-1 gene:PP1S136_98V6 transcript:PP1S136_98V6.1

0

660

0

38

3.5

5'     TTGCGCGTGAATTTGAAGGCT        3'
       ||||||||||||||| ||o
3' ATTGAACGCGCACTTAAACCTCTCTGAGTTCG 5'

1435

Physcomitrella patens

TGACCACCTTGATTCCGGCCT

alignment

plot

GSM410805-5251

PP1S46_110V6.3 cdna:known scaffold:ASM242v1:DS544935.1:995497:1001219:-1 gene:PP1S46_110V6 transcript:PP1S46_110V6.3

2

2187

0.02

6

2

3

5'     TGACCACCTTGATTCCGGCCT        3'
       ||||| ||||||||||o|| o
3' TCGGACTGGAGGAACTAAGGTCGTGCAGGGCC 5'

1437

Physcomitrella patens

TGAATGATATTAACGTCCACG

alignment

plot

GSM410805-5251

PP1S131_153V6.1 cdna:known scaffold:ASM242v1:DS545020.1:781375:784642:1 gene:PP1S131_153V6 transcript:PP1S131_153V6.1

0

1316

0

447

223.5

2

5'     TGAATGATATTAACGTCCACG        3'
       ||||||||||| |||| ||||
3' TATTACTTACTATAACTGCAAGTGCAACTCTC 5'

1439

Physcomitrella patens

TGACAGAAGAGAGTGAGCAC

alignment

plot

GSM410805-5251

PP1S50_125V6.1 cdna:known scaffold:ASM242v1:DS544939.1:1240965:1243861:-1 gene:PP1S50_125V6 transcript:PP1S50_125V6.1

0

1566

0

205

102.5

1

5'     TGACAGAAGAGAGTGAGCAC         3'
       ||||||||||||| ||||||
3' CGCTACTGTCTTCTCTCTCTCGTGCTGGTCAC 5'

1441

Physcomitrella patens

CCTTCAACTTCATGCGTGCA

alignment

plot

GSM410805-5251

PP1S414_8V6.1 cdna:known scaffold:ASM242v1:DS545298.1:71291:75557:1 gene:PP1S414_8V6 transcript:PP1S414_8V6.1

2

687

0.05

5

2.5

5'    CCTTCAA-CTTCATGCGTGCA         3'
      ||o|||| | |||||||||||
3' TTTGGGAGTTGGTAGTACGCACGTATACGTCA 5'

1443

Physcomitrella patens

TTCTTGCACTCCTCCATCTCT

alignment

plot

GSM410805-5251

PP1S339_15V6.1 cdna:known scaffold:ASM242v1:DS545227.1:82462:83283:1 gene:PP1S339_15V6 transcript:PP1S339_15V6.1

0

434

0

40

1.5

5'     TTCTTGCACTCCTCCATCTCT        3'
       |||||||||||||| |||||o
3' GCAGAAGAACGTGAGGAGCTAGAGGGAGTTGT 5'

1445

Physcomitrella patens

ACACTCTCTCCATTTCTCTGC

alignment

plot

GSM410805-5251

PP1S49_283V6.3 cdna:known scaffold:ASM242v1:DS544938.1:2081089:2083512:1 gene:PP1S49_283V6 transcript:PP1S49_283V6.3

2

447

0.04

2

0.666667

2.5

5'     ACACTCTCTCCATTTCTCTGC        3'
        |||||||||||o|||||| |
3' CACAAGTGAGAGAGGTGAAGAGA-GCGACAAT 5'

1447

Physcomitrella patens

CCACTCTCTCCGTTTCCCTTCC

alignment

plot

GSM410805-5251

PP1S4_174V6.1 cdna:known scaffold:ASM242v1:DS544893.1:1238882:1242329:-1 gene:PP1S4_174V6 transcript:PP1S4_174V6.1

0

1834

0

6886

3

5'     CCACTCTCTCCGTTTCCCTTCC       3'
        |||||||||||||||| | ||
3' AAGTAGTGAGAGAGGCAAAGG-ACGGGGAACA 5'

1449

Physcomitrella patens

TTTCTATCTTCTCTTCCAATC

alignment

plot

GSM410805-5251

PP1S809_2V6.1 cdna:novel scaffold:ASM242v1:DS545619.1:11990:14182:1 gene:PP1S809_2V6 transcript:PP1S809_2V6.1

1

115

0

2

5'     TTTCTATCTTCTCTTCCAATC        3'
       |||||||||||||||||| |
3' TTAGAAAGATAGAAGAGAAGGTGATTAGAATA 5'

1451

Physcomitrella patens

TGACAGAAGAGAGTGAGCAC

alignment

plot

GSM410805-5251

PP1S194_53V6.1 cdna:known scaffold:ASM242v1:DS545083.1:250978:253882:-1 gene:PP1S194_53V6 transcript:PP1S194_53V6.1

0

1401

0

52

1

5'     TGACAGAAGAGAGTGAGCAC         3'
       ||||||||||||| ||||||
3' CGTTACTGTCTTCTCTCTCTCGTGCCGGTCTC 5'

1453

Physcomitrella patens

TGGCATTGTAGGTTTAAGAGC

alignment

plot

GSM410805-5251

PP1S11_231V6.1 cdna:known scaffold:ASM242v1:DS544900.1:1897397:1904060:1 gene:PP1S11_231V6 transcript:PP1S11_231V6.1

0

1861

0

83

3

5'     TGGCATTGTAGGTTTAAGAGC        3'
       |||||||| ||||o|||||o
3' GATTACCGTAACCTCCAGATTCTTTAGTGTGT 5'

1455

Physcomitrella patens

TATGTCCATTACAGTTGCATAC

alignment

plot

GSM410805-5251

PP1S36_325V6.1 cdna:known scaffold:ASM242v1:DS544925.1:2156476:2159302:1 gene:PP1S36_325V6 transcript:PP1S36_325V6.1

0

1056

0

153

3.5

5'     TATGTCCATTACAGTTGCATAC       3'
       |||||||||| ||||||||o
3' CGTGATACAGGTAACGTCAACGTGGCCATTGA 5'

1457

Physcomitrella patens

TTCTTGCACTCCTCCATCTCT

alignment

plot

GSM410805-5251

PP1S66_47V6.1 cdna:known scaffold:ASM242v1:DS544955.1:188370:189289:1 gene:PP1S66_47V6 transcript:PP1S66_47V6.1

0

529

0

25755

5151

2.5

5'     TTCTTGCACTCCTCCATCTCT        3'
       ||||||||||| || |||||o
3' CCAGAAGAACGTGAGAAGCTAGAGGGAGTTGT 5'

1459

Physcomitrella patens

TATGATGCAGATTCTTCATCT

alignment

plot

GSM410805-5251

PP1S371_62V6.1 cdna:known scaffold:ASM242v1:DS545258.1:311162:313926:1 gene:PP1S371_62V6 transcript:PP1S371_62V6.1

2

1088

0.02

6

2.5

5'     TATGATGCAGATTCTTCATCT        3'
        |||||||||||||||||o |
3' TACGCTACTACGTCTAAGAAGTGCATGAGTTA 5'

1461

Physcomitrella patens

TTCGTGCCAAGCTGTGTGCA

alignment

plot

GSM410805-5251

PP1S184_64V6.1 cdna:known scaffold:ASM242v1:DS545073.1:411877:413029:-1 gene:PP1S184_64V6 transcript:PP1S184_64V6.1

2

875

0

125

2

5'     TTCGTGCCAAGCTGTGTGCA         3'
       |||||o|||||||| ||o||
3' AATAAAGCATGGTTCGACTCATGTCTTTATAA 5'

1463

Physcomitrella patens

ACAGTCTCTGACTTCTCGCAG

alignment

plot

GSM410805-5251

PP1S33_92V6.1 cdna:novel scaffold:ASM242v1:DS544922.1:537516:541093:1 gene:PP1S33_92V6 transcript:PP1S33_92V6.1

0

1066

0

14

4

5'     ACAGTCTCTGACTTCTCGCAG        3'
        ||||||||||||||||o  o
3' TAGAAGTCAGAGACTGAAGAGTAGTCGGAAAA 5'

1465

Physcomitrella patens

TTGCTGTGCACTACTTAGTAC

alignment

plot

GSM410805-5251

PP1S123_164V6.1 cdna:known scaffold:ASM242v1:DS545012.1:1209167:1214007:1 gene:PP1S123_164V6 transcript:PP1S123_164V6.1

0

1773

0

24

3

5'     TTGCTGTGCACTACTTAGTAC        3'
        |||||||||| |||||| ||
3' ATGCTACGACACGTGTTGAATCTTGGAGGTGA 5'

1467

Prunus persica

TGACAGAAGAAAGAGAGCAC

alignment

plot

GSM944975_peach_deg_proc

ppa024285m|PACid:17667981

0

822

0

74

1

5'     TGACAGAAGAAAGAGAGCAC         3'
       |||||||||| |||||||||
3' ACCTACTGTCTTCTCTCTCTCGTGCAGGACAG 5'

1469

Prunus persica

GCTCTTCCTCTTCTTCTTCTT

alignment

plot

GSM944975_peach_deg_proc

ppa016948m|PACid:17663461

1

988

0.02

2

1

3

5'     GCTCTTCCTCTTCTTCTTCTT        3'
        ||||||||| |||||||| |
3' AGAAGGAGAAGGAGTAGAAGAAGTACGAGAAG 5'

1471

Prunus persica

TTGACAGAAGAAAGAGAGCAC

alignment

plot

GSM944975_peach_deg_proc

ppa009978m|PACid:17660388

0

164

0.04

101

4

5'     TTGACAGAAGAAAGAGAGCAC        3'
       || |||| |||| ||||| ||
3' CTCTAA-TGTCCTCTTCCTCTCTTGACTCATT 5'

1473

Prunus persica

CTTTGTATTCTTCCACAGCTT

alignment

plot

GSM944975_peach_deg_proc

ppa003603m|PACid:17654922

2

997

0

13

3

5'     CTTTGTATTCTTCCACAGCTT        3'
       | ||||| ||o||||||||o|
3' TCTTG-AACATTAGGAGGTGTCGGAAGTGAAG 5'

1475

Prunus persica

TTCCACAGCTTTCTTGAAC

alignment

plot

GSM944975_peach_deg_proc

ppa011917m|PACid:17645498

0

368

0

158

1

5'    TTCCAC-AGCTTTCTTGAAC          3'
      |||||| |||||||||||||
3' ACTAAGGTGTTCGAAAGAACTTGCTATCGCTG 5'

1477

Prunus persica

TTCCACAGCTTTCTTGAAC

alignment

plot

GSM944975_peach_deg_proc

ppa021277m|PACid:17660357

0

452

0

439

1

5'    TTCCACA-GCTTTCTTGAAC          3'
      ||||||| ||||||||||||
3' TAAAAGGTGTCCGAAAGAACTTGCGACCGCCG 5'

1479

Prunus persica

TGCACTGCCTCTTCCCTGGC

alignment

plot

GSM944975_peach_deg_proc

ppa021383m|PACid:17655177

2

15

0

60

1.5

5'     TGCACTGCCTCTTCCCTGGC         3'
       |||||||||||| |||||o|
3' GGGGACGTGACGGAGATGGGACTGGGTA     5'

1481

Prunus persica

TTGAGCCGTGCCAATATCA

alignment

plot

GSM944975_peach_deg_proc

ppa001781m|PACid:17656366

2

1286

0

17

1.5

5'     TTGAGCCGTGCCAATATCA          3'
       ||||||||o|||||||||
3' CACTAACTCGGCGCGGTTATAGGGAACGCGCT 5'

1483

Prunus persica

TTCCACAGCTTTCTTGAAC

alignment

plot

GSM944975_peach_deg_proc

ppa024293m|PACid:17651902

2

569

0

14

1

5'    TTCCACA-GCTTTCTTGAAC          3'
      ||||||| ||||||||||||
3' TTGAAGGTGTACGAAAGAACTTGCCCCTGCCG 5'

1485

Solanum lycopersicum

TGATTGAGCCGTGCCAATATC

alignment

plot

GSM553688-9229

Solyc08g078800.1.1 cdna:novel chromosome:SL2.40:8:59683241:59684665:-1 gene:Solyc08g078800.1 transcript:Solyc08g078800.1.1

0

407

0

45

0.5

5'     TGATTGAGCCGTGCCAATATC        3'
       |||||||||||o|||||||||
3' GACAACTAACTCGGCGCGGTTATAGTAAACGC 5'

1487

Solanum lycopersicum

AGAATCTTGATGATGCTGCAT

alignment

plot

GSM553688-9229

Solyc10g084340.1.1 cdna:novel chromosome:SL2.40:10:63251955:63255101:-1 gene:Solyc10g084340.1 transcript:Solyc10g084340.1.1

0

1252

0

46

2.5

5'     AGAATCTTGATGATGCTGCAT        3'
        |||||o|||||||||||||
3' AAAGGCTTAGGACTACTACGACGTCATCTCTT 5'

1489

Solanum lycopersicum

AGAATCTTGATGATGCTGCAT

alignment

plot

GSM553688-9229

Solyc02g064960.2.1 cdna:known chromosome:SL2.40:2:30651561:30655131:1 gene:Solyc02g064960.2 transcript:Solyc02g064960.2.1

2

1744

0.02

15

7.5

2.5

5'     AGAATCTTGATGATGCTGCAT        3'
        |||||o|||||||||||||
3' ACTCCCTTAGGACTACTACGACGTCGTCAACG 5'

1491

Solanum lycopersicum

AGAATCTTGATGATGCTGCAT

alignment

plot

GSM553688-9229

Solyc09g007260.2.1 cdna:novel chromosome:SL2.40:9:856629:859952:1 gene:Solyc09g007260.2 transcript:Solyc09g007260.2.1

0

1523

0

25

2.5

5'     AGAATCTTGATGATGCTGCAT        3'
        |||||o|||||||||||||
3' AATCGCTTAGGACTACTACGACGTCATCTCTT 5'

1493

Solanum lycopersicum

TCGGACCAGGCTTCATTCCCC

alignment

plot

GSM553688-9229

Solyc12g044410.1.1 cdna:novel chromosome:SL2.40:12:44793673:44801092:1 gene:Solyc12g044410.1 transcript:Solyc12g044410.1.1

0

559

0

316

105.333

2.5

5'     TCGGACCAGGCTTCATTCCCC        3'
       o||||||||||||||||||
3' CTTAGGCCTGGTCCGAAGTAAGGTCCGTAAAC 5'

1495

Solanum lycopersicum

TTGAGCCGTGCCAATATCACG

alignment

plot

GSM553688-9229

Solyc08g078800.1.1 cdna:novel chromosome:SL2.40:8:59683241:59684665:-1 gene:Solyc08g078800.1 transcript:Solyc08g078800.1.1

2

404

0.02

28

2.5

5'     TTGAGCCGTGCCAATATCACG        3'
       ||||||||o||||||||||
3' AACTAACTCGGCGCGGTTATAGTAAACGCGCA 5'

1497

Solanum lycopersicum

TGCCTGGCTCCCTGTATGCCA

alignment

plot

GSM553688-9229

Solyc06g075150.2.1 cdna:known chromosome:SL2.40:6:43020594:43023443:1 gene:Solyc06g075150.2 transcript:Solyc06g075150.2.1

0

1502

0

38

1

5'     TGCCTGGCTCCCTGTATGCCA        3'
       ||||||||||||||||||||
3' TTGTACGGACCGAGGGACATACGGACGTCATT 5'

1499

Solanum lycopersicum

TCGGACCAGGCTTCATTCCCC

alignment

plot

GSM553688-9229

Solyc08g066500.2.1 cdna:novel chromosome:SL2.40:8:52415522:52421037:-1 gene:Solyc08g066500.2 transcript:Solyc08g066500.2.1

0

577

0

316

105.333

2.5

5'     TCGGACCAGGCTTCATTCCCC        3'
       o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAAA 5'

1501

Solanum lycopersicum

TGATTGAGCCGTGCCAATATC

alignment

plot

GSM553688-9229

Solyc01g090950.2.1 cdna:novel chromosome:SL2.40:1:76416878:76419772:-1 gene:Solyc01g090950.2 transcript:Solyc01g090950.2.1

2

1581

0

16

0.5

5'     TGATTGAGCCGTGCCAATATC        3'
       |||||||||||o|||||||||
3' GACCACTAACTCGGCGCGGTTATAGGGAACGC 5'

1503

Solanum lycopersicum

TCGGACCAGGCTTCATTCCCC

alignment

plot

GSM553688-9229

Solyc02g069830.2.1 cdna:novel chromosome:SL2.40:2:34234662:34242222:-1 gene:Solyc02g069830.2 transcript:Solyc02g069830.2.1

2

629

0

20

2.5

5'     TCGGACCAGGCTTCATTCCCC        3'
       o||||||||||||||| |||
3' CTAAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5'

1505

Solanum lycopersicum

TGACAGAAGAGAGTGAGCACA

alignment

plot

GSM553688-9229

Solyc12g038520.1.1 cdna:novel chromosome:SL2.40:12:35933880:35935930:-1 gene:Solyc12g038520.1 transcript:Solyc12g038520.1.1

2

981

0

5

2.5

1

5'     TGACAGAAGAGAGTGAGCACA        3'
       ||||||||||||| |||||||
3' CTCTACTGTCTTCTCTCTCTCGTGTCGGTCTC 5'

1507

Solanum lycopersicum

TGCCTGGCTCCCTGTATGCCA

alignment

plot

GSM553688-9229

Solyc11g013470.1.1 cdna:novel chromosome:SL2.40:11:6496469:6499311:-1 gene:Solyc11g013470.1 transcript:Solyc11g013470.1.1

0

554

0

79

1.5

5'     TGCCTGGCTCCCTGTATGCCA        3'
       ||||||||||||||o|||||
3' TAGTACGGACCGAGGGACGTACGGGCGTCCTT 5'

1509

Solanum lycopersicum

TTGACAGAAGATAGAGAGCAT

alignment

plot

GSM553688-9229

Solyc05g015510.2.1 cdna:novel chromosome:SL2.40:5:10767268:10772201:-1 gene:Solyc05g015510.2 transcript:Solyc05g015510.2.1

0

2962

0

391

1.5

5'     TTGACAGAAGATAGAGAGCAT        3'
       ||||||||||| ||||||||o
3' AATCAACTGTCTTCTCTCTCTCGTGCTCCTTT 5'

