miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|112278043|gb|AM319321.1|AM319321 GTGTAACTAGCCTGCTAGTTAGCAAGTAGGCTAAGCTTTCCCCTATGTCCTCTACAGAAAGCTTCAGTTCAGCTGTCACC
GATTGGCTTTTTATCAATTCCTGGTGGATCCTGCTTCCTTTTATTATGCTCCTTATAGTGGTCGCCTTCATCGTTGCCTT
TGTGTTGCTGCTTTACATGATATCGCCGCTCATCAGTCCGAAGCCTCTGAAATTAAACGGGGCCCACGTCGTGGTGACCG
GAGGCTCAGGTGGAATTGGGAAATGCATTGCGATCGAATGCTACAGACAAGGAGCCTTTATCACTCTGGTGGCTCGTGAT
GAGGATAAGTTACTCCGAGCAAAGAAAGAGGTGGAAAAATTTGCCATCAATGACAAACAGGTGGTGCTCTGTGTATCGGT
CGACGTCTCCAGTGATTACACTCAAGTGGAAAATGTGATAAAGCAGGCTCAGGAGAAGCTTGGACCGGTGGACATGCTGG
TGAACTGCGCTGGAACAGCCGTCGCTGGGAAGTTCGAGGAGATGGAAGTGGAACGTTTCAAAGAGTTAATGGAGCTGAAT
TACCTGGGCAGCGTCTACCCAACACGAGCCGTCATAACCACCATGAAGGAGCGAAGAATGGGTCGAATCGTGTTCGTGTC
GTCCCAGGCGGGCCAGATCGGTCTTTTCGGATACACGGCCTACTCGCCTTCAAAGTTCGCTCTGCG




Most similar to sp|Q6GV12|KDSR_MOUSE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q6GV12|KDSR_MOUSE 3-ketodihydrosphingosine reductase OS=Mus
           musculus GN=Kdsr PE=2 SV=1
          Length = 332

 Score =  287 bits (735), Expect = 4e-77
 Identities = 141/177 (79%), Positives = 160/177 (90%)
 Frame = +3

Query: 174 YMISPLISPKPLKLNGAHVVVTGGSGGIGKCIAIECYRQGAFITLVARDEDKLLRAKKEV 353
           YM+SPLISPKPL L GAHVVVTGGS GIGKCIAIECY+QGAFITLVAR+EDKLL+AKK++
Sbjct: 17  YMVSPLISPKPLALPGAHVVVTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKDI 76

Query: 354 EKFAINDKQVVLCXXXXXXXXYTQVENVIKQAQEKLGPVDMLVNCAGTAVAGKFEEMEVE 533
           EK +INDKQVVLC        Y QVENVIKQAQEKLGPVDMLVNCAGT+++GKFEE+EV 
Sbjct: 77  EKHSINDKQVVLCISVDVSQDYNQVENVIKQAQEKLGPVDMLVNCAGTSMSGKFEELEVS 136

Query: 534 RFKELMELNYLGSVYPTRAVITTMKERRMGRIVFVSSQAGQIGLFGYTAYSPSKFAL 704
            F++LM +NYLGSVYP+RAVITTMKERR+GRIVFVSSQAGQ+GLFG+TAYS SKFA+
Sbjct: 137 SFEKLMSINYLGSVYPSRAVITTMKERRVGRIVFVSSQAGQLGLFGFTAYSSSKFAI 193