miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: download




Files for downloadDescription
mirnest_EST_predictions.gz (770 kb) miRNEST miRNAs predicted in EST sequences. Tab separated values: mature miRNA, miRNA*, pre-miRNA, species, secondary structure, kingdom (0 = plant, 1 = animal)
mirnest_targets.gz (102 Mb) Plant miRNA targets predicted in EST sequences. Tab separated values: mature miRNA, species, EST name, EST sequence
mirnest_deep_predictions.gz (4.1 Mb) miRNEST miRNA predictions using deep sequencing data. # separated values: mature miRNA, miRNA*, pre-miRNA, library, species, alignment (reads vs pre-miRNA). Within the alignment, mature miRNA is marked with <span> html tag.
mirnest_degradomes.gz (96 kb) miRNEST plant miRNA targets with degradome support. Tab separated values: mature miRNA, species, library, transcript name, category (by PAREsnip), cleavage position, p-value, transcript sequence (cleavage site with flanking sequences)
mirnest_mirtrons.gz (6 kb) miRNEST mirtrons predicted using deep sequencing data. # separated values: mature miRNA, miRNA*, pre-miRNA, intron sequence, secondary structure, library, species, alignment (reads vs pre-miRNA; includes flanking sequence)
mirnest_mirna_gene_structure.gz (36 kb) Plant miRNA gene structure predictions. Tab separated values: miRNA name, EST name, pre-miRNA sequence, EST sequence, aligned genomic sequence. Splice sites are marked with # and *. Long introns are truncated and marked with ' ... '.