1511

Solanum lycopersicum

TGACAGAAGATAGAGAGCAC

alignment

plot

GSM553688-9229

Solyc07g006030.2.1 cdna:novel chromosome:SL2.40:7:866918:880889:-1 gene:Solyc07g006030.2 transcript:Solyc07g006030.2.1

2

3033

0

10

2.5

5'     TGACAGAAGATAGAGAGCAC         3'
       || ||o||||||||| ||||
3' TTCTAC-GTTTTCTATCTCCCGTGCTAACTGT 5'

1513

Solanum lycopersicum

TTGGATTGAAGGGAGCTCT

alignment

plot

GSM553688-9229

Solyc06g074300.2.1 cdna:novel chromosome:SL2.40:6:42312797:42316469:-1 gene:Solyc06g074300.2 transcript:Solyc06g074300.2.1

2

503

0.03

12

2.5

5'     TTGGATTGAAGGGAGCTCT          3'
       ||||||| |||o|| ||||
3' TTGGAACCTAAGTTCTCT-GAGAACCACCCTT 5'

1515

Solanum lycopersicum

TCGATAAACCTCTGCATCCAG

alignment

plot

GSM553688-9229

Solyc10g005130.2.1 cdna:novel chromosome:SL2.40:10:111879:125251:1 gene:Solyc10g005130.2 transcript:Solyc10g005130.2.1

0

3259

0

88

1

5'    TCGATAA-ACCTCTGCATCCAG        3'
      ||||||| ||||||||||||||
3' TGTAGCTATTATGGAGACGTAGGTCGAGCAAC 5'

1517

Solanum lycopersicum

AGAATCTTGATGATGCTGCAT

alignment

plot

GSM553688-9229

Solyc03g044300.2.1 cdna:known chromosome:SL2.40:3:12742062:12746690:1 gene:Solyc03g044300.2 transcript:Solyc03g044300.2.1

0

1384

0

11

2.5

5'     AGAATCTTGATGATGCTGCAT        3'
        |||||o|||||||||||||
3' ACCCCCTTAGGACTACTACGACGTCGTCAACG 5'

1519

Solanum lycopersicum

TAGCCAAGGATGACTTGCCTG

alignment

plot

GSM553688-9229

Solyc01g006930.2.1 cdna:novel chromosome:SL2.40:1:1506539:1511917:1 gene:Solyc01g006930.2 transcript:Solyc01g006930.2.1

0

1328

0

57

3.5

5'     TAGCCAAGGATGACTTGCCTG        3'
        |||||||||||| o||||oo
3' ACGATTCGGTTCCTACTTGACGGGTACTATCG 5'

1521

Solanum lycopersicum

TTGACAGAAGATAGAGAGCAT

alignment

plot

GSM553688-9229

Solyc03g114850.2.1 cdna:novel chromosome:SL2.40:3:58796755:58802237:1 gene:Solyc03g114850.2 transcript:Solyc03g114850.2.1

2

1482

0

19

9.5

2

5'     TTGACAGAAGATAGAGAGCAT        3'
        |||||||||| |||||||||
3' ACTCTACTGTCTTCTCTCTCTCGTAACGACCT 5'

1523

Solanum lycopersicum

TAGCCAAGGATGACTTGCCTA

alignment

plot

GSM553688-9229

Solyc08g062210.2.1 cdna:novel chromosome:SL2.40:8:47964141:47973284:1 gene:Solyc08g062210.2 transcript:Solyc08g062210.2.1

0

1111

0

38

2.5

5'     TAGCCAAGGATGACTTGCCTA        3'
       ||||||||||||| o|||| |
3' TTGTATCGGTTCCTACTTGACGGCTAATAGGT 5'

1525

Solanum lycopersicum

TGCCTGGCTCCCTGTATGCCA

alignment

plot

GSM553688-9229

Solyc11g069500.1.1 cdna:known chromosome:SL2.40:11:51188434:51191569:-1 gene:Solyc11g069500.1 transcript:Solyc11g069500.1.1

0

1313

0

32

1

5'     TGCCTGGCTCCCTGTATGCCA        3'
       ||||||||||||||||||||
3' TCGTACGGACCGAGGGACATACGGACGTCACT 5'

1527

Solanum lycopersicum

AGAATCTTGATGATGCTGCAT

alignment

plot

GSM553688-9229

Solyc06g075510.2.1 cdna:known chromosome:SL2.40:6:43255163:43258759:-1 gene:Solyc06g075510.2 transcript:Solyc06g075510.2.1

2

1522

0.01

10

2.5

5'     AGAATCTTGATGATGCTGCAT        3'
       ||||||o||||||||||||
3' TACTTCTTAGGACTACTACGACGGCACGTCTT 5'

1529

Solanum lycopersicum

TTGACAGAAGATAGAGAGCAT

alignment

plot

GSM553688-9229

Solyc04g045560.2.1 cdna:novel chromosome:SL2.40:4:33188973:33194461:1 gene:Solyc04g045560.2 transcript:Solyc04g045560.2.1

0

799

0

20

1.5

5'     TTGACAGAAGATAGAGAGCAT        3'
       ||||||||||| ||||||||o
3' AGTAAACTGTCTTCTCTCTCTCGTGCTCCATT 5'

1531

Solanum lycopersicum

TTTGGATTGAAGGGAGCTC

alignment

plot

GSM553688-9229

Solyc01g009070.2.1 cdna:known chromosome:SL2.40:1:3075589:3080069:-1 gene:Solyc01g009070.2 transcript:Solyc01g009070.2.1

2

967

0

26

1

5'     TTTGGATTGAAGGGAGCTC          3'
       |||||| ||||||||||||
3' ACCAAAACCTCACTTCCCTCGAGGTCGAAGTA 5'

1533

Solanum lycopersicum

AGAATCTTGATGATGCTGCAT

alignment

plot

GSM553688-9229

Solyc02g093150.2.1 cdna:known chromosome:SL2.40:2:48655673:48658630:1 gene:Solyc02g093150.2 transcript:Solyc02g093150.2.1

2

1572

0

15

7.5

2.5

5'     AGAATCTTGATGATGCTGCAT        3'
        |||||o|||||||||||||
3' ACTCCCTTAGGACTACTACGACGTCGTCGATG 5'

1535

Solanum lycopersicum

TTTGGATTGAAGGGAGCTC

alignment

plot

GSM553689-9230

Solyc06g073640.2.1 cdna:known chromosome:SL2.40:6:41820787:41825280:-1 gene:Solyc06g073640.2 transcript:Solyc06g073640.2.1

0

1054

0

122

1

5'     TTTGGATTGAAGGGAGCTC          3'
       |||||| ||||||||||||
3' CATGAAACCTCACTTCCCTCGAGCTCGAAGAA 5'

1537

Solanum lycopersicum

AGAATCTTGATGATGCTGCAT

alignment

plot

GSM553689-9230

Solyc02g064960.2.1 cdna:known chromosome:SL2.40:2:30651561:30655131:1 gene:Solyc02g064960.2 transcript:Solyc02g064960.2.1

0

1744

0

248

124

2.5

5'     AGAATCTTGATGATGCTGCAT        3'
        |||||o|||||||||||||
3' ACTCCCTTAGGACTACTACGACGTCGTCAACG 5'

1539

Solanum lycopersicum

TGAAGCTGCCAGCATGATCT

alignment

plot

GSM553689-9230

Solyc02g037530.2.1 cdna:known chromosome:SL2.40:2:21756443:21766699:1 gene:Solyc02g037530.2 transcript:Solyc02g037530.2.1

0

2291

0

161

80.5

3

5'     TGAAGCTGCCAGCATGATCT         3'
         ||||||||||| ||||||
3' TTTATGTTCGACGGTCGGACTAGAAACTCCCA 5'

1541

Solanum lycopersicum

TCGCTTGGTGCAGGTCGGGAC

alignment

plot

GSM553689-9230

Solyc06g072300.2.1 cdna:known chromosome:SL2.40:6:40960724:40969540:-1 gene:Solyc06g072300.2 transcript:Solyc06g072300.2.1

2

388

0.01

23

3

5'     TCGCTTGGTGCAGGTCGGGAC        3'
       | ||||||||||| ||||||
3' AGTCAACGAACCACGTCGAGCCCTTGACCACC 5'

1543

Solanum lycopersicum

TGATTGAGCCGTGCCAATATC

alignment

plot

GSM553689-9230

Solyc02g085600.1.1 cdna:novel chromosome:SL2.40:2:43007859:43009469:1 gene:Solyc02g085600.1 transcript:Solyc02g085600.1.1

2

596

0

4

2

5'     TGATTGAGCCGTGCCAATATC        3'
       |||||||| ||||||| ||||
3' GGCAACTAACTCCGCACGGTCATAGTGTACAC 5'

1545

Solanum lycopersicum

TTGACAGAAGATAGAGAGCAT

alignment

plot

GSM553689-9230

Solyc12g038520.1.1 cdna:novel chromosome:SL2.40:12:35933880:35935930:-1 gene:Solyc12g038520.1 transcript:Solyc12g038520.1.1

0

982

0

15

7.5

2.5

5'     TTGACAGAAGATAGAGAGCAT        3'
        |||||||||| ||||||||o
3' ACTCTACTGTCTTCTCTCTCTCGTGTCGGTCT 5'

1547

Solanum lycopersicum

TGCCTGGCTCCCTGTATGCCA

alignment

plot

GSM553689-9230

Solyc06g075150.2.1 cdna:known chromosome:SL2.40:6:43020594:43023443:1 gene:Solyc06g075150.2 transcript:Solyc06g075150.2.1

0

1502

0

20

1

5'     TGCCTGGCTCCCTGTATGCCA        3'
       ||||||||||||||||||||
3' TTGTACGGACCGAGGGACATACGGACGTCATT 5'

1549

Solanum lycopersicum

TTTGGATTGAAGGGAGCTC

alignment

plot

GSM553689-9230

Solyc12g014120.1.1 cdna:known chromosome:SL2.40:12:4931940:4933799:-1 gene:Solyc12g014120.1 transcript:Solyc12g014120.1.1

2

472

0.01

7

2

5'     TTTGGATTGAAGGGAGCTC          3'
       ||||| |||||||| ||||
3' ATTAAAACCAAACTTCCCCCGAGGTAGACTAT 5'

1551

Solanum lycopersicum

TGACAGAAGAGAGTGAGCACA

alignment

plot

GSM553689-9230

Solyc12g038520.1.1 cdna:novel chromosome:SL2.40:12:35933880:35935930:-1 gene:Solyc12g038520.1 transcript:Solyc12g038520.1.1

2

981

0

2

1

5'     TGACAGAAGAGAGTGAGCACA        3'
       ||||||||||||| |||||||
3' CTCTACTGTCTTCTCTCTCTCGTGTCGGTCTC 5'

1553

Solanum lycopersicum

TTGAGCCGTGCCAATATCACG

alignment

plot

GSM553689-9230

Solyc01g090950.2.1 cdna:novel chromosome:SL2.40:1:76416878:76419772:-1 gene:Solyc01g090950.2 transcript:Solyc01g090950.2.1

2

1578

0

60

2.5

5'     TTGAGCCGTGCCAATATCACG        3'
       ||||||||o||||||||| |
3' CACTAACTCGGCGCGGTTATAGGGAACGCGCT 5'

1555

Solanum lycopersicum

TGAAGCTGCCAGCATGATCTA

alignment

plot

GSM553689-9230

Solyc08g075770.2.1 cdna:novel chromosome:SL2.40:8:57049670:57059466:-1 gene:Solyc08g075770.2 transcript:Solyc08g075770.2.1

2

1203

0.01

5

3

5'     TGAAGCTGCCAGCATGATCTA        3'
       |||| ||||||o||o| ||||
3' TTGAACTT-GACGGTTGTGCGAGATCGTGAAG 5'

1557

Solanum lycopersicum

AGAATCTTGATGATGCTGCAT

alignment

plot

GSM553689-9230

Solyc04g049800.2.1 cdna:novel chromosome:SL2.40:4:42714973:42717503:1 gene:Solyc04g049800.2 transcript:Solyc04g049800.2.1

0

1117

0

12

1.5

5'     AGAATCTTGATGATGCTGCAT        3'
       ||||||o|||||||||||||
3' CATCTCTTAGGACTACTACGACGTCTTCTTCT 5'

1559

Solanum lycopersicum

TTGGATTGAAGGGAGCTCT

alignment

plot

GSM553689-9230

Solyc05g012840.1.1 cdna:novel chromosome:SL2.40:5:5987496:5988167:-1 gene:Solyc05g012840.1 transcript:Solyc05g012840.1.1

0

626

0.03

8

4

3.5

5'     TTGGATTGAAGGGAGCTCT          3'
       o||||o||||||| | ||o
3' CTTTGACCTGACTTCCC-CAAGGGATACTCTT 5'

1561

Solanum lycopersicum

TCATCTTCATCATCATCTTTA

alignment

plot

GSM553689-9230

Solyc01g020410.1.1 cdna:novel chromosome:SL2.40:1:30103231:30103620:1 gene:Solyc01g020410.1 transcript:Solyc01g020410.1.1

2

239

0.02

4

0.03125

1.5

5'     TCATCTTCATCATCATCTTTA        3'
       ||||| |||||||||||||o|
3' TAGTAGTAGTAGTAGTAGTAGAAGTAGTAGTA 5'

1563

Solanum lycopersicum

TTGACAGAAGATAGAGAGCAT

alignment

plot

GSM553689-9230

Solyc05g012040.2.1 cdna:novel chromosome:SL2.40:5:5268986:5273711:1 gene:Solyc05g012040.2 transcript:Solyc05g012040.2.1

2

1430

0

7

2

5'     TTGACAGAAGATAGAGAGCAT        3'
       o|||||||||| ||||||||o
3' ACCCGACTGTCTTCTCTCTCTCGTGTTCTCCT 5'

1565

Solanum lycopersicum

TCATCTTCATCATCATCTTTA

alignment

plot

GSM553689-9230

Solyc07g065800.2.1 cdna:novel chromosome:SL2.40:7:64642057:64643753:-1 gene:Solyc07g065800.2 transcript:Solyc07g065800.2.1

0

253

0.02

12

2.5

5'     TCATCTTCATCATCATCTTTA        3'
       ||||||||||||||||| |o
3' ACATAGTAGAAGTAGTAGTAGCAGCAGTAGTA 5'

1567

Solanum lycopersicum

TAGCCAAGGATGACTTGCCTG

alignment

plot

GSM553689-9230

Solyc01g087240.2.1 cdna:novel chromosome:SL2.40:1:73938193:73944527:1 gene:Solyc01g087240.2 transcript:Solyc01g087240.2.1

0

1171

0

141

2.5

5'     TAGCCAAGGATGACTTGCCTG        3'
        |||||||o|||| |||||||
3' TTGGTTCGGTTCTTACTTAACGGACTCGTATC 5'

1569

Solanum lycopersicum

TCGATAAACCTCTGCATCCAG

alignment

plot

GSM553689-9230

Solyc10g005130.2.1 cdna:novel chromosome:SL2.40:10:111879:125251:1 gene:Solyc10g005130.2 transcript:Solyc10g005130.2.1

0

3259

0

129

1

5'    TCGATAA-ACCTCTGCATCCAG        3'
      ||||||| ||||||||||||||
3' TGTAGCTATTATGGAGACGTAGGTCGAGCAAC 5'

1571

Solanum lycopersicum

TGAAGCTGCCAGCATGATCT

alignment

plot

GSM553689-9230

Solyc03g031970.2.1 cdna:known chromosome:SL2.40:3:8739906:8747501:1 gene:Solyc03g031970.2 transcript:Solyc03g031970.2.1

0

2294

0

161

80.5

3

5'     TGAAGCTGCCAGCATGATCT         3'
         ||||||||||| ||||||
3' TTTATGTTCGACGGTCGGACTAGAAACTCCCA 5'

1573

Solanum lycopersicum

CTAGATTCACGCACAAGCTCG

alignment

plot

GSM553689-9230

Solyc02g069260.2.1 cdna:novel chromosome:SL2.40:2:33782147:33788905:1 gene:Solyc02g069260.2 transcript:Solyc02g069260.2.1

0

3260

0

126

2.5

5'     CTAGATTCACGCACAAGCTCG        3'
        |||||||||||||||o|||
3' GGGTAATCTAAGTGCGTGTTTGAGGAAACGTT 5'

1575

Solanum lycopersicum

TAGCCAAGGATGACTTGCCTA

alignment

plot

GSM553689-9230

Solyc08g062210.2.1 cdna:novel chromosome:SL2.40:8:47964141:47973284:1 gene:Solyc08g062210.2 transcript:Solyc08g062210.2.1

0

1111

0

80

2.5

5'     TAGCCAAGGATGACTTGCCTA        3'
       ||||||||||||| o|||| |
3' TTGTATCGGTTCCTACTTGACGGCTAATAGGT 5'

1577

Solanum lycopersicum

GTTCTATCTTCTCTTCCAGA

alignment

plot

GSM553689-9230

Solyc04g015640.1.1 cdna:novel chromosome:SL2.40:4:5929168:5929871:-1 gene:Solyc04g015640.1 transcript:Solyc04g015640.1.1

1

280

0.04

4

3.5

5'     GTTCTATCTTCTCTTCCAGA         3'
       |||| ||||| ||||| |o|
3' TGTTCAAGTTAGAAAAGAAGTTTTAGGGGATA 5'

1579

Solanum lycopersicum

TGCCTGGCTCCCTGTATGCCA

alignment

plot

GSM553689-9230

Solyc11g069500.1.1 cdna:known chromosome:SL2.40:11:51188434:51191569:-1 gene:Solyc11g069500.1 transcript:Solyc11g069500.1.1

0

1313

0

43

1

5'     TGCCTGGCTCCCTGTATGCCA        3'
       ||||||||||||||||||||
3' TCGTACGGACCGAGGGACATACGGACGTCACT 5'

1581

Solanum lycopersicum

TTGACAGAAGATAGAGAGCAT

alignment

plot

GSM553689-9230

Solyc04g045560.2.1 cdna:novel chromosome:SL2.40:4:33188973:33194461:1 gene:Solyc04g045560.2 transcript:Solyc04g045560.2.1

0

799

0

12

1.5

5'     TTGACAGAAGATAGAGAGCAT        3'
       ||||||||||| ||||||||o
3' AGTAAACTGTCTTCTCTCTCTCGTGCTCCATT 5'

