miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|112279224|gb|AM308023.1|AM308023 CGCTTTGTTACGAGACGACAGACACCCCCGCGGCATGCTAAATGAACGTTATACGCGTTTGATTAACTGCCAACCCCCCC
GGAGCAAAGTTCATTTCCCCTGAGCTCGTGTTTTTTGCCCTCTCCCCTCTCGAGGCCGCTGTCAGCCCTGTTGTTTAGTT
TTATTGTTGAACCCGTGTAACTAGCCTGCTAGTTAGCAAGTAGGCTAAGCTTTCCCCTATGTCCTCTACAGAAAGCTTCA
GTTCAGCTGTCACCGATTGGCTTTTTATCAATTCCTGGTGGATCCTGCTTCCTTTTATTATGCTCCTTATAGTGGTCGCC
TTCATCGTTGCCTTTGTGTTGCTGCTTTACATGATATCGCCGCTCATCAGTCCGAAGCCTCTGAAATTAAACGGGGCCCA
CGTCGTGGTGACCGGAGGCTCAGGTGGAATTGGGAAATGCATTGCGATCGAATGCTACAGACAAGGAGCCTTTATCACTC
TGGTGGCTCGTGATGAGGATAAGTTACTCCGAGCAAAGAAAGAGGTGGAAAAATTTGCCATCAATGACAAACAGGTGGTG
CTCTGTGTATCGGTCGACGTCTCCAGTGATTACACTCAAGTGGAAAATGTGATAAAGCAGGCTCAGGAGAAGCTTGGACC
GGTGGACATGCTGGTGAACTGCGCTGGAACAGCCGTCGCTGGGAAGTTCGAGGAGATGGAAGTGGAACGTTTC




Most similar to sp|Q6GV12|KDSR_MOUSE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q6GV12|KDSR_MOUSE 3-ketodihydrosphingosine reductase OS=Mus
           musculus GN=Kdsr PE=2 SV=1
          Length = 332

 Score =  196 bits (499), Expect = 1e-49
 Identities = 96/122 (78%), Positives = 107/122 (87%)
 Frame = +3

Query: 348 YMISPLISPKPLKLNGAHVVVTGGSGGIGKCIAIECYRQGAFITLVARDEDKLLRAKKEV 527
           YM+SPLISPKPL L GAHVVVTGGS GIGKCIAIECY+QGAFITLVAR+EDKLL+AKK++
Sbjct: 17  YMVSPLISPKPLALPGAHVVVTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKDI 76

Query: 528 EKFAINDKQVVLCXXXXXXXXYTQVENVIKQAQEKLGPVDMLVNCAGTAVAGKFEEMEVE 707
           EK +INDKQVVLC        Y QVENVIKQAQEKLGPVDMLVNCAGT+++GKFEE+EV 
Sbjct: 77  EKHSINDKQVVLCISVDVSQDYNQVENVIKQAQEKLGPVDMLVNCAGTSMSGKFEELEVS 136

Query: 708 RF 713
            F
Sbjct: 137 SF 138