miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|109849446|gb|DW478425.1|DW478425 GGCAGAGGACGAGACAAGTGGGGGCACCTGGAGTGAGAGATGCAGGTGGAGTAGATGGTGGAAAGGGTTGAAGCATTGGA
GTGCCGTAGGGATGTTGCGGATTGAAGGGTGGATGAAGAGCAGAGGCGGTTGGATTTGATGAAGAGGGAGGTGGCATCAT
CAATGAGGATGAAGAAGAGGAAGGGGGTGCAAAAAATGATGAAGGCTTTACGAGATTAGTCACTCGGTTGCTGCTAATTG
CTGAATCAACCAAAGGTGCAGCAGAAAGTGGAAGGGATGACACTGATGGAGCAGGAGTAGGAGAGGATATGGCAGTTGGA
GCATGAGAAAACAGAGAGGTGGTCGAGATAGAATGGTAAGGCTGTGTTGGTTTTGTACCATTTGGAGCATTACTTCCAAG
ATTCATAGCAGCACTAAAGAAGTTAACAAATGATGAATCTTGAGGAGCATCAGTAGCACGAGAGGCAGTTGCTGGTGGCT
CCAAGGGGCCTTCTATTACAGACATGCTAGGAACAGCTTCTAGTTCCTCAAATTCACTTTTGCTTGCAGATGCCTTTGGC
TTTGCAGGAACTTTTGTGTATGCATTAAGTATTCTACTAAAGAGGTTTGCAACATCCTCACATTCACGCGGATTATAGAA
CCAAATACCATTAACTTCTTGCGCAGCATTTCGATACAACAAATACGGACCTTGAACCTCATACTCGAAATCTCCCAATA
GATTCTCCACTAAATTATCTGTGTTTCGCCGATTCATTACAATGAACTGGAAACGAGGTTGTGTATTCCTCTTAACAACA
AAGAGAGATCCTTCAACATCTTTTCGACTCCATTGATTACTATCGAGGT




Most similar to sp|Q9SJF3|DCP1_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9SJF3|DCP1_ARATH mRNA-decapping enzyme-like protein
           OS=Arabidopsis thaliana GN=At1g08370 PE=2 SV=2
          Length = 367

 Score =  231 bits (589), Expect = 5e-60
 Identities = 117/166 (70%), Positives = 135/166 (81%)
 Frame = -3

Query: 847 LDSNQWSRKDVEGSLFVVKRNTQPRFQFIVMNRRNTDNLVENLLGDFEYEVQGPYLLYRN 668
           ++ +QWSRKDVEGSLFVVKR+TQPRFQFIVMNRRNTDNLVENLLGDFEYEVQGPYLLYRN
Sbjct: 48  IELSQWSRKDVEGSLFVVKRSTQPRFQFIVMNRRNTDNLVENLLGDFEYEVQGPYLLYRN 107

Query: 667 AAQEVNGIWFYNPRECEDVANLFSRILNAYTKVXXXXXXXXXXSEFEELEAVPSMSVIEG 488
           A+QEVNGIWFYN RECE+VA LF+RIL+AY+KV          SEFEELEA P+M+V++G
Sbjct: 108 ASQEVNGIWFYNKRECEEVATLFNRILSAYSKVNQKPKASSSKSEFEELEAKPTMAVMDG 167

Query: 487 PLEPPATASRATDAPQDSSFVNFFSAAMNLGSNAPNGTKPTQPYHS 350
           PLEP +T   A DAP D +FVNFFS+ MNLG+ A      + PY S
Sbjct: 168 PLEPSST---ARDAPDDPAFVNFFSSTMNLGNTASGSA--SGPYQS 208