1583

Solanum lycopersicum

TTGGATTGAAGGGAGCTCT

alignment

plot

GSM553689-9230

Solyc08g048390.1.1 cdna:known chromosome:SL2.40:8:39810608:39811771:1 gene:Solyc08g048390.1 transcript:Solyc08g048390.1.1

0

1025

0.04

22

3.5

5'     TTGGATTGAAGGGAGCTCT          3'
       |||||o|||||||  |o|o
3' TCTTAACCTGACTTCCCAGGGGGATAACTTTG 5'

1585

Solanum lycopersicum

CTGAAGTGTTTGGGGGAACTCC

alignment

plot

GSM553689-9230

Solyc09g082860.2.1 cdna:novel chromosome:SL2.40:9:63941988:63946072:1 gene:Solyc09g082860.2 transcript:Solyc09g082860.2.1

2

488

0.01

11

3.5

5'     CTGAAGTGTTTGGGGGAACTCC       3'
        ||||| ||||||o|||||||
3' ACTTTACTTCTCAAACCTCCTTGAGCCTAAGA 5'

1587

Solanum lycopersicum

TTTGGATTGAAGGGAGCTC

alignment

plot

GSM553689-9230

Solyc10g019260.1.1 cdna:novel chromosome:SL2.40:10:12672810:12674303:1 gene:Solyc10g019260.1 transcript:Solyc10g019260.1.1

2

150

0

9

1.5

5'     TTTGGATTGAAGGGAGCTC          3'
       |||||||o||| |||||||
3' CCGGAAACCTAGCTTACCTCGAGGTTAGAGAA 5'

1589

Solanum lycopersicum

TCGCTTGGTGCAGGTCGGGAC

alignment

plot

GSM553690-9231

Solyc06g072300.2.1 cdna:known chromosome:SL2.40:6:40960724:40969540:-1 gene:Solyc06g072300.2 transcript:Solyc06g072300.2.1

2

388

0.01

33

3

5'     TCGCTTGGTGCAGGTCGGGAC        3'
       | ||||||||||| ||||||
3' AGTCAACGAACCACGTCGAGCCCTTGACCACC 5'

1591

Solanum lycopersicum

AGAATCTTGATGATGCTGCAT

alignment

plot

GSM553690-9231

Solyc10g084340.1.1 cdna:novel chromosome:SL2.40:10:63251955:63255101:-1 gene:Solyc10g084340.1 transcript:Solyc10g084340.1.1

0

1252

0

28

2.5

5'     AGAATCTTGATGATGCTGCAT        3'
        |||||o|||||||||||||
3' AAAGGCTTAGGACTACTACGACGTCATCTCTT 5'

1593

Solanum lycopersicum

TGAAGCTGCCAGCATGATCT

alignment

plot

GSM553690-9231

Solyc02g037530.2.1 cdna:known chromosome:SL2.40:2:21756443:21766699:1 gene:Solyc02g037530.2 transcript:Solyc02g037530.2.1

0

2291

0

136

68

3

5'     TGAAGCTGCCAGCATGATCT         3'
         ||||||||||| ||||||
3' TTTATGTTCGACGGTCGGACTAGAAACTCCCA 5'

1595

Solanum lycopersicum

TTGAGCCGTGCCAATATCACG

alignment

plot

GSM553690-9231

Solyc08g078800.1.1 cdna:novel chromosome:SL2.40:8:59683241:59684665:-1 gene:Solyc08g078800.1 transcript:Solyc08g078800.1.1

2

404

0

11

2.5

5'     TTGAGCCGTGCCAATATCACG        3'
       ||||||||o||||||||||
3' AACTAACTCGGCGCGGTTATAGTAAACGCGCA 5'

1597

Solanum lycopersicum

TTAATATGTTGTGTTTGTTGT

alignment

plot

GSM553690-9231

Solyc01g090690.2.1 cdna:novel chromosome:SL2.40:1:76088526:76099238:1 gene:Solyc01g090690.2 transcript:Solyc01g090690.2.1

2

2308

0.05

8

3

5'     TTAATATGTTGTGTTTGTTGT        3'
       ||||o| ||||o|||||| ||
3' ACGCAATTGTTCAACGCAAACA-CATAGAGGA 5'

1599

Solanum lycopersicum

TTTGGATTGAAGGGAGCTC

alignment

plot

GSM553690-9231

Solyc06g073640.2.1 cdna:known chromosome:SL2.40:6:41820787:41825280:-1 gene:Solyc06g073640.2 transcript:Solyc06g073640.2.1

2

1054

0

4

1

5'     TTTGGATTGAAGGGAGCTC          3'
       |||||| ||||||||||||
3' CATGAAACCTCACTTCCCTCGAGCTCGAAGAA 5'

1601

Solanum lycopersicum

TTGAGCCGTGCCAATATCACG

alignment

plot

GSM553690-9231

Solyc01g090950.2.1 cdna:novel chromosome:SL2.40:1:76416878:76419772:-1 gene:Solyc01g090950.2 transcript:Solyc01g090950.2.1

0

1578

0

163

2.5

5'     TTGAGCCGTGCCAATATCACG        3'
       ||||||||o||||||||| |
3' CACTAACTCGGCGCGGTTATAGGGAACGCGCT 5'

1603

Solanum lycopersicum

TCGGACCAGGCTTCATTCCCC

alignment

plot

GSM553690-9231

Solyc02g069830.2.1 cdna:novel chromosome:SL2.40:2:34234662:34242222:-1 gene:Solyc02g069830.2 transcript:Solyc02g069830.2.1

0

629

0

32

2.5

5'     TCGGACCAGGCTTCATTCCCC        3'
       o||||||||||||||| |||
3' CTAAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5'

1605

Solanum lycopersicum

TCATCTTCATCATCATCTTTA

alignment

plot

GSM553690-9231

Solyc01g057520.2.1 cdna:novel chromosome:SL2.40:1:54163130:54174043:1 gene:Solyc01g057520.2 transcript:Solyc01g057520.2.1

2

3052

0.01

4

1.5

5'     TCATCTTCATCATCATCTTTA        3'
       ||||| |||||||||||||o|
3' CAGGAGTAGTAGTAGTAGTAGAAGTCAAAGGA 5'

1607

Solanum lycopersicum

TCGGACCAGGCTTCATTCCCC

alignment

plot

GSM553690-9231

Solyc08g066500.2.1 cdna:novel chromosome:SL2.40:8:52415522:52421037:-1 gene:Solyc08g066500.2 transcript:Solyc08g066500.2.1

0

577

0

515

171.667

2.5

5'     TCGGACCAGGCTTCATTCCCC        3'
       o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAAA 5'

1609

Solanum lycopersicum

TTTGGATTGAAGGGAGCTC

alignment

plot

GSM553690-9231

Solyc12g014120.1.1 cdna:known chromosome:SL2.40:12:4931940:4933799:-1 gene:Solyc12g014120.1 transcript:Solyc12g014120.1.1

2

472

0.03

4

2

5'     TTTGGATTGAAGGGAGCTC          3'
       ||||| |||||||| ||||
3' ATTAAAACCAAACTTCCCCCGAGGTAGACTAT 5'

1611

Solanum lycopersicum

TTTCCAATTCCACCCATTCCTA

alignment

plot

GSM553690-9231

Solyc06g005410.2.1 cdna:novel chromosome:SL2.40:6:421845:422623:-1 gene:Solyc06g005410.2 transcript:Solyc06g005410.2.1

0

389

0

11

4

5'     TTTCCAATTCCACCCATTCCTA       3'
       ||||| |||||||| || || |
3' ACAAAAAGGATAAGGTGGTTACGG-TATATAT 5'

1613

Solanum lycopersicum

TTTTTGAAGAGTTCGAGCAAC

alignment

plot

GSM553690-9231

Solyc02g089930.2.1 cdna:novel chromosome:SL2.40:2:46180875:46185136:-1 gene:Solyc02g089930.2 transcript:Solyc02g089930.2.1

2

958

0.03

5

3

5'     TTTTTGAAGAGTTCGAGCAAC        3'
       || |||||||||o|o|||| |
3' AGGTAATAACTTCTCAGGTTCGT-GAGATCTG 5'

1615

Solanum lycopersicum

TTGGATTGAAGGGAGCTCT

alignment

plot

GSM553690-9231

Solyc02g077250.2.1 cdna:known chromosome:SL2.40:2:36822112:36823838:-1 gene:Solyc02g077250.2 transcript:Solyc02g077250.2.1

1

908

0.02

4

2

3.5

5'     TTGGATTGAAGGGAGCTCT          3'
       o||||o||||||| | ||o
3' CTTTGACCTGACTTCCC-CAAGGGACACTCTT 5'

1617

Solanum lycopersicum

TGCCTGGCTCCCTGTATGCCA

alignment

plot

GSM553690-9231

Solyc11g013470.1.1 cdna:novel chromosome:SL2.40:11:6496469:6499311:-1 gene:Solyc11g013470.1 transcript:Solyc11g013470.1.1

0

554

0

473

1.5

5'     TGCCTGGCTCCCTGTATGCCA        3'
       ||||||||||||||o|||||
3' TAGTACGGACCGAGGGACGTACGGGCGTCCTT 5'

1619

Solanum lycopersicum

TTGACAGAAGATAGAGAGCAT

alignment

plot

GSM553690-9231

Solyc05g015510.2.1 cdna:novel chromosome:SL2.40:5:10767268:10772201:-1 gene:Solyc05g015510.2 transcript:Solyc05g015510.2.1

0

2962

0

50

1.5

5'     TTGACAGAAGATAGAGAGCAT        3'
       ||||||||||| ||||||||o
3' AATCAACTGTCTTCTCTCTCTCGTGCTCCTTT 5'

1621

Solanum lycopersicum

TTGACAGAAGATAGAGAGCAT

alignment

plot

GSM553690-9231

Solyc10g078700.1.1 cdna:novel chromosome:SL2.40:10:59754038:59758728:-1 gene:Solyc10g078700.1 transcript:Solyc10g078700.1.1

0

775

0

65

1.5

5'     TTGACAGAAGATAGAGAGCAT        3'
       ||||||||||| ||||||||o
3' GCTAAACTGTCTTCTCTCTCTCGTGGTGAACT 5'

1623

Solanum lycopersicum

TGAAGCTGCCAGCATGATCT

alignment

plot

GSM553690-9231

Solyc03g031970.2.1 cdna:known chromosome:SL2.40:3:8739906:8747501:1 gene:Solyc03g031970.2 transcript:Solyc03g031970.2.1

0

2294

0

136

68

3

5'     TGAAGCTGCCAGCATGATCT         3'
         ||||||||||| ||||||
3' TTTATGTTCGACGGTCGGACTAGAAACTCCCA 5'

1625

Solanum lycopersicum

CTAGATTCACGCACAAGCTCG

alignment

plot

GSM553690-9231

Solyc02g069260.2.1 cdna:novel chromosome:SL2.40:2:33782147:33788905:1 gene:Solyc02g069260.2 transcript:Solyc02g069260.2.1

0

3260

0

425

2.5

5'     CTAGATTCACGCACAAGCTCG        3'
        |||||||||||||||o|||
3' GGGTAATCTAAGTGCGTGTTTGAGGAAACGTT 5'

1627

Solanum lycopersicum

TAGCCAAGGATGACTTGCCTA

alignment

plot

GSM553690-9231

Solyc08g062210.2.1 cdna:novel chromosome:SL2.40:8:47964141:47973284:1 gene:Solyc08g062210.2 transcript:Solyc08g062210.2.1

0

1111

0

40

2.5

5'     TAGCCAAGGATGACTTGCCTA        3'
       ||||||||||||| o|||| |
3' TTGTATCGGTTCCTACTTGACGGCTAATAGGT 5'

1629

Solanum lycopersicum

TTGACAGAAGATAGAGAGCAT

alignment

plot

GSM553690-9231

Solyc05g012040.2.1 cdna:novel chromosome:SL2.40:5:5268986:5273711:1 gene:Solyc05g012040.2 transcript:Solyc05g012040.2.1

2

1430

0.01

2

5'     TTGACAGAAGATAGAGAGCAT        3'
       o|||||||||| ||||||||o
3' ACCCGACTGTCTTCTCTCTCTCGTGTTCTCCT 5'

1631

Solanum lycopersicum

TCGATAAACCTCTGCATCCAG

alignment

plot

GSM553690-9231

Solyc10g005130.2.1 cdna:novel chromosome:SL2.40:10:111879:125251:1 gene:Solyc10g005130.2 transcript:Solyc10g005130.2.1

2

3259

0

7

1

5'    TCGATAA-ACCTCTGCATCCAG        3'
      ||||||| ||||||||||||||
3' TGTAGCTATTATGGAGACGTAGGTCGAGCAAC 5'

1633

Solanum lycopersicum

AGAATCTTGATGATGCTGCAT

alignment

plot

GSM553690-9231

Solyc11g072600.1.1 cdna:known chromosome:SL2.40:11:52857365:52860247:-1 gene:Solyc11g072600.1 transcript:Solyc11g072600.1.1

0

1288

0

28

1.5

5'     AGAATCTTGATGATGCTGCAT        3'
       ||||||o|||||||||||||
3' CAACTCTTAGGACTACTACGACGTCGTCTCTT 5'

1635

Solanum lycopersicum

TCATCTTCATCATCATCTTTA

alignment

plot

GSM553690-9231

Solyc11g071910.1.1 cdna:novel chromosome:SL2.40:11:52312893:52321825:1 gene:Solyc11g071910.1 transcript:Solyc11g071910.1.1

0

1508

0.03

11

2.5

5'     TCATCTTCATCATCATCTTTA        3'
       |||||o||||| |||||o|o|
3' TAGGAGTAGGAGTAGGAGTAGGAGTAGCAGCA 5'

1637

Triticum aestivum

CTACTCCCTCCGTTCGAAA

alignment

plot

GSM911923

gi|241990229|gb|AK330571.1|AK330571 HTC Triticum aestivum cDNA, clone: SET4_M12, cultivar: Chinese Spring.

2

205

0.01

3

2

5'     CTACTCCCTCCGTTCGAAA          3'
       ||||||| |||||||| ||
3' TATAGATGAGGAAGGCAAGCCTTAATGAACAG 5'

1639

Triticum aestivum

TTGAGCCGTGCCAATATCACG

alignment

plot

GSM911923

gi|241986925|gb|AK334186.1|AK334186 HTC Triticum aestivum cDNA, clone: WT009_E16, cultivar: Chinese Spring.

0

1187

0

1903

2

5'     TTGAGCCGTGCCAATATCACG        3'
       ||||||||o||||||||| |o
3' CACTAACTCGGCGCGGTTATAGAGTGCGCGCG 5'

1641

Triticum aestivum

TCCGGAGGGATTCCCTCCTTG

alignment

plot

GSM911923

gi|32351003|gb|AY290730.1|AY290730 PLN Triticum aestivum ubiquitin-like mRNA, partial sequence.

2

272

0

38

2

5'     TCCGGAGGGATTCCCTCCTTG        3'
       ||||| ||||| |||||||||
3' GACCAGGCCGCCCTACGGGAGGAACAGGACCT 5'

1643

Triticum aestivum

TAGCCAAGGATGATTTGCCT

alignment

plot

GSM911923

gi|45861200|gb|AY568297.1|AY568297 PLN Triticum aestivum CCAAT-box transcription factor complex WHAP3 (WHAP3) mRNA, complete cds

0

824

0

109

14.5165

2

5'     TAGCCAAGGATGATTTGCCT         3'
        ||||||||||||||||| |
3' TGTATTCGGTTCCTACTAAACG-ACCCCCGTT 5'

1645

Triticum aestivum

CTCCGTCCCAAAATATAAGAA

alignment

plot

GSM911923

gi|241985236|gb|AK332496.1|AK332496 HTC Triticum aestivum cDNA, clone: WT004_B23, cultivar: Chinese Spring.

2

2753

0

5

2.5

5'     CTCCGTCCCAAAATATAAGAA        3'
       |||||o|||| |||||||||
3' GAGAGAGGCGGGGTATTATATTCTCGTAAAAA 5'

1647

Triticum aestivum

TCCGGAGGGATTCCCTCCTTG

alignment

plot

GSM911923

gi|155965253|gb|EU081898.1|EU081898 PLN Triticum aestivum polyubiquitin (WubiG) mRNA, partial cds.

2

895

0

161

32.2

2.5

5'     TCCGGAGGGATTCCCTCCTTG        3'
       ||||| ||o|| |||||||||
3' GACCAGGCCCCCTTACGGGAGGAACAGGACCT 5'

1649

Triticum aestivum

TAGCCAAGGATGATTTGCC

alignment

plot

GSM911923

gi|45861204|gb|AY568299.1|AY568299 PLN Triticum aestivum CCAAT-box transcription factor complex WHAP5 (WHAP5) mRNA, complete cds

0

823

0

109

14.5165

1

5'     TAGCCAAGGATGATTTGCC          3'
        ||||||||||||||||||
3' TGTATTCGGTTCCTACTAAACGGCCCCCGTTT 5'

1651

Triticum aestivum

ATGTGTCACTGAAATGTGGGC

alignment

plot

GSM911923

gi|241983873|gb|AK331815.1|AK331815 HTC Triticum aestivum cDNA, clone: WT002_G20, cultivar: Chinese Spring.

0

2096

0.02

36

4

5'     ATGTGTCACTGAAATGTGGGC        3'
       | |||||||||| |oo||oo|
3' ATTGT-CACAGTGACTCTGTACTTGTTCTTTC 5'

1653

Triticum aestivum

TCCACAGGCTTTCTTGAACTG

alignment

plot

GSM911923

gi|241986105|gb|AK333366.1|AK333366 HTC Triticum aestivum cDNA, clone: WT006_E19, cultivar: Chinese Spring.

1

631

0

36

3.5

5'     TCCACAGGCTTTCTTGAACTG        3'
       ||||||o|||| ||||| ||
3' GAGGAGGTGTTCGAA-GAACTCGAGTGGTTAG 5'

1655

Triticum aestivum

CTCCGTCCCAAAATATAAGAA

alignment

plot

GSM911923

gi|241986094|gb|AK333355.1|AK333355 HTC Triticum aestivum cDNA, clone: WT006_E09, cultivar: Chinese Spring.

2

825

0.03

11

3

5'     CTCCGTCCCAAAATATAAGAA        3'
       ||| |||||| |||||||||
3' GAGAGAGACAGGGTATTATATTCTCGTAAAAA 5'

1657

Triticum aestivum

TGACAGAAGAGAGTGAGCACA

alignment

plot

GSM911923

gi|241986369|gb|AK333630.1|AK333630 HTC Triticum aestivum cDNA, clone: WT006_P06, cultivar: Chinese Spring.

