miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|10742671|gb|BF034959.1|BF034959 GAGCGGTCAGTCTCAGGCCCACTGGGACCTCTGGGCTGCACGTCCCGCCCCCAGCCCCTCTCCTACACACCATGCTGGAC
CTGGAGGAATTTGTCCCGCCTGTGCCCCCATCGTCCTATATTCCCCAGAGTATACCTGTAGTCAGAAACAGATGCCAGAG
CATCAGTACAAGGGCTCCATGGACAGCCCAGTGCCCTTGTACCCTACCGATTGCCCCCCTTCTTATGAGGCAGTCATGGG
ACTACGAGGAGACAGCCAGGCCACTCTCTTTGACCCTCAGCTTCACGATGGCTCGTGCATCTGTGAACGAGTGGCCTCCA
TTGTAGACGTGTCCATGGACAGCGGGTCTCTGGTGCTTGTCAGCCATTTGGTGACCTCCCCTGGGGGGCTCTAGCCCGTC
GGAGGGACTCGTGCCTCGCCTGGATGGTGGAGGGCCTCCGTGCCGCCCCGGTGGGACCTACGTTCTCCGTTCGCTCCATT
CCCAGCGCAGCCCGTGCCGGTTAATTGACTCAAGGCGTTGGACTGGTTGGCCTGCGGGGCCCCTTTCGAGGAAAGGCCCC
TGCCAAGGGGGCCCCCCAAGGGGGTGGCCCGGTCCTATTTCGTGGTTTTGGCCCTTGAAGCTTTCAGCCCCCAAGTGTGT
GTTCCCCCCACCAGGTTGGCCCGGAAGCCTTGGCCCCGGTTAGGAGCCGCTGGGCCGGCCTTGGTGGGGCCCTGTGCTTC
CCCGGAGATTAAGGGCCGCGGGGTCCCGCGGGGGCGAGGGGGCGCCGCCCAACGTTAATGCGCGTGTGTCGCGCCCCAAG
TTTGGGTCCCTTATGGGTGCCTTATTTCTTGCCACCACACGGCTGCGTTGGACCCCATTTACCGGTGCTCCCCCGTGTTC
GCACTTGGGGGCGCGGGTCCCCCGTAATTCGTCCCACTGAACTGCCCCCTGGACACT




Most similar to sp|P81408|F189B_HUMAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P81408|F189B_HUMAN Protein FAM189B OS=Homo sapiens GN=FAM189B
           PE=1 SV=2
          Length = 668

 Score =  162 bits (410), Expect = 3e-39
 Identities = 118/234 (50%), Positives = 131/234 (55%), Gaps = 5/234 (2%)
 Frame = +2

Query: 47  APSPSPTHHA--GPGGICPACAPIVLYSPEYTCSQKQMPEH-QYKGSMDSPVPLYPTDCP 217
           +P P+P  H         P   P   Y PEYTCS +   +   Y GSMDSPVPLYPTDCP
Sbjct: 225 SPPPAPLLHTMLDLEEFVPPVPPPPYYPPEYTCSSETDAQSITYNGSMDSPVPLYPTDCP 284

Query: 218 PSYEAVMGLRGDSQATLFDPQLHDGSCICERVASIVDVSMDSGSLVLVSHLVTSPGGL*P 397
           PSYEAVMGLRGDSQATLFDPQLHDGSCICERVASIVDVSMDSGSLVL S +   PGG   
Sbjct: 285 PSYEAVMGLRGDSQATLFDPQLHDGSCICERVASIVDVSMDSGSLVL-SAIGDLPGG--- 340

Query: 398 VGGTRASPGWWRASVPPRWDLRSXXXXXXXXXXXXN*LKALDWLACG--APFEERPLPRG 571
                +SP      +  +  +RS                 L  L CG   PFEE PLPR 
Sbjct: 341 -----SSPSEDSCLLELQGSVRSVDYVLFRSIQRSRAGYCLS-LDCGLRGPFEESPLPRR 394

Query: 572 PPKGVARSYFVVLALEAFSPQVCVPPTRLARKPWPRLGAAGPALVGPCASPEIK 733
           PP+  ARSY    A EA  P     PT  A +   RL    P  VGPC  PE++
Sbjct: 395 PPR-AARSY-SCSAPEA--PPPLGAPT--AARSCHRL-EGWPPWVGPC-FPELR 440