miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|114468955|gb|EE781323.1|EE781323 AAGGTCTTGGCAAGACAAGCAGTGTGGCCAGAATTTTGAACTTCTGATGAGTGTGTAACGCAAAGGACCATGTACATTTT
TGATGAAAGGTCCTCAAAATGAGAGCACACAAGGAGGTTGCTGTGAACTTTTAAGTGGCCCTACTGCGCAGAAGCATTCA
GATGTCACTTGATGATCTGTAAGGGGACTTGCTAATTTGGGAATGTTAGGAAATACACACGTCCTTTTGACACGCTCCAT
CATTGGGTGGGTAATAAGGTATACAGATGACGTGTGCTTTTTCTTTGTTTTTTTTCTTCCCCACTTTCAACCTCAATGGT
ATTCCTACAGGGAATGGATAACCATTTTAACTGTATTTTTTGCAGCCCATACCTTCTTGGGAATACAATTGTCTAACTTT
TTATTTTTGGTCTGGCTGTTGTGGTGTGCAAAACCCTGTACATTGCTATTTTGCCACACTGCAACACCTTACAGATGTGG
AAGATGTGAAATTTGTCATCAATTATGACTACCCTAACTCCTCAGAGGATTATATTCATCGAATTGGAAGAACTGCTCGC
AGTACCAAAACAGGCACAGCATACACTTTCTTTACACCTAATAACATAAAGCAAGTGAGCGACCTTATCTCTGTGCTTCG
GGAAGCTAATCAAGCAATTAATCCTAAGTTGCTTCAGTTGGTCGAAGACAGAGGTTCAGGTCGATCCAGGGGTAGAGGAG
GCATGAAGGATGACCGGCGGGACAGATACTCTGCGGGCAAAGGGGTGGATTTAATACATTTAGAGACAGGGAAATTATGA
CCGCGGTTACTCTAGTCTGCTTAAGAGAGATTTGGGGCAAAACTCAGATGGTGTTACAGTGCTGC




Most similar to sp|Q5R4I9|DDX5_PONAB

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q5R4I9|DDX5_PONAB Probable ATP-dependent RNA helicase DDX5
           OS=Pongo abelii GN=DDX5 PE=2 SV=1
          Length = 614

 Score =  146 bits (368), Expect(3) = 4e-41
 Identities = 76/96 (79%), Positives = 76/96 (79%)
 Frame = +3

Query: 474 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 653
           DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ
Sbjct: 406 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 465

Query: 654 AINPKLLQLVEXXXXXXXXXXXXXXXXXXXXYSAGK 761
           AINPKLLQLVE                    YSAGK
Sbjct: 466 AINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGK 501



 Score = 33.5 bits (75), Expect(3) = 4e-41
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = +1

Query: 793 NYDRGYSSLLKRDLG 837
           NYDRGYSSLLKRD G
Sbjct: 513 NYDRGYSSLLKRDFG 527



 Score = 30.8 bits (68), Expect(3) = 4e-41
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = +2

Query: 755 GQRGGFNTFRDRE 793
           G+RGGFNTFRDRE
Sbjct: 500 GKRGGFNTFRDRE 512


>sp|A5A6J2|DDX5_PANTR Probable ATP-dependent RNA helicase DDX5
           OS=Pan troglodytes GN=DDX5 PE=2 SV=1
          Length = 614

 Score =  146 bits (368), Expect(3) = 4e-41
 Identities = 76/96 (79%), Positives = 76/96 (79%)
 Frame = +3

Query: 474 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 653
           DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ
Sbjct: 406 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 465

Query: 654 AINPKLLQLVEXXXXXXXXXXXXXXXXXXXXYSAGK 761
           AINPKLLQLVE                    YSAGK
Sbjct: 466 AINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGK 501



 Score = 33.5 bits (75), Expect(3) = 4e-41
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = +1

Query: 793 NYDRGYSSLLKRDLG 837
           NYDRGYSSLLKRD G
Sbjct: 513 NYDRGYSSLLKRDFG 527



 Score = 30.8 bits (68), Expect(3) = 4e-41
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = +2