2

1645

0.03

153

3

5'     TGACAGAAGAGAGTGAGCACA        3'
       ||||||||||||| |||||
3' ACGAACTGTCTTCTCTCTCTCGTACGACTTCT 5'

1659

Triticum aestivum

TAGCCAAGGATGATTTGCC

alignment

plot

GSM911923

gi|32128487|gb|BT008936.1|BT008936 PLN Triticum aestivum clone wdi1c.pk002.b10:fis, full insert mRNA sequence.

0

947

0

82

41

2

5'     TAGCCAAGGATGATTTGCC          3'
        |||||||||||| |||||
3' TTATTTCGGTTCCTACTCAACGGTCTGGTGTG 5'

1661

Triticum aestivum

TGCAGTTGCTGTCTCAAGCTT

alignment

plot

GSM911923

gi|241987773|gb|AK335030.1|AK335030 HTC Triticum aestivum cDNA, clone: WT011_N18, cultivar: Chinese Spring.

2

883

0.05

2

2.5

5'     TGCAGTTGCTGTCTCA-AGCTT       3'
       |||||||o|||||||| | |||
3' GGGAACGTCAATGACAGAGTGTAGAATTCGTA 5'

1663

Triticum aestivum

TAGCCAAGGATGATTTGCC

alignment

plot

GSM911923

gi|32128614|gb|BT009063.1|BT009063 PLN Triticum aestivum clone wds1f.pk002.p21:fis, full insert mRNA sequence.

0

1145

0

438

1.5

5'     TAGCCAAGGATGATTTGCC          3'
        |||||||o||||||||||
3' TCATCTCGGTTCTTACTAAACGGACGTCTGTT 5'

1665

Triticum aestivum

TTGTCGCAGAAATGGATGTATCTA

alignment

plot

GSM911923

gi|241985618|gb|AK332879.1|AK332879 HTC Triticum aestivum cDNA, clone: WT005_B16, cultivar: Chinese Spring.

2

685

0

27

4

5'     TTGTCGCAGAAATGGATGTATCTA     3'
       |||| ||||| | o||||||||o|
3' TAGTAACAACGTCTGTTTCTACATAGGTGGTT 5'

1667

Triticum aestivum

CCTCTTCCTCTTCCTCCTCGC

alignment

plot

GSM911923

gi|40644803|gb|AJ577389.1|AJ577389 PLN Triticum aestivum partial mRNA for putative DIP2 protein.

1

793

0.05

10

4

5'     CCTCTTCCTCTTCCTCCTCGC        3'
       |||||||||||| | ||| |
3' GACAGGAGAAGGAGAACGCGGA-CTTTGTTGT 5'

1669

Triticum aestivum

TCCGGAGGGATTCCCTCCTTG

alignment

plot

GSM911923

gi|33325639|gb|AF517839.1|AF517839 PLN Triticum aestivum ubiquitin protein mRNA, partial cds.

2

107

0

74

2

5'     TCCGGAGGGATTCCCTCCTTG        3'
       ||||| ||||| |||||||||
3' GACCAGGCCCCCCTACGGGAGGAACAGGACCT 5'

1671

Triticum aestivum

TAGCCAAGGATGATTTGCC

alignment

plot

GSM911923

gi|32129145|gb|BT009594.1|BT009594 PLN Triticum aestivum clone wre1n.pk0066.e4:fis, full insert mRNA sequence.

0

906

0

113

56.5

2

5'     TAGCCAAGGATGATTTGCC          3'
        |||||||||||| |||||
3' AGTATTCGGTTCCTACTTAACGGTGGCCGTCG 5'

1673

Triticum aestivum

CTCCGTTCCTAAATATAAGCT

alignment

plot

GSM911923

gi|241989722|gb|AK330263.1|AK330263 HTC Triticum aestivum cDNA, clone: SET4_A13, cultivar: Chinese Spring.

2

3463

0

2

1

5'     CTCCGTTCCTAAATATAAGCT        3'
       ||||||||||||||||||| |
3' GAGGGAGGCAAGGATTTATATTC-AGAAAAAT 5'

1675

Triticum aestivum

TTTGGGACGGAGGGAGTACTA

alignment

plot

GSM911923

gi|241988462|gb|AK335720.1|AK335720 HTC Triticum aestivum cDNA, clone: WT013_J19, cultivar: Chinese Spring.

2

3335

0

3

2

5'     TTTGGGACGGAGGGAGTACTA        3'
       ||| ||||||||||||||| |
3' CATAAAAGCCTGCCTCCCTCATGTTTGAAAAT 5'

1677

Triticum aestivum

TTTTGGAACGGAGGGAGTA

alignment

plot

GSM911923

gi|241989722|gb|AK330263.1|AK330263 HTC Triticum aestivum cDNA, clone: SET4_A13, cultivar: Chinese Spring.

2

3326

0

18

9

2

5'     TTTTGGAACGGAGGGAGTA          3'
       ||| |||||||||| ||||
3' ATATAAATCCTTGCCTCCGTCATCTTTCGTGG 5'

1679

Triticum aestivum

TCCACATTGGGTCAATGTTCC

alignment

plot

GSM911923

gi|241988441|gb|AK335699.1|AK335699 HTC Triticum aestivum cDNA, clone: WT013_I22, cultivar: Chinese Spring.

2

1109

0.02

11

3

5'     TCCACATTGGGTCAAT-GTTCC       3'
       || ||||||||||||| ||| |
3' TAACAGCTGTAACCCAGTTAACAAAGGAAGTG 5'

1681

Triticum aestivum

TGCGACAAGTAATTCCGAACGGA

alignment

plot

GSM911923

gi|42391852|gb|AB161682.1|AB161682 PLN Triticum aestivum WCSP2 mRNA for cold shock domain protein 2, complete cds.

2

878

0.05

30

15

4

5'    TGCGACAAG-TAATTCCGAACGGA      3'
      oo||||||| |||o| ||||||o|
3' GCTGTGCTGTTCTATTGAAGCTTGCTTGTTAT 5'

1683

Triticum aestivum

TTTGGGACGGAGGGAGTACTT

alignment

plot

GSM911923

gi|241985579|gb|AK332840.1|AK332840 HTC Triticum aestivum cDNA, clone: WT005_A03, cultivar: Chinese Spring.

2

1654

0

8

4

1.5

5'     TTTGGGACGGAGGGAGTACTT        3'
       |||||o|||||||||||| ||
3' GATAAAACCTTGCCTCCCTCATCAATAGTCCC 5'

1685

Triticum aestivum

TCCGGAGGGATTCCCTCCTTG

alignment

plot

GSM911923

gi|21815|gb|X56803.1|X56803 PLN T.aestivum L. mRNA for ubiquitin.

2

109

0.02

19

4.75

2.5

5'     TCCGGAGGGATTCCCTCCTTG        3'
       ||||| ||o|| |||||||||
3' GACCAGGCCCCCTTACGGGAGGAACAGGACCT 5'

1687

Triticum aestivum

TTTTGGAACGGAGGGAGTA

alignment

plot

GSM911923

gi|241988462|gb|AK335720.1|AK335720 HTC Triticum aestivum cDNA, clone: WT013_J19, cultivar: Chinese Spring.

2

3336

0

2

1.5

5'     TTTTGGAACGGAGGGAGTA          3'
       |||o|| ||||||||||||
3' CATAAAAGCC-TGCCTCCCTCATGTTTGAAAA 5'

1689

Triticum aestivum

AATTATGGAACGGAGGGAGTA

alignment

plot

GSM911923

gi|32128877|gb|BT009326.1|BT009326 PLN Triticum aestivum clone wlm24.pk0016.f9:fis, full insert mRNA sequence.

2

1880

0.05

3

1

3

5'     AATTATGGAACGGAGGGAGTA        3'
       | ||| |||||||| ||||||
3' TTTATAAAT-CCTTGCCTACCTCATGATGTCT 5'

1691

Triticum aestivum

TTTTGGGACGGAGGGAGTATT

alignment

plot

GSM911923

gi|241988219|gb|AK335477.1|AK335477 HTC Triticum aestivum cDNA, clone: WT012_P23, cultivar: Chinese Spring.

2

929

0.01

7

1.4

3

5'     TTTTGGGACGGAGGGAGTATT        3'
       ||| ||o|||||||o|||||
3' TTATAAATCCTTGCCTCCTTCATATACAATTA 5'

1693

Triticum aestivum

CTACTCCCTCCGTCCGAAA

alignment

plot

GSM911923

gi|241985690|gb|AK332951.1|AK332951 HTC Triticum aestivum cDNA, clone: WT005_E12, cultivar: Chinese Spring.

2

2944

0.04

2

3

5'     CTACTCCCTCCGTCCGAAA          3'
       |||||||||| || | |||
3' CAAAGATGAGGGAGACATGGTTTAATGAGCAG 5'

1695

Triticum aestivum

TTTTGGGACGGAGGGAGTATT

alignment

plot

GSM911923

gi|241985579|gb|AK332840.1|AK332840 HTC Triticum aestivum cDNA, clone: WT005_A03, cultivar: Chinese Spring.

2

1655

0

3

1.5

5'     TTTTGGGACGGAGGGAGTATT        3'
       ||||||o|||||||||||| |
3' AGATAAAACCTTGCCTCCCTCATCAATAGTCC 5'

1697

Triticum aestivum

TGACATGGTTGGCCCATGGAA

alignment

plot

GSM911923

gi|241988316|gb|AK335574.1|AK335574 HTC Triticum aestivum cDNA, clone: WT013_E02, cultivar: Chinese Spring.

2

3331

0

3

0

5'     TGACATGGTTGGCCCATGGAA        3'
       |||||||||||||||||||||
3' CGGTACTGTACCAACCGGGTACCTTAGGCATC 5'

1699

Triticum aestivum

CATGTGCCTTTCTTCTCCACC

alignment

plot

GSM911923

gi|32128556|gb|BT009005.1|BT009005 PLN Triticum aestivum clone wdk2c.pk018.g2:fis, full insert mRNA sequence.

2

1711

0.05

8

3

5'     CATGTGCCTTTCTTCTCCACC        3'
       ||||| ||||o|o|||| |||
3' TAAAGTACAAGGAAGGGAGAGTTGGGAAAATA 5'

1701

Triticum aestivum

TTTGGGACGGAGGGAGTACTT

alignment

plot

GSM911923

gi|241989169|gb|AK336148.1|AK336148 HTC Triticum aestivum cDNA, clone: SET3_F15, cultivar: Chinese Spring.

2

1145

0

5

2

5'     TTTGGGACGGAGGGAGTACTT        3'
       |||||||||||||||||||
3' TATAAAACCCTGCCTCCCTCATGTTATGTCGT 5'

1703

Triticum aestivum

TATTACTTCCTCCGTCCCAAA

alignment

plot

GSM911923

gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring.

2

1419

0.02

3

5'     TATTACTTCCTCCGTCCCAAA        3'
       o| ||||o||||||| |||||
3' TCATGT-ATGAGGGAGGCAAGGTTTTATCTAC 5'

1705

Triticum aestivum

TTTTGGGACGGAGGGAGTATT

alignment

plot

GSM911923

gi|32129003|gb|BT009452.1|BT009452 PLN Triticum aestivum clone wlmk8.pk0022.f7:fis, full insert mRNA sequence.

2

792

0

7

1.4

2.5

5'     TTTTGGGACGGAGGGAGTATT        3'
       ||| ||o|||||||||||| |
3' TTATAAATCCTTGCCTCCCTCATCATCTATCT 5'

1707

Triticum aestivum

TTTTGGGACGGAGGGAGTATT

alignment

plot

GSM911923

gi|241989169|gb|AK336148.1|AK336148 HTC Triticum aestivum cDNA, clone: SET3_F15, cultivar: Chinese Spring.

2

1146

0

3

1.5

5'     TTTTGGGACGGAGGGAGTATT        3'
       |||||||||||||||||||o
3' ATATAAAACCCTGCCTCCCTCATGTTATGTCG 5'

1709

Triticum aestivum

ACTACTCCCTCCGTTCCTAAA

alignment

plot

GSM911923

gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring.

2

1418

0

10

2

5'     ACTACTCCCTCCGTTCCTAAA        3'
       | ||||||||||||||| |||
3' CATGT-ATGAGGGAGGCAAGGTTTTATCTACT 5'

1711

Triticum aestivum

TTTGGATTGAAGGGAGCTCTG

alignment

plot

GSM911923

gi|47680448|gb|AY615200.1|AY615200 PLN Triticum aestivum transcription factor Myb3 (Myb3) mRNA, complete cds.

0

988

0

81

2.5

5'     TTTGGATTGAAGGGAGCTCTG        3'
       o||||| ||||||||||||oo
3' CATAGAACCTCACTTCCCTCGAGGTAGAAGTT 5'

1713

Triticum aestivum

TTTGGGACGGAGGGAGTACTT

alignment

plot

GSM911923

gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring.

2

1349

0.01

8

4

2.5

5'     TTTGGGACGGAGGGAGTACTT        3'
       |||||o|||||||||||||
3' GATAAAACCTTGCCTCCCTCATGCTTTTAGTG 5'

1715

Triticum aestivum

CTCCGTCCCAAAATATAAGAA

alignment

plot

GSM911923

gi|241986608|gb|AK333869.1|AK333869 HTC Triticum aestivum cDNA, clone: SET2_C23, cultivar: Chinese Spring.

2

1506

0

3

1

5'     CTCCGTCCCAAAATATAAGAA        3'
       |||||||||| ||||||||||
3' GAGGGAGGCAGGGTATTATATTCTTGCAAAAA 5'

1717

Triticum aestivum

TATTACTTCCTCCGTCCCAAA

alignment

plot

GSM911923

gi|241985826|gb|AK333087.1|AK333087 HTC Triticum aestivum cDNA, clone: WT005_J20, cultivar: Chinese Spring.

2

1771

0.05

2

3.5

5'     TATTACTTCCTCCGTCCCAAA        3'
        |||||o|||||| ||||| |
3' GCCTTTAATGGAGGAGG-AGGGTATCTTGGCC 5'

1719

Triticum aestivum

TATTATGGGACGGAGGGAGTA

alignment

plot

GSM911923

gi|241984777|gb|AK332037.1|AK332037 HTC Triticum aestivum cDNA, clone: WT002_P20, cultivar: Chinese Spring.

2

804

0

2

3

5'     TATTATGGGACGGAGGGAGTA        3'
       o||||| |o||o||o||||||
3' TAATGTAATA-CTTGTCTTCCTCATGTTAGGT 5'

1721

Triticum aestivum

TTAGATGAGAAGGCAGATCATA

alignment

plot

GSM911923

gi|241988983|gb|AK330205.1|AK330205 HTC Triticum aestivum cDNA, clone: SET3_O05, cultivar: Chinese Spring.

2

679

0.03

8

3

5'     TTAGATGAGAAGGCAGATCATA       3'
        |||||||||||| |||||| |
3' AGGATATCTACTCTTCCATCTAGTTTTGATGA 5'

1723

Triticum aestivum

ATTATGGAACGGAGGGAGT

alignment

plot

GSM911923

gi|241987650|gb|AK334907.1|AK334907 HTC Triticum aestivum cDNA, clone: WT011_H08, cultivar: Chinese Spring.

2

1776

0.02

4

1.08333

2

5'     ATTATGGAACGGAGGGAGT          3'
        ||| ||||||||||||||
3' TTATAAAT-CCTTGCCTCCCTCATGTAGGTAT 5'

1725

Triticum aestivum

AGATGTACTCCCTCCGTCCGA

alignment

plot

GSM911923

gi|241983674|gb|AK331616.1|AK331616 HTC Triticum aestivum cDNA, clone: WT007_P05, cultivar: Chinese Spring.

2

5254

0

2

2.5

5'     AGATGTACTCCCTCCGTCCGA        3'
         ||o||||||||||||||||
3' ATGTAGTATATGAGGGAGGCAGGCTTTTTCGA 5'

1727

Triticum aestivum

TTACTCCCTCCGTCCCACAAT

alignment

plot

GSM911923

gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring.

2

1417

0.03

4

3

5'     TTACTCCCTCCGTCCCACAAT        3'
        |||||||||||| ||| |||
3' CATGTATGAGGGAGGCAAGGTTTTATCTACTG 5'

1729

Triticum aestivum

ATACTCCCTCTGTCCCAAATA

alignment

plot

GSM911923

gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring.

2

1417

0.01

4

2.5

5'     ATACTCCCTCTGTCCCAAATA        3'
       ||||||||||o|| ||||| |
3' CATGTATGAGGGAGGCAAGGTTT-TATCTACT 5'

1731

Triticum aestivum

TATATTTTGGGACGGAGGGAG

alignment

plot

GSM911923

gi|241985433|gb|AK332693.1|AK332693 HTC Triticum aestivum cDNA, clone: WT004_K03, cultivar: Chinese Spring.

2

1142

0.01

4

2.5

5'     TATATTTTGGGACGGAGGGAG        3'
        |||||| ||o||||||||||
3' CTGTTTATAAATCCTTGCCTCCCTCATTTTGC 5'

1733

Triticum aestivum

TTTGGGACGGAGGGAGTACTA

alignment

plot

GSM911923

gi|241986678|gb|AK333939.1|AK333939 HTC Triticum aestivum cDNA, clone: WT008_P05, cultivar: Chinese Spring.

2

1801

0

6

3

2.5

5'     TTTGGGACGGAGGGAGTACTA        3'
       || ||o|||||||||||| ||
3' TATAAATCCTTGCCTCCCTCAT-ATACTATGA 5'

1735

Triticum aestivum

TATGGGACGGAGGGAGTATTT

alignment

plot

GSM911923

gi|241986678|gb|AK333939.1|AK333939 HTC Triticum aestivum cDNA, clone: WT008_P05, cultivar: Chinese Spring.

2

1801

0

6

3

2.5

5'     TATGGGACGGAGGGAGTATTT        3'
       || ||o||||||||||||| |
3' ATAAAT-CCTTGCCTCCCTCATATACTATGAT 5'

1737

Triticum aestivum

TCCCTCCGTTCGGAATTACTT

alignment

plot

GSM911923

gi|241985433|gb|AK332693.1|AK332693 HTC Triticum aestivum cDNA, clone: WT004_K03, cultivar: Chinese Spring.

