miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|112331995|gb|AM305929.1|AM305929 GCGCTTTGTTACGAGACGACAGACACCCCCGCGGCATGCTAAATGAACGTTATACGCGTTTGATTAACTGCCAACCCCCC
CGGAGCAAAGTTCATTTCCCCTGAGCTCGTGTTTTTTGCCCTCTCCCCTCTCGAGGCCGCTGTCAGCCCTGTTGTTTAGT
TTTATTGTTGAACCCGTGTAACTAGCCTGCTAGTTAGCAAGTAGGCTAAGCTTTCCCCTATGTCCTCTACAGAAAGCTTC
AGTTCAGCTGTCACCGATTGGCTTTTTATCAATTCCTGGTGGATCCTGCTTCCTTTTATTATGCTCCTTATAGTGGTCGC
CTTCATCGTTGCCTTTGTGTTGCTGCTTTACATGATATCGCCGCTCATCAGTCCGAAGCCTCTGAAATTAAACGGGGCCC
ACGTCGTGGTGACCGGAGGCTCAGGTGGAATTGGGAAATGCATTGCGATCGAATGCTACAGACAAGGAGCCTTTATCACT
CTGGTGGCTCGTGATGAGGATAAGTTACTCCGAGCAAAGAAAGAGGTGGAAAAATTTGCCATCAATGACAAACAGGTGGT
GCTCTGTGTATCGGTCGACGTCTCCAGTGATTACACTCAAGTGGAAAATGTGATAAAGCAGGCTCAGGAGAAGCTTGGAC
CGGTGGACATGCTGGTGAACTGCGCTGGAACAGCCGTCGCTGGGAAGTTCGAGGAGATGGAAGTGGAACGTTTCAAAGAG
TTAATGGAGCTGAATTACCTGGGC




Most similar to sp|Q6GV12|KDSR_MOUSE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q6GV12|KDSR_MOUSE 3-ketodihydrosphingosine reductase OS=Mus
           musculus GN=Kdsr PE=2 SV=1
          Length = 332

 Score =  210 bits (535), Expect = 7e-54
 Identities = 102/132 (77%), Positives = 116/132 (87%)
 Frame = +1

Query: 349 YMISPLISPKPLKLNGAHVVVTGGSGGIGKCIAIECYRQGAFITLVARDEDKLLRAKKEV 528
           YM+SPLISPKPL L GAHVVVTGGS GIGKCIAIECY+QGAFITLVAR+EDKLL+AKK++
Sbjct: 17  YMVSPLISPKPLALPGAHVVVTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKDI 76

Query: 529 EKFAINDKQVVLCXXXXXXXXYTQVENVIKQAQEKLGPVDMLVNCAGTAVAGKFEEMEVE 708
           EK +INDKQVVLC        Y QVENVIKQAQEKLGPVDMLVNCAGT+++GKFEE+EV 
Sbjct: 77  EKHSINDKQVVLCISVDVSQDYNQVENVIKQAQEKLGPVDMLVNCAGTSMSGKFEELEVS 136

Query: 709 RFKELMELNYLG 744
            F++LM +NYLG
Sbjct: 137 SFEKLMSINYLG 148