miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|104746944|gb|EC091633.1|EC091633 TGAGCTGTTCTTCTCACATTATCACACAAGATTTTGTAATTGTAAAGCTCATTGCACACAGCTGACAACTTGCTTCAGGA
ATGGCAAAGAGAGTGTTGATTGTGTATGCCACCCAAGGGCTGGGTTCCATCCATGCAGCAGCCAAAGATGCTGCTATAGA
GGTCTTAACTGCTCAGGGCTGCACGGTGGAAGTTTCTGACCTTTACGCCATGAAGTTTAAAGCTTCTGCTACTGCAGAGG
ACATCACCGGAGAAATTAAGAATGCTAAACACTTCCGTTATGCAGAGGAGACAAAATCAGCATGGGAAGCAGGAAAACTA
TCTGCTGACATCACTGAAGAACAATGTAAACTCATGGCGGCAGACTTGATCATCTTTCAGTTCCCCATGTACTGGTTCAC
TGTTCCTGCAATCATGAAGGGCTGGATTGACCGAGTGTTCACACTGGGCTTTGCCTACTCTCAAGAGAAGCGATACACCC
AAGGCATCTTCAAGGACAGAGAGCCATGCTGTCCTTCACCACTGGGTCTCATGAGTCCATGTTCAGGTGCCAATGGCCTT
TATGGCGGACTGAATGTGGACACCTCTGGCCCCTTCCAAATGGCGTCCTGGCGCACTGCGGCTTCCCAGGGTGCTGGGCC
CCCAATTTTTGGGGGGCCCGCCCANTTCTCTGAGGCGCGCCGCCTTGCGGTNGGCGGTCCGCGGCAGGTCGCCGTCGAAG
GANACGCTCCTTCTCCGGACGGTGTGAAGTCCCCCAGCCGCACGCACCATGTGTGTCCGCGCCCCCCTCTGCCTTNTNAC
ACATNTCC




Most similar to sp|Q6AY80|NQO2_RAT

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q6AY80|NQO2_RAT Ribosyldihydronicotinamide dehydrogenase
          Length = 231

 Score =  143 bits (361), Expect(2) = 6e-37
 Identities = 69/138 (50%), Positives = 92/138 (66%)
 Frame = +3

Query: 87  KRVLIVYATQGLGSIHAAAKDAAIEVLTAQGCTVEVSDLYAMKFKASATAEDITGEIKNA 266
           K+VL+VYA Q   S + + K  A+E L+ QGCTV VSDLY M F+  AT  D+TG + N 
Sbjct: 4   KKVLLVYAHQEPKSFNGSMKQVAVEELSKQGCTVTVSDLYTMNFEPRATRNDVTGALSNP 63

Query: 267 KHFRYAEETKSAWEAGKLSADITEEQCKLMAADLIIFQFPMYWFTVPAIMKGWIDRVFTL 446
           + F+Y  E   A++   L++DI EEQ K+  ADL+IFQFP+YWF+VPAI+KGW+DRV   
Sbjct: 64  EVFKYGIEAYEAYKKKALTSDILEEQRKVQEADLVIFQFPLYWFSVPAILKGWMDRVLCQ 123

Query: 447 GFAYSQEKRYTQGIFKDR 500
           GFA+     Y  G  KD+
Sbjct: 124 GFAFDVPGFYDSGFLKDK 141



 Score = 32.3 bits (72), Expect(2) = 6e-37
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
 Frame = +2

Query: 488 LQGQRAMLSFTTGSHESMFRCQWPLWRTECG-------HLWPLPNGVLAHCGF 625
           L+ + A+LSFTTG    M+        T+ G        LWPL +G L  CGF
Sbjct: 138 LKDKLALLSFTTGGTAEMY--------TKAGVNGDFRYFLWPLQHGTLHFCGF 182


>sp|P16083|NQO2_HUMAN Ribosyldihydronicotinamide dehydrogenase
           [quinone] OS=Homo sapiens GN=NQO2 PE=1 SV=5
          Length = 231

 Score =  142 bits (358), Expect(2) = 6e-37
 Identities = 69/138 (50%), Positives = 95/138 (68%)
 Frame = +3

Query: 87  KRVLIVYATQGLGSIHAAAKDAAIEVLTAQGCTVEVSDLYAMKFKASATAEDITGEIKNA 266
           K+VLIVYA Q   S + + K+ A++ L+ QGCTV VSDLYAM  +  AT +DITG + N 
Sbjct: 4   KKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTLSNP 63

Query: 267 KHFRYAEETKSAWEAGKLSADITEEQCKLMAADLIIFQFPMYWFTVPAIMKGWIDRVFTL 446
           + F Y  ET  A++   L++DIT+EQ K+  ADL+IFQFP+YWF+VPAI+KGW+DRV   
Sbjct: 64  EVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQ 123

Query: 447 GFAYSQEKRYTQGIFKDR 500
           GFA+     Y  G+ + +
Sbjct: 124 GFAFDIPGFYDSGLLQGK 141



 Score = 33.5 bits (75), Expect(2) = 6e-37
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
 Frame = +2

Query: 488 LQGQRAMLSFTTGSHESMFRCQWPLWRTECG-------HLWPLPNGVLAHCGF 625
           LQG+ A+LS TTG    M+        T+ G        LWPL +G L  CGF
Sbjct: 138 LQGKLALLSVTTGGTAEMY--------TKTGVNGDSRYFLWPLQHGTLHFCGF 182


>sp|Q5RBB9|NQO2_PONAB Ribosyldihydronicotinamide dehydrogenase
           [quinone] OS=Pongo abelii GN=NQO2 PE=2 SV=3
          Length = 231

 Score =  146 bits (368), Expect = 2e-34
 Identities = 79/176 (44%), Positives = 110/176 (62%), Gaps = 1/176 (0%)
 Frame = +3

Query: 87  KRVLIVYATQGLGSIHAAAKDAAIEVLTAQGCTVEVSDLYAMKFKASATAEDITGEIKNA 266
           K+VLIVYA Q   S + + K+ A++ L+ QGCTV VSDLYAM F+  AT +DITG + N 
Sbjct: 4   KKVLIVYAHQEPRSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATKKDITGALSNP 63

Query: 267 KHFRYAEETKSAWEAGKLSADITEEQCKLMAADLIIFQFPMYWFTVPAIMKGWIDRVFTL 446
           + F Y  ET  A++   L++DIT+EQ K+  ADL+IFQFP+YWF+VPAI+KGW+DRV   
Sbjct: 64  EVFHYGVETHEAYKQRSLASDITDEQKKVQEADLVIFQFPLYWFSVPAILKGWMDRVLCQ 123

Query: 447 GFAYSQEKRYTQGIFKDREPCCPSPLGLMSPCSGANG-LYGGLNVDTSGPFQMASW 611
           GFA+     Y  G+ + +       L L+S  +G    +Y    V  +G F+   W
Sbjct: 124 GFAFDIPGFYDSGLLQGK-------LALLSVTTGGTAEMYTKTGV--NGDFRYFLW 170