2

1273

0.03

9

2.5

5'     TCCCTCCGTTCGGAATTACTT        3'
       |||||||||||o || |||||
3' GATGAGGGAGGCAAGTATTTATGAACAGAAAG 5'

1739

Triticum aestivum

TTTGTACTCCCTCCGTCCGGA

alignment

plot

GSM911923

gi|241990576|gb|AK330733.1|AK330733 HTC Triticum aestivum cDNA, clone: SET5_C19, cultivar: Chinese Spring.

2

2171

0.04

2

3

5'     TTTGTACTCCCTCCGTCCGGA        3'
       ||||||||||||||||  | |
3' GAGGAAACATGAGGGAGGCATTCATCACTAGA 5'

1741

Triticum aestivum

TGTACTTCCTCCGTCCCAAAA

alignment

plot

GSM911923

gi|241983674|gb|AK331616.1|AK331616 HTC Triticum aestivum cDNA, clone: WT007_P05, cultivar: Chinese Spring.

2

5251

0.01

6

2

5'     TGTACTTCCTCCGTCCCAAAA        3'
       |o||||o||||||||| ||||
3' TAGTATATGAGGGAGGCAGGCTTTTTCGAACA 5'

1743

Triticum aestivum

ACTACTCCCTCCGTTCCTAAA

alignment

plot

GSM911923

gi|241983674|gb|AK331616.1|AK331616 HTC Triticum aestivum cDNA, clone: WT007_P05, cultivar: Chinese Spring.

2

5251

0.05

6

3.5

5'     ACTACTCCCTCCGTTCCTAAA        3'
       | ||||||||||||o|  |||
3' AGTAT-ATGAGGGAGGCAGGCTTTTTCGAACA 5'

1745

Triticum aestivum

AATTATGGAACGGAGGGAGTG

alignment

plot

GSM911923

gi|241986968|gb|AK334229.1|AK334229 HTC Triticum aestivum cDNA, clone: WT009_K22, cultivar: Chinese Spring.

2

1739

0.03

2

2.5

5'     AATTATGGAACGGAGGGAGTG        3'
       | ||| ||||||||||||||o
3' TTCATAAAT-CCTTGCCTCCCTCATATGTAGT 5'

1747

Triticum aestivum

AATTATGGAACGGAGGGAGTA

alignment

plot

GSM911923

gi|241983524|gb|AK331464.1|AK331464 HTC Triticum aestivum cDNA, clone: WT007_J01, cultivar: Chinese Spring.

2

1000

0.02

9

3

5'     AATTATGGAACGGAGGGAGTA        3'
       | ||| |||||| ||||||||
3' AATATAAAT-CCTTGCATCCCTCATAAAACGT 5'

1749

Triticum aestivum

AGATGTACTCCCTCCGTCCGA

alignment

plot

GSM911923

gi|241990523|gb|AK330680.1|AK330680 HTC Triticum aestivum cDNA, clone: SET1_G09, cultivar: Chinese Spring.

2

562

0

6

3

5'    AGAT-GTACTCCCTCCGTCCGA        3'
      |o|| |||||||||||o||||
3' TGTTTTATCATGAGGGAGGTAGGCCTTAATGA 5'

1751

Triticum aestivum

ATAGCATCATCCATCCTACCA

alignment

plot

GSM911923

gi|241987514|gb|AK334771.1|AK334771 HTC Triticum aestivum cDNA, clone: WT011_A02, cultivar: Chinese Spring.

0

1561

0

713

4

5'     ATAGCATCATCCATCCTACCA        3'
       |||||||||||||| |  ||
3' CCTGTATCGTAGTAGGTAAGCCGGGTACGACG 5'

1753

Triticum aestivum

GTACTCCCTCCGTCCTAAAAT

alignment

plot

GSM911923

gi|241983524|gb|AK331464.1|AK331464 HTC Triticum aestivum cDNA, clone: WT007_J01, cultivar: Chinese Spring.

2

1145

0

2

2.5

5'     GTACTCCCTCCGTCCTAAAAT        3'
       o|||||||||||| || ||||
3' TATATATGAGGGAGGCAAGAGTTTATATTCAG 5'

1755

Triticum aestivum

TTTTGGGACGGAGGGAGTATC

alignment

plot

GSM911923

gi|241987650|gb|AK334907.1|AK334907 HTC Triticum aestivum cDNA, clone: WT011_H08, cultivar: Chinese Spring.

2

1775

0.02

7

1.4

3

5'     TTTTGGGACGGAGGGAGTATC        3'
       ||| ||o||||||||||||o
3' TTATAAATCCTTGCCTCCCTCATGTAGGTATG 5'

1757

Triticum aestivum

TCTACTCCCTCCGTTCCTAAA

alignment

plot

GSM911923

gi|241983639|gb|AK331581.1|AK331581 HTC Triticum aestivum cDNA, clone: SET1_J20, cultivar: Chinese Spring.

2

611

0.01

2

2.5

5'     TCTACTCCCTCCGTTCCTAAA        3'
        |o|||||||||||||| |||
3' TTGATGGTGAGGGAGGCAAGGTTTTATCTACT 5'

1759

Triticum aestivum

TTTGGGACGGAGGGAGTACTT

alignment

plot

GSM911923

gi|74013819|gb|DQ118252.1|DQ118252 PLN Triticum aestivum gibberellin 3-oxidase 2-3 (GA3ox2-3) mRNA, complete cds.

0

1274

0

3

3.5

5'     TTTGGGACGGAGGGAGTACTT        3'
       | || ||||||||o|||| ||
3' TATAATACGCTGCCTCCTTCATTAACAAACAT 5'

1761

Triticum aestivum

TTTTGGGACGGAGGGAGTATT

alignment

plot

GSM911923

gi|241983524|gb|AK331464.1|AK331464 HTC Triticum aestivum cDNA, clone: WT007_J01, cultivar: Chinese Spring.

2

998

0

18

9

2.5

5'     TTTTGGGACGGAGGGAGTATT        3'
       ||| ||o||| ||||||||||
3' ATATAAATCCTTGCATCCCTCATAAAACGTCG 5'

1763

Triticum aestivum

GGCGCCGACGATGACGGAGGA

alignment

plot

GSM911923

gi|241985627|gb|AK332888.1|AK332888 HTC Triticum aestivum cDNA, clone: WT005_B24, cultivar: Chinese Spring.

2

364

0.04

3

2.5

5'     GGCGCCGACGATGACGGAGGA        3'
       |||||||||||o||||| ||
3' ACTACCGCGGCTGCTGCTGCCACCACTCGGTC 5'

1765

Triticum aestivum

CATTATGGGACGGAGGGAGTA

alignment

plot

GSM911923

gi|32128647|gb|BT009096.1|BT009096 PLN Triticum aestivum clone wkm2c.pk005.g2:fis, full insert mRNA sequence.

2

803

0.01

4

2.5

5'     CATTATGGGACGGAGGGAGTA        3'
        ||| |||o||||||||||||
3' CTCATTAA-ACCTTGCCTCCCTCATCGTCCTT 5'

1767

Triticum aestivum

TAGCCAAGGATGATTTGCC

alignment

plot

GSM911923

gi|32129093|gb|BT009542.1|BT009542 PLN Triticum aestivum clone wr1.pk0153.c7:fis, full insert mRNA sequence.

0

777

0.01

82

41

2

5'     TAGCCAAGGATGATTTGCC          3'
        |||||||||||| |||||
3' TTATTTCGGTTCCTACTCAACGGACTGGTGTG 5'

1769

Triticum aestivum

GTACTCCCTCCGTCCCATAAT

alignment

plot

GSM911923

gi|241988536|gb|AK335793.1|AK335793 HTC Triticum aestivum cDNA, clone: WT013_M16, cultivar: Chinese Spring.

2

968

0.04

2

3.5

5'     GTACTCCCTCCGTCCCATAAT        3'
       o|||||||||||| | ||||
3' CATATATGAGGGAGGCAAG-TATTTGTTCACT 5'

1771

Triticum aestivum

ATACTCCCTCCGTCCCATAAT

alignment

plot

GSM911923

gi|241988536|gb|AK335793.1|AK335793 HTC Triticum aestivum cDNA, clone: WT013_M16, cultivar: Chinese Spring.

2

968

0.01

2

3

5'     ATACTCCCTCCGTCCCATAAT        3'
       ||||||||||||| ||||||
3' CATATATGAGGGAGGCAAGGTATTTTTCACTG 5'

1773

Triticum aestivum

TTTTGGAACGGAGGGAGTAGT

alignment

plot

GSM911923

gi|241986968|gb|AK334229.1|AK334229 HTC Triticum aestivum cDNA, clone: WT009_K22, cultivar: Chinese Spring.

2

1737

0

2

5'     TTTTGGAACGGAGGGAGTAGT        3'
       ||| ||||||||||||||| |
3' TCATAAATCCTTGCCTCCCTCAT-ATGTAGTT 5'

1775

Triticum aestivum

TTGTCGCAGAAATGGATGTATCTA

alignment

plot

GSM911924

gi|241990229|gb|AK330571.1|AK330571 HTC Triticum aestivum cDNA, clone: SET4_M12, cultivar: Chinese Spring.

2

182

0

3

2.5

5'     TTGTCGCAGAAATGGATGTATCTA     3'
       |||||| |||||||o|||||| ||
3' AATGAACAGCATCTTTACTTACATAAATTTAC 5'

1777

Triticum aestivum

TATTATGGGACGGAGGGAGTA

alignment

plot

GSM911924

gi|241987784|gb|AK335041.1|AK335041 HTC Triticum aestivum cDNA, clone: WT011_O10, cultivar: Chinese Spring.

1

1609

0

4

2.5

5'     TATTATGGGACGGAGGGAGTA        3'
       |||| ||o||| |||||||||
3' GAATATAAAACTCTGGCTCCCTCATGGATGGT 5'

1779

Triticum aestivum

CGGTTGGGCTGTATGATGGCGA

alignment

plot

GSM911924

gi|21736|gb|X07780.1|X07780 PLN Wheat mRNA for fructose-1,6-bisphosphatase (EC 3.1.3.11).

2

677

0.02

6

3

5'     CGGTTGGGCTGTATGATGGCGA       3'
       ||| ||||||||| |||| |||
3' AGCAGCCTACCCGACAT-CTACGGCTTCTACC 5'

1781

Triticum aestivum

TATTTCTTTACAGAGGGACTA

alignment

plot

GSM911924

gi|241987307|gb|AK334564.1|AK334564 HTC Triticum aestivum cDNA, clone: WT010_E24, cultivar: Chinese Spring.

2

1925

0.02

3

5'     TATTTCTTTACAGAGGGACTA        3'
       o|||||o||||| ||| ||||
3' TTATGTAAAGGAATGTGTCC-TGATATATTAT 5'

1783

Triticum aestivum

AACATACTCCCTCCGTCCGGA

alignment

plot

GSM911924

gi|241986513|gb|AK333774.1|AK333774 HTC Triticum aestivum cDNA, clone: WT008_C24, cultivar: Chinese Spring.

2

1203

0.04

2

3.5

5'     AACATACTCCCTCCG-TCCGGA       3'
       ||||||||||||| | | ||o|
3' GTAGTTGTATGAGGGAGTCTACGCTTTCGAAT 5'

1785

Triticum aestivum

TAGCCAAGGATGATTTGCCT

alignment

plot

GSM911924

gi|45861200|gb|AY568297.1|AY568297 PLN Triticum aestivum CCAAT-box transcription factor complex WHAP3 (WHAP3) mRNA, complete cds

0

824

0

263

33.8132

2

5'     TAGCCAAGGATGATTTGCCT         3'
        ||||||||||||||||| |
3' TGTATTCGGTTCCTACTAAACG-ACCCCCGTT 5'

1787

Triticum aestivum

AGCCAAGGATGATTTGCCTG

alignment

plot

GSM911924

gi|45861200|gb|AY568297.1|AY568297 PLN Triticum aestivum CCAAT-box transcription factor complex WHAP3 (WHAP3) mRNA, complete cds

2

823

0

3

0.230769

1

5'     AGCCAAGGATGATTTGCCTG         3'
       ||||||||||||||||| ||
3' GTATTCGGTTCCTACTAAACG-ACCCCCGTTT 5'

1789

Triticum aestivum

TAGCCAAGGATGATTTGCC

alignment

plot

GSM911924

gi|32129063|gb|BT009512.1|BT009512 PLN Triticum aestivum clone wr1.pk0094.f2:fis, full insert mRNA sequence.

2

658

0

263

33.8132

1

5'     TAGCCAAGGATGATTTGCC          3'
        ||||||||||||||||||
3' TGTATTCGGTTCCTACTAAACGGTCCCCCGTT 5'

1791

Triticum aestivum

TGATTGAGCCGTGCCAATAT

alignment

plot

GSM911924

gi|241986925|gb|AK334186.1|AK334186 HTC Triticum aestivum cDNA, clone: WT009_E16, cultivar: Chinese Spring.

2

1190

0

414

0.5

5'     TGATTGAGCCGTGCCAATAT         3'
       |||||||||||o||||||||
3' GACCACTAACTCGGCGCGGTTATAGAGTGCGC 5'

1793

Triticum aestivum

AGAGCAGGTACAATGGCAGGC

alignment

plot

GSM911924

gi|241983718|gb|AK331660.1|AK331660 HTC Triticum aestivum cDNA, clone: WT002_A21, cultivar: Chinese Spring.

2

812

0.01

29

14.5

2.5

5'    AGAG-CAGGTACAATGGCAGGC        3'
      |||| |||||||||||| |o||
3' ATCTCTCAGTCCATGTTACCCTTCGTGGGCTA 5'

1795

Triticum aestivum

TAGCCAAGGATGATTTGCC

alignment

plot

GSM911924

gi|45861204|gb|AY568299.1|AY568299 PLN Triticum aestivum CCAAT-box transcription factor complex WHAP5 (WHAP5) mRNA, complete cds

0

823

0

263

33.8132

1

5'     TAGCCAAGGATGATTTGCC          3'
        ||||||||||||||||||
3' TGTATTCGGTTCCTACTAAACGGCCCCCGTTT 5'

1797

Triticum aestivum

ATGTGTCACTGAAATGTGGGC

alignment

plot

GSM911924

gi|241983873|gb|AK331815.1|AK331815 HTC Triticum aestivum cDNA, clone: WT002_G20, cultivar: Chinese Spring.

0

2096

0

28

4

5'     ATGTGTCACTGAAATGTGGGC        3'
       | |||||||||| |oo||oo|
3' ATTGT-CACAGTGACTCTGTACTTGTTCTTTC 5'

1799

Triticum aestivum

AGAATCCTGATGATGCTGCAG

alignment

plot

GSM911924

gi|52854305|gb|AY645945.1|AY645945 PLN Triticum aestivum floral homeotic protein (Q) mRNA, complete cds.

2

1374

0

12

6

0.5

5'     AGAATCCTGATGATGCTGCAG        3'
       |o|||||||||||||||||||
3' CATCTTTTAGGACTACTACGACGTCGCATTTC 5'

1801

Triticum aestivum

CTCCGTCCCAAAATATAAGAA

alignment

plot

GSM911924

gi|241986094|gb|AK333355.1|AK333355 HTC Triticum aestivum cDNA, clone: WT006_E09, cultivar: Chinese Spring.

2

825

0.02

2

3

5'     CTCCGTCCCAAAATATAAGAA        3'
       ||| |||||| |||||||||
3' GAGAGAGACAGGGTATTATATTCTCGTAAAAA 5'

1803

Triticum aestivum

GCTCCCTCCGTCCCATAATAT

alignment

plot

GSM911924

gi|32128860|gb|BT009309.1|BT009309 PLN Triticum aestivum clone wlm1.pk0020.e5:fis, full insert mRNA sequence.

2

295

0.02

2

1

3

5'     GCTCCCTCCGTCCCATAATAT        3'
        |||||||||| |||||| ||
3' GTATAGAGGGAGGCACGGTATTCTAGCTACTT 5'

1805

Triticum aestivum

TATTATGGGACGGAGGGAGTA

alignment

plot

GSM911924

gi|241985236|gb|AK332496.1|AK332496 HTC Triticum aestivum cDNA, clone: WT004_B23, cultivar: Chinese Spring.

2

2706

0

5

0.5

5'     TATTATGGGACGGAGGGAGTA        3'
       |||||||||||o|||||||||
3' GAATATAATACCCTGTCTCCCTCATGTATACT 5'

1807

Triticum aestivum

CCGGACCAGGCTTCATTCCCA

alignment

plot

GSM911924

gi|241983944|gb|AK331886.1|AK331886 HTC Triticum aestivum cDNA, clone: WT002_J20, cultivar: Chinese Spring.

0

964

0

3115

1

5'     CCGGACCAGGCTTCATTCCCA        3'
       |||||||||||||||| ||||
3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAGC 5'

1809

Triticum aestivum

AGCCAAGGATGATTTGCCTG

alignment

plot

GSM911924

gi|32128614|gb|BT009063.1|BT009063 PLN Triticum aestivum clone wds1f.pk002.p21:fis, full insert mRNA sequence.

2

1144

0

2

0.5

5'     AGCCAAGGATGATTTGCCTG         3'
       |||||||o||||||||||||
3' CATCTCGGTTCTTACTAAACGGACGTCTGTTG 5'

1811

Triticum aestivum

TTGTCGCAGGTATGGGTGTAT

alignment

plot

GSM911924

gi|241983270|gb|AK331210.1|AK331210 HTC Triticum aestivum cDNA, clone: SET6_M12, cultivar: Chinese Spring.

2

525

0.05

8

4

3

5'     TTGTCGCAGGTATGGGTGTAT        3'
       o||||||||| ||||o|| ||
3' AAATGACAGCGTCCCTACCTACTTACGAGTAT 5'

1813

Triticum aestivum

AATTATGGAACGGAGGGAGTA

alignment

plot

GSM911924

gi|241989722|gb|AK330263.1|AK330263 HTC Triticum aestivum cDNA, clone: SET4_A13, cultivar: Chinese Spring.

2

3328

0.02

22

3

5'     AATTATGGAACGGAGGGAGTA        3'
       | ||| |||||||||| ||||
3' AATATAAAT-CCTTGCCTCCGTCATCTTTCGT 5'

1815

Triticum aestivum

TAGCCAAGGATGATTTGCC

alignment

plot

GSM911924

gi|32129145|gb|BT009594.1|BT009594 PLN Triticum aestivum clone wre1n.pk0066.e4:fis, full insert mRNA sequence.

