miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|114437623|gb|EE751523.1|EE751523 CCCCACTTTCAACCTCAATGGTATTCCTACAGGGAATGGATAACCATTTTAACTGTATTTTTTGCAGCCCATACCTTCTT
GGGAATACAATTGTCTAACTTTTTATTTTTGGTCTGGCTGTTGTGGTGTGCAAAACCCTGTACATTGCTATTTTGCCACA
CTGCAACACCTTACAGATGTGGAAGATGTGAAATTTGTCATCAATTATGACTACCCTAACTCCTCAGAGGATTATATTCA
TCGAATTGGAAGAACTGCTCGCAGTACCAAAACAGGCACAGCATACACTTTCTTTACACCTAATAACATAAAGCAAGTGA
GCGACCTTATCTCTGTGCTTCGGGAAGCTAATCAAGCAATTAATCCTAAGTTGCTTCAGTTGGTCGAAGACAGAGGTTCA
GGTCGATCCAGGGGTAGAGGAGGCATGAAGGATGACCGGCGGGACAGATACTCTGCGGGCAAAAGGGGTGGATTTAATAC
ATTTAGAGACAGGGAAAATTATGACCGCGGTTACTCTAGTCTGCTTAAGAGAGATTTTGGGGCAAAAACTCAGAATGGTG
TTTACAGTGCTGCAAATTACACCAATGGGAGCTTTG




Most similar to sp|A5A6J2|DDX5_PANTR

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|A5A6J2|DDX5_PANTR Probable ATP-dependent RNA helicase DDX5
           OS=Pan troglodytes GN=DDX5 PE=2 SV=1
          Length = 614

 Score =  237 bits (604), Expect = 5e-62
 Identities = 120/140 (85%), Positives = 120/140 (85%)
 Frame = +2

Query: 176 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 355
           DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ
Sbjct: 406 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 465

Query: 356 AINPKLLQLVEXXXXXXXXXXXXXXXXXXXXYSAGKRGGFNTFRDRENYDRGYSSLLKRD 535
           AINPKLLQLVE                    YSAGKRGGFNTFRDRENYDRGYSSLLKRD
Sbjct: 466 AINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDRENYDRGYSSLLKRD 525

Query: 536 FGAKTQNGVYSAANYTNGSF 595
           FGAKTQNGVYSAANYTNGSF
Sbjct: 526 FGAKTQNGVYSAANYTNGSF 545