miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|114444453|gb|EE757337.1|EE757337 CTACTGCGCAGAAGCATTCAGATGTCACTTGATGATCTGTAAGGGGACTTGCTAATTTGGGAATGTTAGGAAATACACAC
GTCCTTTTGACACGCTCCATCATTGGGTGGGTAATAAGGTATACAGATGACGTGTGCTTTTTCTTTGTTTTTTTTCTTCC
CCACTTTCAACCTCAATGGTATTCCTACAGGGAATGGATAACCATTTTAACTGTATTTTTTGCAGCCCATACCTTCTTGG
GAATACAATTGTCTAACTTTTTATTTTTGGTCTGGCTGTTGTGGTGTGCAAAACCCTGTACATTGCTATTTTGCCACACT
GCAACACCTTACAGATGTGGAAGATGTGAAATTTGTCATCAATTATGACTACCCTAACTCCTCAGAGGATTATATTCATC
GAATTGGAAGAACTGCTCGCAGTACCAAAACAGGCACAGCATACACTTTCTTTACACCTAATAACATAAAGCAAGTGAGC
GACCTTATCTCTGTGCTTCGGGAAGCTAATCAAGCAATTAATCCTAAGTTGCTTCAGTTGGTCGAAGACAGAGGTTCAGG
TCGATCCAGGGGTAGAGGAGGCATGAAGGATGACCGGCGGGACAGATACTCTGCGGGCAAAGGGGTGGATTTAATACATT
TAGAGACAGGGAAATTATGACCGCGGTTACTCTAGTCTGCTTAAGAGAGATTTGGGGCAAAAACTCAGAATGGTGTTTAC
AGTGCTGCAATTACACCAATGGGAGCTTTGGAAGTAATTTCGTGTCTGCTGGTATACAGACCAGTTTTAGGACTGGTAAT
CCAACAGGGACTTACCAGAACGGTTATGATAGCACTCAGCATATGGAAGTACGTTCCAAT




Most similar to sp|A5A6J2|DDX5_PANTR

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|A5A6J2|DDX5_PANTR Probable ATP-dependent RNA helicase DDX5
           OS=Pan troglodytes GN=DDX5 PE=2 SV=1
          Length = 614

 Score =  159 bits (402), Expect = 2e-38
 Identities = 92/133 (69%), Positives = 94/133 (70%), Gaps = 1/133 (0%)
 Frame = +1

Query: 334 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 513
           DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ
Sbjct: 406 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 465

Query: 514 AINPKLLQLVEXXXXXXXXXXXXXXXXXXXXYSAGKGVDLIHLETGKL*PRLL*SA*ER- 690
           AINPKLLQLVE                    YSAGK          +   R   S  +R 
Sbjct: 466 AINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDRENYDRGYSSLLKRD 525

Query: 691 FGAKTQNGVYSAA 729
           FGAKTQNGVYSAA
Sbjct: 526 FGAKTQNGVYSAA 538