miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|108855968|gb|EC309991.1|EC309991 GAGGGCTGGGGCTTCCTCCTGGAGAAGCTGGAGAAAACTGACTTGGGTGTCCTTGGCTTCTGAAGGGAAGAGAAGTCAGG
GCTGGAGAAGAAGGGGGTGCTTCTGAAGAAGCAGGCCCAGGAAGATGTCCAAAGTGTTCCGGGTCCTTTTCCGGCTCCTG
TTGCTGTTAGGTGGGGTGGCTTCTGTGACATTTCAACATCATCGTTATGATGATCTCATTCGGACCTTATACAAGGTTCA
CAATGAGTGCCCCCACATCACTAGAGTTTACAGCATTGGGTGCAGCGTCAAGGGAAGACATCTGTATGCCCTGGAATTCA
GTGACTTCCCTGGAATGCATGAGCTCTTGGAGCCAGAATTTAAGTATATTGGAAACATGCATGGGAATGAAGTTCTGGGG
AGAGAGCTGCTGATCCAACTCTGTGAGTTCCTGTGCGAAGAGTACCGCCAGAGGAATGAACGCATCGTCCGGCTGATTCA
CAACACAAGGATTCACATCCTGCCTTCCATGAACCCGGATGGTTATGAAGTAGCTGCAGAACAGGGCCCAGATGCCAATG
GGTATCTTACTGGCCGGAACAATGCCAATGGAGTAGACCTAAACCGAAACTTTCCGGATCTTAACACCTACATGTACTAC
AATGAGAAGAGTGGGGGGCCCAACCACCACATACCCCTTCCAGACAACTGGAGNNTCANNTGGAACCAGAGACTGAGCTG
TTATACAGTGGATGGAATCCATCAACTTTGTNNTNNGCAATCTTCATGGAGGTGCAGTTGTAGCCAATACCCG




Most similar to sp|Q9JJN5|CBPN_MOUSE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9JJN5|CBPN_MOUSE Carboxypeptidase N catalytic chain OS=Mus
           musculus GN=Cpn1 PE=2 SV=1
          Length = 457

 Score =  310 bits (795), Expect(2) = 1e-88
 Identities = 139/172 (80%), Positives = 157/172 (91%)
 Frame = +2

Query: 176 VASVTFQHHRYDDLIRTLYKVHNECPHITRVYSIGCSVKGRHLYALEFSDFPGMHELLEP 355
           V  VTF+HHRYDDL+RTLYKVHN+CP ITR+Y+IG SVKGR+LY LEFSD+PG+HE LEP
Sbjct: 18  VTPVTFRHHRYDDLVRTLYKVHNQCPDITRLYNIGRSVKGRYLYVLEFSDYPGIHEPLEP 77

Query: 356 EFKYIGNMHGNEVLGRELLIQLCEFLCEEYRQRNERIVRLIHNTRIHILPSMNPDGYEVA 535
           E KY+GNMHGNEVLGRELL+QL EFLCEE+R RN+RI+RLI +TRIHILPSMNPDGYEVA
Sbjct: 78  EVKYVGNMHGNEVLGRELLLQLSEFLCEEFRNRNQRILRLIQDTRIHILPSMNPDGYEVA 137

Query: 536 AEQGPDANGYLTGRNNANGVDLNRNFPDLNTYMYYNEKSGGPNHHIPLPDNW 691
           A QGP+ +GYL GRNNANGVDLNRNFPDLNTY YYN K+GGPNHH+PLPDNW
Sbjct: 138 AAQGPNMSGYLVGRNNANGVDLNRNFPDLNTYFYYNSKNGGPNHHLPLPDNW 189



 Score = 38.1 bits (87), Expect(2) = 1e-88
 Identities = 18/25 (72%), Positives = 21/25 (84%), Gaps = 1/25 (4%)
 Frame = +3

Query: 717 AVIQWMESINFV-XXNLHGGAVVAN 788
           AVIQW+ S+NFV   N+HGGAVVAN
Sbjct: 199 AVIQWIRSLNFVLSANMHGGAVVAN 223


>sp|Q2KJ83|CBPN_BOVIN Carboxypeptidase N catalytic chain OS=Bos
           taurus GN=CPN1 PE=2 SV=1
          Length = 462

 Score =  311 bits (797), Expect = 3e-84
 Identities = 143/173 (82%), Positives = 157/173 (90%), Gaps = 1/173 (0%)
 Frame = +2

Query: 176 VASVTFQHHRYDDLIRTLYKVHNECPHITRVYSIGCSVKGRHLYALEFSDFPGMHELLEP 355
           VA VTF+HHRYDDL+R LYKVHNECPHITRVYSIG SVKGRHLY LEFSD+PG+HE LEP
Sbjct: 17  VAPVTFRHHRYDDLVRMLYKVHNECPHITRVYSIGRSVKGRHLYVLEFSDYPGIHEPLEP 76

Query: 356 EFKYIGNMHGNEVLGRELLIQLCEFLCEEYRQRNERIVRLIHNTRIHILPSMNPDGYEV- 532
           E KY+GNMHGNEVLGRELL+QL EFLCEE+R RN+RIVRL+ +TRIHI+PSMNPDGYEV 
Sbjct: 77  EVKYVGNMHGNEVLGRELLLQLSEFLCEEFRNRNQRIVRLVEDTRIHIMPSMNPDGYEVA 136

Query: 533 AAEQGPDANGYLTGRNNANGVDLNRNFPDLNTYMYYNEKSGGPNHHIPLPDNW 691
           AA Q  D +GYL GRNNANGVDLNRNFPDLNTY+YYNEK+GGPNHH PLPDNW
Sbjct: 137 AAAQERDISGYLVGRNNANGVDLNRNFPDLNTYIYYNEKNGGPNHHFPLPDNW 189