miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|11048293|gb|BF167941.1|BF167941 TCCGGATCCCGGAAGCACGCCTCGCTCTCCTGCTGCGGCACGGGCTCTTCCTGGGGCGTGTTGCGGCTCTCCTGGCACGC
ACTCGCCACCGGGCCGCGAGCTGAGTGGAATCCCGTCTATGGCGGAGATGGAGAGCGCCGTGGAAGGCCGCACGGCCAGC
GTGCTGTTCGCGGGGTTCCGGGCCTTGGGGCTGTTCAGCAACGAGGTTCCACACGTGGTGCGGTACAGCGCGCTCAAGCG
CCGCTTCTACGTGACGACTTGCGTGGGCAAGAGCTTCCACACATATGACGTTCAGAAACTTAGTCTGGTTGCAGTAAGTA
ACTCTGTTCCACAGGATATCTGTTGCATGGCAGCCGATGGGAGGCTAGTCTTCGCTGCATATGGGAACGTTTTCTCTGCA
TTTGCCCGGAATAACAGAGATAGTACATACTTTTAAGGGCCATAAGGCAGACAATACATCTTTTGCAACCCTTTGGGGAT
CACGTTATCTCAGTGGATACTGACAGCGTTCTTATTATTTGGCACATTTATTCAGAAGAAGAATACCTTCAGGCTGACTT
TTGACAAAGTCAGTTTTTAAAATCTCTACAATTTTGCAATCCAAGCACCTATTTGAATAAAGTCCTACTGGGCAGTGAGC
AGGGAAGCCTACAGTTATGGAATATAAGTCCAATAAGCTTCTATTTACATTTCCCGGTGGCACGTTGGGGTGAGAGTTCN
TTCACCGGCCCGGGTGGGGATTTGTTGCCTGGCTGGCGCTCGGCAAGTGCCTCCCCACTTCAGTTGCTCACCTATGATTT
CCTCCGACGGGGCCATTAATCCTTACTGCAGAGGGCCAAAAGTGGCGGACCGTGCATGGACTGGCGGGAACACTATATCA
GCGACGCTCCGCGCCTGCCGACCACACGCGTACGCGAATAATACCTCCACACACACAGGCTCAATATCGCGTGCACTCCA
GCTTGCGCGCTC




Most similar to sp|Q8NI36|WDR36_HUMAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8NI36|WDR36_HUMAN WD repeat_field-containing protein 36 OS=Homo
           sapiens GN=WDR36 PE=1 SV=1
          Length = 951

 Score =  195 bits (495), Expect = 5e-49
 Identities = 108/168 (64%), Positives = 117/168 (69%)
 Frame = +2

Query: 74  GTHSPPGRELSGIPSMAEMESAVEGRTASVLFAGFRALGLFSNEVPHVVRYSALKRRFYV 253
           GT  P G EL G    A ME A E RTAS LFAGFRALGLFSN++PHVVR+SALKRRFYV
Sbjct: 39  GTCFPSGPELRGAGIAAAMERASERRTASALFAGFRALGLFSNDIPHVVRFSALKRRFYV 98

Query: 254 TTCVGKSFHTYDVQKLSLVAVSNSVPQDICCMAADGRLVFAAYGNVFSAFARNNRDSTYF 433
           TTCVGKSFHTYDVQKLSLVAVSNSVPQDICCMAADGRLVFAAYGNVFSAFARN      F
Sbjct: 99  TTCVGKSFHTYDVQKLSLVAVSNSVPQDICCMAADGRLVFAAYGNVFSAFARNKEIVHTF 158

Query: 434 *GP*GRQYIFCNPLGITLSQWILTAFLLFGTFIQKKNTFRLTFDKVSF 577
            G    +  F  P G  +        L+      ++   +LTFDK  F
Sbjct: 159 KGH-KAEIHFLQPFGDHIISVDTDGILIIWHIYSEEEYLQLTFDKSVF 205



 Score =  112 bits (280), Expect = 4e-24
 Identities = 55/81 (67%), Positives = 61/81 (75%)
 Frame = +1

Query: 454 IHLLQPFGDHVISVDTDSVLIIWHIYSEEEYLQADF*QSQFLKSLQFCNPSTYLNKVLLG 633
           IH LQPFGDH+ISVDTD +LIIWHIYSEEEYLQ  F +S F K     +PSTYLNK+LLG
Sbjct: 165 IHFLQPFGDHIISVDTDGILIIWHIYSEEEYLQLTFDKSVF-KISAILHPSTYLNKILLG 223

Query: 634 SEQGSLQLWNISPISFYLHFP 696
           SEQGSLQLWN+        FP
Sbjct: 224 SEQGSLQLWNVKSNKLLYTFP 244