miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|114473824|gb|EE786192.1|EE786192 TTAGGAAATACACACGTCCTTTTGACACGCTCCATCATTGGGTGGGTAATAAGGTATACAGATGACGTGTGCTTTTTCTT
TGTTTTTTTTTCTTCCCCACTTTCAACCTCAATGGTATTCCTACAGGGAATGGATAACCATTTTAACTGTATTTTTTGCA
GCCCATACCTTCTTGGGAATACAATTGTCTAACTTTTTATTTTTGGTCTGGCTGTTGTGGTGTGCAAAACCCTGTACATT
GCTATTTTGCCACACTGCAACACCTTACAGATGTGGAAGATGTGAAATTTGTCATCAATTATGACTACCCTAACTCCTCA
GAGGATTATATTCATCGAATTGGAAGAACTGCTCGCAGTACCAAAACAGGCACAGCATACACTTTCTTTACACCTAATAA
CATAAAGCAAGTGAGCGACCTTATCTCTGTGCTTCGGGAAGCTAATCAAGCAATTAATCCTAAGTTGCTTCAGTTGGTCG
AAGACAGAGGTTCAGGTCGATCCAGGGGTAGAGGAGGCATGAAGGATGACCGGCGGGACAGATACTCTGCGGGCAAAAGG
GGTGGATTTAATACATTTAGAGACAGGGAAAATTATGACCGCGGTTACTCTAGTCTGCTTAAGAGAGATTTTGGGGCAAA
AACTCAGAATGGTGTTTACAGTGCTGCAAATTACACCAATGGGAGCTTTGGAAGTAATTTCGTGTCTGCTGGTATACAGA
CCAGTTTTAGGACTGGTAATCCAACAGGGACTTACCAGAACGGTTATGATAGCACTCAGCGATATGGAAGTAACGTTCCA
ATATGCACAATGGTATGAACAACAGGCATATGCATATCCTGCTACTGCAGCTGCGCCTATGATTGGTTATCCGATGCCAA
CAGGATATCCTCATAAGACTTTAAAGTATATGTAATGTCTGT




Most similar to sp|Q4R6M5|DDX5_MACFA

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q4R6M5|DDX5_MACFA Probable ATP-dependent RNA helicase DDX5
           OS=Macaca fascicularis GN=DDX5 PE=2 SV=1
          Length = 614

 Score =  312 bits (799), Expect(2) = 8e-86
 Identities = 156/177 (88%), Positives = 157/177 (88%)
 Frame = +3

Query: 270 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 449
           DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ
Sbjct: 406 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 465

Query: 450 AINPKLLQLVEXXXXXXXXXXXXXXXXXXXXYSAGKRGGFNTFRDRENYDRGYSSLLKRD 629
           AINPKLLQLVE                    YSAGKRGGFNTFRDRENYDRGYSSLLKRD
Sbjct: 466 AINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDRENYDRGYSSLLKRD 525

Query: 630 FGAKTQNGVYSAANYTNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQRYGSNVP 800
           FGAKTQNGVYSAANYTNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQ+YGSNVP
Sbjct: 526 FGAKTQNGVYSAANYTNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQYGSNVP 582



 Score = 27.3 bits (59), Expect(2) = 8e-86
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +1

Query: 859 MIGYPMPTGY 888
           MIGYPMPTGY
Sbjct: 603 MIGYPMPTGY 612


>sp|P17844|DDX5_HUMAN Probable ATP-dependent RNA helicase DDX5
           OS=Homo sapiens GN=DDX5 PE=1 SV=1
          Length = 614

 Score =  312 bits (799), Expect(2) = 8e-86
 Identities = 156/177 (88%), Positives = 157/177 (88%)
 Frame = +3

Query: 270 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 449
           DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ
Sbjct: 406 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 465

Query: 450 AINPKLLQLVEXXXXXXXXXXXXXXXXXXXXYSAGKRGGFNTFRDRENYDRGYSSLLKRD 629
           AINPKLLQLVE                    YSAGKRGGFNTFRDRENYDRGYSSLLKRD
Sbjct: 466 AINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDRENYDRGYSSLLKRD 525

Query: 630 FGAKTQNGVYSAANYTNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQRYGSNVP 800
           FGAKTQNGVYSAANYTNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQ+YGSNVP
Sbjct: 526 FGAKTQNGVYSAANYTNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQYGSNVP 582



 Score = 27.3 bits (59), Expect(2) = 8e-86
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +1

Query: 859 MIGYPMPTGY 888
           MIGYPMPTGY
Sbjct: 603 MIGYPMPTGY 612


>sp|Q5R4I9|DDX5_PONAB Probable ATP-dependent RNA helicase DDX5
           OS=Pongo abelii GN=DDX5 PE=2 SV=1
          Length = 614

 Score =  310 bits (795), Expect(2) = 2e-85
 Identities = 155/177 (87%), Positives = 156/177 (88%)
 Frame = +3

Query: 270 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 449
           DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ
Sbjct: 406 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 465

