miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|108913530|gb|EC342467.1|EC342467 GACCTCACTGGTATTCCTGCAGAAGTGGATAATCATTTTAACAATATTCTTTTCAGCCCATACCTTCTTGGGAATACAAT
TGTCTAACTTTTTATTTTTGGTCTGGCTGTTGTGGTGTGCAAAACTTCCTATGTTGCTTTTTTGCCACACTGCAACACTT
TACAGATGTGGAAGATGTGAAATTTGTCATCAATTATGACTACCCTAACTCTTCAGAGGATTATATCCACCGAATTGGAC
GAACTGCCCGTAGTACCAAAACAGGCACAGCATACACTTTCTTTACACCTAATAACATAAAACAAGTAAGCGACCTCATC
TCTGTGCTTCGGGAGGCTAATCAAGCAATCAATCCCAAATTGCTTCAGTTAATTGAAGACAGAGGTTCAGGTCGTTCCAG
GGGTAGAGGAGGCATGAAGGATGATCGACGGGACAGATACTCTGCGGGCAAAAGGGGTGGATTTAATACCTTTAGGGACA
GGGAAAATTATGACAGAGGTTATTCTAGTCTGCTTAAGAGAGATTTTGGGGCAAAAACTCAGAATGGTGTCTACAGTGCT
GCAAGTTACACCAATGGGAGCTTTGGAAGTAATNTTGTGTCTGC




Most similar to sp|A5A6J2|DDX5_PANTR

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|A5A6J2|DDX5_PANTR Probable ATP-dependent RNA helicase DDX5
           OS=Pan troglodytes GN=DDX5 PE=2 SV=1
          Length = 614

 Score =  243 bits (621), Expect = 5e-64
 Identities = 123/146 (84%), Positives = 125/146 (85%)
 Frame = +3

Query: 165 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 344
           DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ
Sbjct: 406 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 465

Query: 345 AINPKLLQLIEXXXXXXXXXXXXXXXXXXXXYSAGKRGGFNTFRDRENYDRGYSSLLKRD 524
           AINPKLLQL+E                    YSAGKRGGFNTFRDRENYDRGYSSLLKRD
Sbjct: 466 AINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDRENYDRGYSSLLKRD 525

Query: 525 FGAKTQNGVYSAASYTNGSFGSNXVS 602
           FGAKTQNGVYSAA+YTNGSFGSN VS
Sbjct: 526 FGAKTQNGVYSAANYTNGSFGSNFVS 551