miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|10233781|gb|BE802669.1|BE802669 CGCCACCAACACAGCGTTGTTCCATTTCGATTACTCGGCTGCCATTGCCATTGCCATTGCCGTTTCAATTGCAAGTAAGA
AGAAGAGCAAAAGGGGGAAAAGTGGTAATGAGCATGGACGCAGGTATTGGAGTGATGGGCACCAAGTTGGGTATGATGAG
CTATTTCGAATCCGACGGAGAGGTTGCTCCTGCCACTGACGCGGGTTTCAAAGAAGGCAACATCGTCACCCAGATCAAAA
CTGAGGCCACCGATGGATACGACACCGTGCAGGTTGGTTACCGAATGGTCATACACCGCAAATTGACCAAACCCGAAATG
GGTCATCTCCATAAGGTCGGAGCCATTCTCATGCACCATCTTCAGGAGTTACGACTTCAAGCCATCGATGGCTTCGACCT
TAATCACCGCACTTCTTTTGATGAAACTTTCAACGAGGGTGAG




Most similar to sp|O80360|RK3_TOBAC

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O80360|RK3_TOBAC 50S ribosomal protein L3, chloroplastic
           (Fragment) OS=Nicotiana tabacum GN=RPL3 PE=1 SV=1
          Length = 259

 Score =  154 bits (390), Expect = 1e-37
 Identities = 74/111 (66%), Positives = 86/111 (77%)
 Frame = +3

Query: 111 SMDAGIGVMGTKLGMMSYFESDGEVAPATDAGFKEGNIVTQIKTEATDGYDTVQVGYRMV 290
           S++AG+GVM TKLGMMS+FE  G V P T  GF+EGNIVTQIKTEATDGY+ VQVGYR V
Sbjct: 39  SLEAGVGVMATKLGMMSFFEESGTVVPVTVVGFREGNIVTQIKTEATDGYNAVQVGYRRV 98

Query: 291 IHRKLTKPEMGHLHKVGAILMHHLQELRLQAIDGFDLNHRTSFDETFNEGE 443
             RKLTKPEMGHL K G I + HLQE RLQ+IDGF++  +  F E F EG+
Sbjct: 99  RDRKLTKPEMGHLEKSGIIPLRHLQEFRLQSIDGFEVTQKLDFGELFKEGD 149