Query: 450 AINPKLLQLVEXXXXXXXXXXXXXXXXXXXXYSAGKRGGFNTFRDRENYDRGYSSLLKRD 629
           AINPKLLQLVE                    YSAGKRGGFNTFRDRENYDRGYSSLLKRD
Sbjct: 466 AINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDRENYDRGYSSLLKRD 525

Query: 630 FGAKTQNGVYSAANYTNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQRYGSNVP 800
           FGAKTQNG YSAANYTNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQ+YGSNVP
Sbjct: 526 FGAKTQNGAYSAANYTNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQYGSNVP 582



 Score = 27.3 bits (59), Expect(2) = 2e-85
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +1

Query: 859 MIGYPMPTGY 888
           MIGYPMPTGY
Sbjct: 603 MIGYPMPTGY 612


>sp|A5A6J2|DDX5_PANTR Probable ATP-dependent RNA helicase DDX5
           OS=Pan troglodytes GN=DDX5 PE=2 SV=1
          Length = 614

 Score =  310 bits (794), Expect(2) = 3e-85
 Identities = 155/177 (87%), Positives = 156/177 (88%)
 Frame = +3

Query: 270 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 449
           DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ
Sbjct: 406 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 465

Query: 450 AINPKLLQLVEXXXXXXXXXXXXXXXXXXXXYSAGKRGGFNTFRDRENYDRGYSSLLKRD 629
           AINPKLLQLVE                    YSAGKRGGFNTFRDRENYDRGYSSLLKRD
Sbjct: 466 AINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDRENYDRGYSSLLKRD 525

Query: 630 FGAKTQNGVYSAANYTNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQRYGSNVP 800
           FGAKTQNGVYSAANYTNGSFGSNFVSAGIQ SFRTGNPTGTYQNGYDSTQ+YGSNVP
Sbjct: 526 FGAKTQNGVYSAANYTNGSFGSNFVSAGIQASFRTGNPTGTYQNGYDSTQQYGSNVP 582



 Score = 27.3 bits (59), Expect(2) = 3e-85
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +1

Query: 859 MIGYPMPTGY 888
           MIGYPMPTGY
Sbjct: 603 MIGYPMPTGY 612


>sp|Q61656|DDX5_MOUSE Probable ATP-dependent RNA helicase DDX5
           OS=Mus musculus GN=Ddx5 PE=1 SV=1
          Length = 614

 Score =  308 bits (789), Expect(2) = 1e-84
 Identities = 154/176 (87%), Positives = 156/176 (88%)
 Frame = +3

Query: 270 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 449
           DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ
Sbjct: 406 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 465

Query: 450 AINPKLLQLVEXXXXXXXXXXXXXXXXXXXXYSAGKRGGFNTFRDRENYDRGYSSLLKRD 629
           AINPKLLQLVE                    YSAGKRGGFNTFRDRENYDRGYS+LLKRD
Sbjct: 466 AINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDRENYDRGYSNLLKRD 525

Query: 630 FGAKTQNGVYSAANYTNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQRYGSNV 797
           FGAKTQNGVYSAANYTNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQ+YGSNV
Sbjct: 526 FGAKTQNGVYSAANYTNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQYGSNV 581



 Score = 27.3 bits (59), Expect(2) = 1e-84
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +1

Query: 859 MIGYPMPTGY 888
           MIGYPMPTGY
Sbjct: 603 MIGYPMPTGY 612


>sp|Q92841|DDX17_HUMAN Probable ATP-dependent RNA helicase DDX17
           OS=Homo sapiens GN=DDX17 PE=1 SV=1
          Length = 650

 Score =  128 bits (322), Expect = 5e-29
 Identities = 84/201 (41%), Positives = 103/201 (51%), Gaps = 29/201 (14%)
 Frame = +3

Query: 270 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 449
           DVEDVKFVINYDYPNSSEDY+HRIGRTARST  GTAYTFFTP N+KQ  +LI VL EANQ
Sbjct: 404 DVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQ 463

Query: 450 AINPKLLQLVEXXXXXXXXXXXXXXXXXXXXYSA-----------------GKRGGFNTF 578
           AINPKL+QLV+                     +                  G R    ++
Sbjct: 464 AINPKLMQLVDHRGGGGGGGGRSRYRTTSSANNPNLMYQDECDRRLRGVKDGGRRDSASY 523

Query: 579 RDRENYDR-------GYSSLLKRDFGAKT-----QNGVYSAANYTNGSFGSNFVSAGIQT 722
           RDR   DR       GY S     FGA+        G Y AA Y   S+ +    AG   
Sbjct: 524 RDRSETDRAGYANGSGYGS-PNSAFGAQAGQYTYGQGTYGAAAYGTSSYTAQEYGAG--- 579

Query: 723 SFRTGNPTGTYQNGYDSTQRY 785
           ++   + T T ++   S+Q++
Sbjct: 580 TYGASSTTSTGRSSQSSSQQF 600