0

906

0

243

121.5

2

5'     TAGCCAAGGATGATTTGCC          3'
        |||||||||||| |||||
3' AGTATTCGGTTCCTACTTAACGGTGGCCGTCG 5'

1817

Triticum aestivum

GTTACTCCCTCCGTTCCTAAA

alignment

plot

GSM911924

gi|241988323|gb|AK335581.1|AK335581 HTC Triticum aestivum cDNA, clone: WT013_E07, cultivar: Chinese Spring.

2

1362

0.05

2

3.5

5'     GTTACTCCCTCCGTTCCTAAA        3'
       | ||||||||||||o|  |||
3' GAAACCATGAGGGAGGCAGGCCTTTATGAACA 5'

1819

Triticum aestivum

TTTGGGACGGAGGGAGTACTA

alignment

plot

GSM911924

gi|241988219|gb|AK335477.1|AK335477 HTC Triticum aestivum cDNA, clone: WT012_P23, cultivar: Chinese Spring.

2

928

0.03

12

2.4

3

5'     TTTGGGACGGAGGGAGTACTA        3'
       || ||o|||||||o|||| ||
3' TATAAATCCTTGCCTCCTTCAT-ATACAATTA 5'

1821

Triticum aestivum

TATGGGACGGAGGGAGTATTT

alignment

plot

GSM911924

gi|241988219|gb|AK335477.1|AK335477 HTC Triticum aestivum cDNA, clone: WT012_P23, cultivar: Chinese Spring.

2

928

0.03

12

2.4

3

5'     TATGGGACGGAGGGAGTATTT        3'
       || ||o|||||||o||||| |
3' ATAAAT-CCTTGCCTCCTTCATATACAATTAC 5'

1823

Triticum aestivum

TTTTGGAACGGAGGGAGTA

alignment

plot

GSM911924

gi|241989722|gb|AK330263.1|AK330263 HTC Triticum aestivum cDNA, clone: SET4_A13, cultivar: Chinese Spring.

2

3326

0.03

52

26

2

5'     TTTTGGAACGGAGGGAGTA          3'
       ||| |||||||||| ||||
3' ATATAAATCCTTGCCTCCGTCATCTTTCGTGG 5'

1825

Triticum aestivum

CACTATATTTTGGAATGGAGGGA

alignment

plot

GSM911924

gi|241989266|gb|AK336244.1|AK336244 HTC Triticum aestivum cDNA, clone: SET3_J09, cultivar: Chinese Spring.

2

1038

0.01

2

3

5'     CACTATATTTTGGAATGGAGGGA      3'
       |||| ||||||||| oo||||||
3' TGCTGTGA-ATAAAACCTGGTCTCCCTCATTA 5'

1827

Triticum aestivum

ACATTGTGGGACGGAGGGAGT

alignment

plot

GSM911924

gi|241990850|gb|AK331006.1|AK331006 HTC Triticum aestivum cDNA, clone: SET5_N13, cultivar: Chinese Spring.

2

2141

0.04

2

3

5'     ACATTGTGGGACGGAGGGAGT        3'
       |||||o|||| |||||o |||
3' AGAATGTAATACCCGGCCTCTATCATGAACTC 5'

1829

Triticum aestivum

TTTTGGGACGGAGGGAGTATT

alignment

plot

GSM911924

gi|241988462|gb|AK335720.1|AK335720 HTC Triticum aestivum cDNA, clone: WT013_J19, cultivar: Chinese Spring.

2

3336

0.02

2

2.5

5'     TTTTGGGACGGAGGGAGTATT        3'
       |||| ||||||||||||||o
3' TCATAAAAGCCTGCCTCCCTCATGTTTGAAAA 5'

1831

Triticum aestivum

TTTGGGACGGAGGGAGTACTT

alignment

plot

GSM911924

gi|241986137|gb|AK333398.1|AK333398 HTC Triticum aestivum cDNA, clone: WT006_G02, cultivar: Chinese Spring.

2

2646

0

4

2.5

5'     TTTGGGACGGAGGGAGTACTT        3'
       ||||||||||||| |o||| |
3' CTTAAAACCCTGCCTCCATTATGTAATGTAAT 5'

1833

Triticum aestivum

TTTTGGAACGGAGGGAGTAGT

alignment

plot

GSM911924

gi|241988219|gb|AK335477.1|AK335477 HTC Triticum aestivum cDNA, clone: WT012_P23, cultivar: Chinese Spring.

2

929

0.01

31

6.5

2.5

5'     TTTTGGAACGGAGGGAGTAGT        3'
       ||| ||||||||||o|||| |
3' TTATAAATCCTTGCCTCCTTCAT-ATACAATT 5'

1835

Triticum aestivum

TTTTGGTACAGAGGGAGTATT

alignment

plot

GSM911924

gi|241983592|gb|AK331534.1|AK331534 HTC Triticum aestivum cDNA, clone: WT007_L23, cultivar: Chinese Spring.

2

462

0.01

2

2.5

5'     TTTTGGTACAGAGGGAGTATT        3'
       |||||| |||||oo||||||o
3' GAGGAAAACCTTGTCTTTCTCATAGAGACTTA 5'

1837

Triticum aestivum

GTACTCCCTCCGTCCTAAAAT

alignment

plot

GSM911924

gi|241985579|gb|AK332840.1|AK332840 HTC Triticum aestivum cDNA, clone: WT005_A03, cultivar: Chinese Spring.

2

1698

0.02

2

3

5'     GTACTCCCTCCGTCCTAAAAT        3'
       |||||||||||o| |o||| |
3' GAAACATGAGGGAGGTAAGGTTTCAATCATAT 5'

1839

Triticum aestivum

TTGGAGTGAAGGGAGCTCCA

alignment

plot

GSM911924

gi|241989307|gb|AK336285.1|AK336285 HTC Triticum aestivum cDNA, clone: SET3_K24, cultivar: Chinese Spring.

0

861

0.01

11

4

5'     TTGGAGTGAAGGGAGCTCCA         3'
       ||||| ||||| | |||||
3' CCACAACCTGACTTCACACGAGGACAGCTTCC 5'

1841

Triticum aestivum

TGCGACAAGTAATTCCGAACGGA

alignment

plot

GSM911924

gi|42391852|gb|AB161682.1|AB161682 PLN Triticum aestivum WCSP2 mRNA for cold shock domain protein 2, complete cds.

2

878

0.03

26

13

4

5'    TGCGACAAG-TAATTCCGAACGGA      3'
      oo||||||| |||o| ||||||o|
3' GCTGTGCTGTTCTATTGAAGCTTGCTTGTTAT 5'

1843

Triticum aestivum

TCCGGAGGGATTCCCTCCTTG

alignment

plot

GSM911924

gi|21815|gb|X56803.1|X56803 PLN T.aestivum L. mRNA for ubiquitin.

2

109

0.02

31

7.75

2.5

5'     TCCGGAGGGATTCCCTCCTTG        3'
       ||||| ||o|| |||||||||
3' GACCAGGCCCCCTTACGGGAGGAACAGGACCT 5'

1845

Triticum aestivum

ATTATGGGGCGGAGGGAGT

alignment

plot

GSM911924

gi|241987774|gb|AK335031.1|AK335031 HTC Triticum aestivum cDNA, clone: WT011_N19, cultivar: Chinese Spring.

2

2869

0

2

1.5

5'     ATTATGGGGCGGAGGGAGT          3'
       ||| ||||o||||||||||
3' TGAATAAAACCCTGCCTCCCTCATGATGTATG 5'

1847

Triticum aestivum

TTTGGGACGGAGGGAGTACTA

alignment

plot

GSM911924

gi|32128877|gb|BT009326.1|BT009326 PLN Triticum aestivum clone wlm24.pk0016.f9:fis, full insert mRNA sequence.

2

1877

0.01

12

2.4

2.5

5'     TTTGGGACGGAGGGAGTACTA        3'
       || ||o||||| |||||||||
3' TATAAATCCTTGCCTACCTCATGATGTCTGAC 5'

1849

Triticum aestivum

CACTATATTTTGGAATGGAGGGA

alignment

plot

GSM911924

gi|241989190|gb|AK336169.1|AK336169 HTC Triticum aestivum cDNA, clone: SET3_G10, cultivar: Chinese Spring.

2

1859

0

2

2.5

5'     CACTATATTTTGGAATGGAGGGA      3'
       || | ||||||o|||||||||||
3' CTCAGT-AGATAAAATCTTACCTCCCTCATGT 5'

1851

Triticum aestivum

ACTCCCTCCATCCCATAATAT

alignment

plot

GSM911924

gi|241989169|gb|AK336148.1|AK336148 HTC Triticum aestivum cDNA, clone: SET3_F15, cultivar: Chinese Spring.

2

1211

0

2

1

5'     ACTCCCTCCATCCCATAATAT        3'
       ||||||||||||||| |||||
3' ATTATGAGGGAGGTAGGGTTTTATATTCTTAC 5'

1853

Triticum aestivum

TATGGGACGGAGGGAGTAGTA

alignment

plot

GSM911924

gi|32129003|gb|BT009452.1|BT009452 PLN Triticum aestivum clone wlmk8.pk0022.f7:fis, full insert mRNA sequence.

2

791

0

12

2.4

1.5

5'     TATGGGACGGAGGGAGTAGTA        3'
       || ||o|||||||||||||||
3' ATAAAT-CCTTGCCTCCCTCATCATCTATCTC 5'

1855

Triticum aestivum

AACATACTCCCTCCGTCCGGA

alignment

plot

GSM911924

gi|1754996|gb|U48690.1|U48690 PLN Triticum aestivum calmodulin TaCaM2-1 mRNA, complete cds.

2

958

0.01

2

1

3

5'     AACATACTCCCTCCGT-CCGGA       3'
       ||||||||||||||o| ||o |
3' GATGTTGTATGAGGGAGGTAAGGTATTACATC 5'

1857

Triticum aestivum

TTTTGGGACGGAGGGAGTATT

alignment

plot

GSM911924

gi|241985579|gb|AK332840.1|AK332840 HTC Triticum aestivum cDNA, clone: WT005_A03, cultivar: Chinese Spring.

2

1655

0

6

3

1.5

5'     TTTTGGGACGGAGGGAGTATT        3'
       ||||||o|||||||||||| |
3' AGATAAAACCTTGCCTCCCTCATCAATAGTCC 5'

1859

Triticum aestivum

ACATTATGGAACGGAGGGAGT

alignment

plot

GSM911924

gi|241983701|gb|AK331643.1|AK331643 HTC Triticum aestivum cDNA, clone: WT002_A06, cultivar: Chinese Spring.

2

866

0.02

2

2.5

5'     ACATTATGGAACGGAGGGAGT        3'
       |||| | |||||o||||||||
3' GGAATGTACTTCCTTGTCTCCCTCATACATTG 5'

1861

Triticum aestivum

TGACATGGTTGGCCCATGGAA

alignment

plot

GSM911924

gi|241988316|gb|AK335574.1|AK335574 HTC Triticum aestivum cDNA, clone: WT013_E02, cultivar: Chinese Spring.

2

3331

0

2

0

5'     TGACATGGTTGGCCCATGGAA        3'
       |||||||||||||||||||||
3' CGGTACTGTACCAACCGGGTACCTTAGGCATC 5'

1863

Triticum aestivum

GCTACTTCCTCCGTCCGAAAA

alignment

plot

GSM911924

gi|32128634|gb|BT009083.1|BT009083 PLN Triticum aestivum clone wkm1c.pk0004.c7:fis, full insert mRNA sequence.

2

977

0

5

2.5

5'     GCTACTTCCTCCGTCCGAAAA        3'
       o|||||o|||||o|||| |||
3' TCGATGATGAGGGAGGTAGGCCTTTATGGACA 5'

1865

Triticum aestivum

TTTTGGGACGGAGGGAGTATT

alignment

plot

GSM911924

gi|32129003|gb|BT009452.1|BT009452 PLN Triticum aestivum clone wlmk8.pk0022.f7:fis, full insert mRNA sequence.

2

792

0.01

25

5

2.5

5'     TTTTGGGACGGAGGGAGTATT        3'
       ||| ||o|||||||||||| |
3' TTATAAATCCTTGCCTCCCTCATCATCTATCT 5'

1867

Triticum aestivum

TATATACTTCCTCCGTCCGGA

alignment

plot

GSM911924

gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring.

2

1420

0.03

5

3

5'     TATATACTTCCTCCGT-CCGGA       3'
       ||o|||||o||||||| ||oo|
3' TTTCATGTATGAGGGAGGCAAGGTTTTATCTA 5'

1869

Triticum aestivum

TCCGGAGGGATTCCCTCCTTG

alignment

plot

GSM911924

gi|126544299|gb|AY297059.2|AY297059 PLN Triticum aestivum ubiquitin (WUB1) mRNA, complete cds.

2

107

0

247

49.4

2.5

5'     TCCGGAGGGATTCCCTCCTTG        3'
       ||||| ||o|| |||||||||
3' GACCAGGCCCCCTTACGGGAGGAACAGGACCT 5'

1871

Triticum aestivum

TTTTGGTACAGAGGGAGTATT

alignment

plot

GSM911924

gi|241988505|gb|AK335763.1|AK335763 HTC Triticum aestivum cDNA, clone: WT013_L12, cultivar: Chinese Spring.

1

2446

0

2

4

5'     TTTTGGTACAGAGGGAGTATT        3'
       |||||| |||| ||||||  |
3' GTCTAAAACC-TGTCACCCTCAATAGGTGAGT 5'

1873

Triticum aestivum

TTTTGGGACAGAGGGAGTATA

alignment

plot

GSM911924

gi|241988505|gb|AK335763.1|AK335763 HTC Triticum aestivum cDNA, clone: WT013_L12, cultivar: Chinese Spring.

1

2446

0.01

2

4

5'     TTTTGGGACAGAGGGAGTATA        3'
        ||| |||||| |||||| ||
3' AGTCTAAAACCTGTCACCCTCA-ATAGGTGAG 5'

1875

Triticum aestivum

ATAGATGAGAAGGTAGATCAA

alignment

plot

GSM911924

gi|241986778|gb|AK334039.1|AK334039 HTC Triticum aestivum cDNA, clone: WT008_P02, cultivar: Chinese Spring.

2

633

0.01

3

2

5'     ATAGATGAGAAGGTAGATCAA        3'
       |||||||| |||||||||| |
3' AGGATATCTACTGTTCCATCTAGCTTTGATTA 5'

1877

Triticum aestivum

ACTACTCCCTCCGTTCCTAAA

alignment

plot

GSM911924

gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring.

2

1418

0

13

2

5'     ACTACTCCCTCCGTTCCTAAA        3'
       | ||||||||||||||| |||
3' CATGT-ATGAGGGAGGCAAGGTTTTATCTACT 5'

1879

Triticum aestivum

TTTGGGACGGAGGGAGTACTT

alignment

plot

GSM911924

gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring.

2

1349

0.01

9

4.5

2.5

5'     TTTGGGACGGAGGGAGTACTT        3'
       |||||o|||||||||||||
3' GATAAAACCTTGCCTCCCTCATGCTTTTAGTG 5'

1881

Triticum aestivum

TGCAGTTGCTGTCTCAAGCTT

alignment

plot

GSM911924

gi|161158849|gb|AM502905.1|AM502905 PLN Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM32B (WM32B gene).

1

330

0

2

1

0.5

5'     TGCAGTTGCTGTCTCAAGCTT        3'
       |||||||||||o|||||||||
3' CAGCACGTCAACGACGGAGTTCGAACGACGGA 5'

1883

Triticum aestivum

TGAGAAGGTAGATCATAATAGC

alignment

plot

GSM911924

gi|241988983|gb|AK330205.1|AK330205 HTC Triticum aestivum cDNA, clone: SET3_O05, cultivar: Chinese Spring.

2

674

0.05

5

3

5'     TGAGAAGGTAGATCATAATAGC       3'
       ||||||||||||||| ||o o|
3' ATCTACTCTTCCATCTAGTTTTGATGACTATT 5'

1885

Triticum aestivum

CGTCGAGGAGGAGCTCGAGTG

alignment

plot

GSM911924

gi|241983622|gb|AK331564.1|AK331564 HTC Triticum aestivum cDNA, clone: WT007_N04, cultivar: Chinese Spring.

0

846

0.01

16

4

5'     CGTCGAGGAGGAGCTCGAGTG        3'
        || ||||||||||| ||| |
3' GCGTCCA-CTCCTCCTCGACCTCCCGCTCCCC 5'

1887

Triticum aestivum

ATTATGGGACGGAGGGAGT

alignment

plot

GSM911924

gi|241987650|gb|AK334907.1|AK334907 HTC Triticum aestivum cDNA, clone: WT011_H08, cultivar: Chinese Spring.

2

1776

0.05

4

1

2.5

5'     ATTATGGGACGGAGGGAGT          3'
        ||| ||o|||||||||||
3' TTATAAAT-CCTTGCCTCCCTCATGTAGGTAT 5'

1889

Triticum aestivum

TTACTCCCTCCGTCCCACAAT

alignment

plot

GSM911924

gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring.

2

1417

0.02

4

3

5'     TTACTCCCTCCGTCCCACAAT        3'
        |||||||||||| ||| |||
3' CATGTATGAGGGAGGCAAGGTTTTATCTACTG 5'

1891

Triticum aestivum

ATACTCCCTCTGTCCCAAATA

alignment

plot

GSM911924

gi|241985483|gb|AK332744.1|AK332744 HTC Triticum aestivum cDNA, clone: WT004_M05, cultivar: Chinese Spring.

2

1417

0

4

2.5

5'     ATACTCCCTCTGTCCCAAATA        3'
       ||||||||||o|| ||||| |
3' CATGTATGAGGGAGGCAAGGTTT-TATCTACT 5'

1893

Triticum aestivum

TAGATACCTCCGTATCTAGAC

alignment

plot

GSM911924

gi|241987805|gb|AK335062.1|AK335062 HTC Triticum aestivum cDNA, clone: WT011_P12, cultivar: Chinese Spring.

2

1855

0.04

2

3.5

5'     TAGATACCTCCGTATCTAGAC        3'
       ||o|o||||||o  |||||||
3' TGTTATTTGTGGAGGTTCAGATCTGTCTATTT 5'

1895

Triticum aestivum

TATGGGACGGAGGGAGTATTT

alignment

plot

GSM911924

gi|241987650|gb|AK334907.1|AK334907 HTC Triticum aestivum cDNA, clone: WT011_H08, cultivar: Chinese Spring.

