miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|113716829|gb|BX878797.3|BX878797 TAAACGCACTGGCCCCGCACACTTTTTATTTCGCTTTTTCCTATTGTCATGTTTATTTGTGCTATCGCTCGCAACGGAAC
TTAGCTTTGTGACTTGCGGCTCGGTCGTGAAGCTGTTAAATGTAAAGCACAATGTCAGACTGCACTCTCACGACGTGCGC
TACGGATCTGGTAGCGGGCAGCAGTCAGTGACAGGGGTGACCACAGTGGAGGACAGCAACAGTTACTGGAGTGTACGGGG
CACCAGTGGGGCCCTATGTCACCGGGGGACTCCTGTTAAGTGTGGTCAGACCATCCGCCTCACCCACCTCAACACCGGAC
GCAACCTGCACAGCCACTACTTTGCTTCTCCGCTGTCCTCCAACCAGGAGGTGAGTGCGTTTGGTGAGGAGGGCGAGGGG
GACCACCTGGATGAGTGGATGGTGCAGTGCGAAGGGTTGGTATGGGAGCGTGAGGAAGCCGTCCGCTTCCAGCATGCCTC
CACTGATACGTTGCTATCTGTTACGGGGGAGCAGTACGGCCGGCCCATCCACGGGCAGAGGGAGGTGCACGCTATGACGG
GCCCCAGCCAGCACAGCCTGTGGAGGGCCATGGAGGGGGTGTTTATGAAGCCCAGTGAAAGCCCACTAGGGGACATGGAC
TACAGCCATCCTCTACACACAGAGTTCTAATTCTCAATCAACCTGTTACCTGACCCACCTAGCGCTTAGCTAACAAACTA
CTCAGTGTTTCTTAATCCTGTTTCTGGGGACCCAAAGCTGAATGGTTTAGTTTTTTGCCTTTACACTACACACCTGA




Most similar to sp|Q9DCT5|SDF2_MOUSE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9DCT5|SDF2_MOUSE Stromal cell-derived factor 2 OS=Mus musculus
           GN=Sdf2 PE=2 SV=1
          Length = 211

 Score =  268 bits (684), Expect = 4e-71
 Identities = 122/183 (66%), Positives = 143/183 (78%)
 Frame = +2

Query: 71  ATELSFVTCGSVVKLLNVKHNVRLHSHDVRYXXXXXXXXXXXXXXXEDSNSYWSVRGTSG 250
           A+ ++ VTCGSVVKLLN +HNVRLHSHDVRY               +DSNSYW +RG + 
Sbjct: 18  ASNMAVVTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYWRIRGKTA 77

Query: 251 ALCHRGTPVKCGQTIRLTHLNTGRNLHSHYFASPLSSNQEVSAFGEEGEGDHLDEWMVQC 430
            +C RGTP+KCGQ IRLTH+NTGRNLHSH+F SPLS NQEVSAFGEEGEGD+LD+W V C
Sbjct: 78  TVCERGTPIKCGQPIRLTHINTGRNLHSHHFTSPLSGNQEVSAFGEEGEGDYLDDWTVLC 137

Query: 431 EGLVWEREEAVRFQHASTDTLLSVTGEQYGRPIHGQREVHAMTGPSQHSLWRAMEGVFMK 610
            G  W R+  VRF+H+STD LLSVTGEQYGRPI GQ+EVH M  PSQ++ W+AMEG+FMK
Sbjct: 138 NGPYWVRDGEVRFKHSSTDVLLSVTGEQYGRPISGQKEVHGMAQPSQNNYWKAMEGIFMK 197

Query: 611 PSE 619
           PSE
Sbjct: 198 PSE 200