miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|108920930|gb|EC349867.1|EC349867 GGAGTAGGGCTGGGGCTTCCTCCTGGAGAAGCTGGAGAAAACTGACTTGGGTGTCCTTGGCTTCTGAAGGGAAGAGAAGT
CAGGGCTGGAGAAGAAGGGGGTGCTTCTGAAGAAACAGGCCCAGGAAGATGTCCAAAGTGTTCCGGGTCCTTTTCCGGCT
CCTGTTGCTGTTAGGTGGGGTGGCTTCTGTGACATTTCAACATCATCGTTATGATGATCTCATTCGGACCTTATACAAGG
TTCACAATGAGTGCCCCCACATCACTAGAGTTTACAGCATTGGGCGCAGCGTCAAGGGAAGACATCTGTATGCCCTGGAA
TTCAGTGACTTCCCTGGAATGCATGAGCTCTTGGAGCCAGAATTTAAGTATATTGGAAACATGCATGGGAATGAAGTTCT
GGGGAGAGAGCTGCTGATCCAACTCTGTGAGTTCCTGTGCGAAGAGTACCGCCAGAGGAATGAACGCATCATCCGGCTGA
TTCACAACACAAGGATTCACATCCTGCCTTCCATGAACCCGGATGGTTATGAAGTAGCTGCAGAACAGGGCCCAGATGCC
AATGGGTATCTTACTGGCCGGAACAATGCCAATGGAGTAGACCTAAACCGAAACTTTCCGGATCTTAACACCTACATGTA
CTACAATGAGAAGAGTGGNNGCCCAACCACCACATACCCCTTCCAGACAACTGGAGAAATCAGTGGAACAGAGACTGAGC
TGTTATACAGTGGATGGATCATCACTTTGTTCTTCTGCCATCTTCANGNNNNTGCAGTGTA




Most similar to sp|Q2KJ83|CBPN_BOVIN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q2KJ83|CBPN_BOVIN Carboxypeptidase N catalytic chain OS=Bos
           taurus GN=CPN1 PE=2 SV=1
          Length = 462

 Score =  289 bits (740), Expect(2) = 1e-82
 Identities = 134/168 (79%), Positives = 150/168 (89%), Gaps = 1/168 (0%)
 Frame = +3

Query: 180 VASVTFQHHRYDDLIRTLYKVHNECPHITRVYSIGRSVKGRHLYALEFSDFPGMHELLEP 359
           VA VTF+HHRYDDL+R LYKVHNECPHITRVYSIGRSVKGRHLY LEFSD+PG+HE LEP
Sbjct: 17  VAPVTFRHHRYDDLVRMLYKVHNECPHITRVYSIGRSVKGRHLYVLEFSDYPGIHEPLEP 76

Query: 360 EFKYIGNMHGNEVLGRELLIQLCEFLCEEYRQRNERIIRLIHNTRIHILPSMNPDGYEV- 536
           E KY+GNMHGNEVLGRELL+QL EFLCEE+R RN+RI+RL+ +TRIHI+PSMNPDGYEV 
Sbjct: 77  EVKYVGNMHGNEVLGRELLLQLSEFLCEEFRNRNQRIVRLVEDTRIHIMPSMNPDGYEVA 136

Query: 537 AAEQGPDANGYLTGRNNANGVDLNRNFPDLNTYMYYNEKSGXPTTTYP 680
           AA Q  D +GYL GRNNANGVDLNRNFPDLNTY+YYNEK+G P   +P
Sbjct: 137 AAAQERDISGYLVGRNNANGVDLNRNFPDLNTYIYYNEKNGGPNHHFP 184



 Score = 39.3 bits (90), Expect(2) = 1e-82
 Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
 Frame = +2

Query: 662 PNHHIPLPDNWRNQWNRD-*AVIQWM-DHHFVL 754
           PNHH PLPDNW++Q   +  AVIQW+   +FVL
Sbjct: 179 PNHHFPLPDNWKSQVEPETQAVIQWIRSFNFVL 211


>sp|Q9JJN5|CBPN_MOUSE Carboxypeptidase N catalytic chain OS=Mus
           musculus GN=Cpn1 PE=2 SV=1
          Length = 457

 Score =  287 bits (734), Expect(2) = 5e-82
 Identities = 131/167 (78%), Positives = 148/167 (88%)
 Frame = +3

Query: 180 VASVTFQHHRYDDLIRTLYKVHNECPHITRVYSIGRSVKGRHLYALEFSDFPGMHELLEP 359
           V  VTF+HHRYDDL+RTLYKVHN+CP ITR+Y+IGRSVKGR+LY LEFSD+PG+HE LEP
Sbjct: 18  VTPVTFRHHRYDDLVRTLYKVHNQCPDITRLYNIGRSVKGRYLYVLEFSDYPGIHEPLEP 77

Query: 360 EFKYIGNMHGNEVLGRELLIQLCEFLCEEYRQRNERIIRLIHNTRIHILPSMNPDGYEVA 539
           E KY+GNMHGNEVLGRELL+QL EFLCEE+R RN+RI+RLI +TRIHILPSMNPDGYEVA
Sbjct: 78  EVKYVGNMHGNEVLGRELLLQLSEFLCEEFRNRNQRILRLIQDTRIHILPSMNPDGYEVA 137

Query: 540 AEQGPDANGYLTGRNNANGVDLNRNFPDLNTYMYYNEKSGXPTTTYP 680
           A QGP+ +GYL GRNNANGVDLNRNFPDLNTY YYN K+G P    P
Sbjct: 138 AAQGPNMSGYLVGRNNANGVDLNRNFPDLNTYFYYNSKNGGPNHHLP 184



 Score = 39.3 bits (90), Expect(2) = 5e-82
 Identities = 16/26 (61%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
 Frame = +2

Query: 662 PNHHIPLPDNWRNQWNRD-*AVIQWM 736
           PNHH+PLPDNW++Q   +  AVIQW+
Sbjct: 179 PNHHLPLPDNWKSQVEPETRAVIQWI 204


>sp|Q9EQV8|CBPN_RAT Carboxypeptidase N catalytic chain OS=Rattus
          Length = 457

 Score =  285 bits (730), Expect(2) = 1e-81
 Identities = 131/167 (78%), Positives = 146/167 (87%)
 Frame = +3

Query: 180 VASVTFQHHRYDDLIRTLYKVHNECPHITRVYSIGRSVKGRHLYALEFSDFPGMHELLEP 359
           V  VTF+HHRYDDL+RTLYKVHN+CP ITR+Y+IGRSVKGR+LY LEFSD+PG HE LEP
Sbjct: 18  VTPVTFRHHRYDDLVRTLYKVHNQCPDITRLYNIGRSVKGRYLYVLEFSDYPGTHEPLEP 77

Query: 360 EFKYIGNMHGNEVLGRELLIQLCEFLCEEYRQRNERIIRLIHNTRIHILPSMNPDGYEVA 539
           E KY+GNMHGNEVLGRELL+QL EFLCEE+R RN+RI+RLI +TRIHILPSMNPDGYEVA
Sbjct: 78  EVKYVGNMHGNEVLGRELLLQLSEFLCEEFRNRNQRILRLIQDTRIHILPSMNPDGYEVA 137

Query: 540 AEQGPDANGYLTGRNNANGVDLNRNFPDLNTYMYYNEKSGXPTTTYP 680
           A QGP+ +GYL GRNNANGVDLNRNFPDLNTY YYN K G P    P
Sbjct: 138 AAQGPNTSGYLVGRNNANGVDLNRNFPDLNTYFYYNSKYGGPNHHLP 184



 Score = 39.3 bits (90), Expect(2) = 1e-81
 Identities = 16/26 (61%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
 Frame = +2

Query: 662 PNHHIPLPDNWRNQWNRD-*AVIQWM 736
           PNHH+PLPDNW++Q   +  AVIQW+
Sbjct: 179 PNHHLPLPDNWKSQVEPETRAVIQWI 204


>sp|P15169|CBPN_HUMAN Carboxypeptidase N catalytic chain OS=Homo
           sapiens GN=CPN1 PE=1 SV=1
          Length = 458

 Score =  284 bits (727), Expect(2) = 2e-81
 Identities = 132/167 (79%), Positives = 146/167 (87%)
 Frame = +3

Query: 180 VASVTFQHHRYDDLIRTLYKVHNECPHITRVYSIGRSVKGRHLYALEFSDFPGMHELLEP 359
           VA VTF+HHRYDDL+RTLYKV NECP ITRVYSIGRSV+GRHLY LEFSD PG+HE LEP
Sbjct: 18  VAPVTFRHHRYDDLVRTLYKVQNECPGITRVYSIGRSVEGRHLYVLEFSDHPGIHEPLEP 77

Query: 360 EFKYIGNMHGNEVLGRELLIQLCEFLCEEYRQRNERIIRLIHNTRIHILPSMNPDGYEVA 539
           E KY+GNMHGNE LGREL++QL EFLCEE+R RN+RI++LI +TRIHILPSMNPDGYEVA
Sbjct: 78  EVKYVGNMHGNEALGRELMLQLSEFLCEEFRNRNQRIVQLIQDTRIHILPSMNPDGYEVA 137

Query: 540 AEQGPDANGYLTGRNNANGVDLNRNFPDLNTYMYYNEKSGXPTTTYP 680
           A QGP+  GYL GRNNANGVDLNRNFPDLNTY+YYNEK G P    P
Sbjct: 138 AAQGPNKPGYLVGRNNANGVDLNRNFPDLNTYIYYNEKYGGPNHHLP 184



 Score = 40.0 bits (92), Expect(2) = 2e-81
 Identities = 19/33 (57%), Positives = 25/33 (75%), Gaps = 2/33 (6%)
 Frame = +2

Query: 662 PNHHIPLPDNWRNQWNRD-*AVIQWM-DHHFVL 754
           PNHH+PLPDNW++Q   +  AVI+WM   +FVL
Sbjct: 179 PNHHLPLPDNWKSQVEPETRAVIRWMHSFNFVL 211


>sp|P04836|CBPE_BOVIN Carboxypeptidase E OS=Bos taurus GN=CPE PE=1
           SV=2
          Length = 475

 Score =  201 bits (511), Expect = 5e-51
 Identities = 91/159 (57%), Positives = 120/159 (75%)
 Frame = +3

Query: 189 VTFQHHRYDDLIRTLYKVHNECPHITRVYSIGRSVKGRHLYALEFSDFPGMHELLEPEFK 368
           ++F++HRY +L   L  V  +C  ++R+Y++GRS +GR L  LE SD PG+HE  EPEFK
Sbjct: 48  ISFEYHRYPELREALVSVWLQCAAVSRIYTVGRSFEGRELLVLELSDNPGVHEPGEPEFK 107

Query: 369 YIGNMHGNEVLGRELLIQLCEFLCEEYRQRNERIIRLIHNTRIHILPSMNPDGYEVAAEQ 548
           YIGNMHGNE +GRELLI L ++LC EY++ NE I++LIHNTRIHI+PS+NPDG+E AA Q
Sbjct: 108 YIGNMHGNEAVGRELLIFLAQYLCNEYQKGNETIVQLIHNTRIHIMPSLNPDGFEKAASQ 167

Query: 549 GPDANGYLTGRNNANGVDLNRNFPDLNTYMYYNEKSGXP 665
             +   +  GR+NA G+DLNRNFPDL+  +Y NEK G P
Sbjct: 168 LGELKDWFVGRSNAQGIDLNRNFPDLDRIVYINEKEGGP 206