miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: mirtrons


See also mirtron predictions from Ladewig et al., 2012



Please select library, species and/or miRNA sequence.


library: GSM360262-14327 (by default)


#specieslibrarymiRNAmiRNA*arm
15 Drosophila melanogaster GSM360262-14327 TCACAGCTTTTTGTGTTTACA TAAATATCTAAAGTTGAACT down


Secondary structure:
((((((((..(((((((.(((((.((...)))))))..)))))))..))))))))..
Graphical representation of secondary structure.

Overlaps with miRNEST predictions in ESTs: MNEST006577
Overlaps with miRBase pre-miRNAs: dme-mir-1008 
TCCTCATCTATGTAAATATCTAAAGTTGAACTTGGCCAATGGCAAGTCACAGCTTTTTGTGTTTACAGGAGAACGA
----------------------------------------------TCACAGCTTTTTGTGTTTACA 	46
----------------------------------------------TCACAGCTTTTTGTGTTTACAG 	36




#specieslibrarymiRNAmiRNA*arm
16 Drosophila melanogaster GSM360262-14327 TCTCACATTTACATATTCACAG GTGGGTATCTGGATGTGGTTGG down


Secondary structure:
((((((((.(((((((((..((((.....))))..).)))))))).))))))))..
Graphical representation of secondary structure.

Overlaps with miRNEST predictions in ESTs: MNEST036583 MNEST036584
Overlaps with miRBase pre-miRNAs: dsi-mir-1003 dme-mir-1003 
AGCTGCGCAGAAGGTGGGTATCTGGATGTGGTTGGCTCTGGCGGTCCTCTCACATTTACATATTCACAGGCGCCGTGAG
-------------GTGGGTATCTGGATGTGGTTG 	9
-------------GTGGGTATCTGGATGTGGTTGG 	29
-----------------------------------------------TCTCACATTTACATATTCACA 	227
-----------------------------------------------TCTCACATTTACATATTCA 	3
-----------------------------------------------TCTCACATTTACATATTCAC 	39
-----------------------------------------------TCTCACATTTACATATTCACAG 	377
------------------------------------------------CTCACATTTACATATTCACAG 	7
------------------------------------------------CTCACATTTACATATTCACA 	2
------------------------------------------------CTCACATTTACATATTCAC 	1