Query: 755 GQRGGFNTFRDRE 793
           G+RGGFNTFRDRE
Sbjct: 500 GKRGGFNTFRDRE 512


>sp|Q4R6M5|DDX5_MACFA Probable ATP-dependent RNA helicase DDX5
           OS=Macaca fascicularis GN=DDX5 PE=2 SV=1
          Length = 614

 Score =  146 bits (368), Expect(3) = 4e-41
 Identities = 76/96 (79%), Positives = 76/96 (79%)
 Frame = +3

Query: 474 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 653
           DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ
Sbjct: 406 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 465

Query: 654 AINPKLLQLVEXXXXXXXXXXXXXXXXXXXXYSAGK 761
           AINPKLLQLVE                    YSAGK
Sbjct: 466 AINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGK 501



 Score = 33.5 bits (75), Expect(3) = 4e-41
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = +1

Query: 793 NYDRGYSSLLKRDLG 837
           NYDRGYSSLLKRD G
Sbjct: 513 NYDRGYSSLLKRDFG 527



 Score = 30.8 bits (68), Expect(3) = 4e-41
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = +2

Query: 755 GQRGGFNTFRDRE 793
           G+RGGFNTFRDRE
Sbjct: 500 GKRGGFNTFRDRE 512


>sp|P17844|DDX5_HUMAN Probable ATP-dependent RNA helicase DDX5
           OS=Homo sapiens GN=DDX5 PE=1 SV=1
          Length = 614

 Score =  146 bits (368), Expect(3) = 4e-41
 Identities = 76/96 (79%), Positives = 76/96 (79%)
 Frame = +3

Query: 474 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 653
           DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ
Sbjct: 406 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 465

Query: 654 AINPKLLQLVEXXXXXXXXXXXXXXXXXXXXYSAGK 761
           AINPKLLQLVE                    YSAGK
Sbjct: 466 AINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGK 501



 Score = 33.5 bits (75), Expect(3) = 4e-41
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = +1

Query: 793 NYDRGYSSLLKRDLG 837
           NYDRGYSSLLKRD G
Sbjct: 513 NYDRGYSSLLKRDFG 527



 Score = 30.8 bits (68), Expect(3) = 4e-41
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = +2

Query: 755 GQRGGFNTFRDRE 793
           G+RGGFNTFRDRE
Sbjct: 500 GKRGGFNTFRDRE 512


>sp|Q61656|DDX5_MOUSE Probable ATP-dependent RNA helicase DDX5
           OS=Mus musculus GN=Ddx5 PE=1 SV=1
          Length = 614

 Score =  146 bits (368), Expect(3) = 9e-41
 Identities = 76/96 (79%), Positives = 76/96 (79%)
 Frame = +3

Query: 474 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 653
           DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ
Sbjct: 406 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 465

Query: 654 AINPKLLQLVEXXXXXXXXXXXXXXXXXXXXYSAGK 761
           AINPKLLQLVE                    YSAGK
Sbjct: 466 AINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGK 501



 Score = 32.3 bits (72), Expect(3) = 9e-41
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +1

Query: 793 NYDRGYSSLLKRDLG 837
           NYDRGYS+LLKRD G
Sbjct: 513 NYDRGYSNLLKRDFG 527



 Score = 30.8 bits (68), Expect(3) = 9e-41
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = +2

Query: 755 GQRGGFNTFRDRE 793
           G+RGGFNTFRDRE
Sbjct: 500 GKRGGFNTFRDRE 512


>sp|Q501J6|DDX17_MOUSE Probable ATP-dependent RNA helicase DDX17
           OS=Mus musculus GN=Ddx17 PE=2 SV=1
          Length = 650

 Score =  125 bits (315), Expect = 3e-28
 Identities = 59/71 (83%), Positives = 64/71 (90%)
 Frame = +3

Query: 474 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 653
           DVEDVKFVINYDYPNSSEDY+HRIGRTARST  GTAYTFFTP N+KQ  +LI VL EANQ
Sbjct: 404 DVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQ 463

Query: 654 AINPKLLQLVE 686
           AINPKL+QLV+
Sbjct: 464 AINPKLMQLVD 474