2

1774

0.02

12

2.4

3

5'     TATGGGACGGAGGGAGTATTT        3'
       || ||o||||||||||||o |
3' ATAAAT-CCTTGCCTCCCTCATGTAGGTATGT 5'

1897

Triticum aestivum

AGATGTACTCCCTCCGTCCGA

alignment

plot

GSM911924

gi|241983674|gb|AK331616.1|AK331616 HTC Triticum aestivum cDNA, clone: WT007_P05, cultivar: Chinese Spring.

2

5254

0

3

2.5

5'     AGATGTACTCCCTCCGTCCGA        3'
         ||o||||||||||||||||
3' ATGTAGTATATGAGGGAGGCAGGCTTTTTCGA 5'

1899

Triticum aestivum

TTTGGGACGGAGGGAGTACAT

alignment

plot

GSM911924

gi|241986678|gb|AK333939.1|AK333939 HTC Triticum aestivum cDNA, clone: WT008_P05, cultivar: Chinese Spring.

2

1801

0

17

8.5

2.5

5'     TTTGGGACGGAGGGAGTACAT        3'
       || ||o|||||||||||| ||
3' TATAAATCCTTGCCTCCCTCATATACTATGAT 5'

1901

Triticum aestivum

TATTTGTTTACAGAGGGAGTT

alignment

plot

GSM911924

gi|241988346|gb|AK335604.1|AK335604 HTC Triticum aestivum cDNA, clone: WT013_F06, cultivar: Chinese Spring.

2

2379

0.02

8

2

5'     TATTTGTTTACAGAGGGAGTT        3'
       |||| |||||||||||||||
3' GAATATAATCAAATGTCTCCCTCATTATGCGT 5'

1903

Triticum aestivum

TATATTTTGGGACGGAGGGAG

alignment

plot

GSM911924

gi|241985433|gb|AK332693.1|AK332693 HTC Triticum aestivum cDNA, clone: WT004_K03, cultivar: Chinese Spring.

2

1142

0.01

3

2.5

5'     TATATTTTGGGACGGAGGGAG        3'
        |||||| ||o||||||||||
3' CTGTTTATAAATCCTTGCCTCCCTCATTTTGC 5'

1905

Triticum aestivum

TGTACTTCCTCCGTCCCAAAA

alignment

plot

GSM911924

gi|241983674|gb|AK331616.1|AK331616 HTC Triticum aestivum cDNA, clone: WT007_P05, cultivar: Chinese Spring.

2

5251

0

16

2

5'     TGTACTTCCTCCGTCCCAAAA        3'
       |o||||o||||||||| ||||
3' TAGTATATGAGGGAGGCAGGCTTTTTCGAACA 5'

1907

Triticum aestivum

ACTACTCCCTCCGTTCCTAAA

alignment

plot

GSM911924

gi|241983674|gb|AK331616.1|AK331616 HTC Triticum aestivum cDNA, clone: WT007_P05, cultivar: Chinese Spring.

2

5251

0.01

16

3.5

5'     ACTACTCCCTCCGTTCCTAAA        3'
       | ||||||||||||o|  |||
3' AGTAT-ATGAGGGAGGCAGGCTTTTTCGAACA 5'

1909

Triticum aestivum

TAGATACATCCGTATGTAGAC

alignment

plot

GSM911924

gi|241985433|gb|AK332693.1|AK332693 HTC Triticum aestivum cDNA, clone: WT004_K03, cultivar: Chinese Spring.

2

1188

0.04

7

3.5

3

5'     TAGATACATCCGTATGTAGAC        3'
       || ||||||||||||||||
3' ACAGATGTATGTAGGCATACATCATCAGTAAA 5'

1911

Triticum aestivum

TTATTTTGGGACGGAGGGAGT

alignment

plot

GSM911924

gi|241990551|gb|AK330708.1|AK330708 HTC Triticum aestivum cDNA, clone: SET5_B19, cultivar: Chinese Spring.

2

3220

0.03

2

1

2.5

5'     TTATTTTGGGACGGAGGGAGT        3'
        |||||||||||o| ||||||
3' AGAATATAAAACCCTGTCCCCCTCATCGTCTG 5'

1913

Triticum aestivum

TTTTGGGACGGAGGGAGTATT

alignment

plot

GSM911924

gi|241987650|gb|AK334907.1|AK334907 HTC Triticum aestivum cDNA, clone: WT011_H08, cultivar: Chinese Spring.

2

1775

0.03

31

6.5

3

5'     TTTTGGGACGGAGGGAGTATT        3'
       ||| ||o||||||||||||o
3' TTATAAATCCTTGCCTCCCTCATGTAGGTATG 5'

1915

Triticum aestivum

ATAGCATCATCCATCCTACCA

alignment

plot

GSM911924

gi|241989083|gb|AK336062.1|AK336062 HTC Triticum aestivum cDNA, clone: SET3_C06, cultivar: Chinese Spring.

0

619

0

32

4

5'     ATAGCATCATCCATC-CTACCA       3'
       || |||||||||||| | |||
3' TTTGTAACGTAGTAGGTAGTGTTGGAGGTTTG 5'

1917

Triticum aestivum

GTACTCCCTCCGTCCTAAAAT

alignment

plot

GSM911924

gi|241983674|gb|AK331616.1|AK331616 HTC Triticum aestivum cDNA, clone: WT007_P05, cultivar: Chinese Spring.

2

5250

0.02

3

2.5

5'     GTACTCCCTCCGTCCTAAAAT        3'
       o|||||||||||||| ||||
3' AGTATATGAGGGAGGCAGGCTTTTTCGAACAG 5'

1919

Triticum aestivum

GATACTCCCTCCGTTCCTAAA

alignment

plot

GSM911924

gi|241987616|gb|AK334873.1|AK334873 HTC Triticum aestivum cDNA, clone: WT011_F13, cultivar: Chinese Spring.

2

2292

0.02

2

3

5'     GATACTCCCTCCGTTCCTAAA        3'
       o||||||| |||||o|| |||
3' CGCTTTATGAGGTAGGCAGGGTTTTATCGAAC 5'

1921

Triticum aestivum

TACTCCCTCCATCCCAAAATA

alignment

plot

GSM911924

gi|241990523|gb|AK330680.1|AK330680 HTC Triticum aestivum cDNA, clone: SET1_G09, cultivar: Chinese Spring.

2

557

0.03

5

3

5'     TACTCCCTCCATCCCAAAATA        3'
       ||||||||||||||  || ||
3' TATCATGAGGGAGGTAGGCCTTAATGAACAGC 5'

1923

Triticum aestivum

TAGTGATCTAAACACTCTTA

alignment

plot

GSM911924

gi|241987799|gb|AK335056.1|AK335056 HTC Triticum aestivum cDNA, clone: WT011_P07, cultivar: Chinese Spring.

0

1651

0

7

4

5'     TAGTGATCTAAACACTCTTA         3'
       o|o|| ||o||||| ||o||
3' ACGCGTTACAAGGTTTGT-AGGATCTGTTGTT 5'

1925

Triticum aestivum

TTTTGGGACGGAGGGAGTACA

alignment

plot

GSM911924

gi|241985433|gb|AK332693.1|AK332693 HTC Triticum aestivum cDNA, clone: WT004_K03, cultivar: Chinese Spring.

2

1138

0.01

31

6.5

2.5

5'     TTTTGGGACGGAGGGAGTACA        3'
       ||| ||o|||||||||||| |
3' TTATAAATCCTTGCCTCCCTCATTTTGCGTTT 5'

1927

Triticum aestivum

TAGTACAAAGTTGAGTCATC

alignment

plot

GSM911924

gi|241985398|gb|AK332658.1|AK332658 HTC Triticum aestivum cDNA, clone: SET1_N24, cultivar: Chinese Spring.

0

1012

0.01

18

4

5'     TAGTACAAAGTTGAGTCATC         3'
        ||| ||||||| |oo||||
3' GGTTTTCA-GTTTCAAGTTGGTAGGTCTGGAT 5'

1929

Triticum aestivum

TTTTGGGACGGAGGGAGTATT

alignment

plot

GSM911924

gi|241986968|gb|AK334229.1|AK334229 HTC Triticum aestivum cDNA, clone: WT009_K22, cultivar: Chinese Spring.

2

1737

0.04

9

2.5

5'     TTTTGGGACGGAGGGAGTATT        3'
       ||| ||o|||||||||||||
3' TCATAAATCCTTGCCTCCCTCATATGTAGTTC 5'

1931

Triticum aestivum

TTTTGGGACGGAGGGAGTATT

alignment

plot

GSM911924

gi|241988920|gb|AK330142.1|AK330142 HTC Triticum aestivum cDNA, clone: SET3_L15, cultivar: Chinese Spring.

2

1804

0

3

1.5

5'     TTTTGGGACGGAGGGAGTATT        3'
       ||||||o|||||o||||||o|
3' AGATAAAACCTTGCCTTCCTCATGAATGAACG 5'

1933

Triticum aestivum

TGAAGCTGCCAGCATGATCTA

alignment

plot

GSM911924

gi|241987072|gb|AK334329.1|AK334329 HTC Triticum aestivum cDNA, clone: WT009_L17, cultivar: Chinese Spring.

0

3124

0

37

4

5'     TGAAGCTGCCAGCATGATCTA        3'
         ||||||||||| ||||||
3' TTTATGTTCGACGGTCGGACTAGAACGTCCCA 5'

1935

Triticum aestivum

CATTATGGGACGGAGGGAGTA

alignment

plot

GSM911924

gi|32128647|gb|BT009096.1|BT009096 PLN Triticum aestivum clone wkm2c.pk005.g2:fis, full insert mRNA sequence.

2

803

0

8

2.5

5'     CATTATGGGACGGAGGGAGTA        3'
        ||| |||o||||||||||||
3' CTCATTAA-ACCTTGCCTCCCTCATCGTCCTT 5'

1937

Triticum aestivum

TTTGGGACGGAGGGAGTACTT

alignment

plot

GSM911924

gi|32128647|gb|BT009096.1|BT009096 PLN Triticum aestivum clone wkm2c.pk005.g2:fis, full insert mRNA sequence.

2

800

0.05

2

3

5'     TTTGGGACGGAGGGAGTACTT        3'
       |||||o|||||||||||| o
3' CATTAAACCTTGCCTCCCTCATCGTCCTTCGT 5'

1939

Triticum aestivum

TTACTCCCTCCGTCCCACAAT

alignment

plot

GSM911924

gi|241983639|gb|AK331581.1|AK331581 HTC Triticum aestivum cDNA, clone: SET1_J20, cultivar: Chinese Spring.

2

610

0.01

7

3

5'     TTACTCCCTCCGTCCCACAAT        3'
       oo||||||||||| ||| |||
3' TGATGGTGAGGGAGGCAAGGTTTTATCTACTG 5'

1941

Triticum aestivum

TAGCCAAGGATGATTTGCC

alignment

plot

GSM911924

gi|32129093|gb|BT009542.1|BT009542 PLN Triticum aestivum clone wr1.pk0153.c7:fis, full insert mRNA sequence.

0

777

0

148

74

2

5'     TAGCCAAGGATGATTTGCC          3'
        |||||||||||| |||||
3' TTATTTCGGTTCCTACTCAACGGACTGGTGTG 5'

1943

Triticum aestivum

ATACTCCCTCCGTCCCATAAT

alignment

plot

GSM911924

gi|241988536|gb|AK335793.1|AK335793 HTC Triticum aestivum cDNA, clone: WT013_M16, cultivar: Chinese Spring.

2

968

0

2

3

5'     ATACTCCCTCCGTCCCATAAT        3'
       ||||||||||||| ||||||
3' CATATATGAGGGAGGCAAGGTATTTTTCACTG 5'

1945

Triticum aestivum

ACTACTCCCTCCGTTCCTAAA

alignment

plot

GSM911924

gi|241988536|gb|AK335793.1|AK335793 HTC Triticum aestivum cDNA, clone: WT013_M16, cultivar: Chinese Spring.

2

969

0

4

2

5'     ACTACTCCCTCCGTTCCTAAA        3'
       | |||||||||||||| ||||
3' CATAT-ATGAGGGAGGCAAGTATTTGTTCACT 5'

1947

Triticum aestivum

TTTTGGGACGGAGGGAGTATT

alignment

plot

GSM911924

gi|32128647|gb|BT009096.1|BT009096 PLN Triticum aestivum clone wkm2c.pk005.g2:fis, full insert mRNA sequence.

2

801

0.05

3

5'     TTTTGGGACGGAGGGAGTATT        3'
        |||||o|||||||||||| o
3' TCATTAAACCTTGCCTCCCTCATCGTCCTTCG 5'

1949

Vitis vinifera

TGGATGCAGCGGTTCATCGAT

alignment

plot

GSM458931-2730

VIT_06s0004g04240.t01 cdna:novel chromosome:IGGP_12x:6:5192100:5192872:1 gene:VIT_06s0004g04240 transcript:VIT_06s0004g04240.t01

2

509

0.05

2

1

4

5'     TGGATGCAGCGGTTCATCGAT        3'
       | |||| ||| |||||| |||
3' CAGCAACTACTTCGACAAGTA-CTAGGGGTAC 5'

1951

Vitis vinifera

TTGGCATTCTGTCCACCTCC

alignment

plot

GSM458931-2730

VIT_01s0010g03730.t01 cdna:novel chromosome:IGGP_12x:1:21087951:21095392:1 gene:VIT_01s0010g03730 transcript:VIT_01s0010g03730.t

1

1209

0

2

1

5'     TTGGCATTCTGTCCACCTCC         3'
       ||||||||||||| ||||||
3' TACAAACCGTAAGACAGTTGGAGGAAGGTGTT 5'

1953

Vitis vinifera

TGAATCTTGATGATGCTACAC

alignment

plot

GSM458931-2730

VIT_01s0010g03600.t01 cdna:novel chromosome:IGGP_12x:1:20940834:20943043:1 gene:VIT_01s0010g03600 transcript:VIT_01s0010g03600.t

1

715

0.01

2

3

5'     TGAATCTTGATGATGCTACAC        3'
       |||||| |||||||| | |||
3' TTAGACTTAG-ACTACTACTAAGTGGTCGTCT 5'

1955

Vitis vinifera

TTGACAGAAGATAGAGAGCAC

alignment

plot

GSM458931-2730

VIT_01s0010g03710.t01 cdna:novel chromosome:IGGP_12x:1:21064260:21071687:-1 gene:VIT_01s0010g03710 transcript:VIT_01s0010g03710.

1

1545

0

2

1

5'     TTGACAGAAGATAGAGAGCAC        3'
       ||||||||||| |||||||||
3' AAGCAACTGTCTTCTCTCTCTCGTGCTGCTTC 5'

1957

Vitis vinifera

TCGGACCAGGCTTCATTCC

alignment

plot

GSM458931-2730

VIT_04s0008g03250.t01 cdna:novel chromosome:IGGP_12x:4:2700630:2709554:-1 gene:VIT_04s0008g03250 transcript:VIT_04s0008g03250.t0

2

565

0

2

1

5'     TCGGACCAGGCTTCATTCC          3'
       o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTCCGTAAAC 5'

1959

Vitis vinifera

TGCCTGGCTCCCTGTATGCCA

alignment

plot

GSM458931-2730

VIT_13s0019g04380.t01 cdna:novel chromosome:IGGP_12x:13:5744428:5747932:-1 gene:VIT_13s0019g04380 transcript:VIT_13s0019g04380.t

1

1518

0

2

1

5'     TGCCTGGCTCCCTGTATGCCA        3'
       ||||||||||||||||||||
3' TCGTACGGACCGAGGGACATACGGACGTCCTT 5'

1961

Vitis vinifera

TGACAACGAGAGAGAGCACGC

alignment

plot

GSM458931-2730

VIT_01s0010g03910.t01 cdna:novel chromosome:IGGP_12x:1:21412823:21416284:-1 gene:VIT_01s0010g03910 transcript:VIT_01s0010g03910.

1

924

0.02

2

3

5'    TGACA-ACGAGAGAGAGCACGC        3'
      ||||| | |||||||||||||
3' GCTACTGTCTTCTCTCTCTCGTGCTAGTCTTG 5'

1963

Vitis vinifera

TTAGATTCACGCACAAACTCG

alignment

plot

GSM458931-2730

VIT_10s0042g01150.t01 cdna:novel chromosome:IGGP_12x:10:15100682:15105025:1 gene:VIT_10s0042g01150 transcript:VIT_10s0042g01150.

1

3103

0

2

1

5'     TTAGATTCACGCACAAACTCG        3'
       ||||||||||||||||||||
3' GGGTAATCTAAGTGCGTGTTTGAGGAAATGAT 5'

1965

Vitis vinifera

TGACAGAGGAGAGTGAGCAC

alignment

plot

GSM458931-2730

VIT_01s0010g03910.t01 cdna:novel chromosome:IGGP_12x:1:21412823:21416284:-1 gene:VIT_01s0010g03910 transcript:VIT_01s0010g03910.

1

925

0.01

2

1.5

5'     TGACAGAGGAGAGTGAGCAC         3'
       |||||||o||||| ||||||
3' CGCTACTGTCTTCTCTCTCTCGTGCTAGTCTT 5'

1967

Vitis vinifera

TTGACAGAAGATAGAGAGCAC

alignment

plot

GSM458931-2730

VIT_11s0065g00170.t01 cdna:novel chromosome:IGGP_12x:11:13588641:13607268:-1 gene:VIT_11s0065g00170 transcript:VIT_11s0065g00170

1

1160

0

2

1

5'     TTGACAGAAGATAGAGAGCAC        3'
       ||||||||||| |||||||||
3' AATCAACTGTCTTCTCTCTCTCGTGCGGCCTT 5'

1969

Vitis vinifera

TTTGGATTGAAGGGAGCTC

alignment

plot

GSM458931-2730

VIT_13s0067g01630.t01 cdna:novel chromosome:IGGP_12x:13_random:914710:922589:-1 gene:VIT_13s0067g01630 transcript:VIT_13s0067g01

1

1381

0.03

2

5'     TTTGGATTGAAGGGAGCTC          3'
        ||||| ||||||||||||
3' TCTATAACCTCACTTCCCTCGAGGTTGAAGTG 5'

1971

Vitis vinifera

AAGCTCAGGAGGGATAGCGCC

alignment

plot

GSM458931-2730

VIT_12s0059g01410.t01 cdna:novel chromosome:IGGP_12x:12:6340188:6340705:1 gene:VIT_12s0059g01410 transcript:VIT_12s0059g01410.t0

1

211

0

2

1.5

5'     AAGCTCAGGAGGGATAGCGCC        3'
       |||||||||||o|||| ||||
3' CTGATTCGAGTCCTCTCTATAGCGGAATGGGA 5'

1973

Vitis vinifera

TAGCCAAGGATGACTTGCCTG

alignment

plot

GSM458931-2730

VIT_06s0004g02270.t01 cdna:novel chromosome:IGGP_12x:6:2680757:2687576:1 gene:VIT_06s0004g02270 transcript:VIT_06s0004g02270.t01

0

1146

0

2

3.5

5'     TAGCCAAGGATGACTTGCCTG        3'
        |||||||o|||| ||||| |
3' TCGTTTCGGTTCTTACTAAACGG-CGGGTCGT 5'

1975

Vitis vinifera

TGGTTGAGCCGCGCCAATATC

alignment

plot

GSM458931-2730

VIT_04s0023g01380.t01 cdna:novel chromosome:IGGP_12x:4:17877548:17879580:-1 gene:VIT_04s0023g01380 transcript:VIT_04s0023g01380.

