miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|114484945|gb|EE797278.1|EE797278 TGTGCAAACCCTGTACATTGCTATTTTGCCACACTGCAACACCTTACAGATGTGGAAGATGTGAAATTTGTCATCAATTA
TGACTACCCTAACTCCTCAGAGGATTATATTCATCGAATTGGAAGAACTGCTCGCAGTACCAAAACAGGCACAGCATACA
CTTTCTTTACACCTAATAACATAAAGCAAGTGAGCGACCTTATCTCTGTGCTTCGGGAAGCTAATCAAGCAATTAATCCT
AAGTTGCTTCAGTTGGTCGAAGACAGAGGTTCAGGTCGATCCAGGGGTAGAGGAGGCATGAAGGATGACCGGCGGGACAG
ATACTCTGCGGGCAAAAGGGGTGGATTTAATACATTTAGAGACAGGGAAAATTATGACCGCGGTTACTCTAGTCTGCTTA
AGAGAGATTTTGGGGCAAAAACTCAGAATGGTGTTTACAGTGCTGCAAATTACACCAATGGGAGCTTTGGAAGTAATTTC
GTGTCTGCTGGTATACAGACCAGTTTTAGGACTGGTAATCCAACAGGGACTTACCAGAACGGTTATGATAGCACTCAGCA
ATATGGAAGTAACGTTCCAAATATGCACAATGGTATGAACCAACAGGCATATGCATATCCTGCTACTGCAGCTGCGCCTA
TGATTGGTTATCCGATGCCAACAGGATATTCTCAATAAGACTTTAGAAGTATATGTAAATGTCTGTTTTTCATAATTGCT
CTTTATATTGTGTGTTATCAGACAAGATAGTTATTTAAGAAACATGGGAAATGCAGAAATGACTGCAGTGCAGCAGTAAT
TATG




Most similar to sp|Q4R6M5|DDX5_MACFA

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9MBD8|BI1_ORYSJ Bax inhibitor 1 OS=Oryza sativa subsp. japonica
           GN=BI1 PE=2 SV=1
          Length = 249

 Score =  117 bits (293), Expect(2) = 7e-30
 Identities = 55/55 (100%), Positives = 55/55 (100%)
 Frame = +2

Query: 2   ASIFGHSTGSFMFEVYFGLLIFLGYMVYDTQEIIERAHHGDMDYIKHALTLFTDF 166
           ASIFGHSTGSFMFEVYFGLLIFLGYMVYDTQEIIERAHHGDMDYIKHALTLFTDF
Sbjct: 167 ASIFGHSTGSFMFEVYFGLLIFLGYMVYDTQEIIERAHHGDMDYIKHALTLFTDF 221



 Score = 33.5 bits (75), Expect(2) = 7e-30
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = +3

Query: 168 VAVLVRILVIMLKNASD 218
           VAVLVRILVIMLKNASD
Sbjct: 222 VAVLVRILVIMLKNASD 238


>sp|Q9LD45|BI1_ARATH Bax inhibitor 1 OS=Arabidopsis thaliana GN=BI-1
           PE=1 SV=1
          Length = 247

 Score = 91.3 bits (225), Expect(2) = 7e-21
 Identities = 42/55 (76%), Positives = 48/55 (87%)
 Frame = +2

Query: 2   ASIFGHSTGSFMFEVYFGLLIFLGYMVYDTQEIIERAHHGDMDYIKHALTLFTDF 166
           +SIFG S   F FE+YFGLLIF+GYMV DTQEIIE+AH GDMDY+KH+LTLFTDF
Sbjct: 166 SSIFGGSASIFKFELYFGLLIFVGYMVVDTQEIIEKAHLGDMDYVKHSLTLFTDF 220



 Score = 29.3 bits (64), Expect(2) = 7e-21
 Identities = 13/17 (76%), Positives = 16/17 (94%)
 Frame = +3

Query: 168 VAVLVRILVIMLKNASD 218
           VAV VRIL+IMLKN++D
Sbjct: 221 VAVFVRILIIMLKNSAD 237


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q4R6M5|DDX5_MACFA Probable ATP-dependent RNA helicase DDX5
            OS=Macaca fascicularis GN=DDX5 PE=2 SV=1
          Length = 614

 Score =  355 bits (912), Expect = 2e-97
 Identities = 178/209 (85%), Positives = 178/209 (85%)
 Frame = +1

Query: 49   DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 228
            DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ
Sbjct: 406  DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 465

Query: 229  AINPKLLQLVEXXXXXXXXXXXXXXXXXXXXYSAGKRGGFNTFRDRENYDRGYSSLLKRD 408
            AINPKLLQLVE                    YSAGKRGGFNTFRDRENYDRGYSSLLKRD
Sbjct: 466  AINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDRENYDRGYSSLLKRD 525

Query: 409  FGAKTQNGVYSAANYTNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQYGSNVPNMH 588
            FGAKTQNGVYSAANYTNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQYGSNVPNMH
Sbjct: 526  FGAKTQNGVYSAANYTNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQYGSNVPNMH 585

Query: 589  NGMNQQXXXXXXXXXXXMIGYPMPTGYSQ 675
            NGMNQQ           MIGYPMPTGYSQ
Sbjct: 586  NGMNQQAYAYPATAAAPMIGYPMPTGYSQ 614