| Files for download | Description |
|---|
|
mirnest_EST_predictions.gz (770 kb)
|
miRNEST miRNAs predicted in EST sequences. Tab separated values: mature miRNA, miRNA*, pre-miRNA, species, secondary structure, kingdom (0 = plant, 1 = animal)
|
|
mirnest_targets.gz (102 Mb)
|
Plant miRNA targets predicted in EST sequences. Tab separated values: mature miRNA, species, EST name, EST sequence
|
|
mirnest_deep_predictions.gz (4.1 Mb)
|
miRNEST miRNA predictions using deep sequencing data. # separated values: mature miRNA, miRNA*, pre-miRNA, library, species, alignment (reads vs pre-miRNA). Within the alignment, mature miRNA is marked with <span> html tag.
|
|
mirnest_degradomes.gz (96 kb)
|
miRNEST plant miRNA targets with degradome support. Tab separated values: mature miRNA, species, library, transcript name, category (by PAREsnip), cleavage position, p-value, transcript sequence (cleavage site with flanking sequences)
|
|
mirnest_mirtrons.gz (6 kb)
|
miRNEST mirtrons predicted using deep sequencing data. # separated values: mature miRNA, miRNA*, pre-miRNA, intron sequence, secondary structure, library, species, alignment (reads vs pre-miRNA; includes flanking sequence)
|
|
mirnest_mirna_gene_structure.gz (36 kb)
|
Plant miRNA gene structure predictions. Tab separated values: miRNA name, EST name, pre-miRNA sequence, EST sequence, aligned genomic sequence. Splice sites are marked with # and *. Long introns are truncated and marked with ' ... '.
|