1

667

0

2

0.5

5'     TGGTTGAGCCGCGCCAATATC        3'
       ||o||||||||||||||||||
3' GGCAACTAACTCGGCGCGGTTATAGCGGACTC 5'

1977

Vitis vinifera

TGGATGCAGCGGTTCATCGAT

alignment

plot

GSM458931-2730

VIT_06s0004g04230.t01 cdna:novel chromosome:IGGP_12x:6:5187608:5188059:1 gene:VIT_06s0004g04230 transcript:VIT_06s0004g04230.t01

2

266

0.02

2

1

4

5'     TGGATGCAGCGGTTCATCGAT        3'
       | |||| ||| |||||| |||
3' CAGCAACTACTTCGACAAGTA-CTAGGGGTAC 5'

1979

Vitis vinifera

TTGGACTGAAGGGAGCTCCCT

alignment

plot

GSM458931-2730

VIT_10s0003g03910.t01 cdna:novel chromosome:IGGP_12x:10:6666005:6668779:-1 gene:VIT_10s0003g03910 transcript:VIT_10s0003g03910.t

1

1795

0.02

2

3

5'     TTGGACTGAAGGGAGCTCCCT        3'
       |||||||||||||  | ||||
3' TCTTAACCTGACTTCCCAGG-GGGATAACTTT 5'

1981

Vitis vinifera

TCGGACCAGGCTTCATTCC

alignment

plot

GSM458931-2730

VIT_13s0019g04320.t01 cdna:novel chromosome:IGGP_12x:13:5642849:5655110:1 gene:VIT_13s0019g04320 transcript:VIT_13s0019g04320.t0

1

580

0

2

1

5'     TCGGACCAGGCTTCATTCC          3'
       o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTCCTTAGAC 5'

1983

Vitis vinifera

ATGCACTGCCTCTTCCCTGGC

alignment

plot

GSM458931-2730

VIT_05s0020g03180.t01 cdna:novel chromosome:IGGP_12x:5:4942932:4943720:1 gene:VIT_05s0020g03180 transcript:VIT_05s0020g03180.t01

1

433

0.05

2

3.5

5'     ATGCACTGCCTCTTCCCTGGC        3'
       | |||||| |||o| ||||||
3' GCGGTTCGTGAC-GAGGAAGGACCGGTTGAAC 5'

1985

Vitis vinifera

TTGAGCCGTGCCAATATCATG

alignment

plot

GSM458931-2730

VIT_15s0048g00270.t01 cdna:novel chromosome:IGGP_12x:15:14396828:14399794:-1 gene:VIT_15s0048g00270 transcript:VIT_15s0048g00270

1

1588

0.02

2

3

5'     TTGAGCCGTGCCAATATCATG        3'
       ||||||||o||||||||| o
3' CACTAACTCGGCGCGGTTATAGGGAACGCGCT 5'

1987

Vitis vinifera

TTCCACAGCTTTCTTGAACT

alignment

plot

GSM458931-2730

VIT_09s0002g01350.t01 cdna:novel chromosome:IGGP_12x:9:1135177:1136542:1 gene:VIT_09s0002g01350 transcript:VIT_09s0002g01350.t01

0

406

0

2

5'    TTCCACA-GCTTTCTTGAACT         3'
      ||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCCAAAAACG 5'

1989

Vitis vinifera

TAGCCAAGGATGACTTGCCTG

alignment

plot

GSM458931-2730

VIT_08s0007g08250.t01 cdna:novel chromosome:IGGP_12x:8:21597124:21603336:1 gene:VIT_08s0007g08250 transcript:VIT_08s0007g08250.t

1

1513

0

2

2.5

5'     TAGCCAAGGATGACTTGCCTG        3'
        |||||||o|||| |||||||
3' TATGTTCGGTTCTTACTAAACGGACTTTTATG 5'

1991

Vitis vinifera

TGACAACGAGAGAGAGCACGC

alignment

plot

GSM458931-2730

VIT_12s0028g03350.t01 cdna:novel chromosome:IGGP_12x:12:4108335:4110142:-1 gene:VIT_12s0028g03350 transcript:VIT_12s0028g03350.t

1

622

0

2

3

5'    TGACA-ACGAGAGAGAGCACGC        3'
      ||||| | ||||||||||| ||
3' GTTACTGTCTTCTCTCTCTCGTACGACCACCC 5'

1993

Vitis vinifera

TTGACAGAAGATAGAGAGCAC

alignment

plot

GSM458931-2730

VIT_10s0003g00050.t01 cdna:novel chromosome:IGGP_12x:10:1346397:1348736:1 gene:VIT_10s0003g00050 transcript:VIT_10s0003g00050.t0

1

579

0

2

5'     TTGACAGAAGATAGAGAGCAC        3'
       ||||||| ||||||||||||
3' CTCTAACTGTCCTCTATCTCTCGTATGATCTA 5'

1995

Vitis vinifera

GCCTGGCTCCCCTGTATGCC

alignment

plot

GSM458931-2730

VIT_08s0040g01810.t01 cdna:novel chromosome:IGGP_12x:8:12924098:12929097:1 gene:VIT_08s0040g01810 transcript:VIT_08s0040g01810.t

2

2138

0

2

1

1.5

5'     GCCTGGCTCCCCTGTATGCC         3'
       |||||||| |||||o|||||
3' CGTACGGACCGA-GGGACGTACGGTCGTCCTT 5'

1997

Vitis vinifera

TGACAGAGGAGAGTGAGCAC

alignment

plot

GSM458931-2730

VIT_12s0028g03350.t01 cdna:novel chromosome:IGGP_12x:12:4108335:4110142:-1 gene:VIT_12s0028g03350 transcript:VIT_12s0028g03350.t

1

623

0.01

2

2.5

5'     TGACAGAGGAGAGTGAGCAC         3'
       |||||||o||||| |||||
3' TGTTACTGTCTTCTCTCTCTCGTACGACCACC 5'

1999

Vitis vinifera

TTGGACTGAAGGGAGCTCCCT

alignment

plot

GSM458931-2730

VIT_19s0014g01680.t01 cdna:novel chromosome:IGGP_12x:19:1805453:1807492:1 gene:VIT_19s0014g01680 transcript:VIT_19s0014g01680.t0

1

1092

0.03

2

3.5

5'     TTGGACTGAAGGGAGCTCCCT        3'
       o||||||||||||  | ||||
3' CAACGACCTGACTTCCCCAG-GGGAGACTCTT 5'

2001

Vitis vinifera

TGGAGAAGCAGGGCACGTGCA

alignment

plot

GSM458931-2730

VIT_17s0000g06400.t01 cdna:novel chromosome:IGGP_12x:17:6977372:6979197:1 gene:VIT_17s0000g06400 transcript:VIT_17s0000g06400.t0

1

939

0

2

1

5'     TGGAGAAGCAGGGCACGTGCA        3'
       ||||||||||||||||||| |
3' CCCAACCTCTTCGTCCCGTGCAC-TCCACTAA 5'

2003

Vitis vinifera

TCTTGCTCAAATGAGTGTTCCA

alignment

plot

GSM458931-2730

VIT_14s0066g01220.t01 cdna:novel chromosome:IGGP_12x:14:27708124:27709246:-1 gene:VIT_14s0066g01220 transcript:VIT_14s0066g01220

1

319

0.01

2

1

5'     TCTTGCTCAAATGAGTGTTCCA       3'
       | ||||||||||||||||||||
3' TCGAAAAACGAGTTTACTCACAAGGTCATCAA 5'

2005

Vitis vinifera

GAGCCAAGGATGACTTGCCGG

alignment

plot

GSM458931-2730

VIT_01s0011g05560.t01 cdna:novel chromosome:IGGP_12x:1:5284036:5288161:-1 gene:VIT_01s0011g05560 transcript:VIT_01s0011g05560.t0

1

1158

0.05

2

3.5

5'     GAGCCAAGGATGACTTGCCGG        3'
       ||||||||||||  |||| o|
3' TTGGCTCGGTTCCTACGAAACGCTCGAACTCC 5'

2007

Vitis vinifera

TGAAGCTGCCAGCATGATCTG

alignment

plot

GSM458931-2730

VIT_04s0079g00200.t01 cdna:novel chromosome:IGGP_12x:4:10432267:10448180:1 gene:VIT_04s0079g00200 transcript:VIT_04s0079g00200.t

2

1883

0

2

1.33333

4

5'     TGAAGCTGCCAGCATGATCTG        3'
         ||||||||||| ||||||
3' TTTATGTTCGACGGTCGGACTAGAGTCTCCCA 5'

2009

Vitis vinifera

TGCCTGGCTCCCTGTATGCCA

alignment

plot

GSM458931-2730

VIT_06s0004g02750.t01 cdna:novel chromosome:IGGP_12x:6:3443777:3447902:1 gene:VIT_06s0004g02750 transcript:VIT_06s0004g02750.t01

2

1332

0

2

1

5'     TGCCTGGCTCCCTGTATGCCA        3'
       ||||||||||||||||||||
3' TCGTACGGACCGAGGGACATACGGACGTCCTC 5'

2011

Vitis vinifera

TTCCACAGCTTTCTTGAACT

alignment

plot

GSM458931-2730

VIT_16s0098g01080.t01 cdna:novel chromosome:IGGP_12x:16:21346622:21349185:-1 gene:VIT_16s0098g01080 transcript:VIT_16s0098g01080

1

692

0

2

5'    TTCCACA-GCTTTCTTGAACT         3'
      ||||||| ||||||||||||
3' TTGAAGGTGTCCGAAAGAACTTGCCCCAGCCG 5'

2013

Vitis vinifera

GGCATGTGTGGGGCATAATAG

alignment

plot

GSM458931-2730

VIT_02s0033g01110.t01 cdna:novel chromosome:IGGP_12x:2:16327359:16335347:1 gene:VIT_02s0033g01110 transcript:VIT_02s0033g01110.t

2

869

0

2

1

3.5

5'     GGCATGTGTGGGGCATAATAG        3'
       || ||| |||||o||||| ||
3' GCTTCCCTAC-CACCCTGTATTTTCGTTGAGA 5'

2015

Vitis vinifera

TTTCCCAGACCCCCAATACCAA

alignment

plot

GSM458931-2730

VIT_12s0028g00710.t01 cdna:novel chromosome:IGGP_12x:12:1264959:1267086:-1 gene:VIT_12s0028g00710 transcript:VIT_12s0028g00710.t

2

1380

0.01

2

1

4

5'     TTTCCCAGACCCCCAATACCAA       3'
       |||||||o|||| | |o||| |
3' ACGGAAAGGGTTTGGGAGGTGTGGGTGGGAAG 5'

2017

Vitis vinifera

GAATCTTGATGATGCTCCATC

alignment

plot

GSM458931-2730

VIT_19s0177g00100.t01 cdna:novel chromosome:IGGP_12x:19:5929703:5931655:1 gene:VIT_19s0177g00100 transcript:VIT_19s0177g00100.t0

1

424

0.03

2

3

5'     GAATCTTGATGATGCTCCATC        3'
       |||||||||| || |||| ||
3' GGTACTTAGAACTA-TAGGAGGAAGAAGTGTT 5'

2019

Vitis vinifera

TCGGACCAGGCTTCATTCC

alignment

plot

GSM458931-2730

VIT_06s0004g02800.t01 cdna:novel chromosome:IGGP_12x:6:3508029:3516493:-1 gene:VIT_06s0004g02800 transcript:VIT_06s0004g02800.t0

1

579

0

2

1

5'     TCGGACCAGGCTTCATTCC          3'
       o|||||||||||||||o||
3' CTTAGGCCTGGTCCGAAGTAGGGTCCGTAGAC 5'

2021

Vitis vinifera

GGCTGCTGAGAAAATGTAGGA

alignment

plot

GSM458931-2730

VIT_07s0031g01230.t01 cdna:novel chromosome:IGGP_12x:7:17320663:17322941:1 gene:VIT_07s0031g01230 transcript:VIT_07s0031g01230.t

1

65

0

2

1

5'     GGCTGCTGAGAAAATGTAGGA        3'
       |||||||||||||||| ||||
3' CAAACCGACGACTCTTTTAC-TCCTGCTTCCC 5'

2023

Vitis vinifera

TCGGACCAGGCTTCATTCC

alignment

plot

GSM458931-2730

VIT_09s0002g03740.t01 cdna:novel chromosome:IGGP_12x:9:3414759:3424840:-1 gene:VIT_09s0002g03740 transcript:VIT_09s0002g03740.t0

2

1110

0

2

1

0.5

5'     TCGGACCAGGCTTCATTCC          3'
       o||||||||||||||||||
3' CTTAGGCCTGGTCCGAAGTAAGGTCCGTAAAC 5'

2025

Vitis vinifera

TTCCACAGCTTTCTTGAACT

alignment

plot

GSM458931-2730

VIT_02s0025g02680.t01 cdna:novel chromosome:IGGP_12x:2:2331487:2332154:1 gene:VIT_02s0025g02680 transcript:VIT_02s0025g02680.t01

0

325

0

2

5'    TTCCACA-GCTTTCTTGAACT         3'
      ||||||| ||||||||||||
3' GTTAAGGTGTCCGAAAGAACTTGCCCCAGCCG 5'

2027

Vitis vinifera

TTGGATTGAAGGGAGCTCTA

alignment

plot

GSM458931-2730

VIT_18s0001g08020.t01 cdna:novel chromosome:IGGP_12x:18:6473675:6486586:1 gene:VIT_18s0001g08020 transcript:VIT_18s0001g08020.t0

1

1433

0.05

2

3

5'     TTGGATTGAAGGGAGCT-CTA        3'
       o||o||||||||||o|| |o|
3' TTACGACTTAACTTCCCTTGACGGTGTAGGTT 5'

2029

Vitis vinifera

TCCAAAGGGATCGCATTGATC

alignment

plot

GSM458931-2730

VIT_14s0030g01240.t01 cdna:novel chromosome:IGGP_12x:14:5731297:5735020:1 gene:VIT_14s0030g01240 transcript:VIT_14s0030g01240.t0

1

1860

0

2

1

5'     TCCAAAGGGATCGCATTGATC        3'
       |||||||||||||||||| ||
3' CTGTAGGTTTCCCTAGCGTAAC-AGAGGTCGA 5'

2031

Vitis vinifera

CTTGGAGTGAAGGGAGCTCTC

alignment

plot

GSM458931-2730

VIT_17s0000g02950.t01 cdna:novel chromosome:IGGP_12x:17:2721139:2722142:-1 gene:VIT_17s0000g02950 transcript:VIT_17s0000g02950.t

2

588

0.01

2

1

3.5

5'     CTTGGAGTGAAGGGAGCTCTC        3'
       | |||||||| ||||o| |||
3' GTAAGTACCTCACTACCCTTG-GAGAGTCGTA 5'

2033

Vitis vinifera

TTCCACAGCTTTCTTGAACT

alignment

plot

GSM458931-2730

VIT_15s0048g01740.t01 cdna:novel chromosome:IGGP_12x:15:15941212:15945130:-1 gene:VIT_15s0048g01740 transcript:VIT_15s0048g01740

1

597

0

2

5'    TTCCACA-GCTTTCTTGAACT         3'
      ||||||| ||||||||||||
3' TCGAAGGTGTCCGAAAGAACTTGCGACCGCCG 5'

2035

Vitis vinifera

TGAATCTTGATGATGCTACAT

alignment

plot

GSM458931-2730

VIT_13s0019g03550.t01 cdna:novel chromosome:IGGP_12x:13:4720263:4723858:1 gene:VIT_13s0019g03550 transcript:VIT_13s0019g03550.t0

1

1315

0.04

2

3.5

5'     TGAATCTTGATGATGCTACAT        3'
        |||||o|||||||||| ||
3' CTTCCCTTAGGACTACTACGACGTCATCTGTT 5'

2037

Vitis vinifera

TCTTGCTCAAATGAGTGTTCCA

alignment

plot

GSM458931-2730

VIT_14s0006g03100.t01 cdna:novel chromosome:IGGP_12x:14:21607164:21608162:1 gene:VIT_14s0006g03100 transcript:VIT_14s0006g03100.

1

139

0

2

1.5

5'     TCTTGCTCAAATGAGTGTTCCA       3'
       |||||||||| |||||o|||||
3' TTAAAGAACGAGTTCACTCATAAGGTACTAGA 5'

2039

Vitis vinifera

GCCTGGCTCCCCTGTATGCC

alignment

plot

GSM458931-2730

VIT_18s0001g04180.t01 cdna:novel chromosome:IGGP_12x:18:3749619:3757678:1 gene:VIT_18s0001g04180 transcript:VIT_18s0001g04180.t0

1

686

0

2

1.5

5'     GCCTGGCTCCCCTGTATGCC         3'
       |||||||| |||||o|||||
3' AGAACGGACCGA-GGGACGTACGGTCGTCCTT 5'

2041

Vitis vinifera

TCGGACCAGGCTTCATTCCCC

alignment

plot

GSM458931-2730

VIT_10s0003g04670.t01 cdna:novel chromosome:IGGP_12x:10:8333667:8341190:1 gene:VIT_10s0003g04670 transcript:VIT_10s0003g04670.t0

1

593

0

2

2.5

5'     TCGGACCAGGCTTCATTCCCC        3'
       o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5'

#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment