miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|108925833|gb|EC354623.1|EC354623 GCACATGAAGAGGTTGCTGTGAACTTTAGTGGCCCTACTGCGCAGAAGCATTCAGATGTCACTTGATGATCTGTAAGGGA
ACTTGCTGAGTTGGGAATGAACTAGTGAATATGAATGCACATTCCTTGTGGTAGGTTATCACTGGGTGGGTGGCAAGATT
TAATAGAGATGGAGTGTGCATTTAATTTTTTTTACCTCACTGGTATTCCTGCAGAAGTGGATAATCATTTTAACAATATT
CTTTTCAGCCCATACCTTCTTGGGAATACAATTGTCTAACTTTTTATTTTTGGTCTGGCTGTTGTGGTGTGCAAAACTTC
CTATGTTGCTTTTTTGCCACACTGCAACACTTTACAGATGTGGAAGATGTGAAATTTGTCATCAATTATGACTACCCTAA
CTCTTCAGAGGATTATATCCACCGAATTGGACGAACTGCCCGTAGTACCAAAACAGGCACAGCATACACTTTCTTTACAC
CTAATAACATAAAACAAGTAAGCGACCTCATCTCTGTGCTTCGGGAGGCTAATCAAGCAATCAATCCCAAATTGCTTCAG
TTAATTGAAGACAGAGGTTCAGGTCGTTCCAGGGGTAGAGGAGGCATGAAGGATGATCGACGGGACAGATACTCTGCGGG
CAAAAGGGGTGGATTTAATACCTTTAGGGACAGGGAAAATTATGACAGAGGTTATTCTAGTCTGCTTAAGAGAGATTTTG
GGGCAAAAACTCAGAATGGTGTCTACAGTGCTGCAAGTTACACCAATGGGAGCTTTGGAAGTAATTTTGTGTCTGCTGGT
ATACAGACTAGTTTTAGGACTGGTAATCCAACNNGACTTACCAGAACGTATGACAGTACACAGCATATGGAAANNTGTCC
CAAATATGCACATGGCNTGACNCNGGCATATGCATATCCTGCTACTGCAGCTG




Most similar to sp|Q4R6M5|DDX5_MACFA

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q4R6M5|DDX5_MACFA Probable ATP-dependent RNA helicase DDX5
           OS=Macaca fascicularis GN=DDX5 PE=2 SV=1
          Length = 614

 Score =  277 bits (708), Expect = 9e-74
 Identities = 142/170 (83%), Positives = 145/170 (85%), Gaps = 1/170 (0%)
 Frame = +3

Query: 357 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 536
           DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ
Sbjct: 406 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 465

Query: 537 AINPKLLQLIEXXXXXXXXXXXXXXXXXXXXYSAGKRGGFNTFRDRENYDRGYSSLLKRD 716
           AINPKLLQL+E                    YSAGKRGGFNTFRDRENYDRGYSSLLKRD
Sbjct: 466 AINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDRENYDRGYSSLLKRD 525

Query: 717 FGAKTQNGVYSAASYTNGSFGSNFVSAGIQTSFRTGNPTXLTRT-YDSTQ 863
           FGAKTQNGVYSAA+YTNGSFGSNFVSAGIQTSFRTGNPT   +  YDSTQ
Sbjct: 526 FGAKTQNGVYSAANYTNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQ 575