miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|114757403|gb|EE867286.1|EE867286 TTGATGATCTGTAAGGGGACTTGCTAATTTGGGAATGTTAGGAAATACACACGTCCTTTTGACACGCTCCATCATTGGGT
GGGTAATAAGGTATACAGATGACGTGTGCTTTTTCTTTGTTTTTTTTCTTCCCCACTTTCAACCTCAATGGTATTCCTAC
AGGGAATGGATAACCATTTTAACTGTATTTTTTGCAGCCCATACCTTCTTGGGAATACAATTGTCTAACTTTTTATTTTT
GGTCTGGCTGTTGTGGTGTGCAAAACCCTGTACATTGCTATTTTGCCACACTGCAACACCTTACAGATGTGGAAGATGTG
AAATTTGTCATCAATTATGACTACCCTAACTCCTCAGAGGATTATATTCATCGAATTGGAAGAACTGCTCGCAGTACCAA
AACAGGCACAGCATACACTTTCTTTACACCTAATAACATAAAGCAAGTGAGCGACCTTATCTCTGTGCTTCGGGAAGCTA
ATCAAGCAATTAATCCTAAGTTGCTTCAGTTGGTCGAAGACAGAGGTTCAGGTCGATCCAGGGGTAGAGGAGGCATGAAG
GATGACCGGCGGGACAGATACTCTGCGGGCAAAAGGGGTGGATTTAATACATTTAGAGACAGGGAAAATTATGACCGCG




Most similar to sp|Q5R4I9|DDX5_PONAB

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q52QH4|NAC68_ORYSJ NAC domain-containing protein 68 OS=Oryza
           sativa subsp. japonica GN=NAC68 PE=2 SV=1
          Length = 318

 Score =  130 bits (328), Expect(2) = 1e-40
 Identities = 58/68 (85%), Positives = 62/68 (91%)
 Frame = +3

Query: 258 RDAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYRFDPWDLPERALF 437
           RDAEAELNLPPGFRFHPTD+ELV HYLCRK A Q LPVPIIAEVDLY+ DPWDLPE+ALF
Sbjct: 13  RDAEAELNLPPGFRFHPTDEELVVHYLCRKVARQPLPVPIIAEVDLYKLDPWDLPEKALF 72

Query: 438 GAREWYFF 461
           G +EWYFF
Sbjct: 73  GRKEWYFF 80



 Score = 57.0 bits (136), Expect(2) = 1e-40
 Identities = 28/40 (70%), Positives = 31/40 (77%), Gaps = 2/40 (5%)
 Frame = +1

Query: 505 AAGNGYWKGTRADKPVPPRG--RTLGIRKALVFLPRKAPR 618
           AAG GYWK T ADKPV P+G  RT+GI+KALVF   KAPR
Sbjct: 96  AAGRGYWKATGADKPVAPKGSARTVGIKKALVFYSGKAPR 135


>sp|Q7EZT1|NAC67_ORYSJ NAC domain-containing protein 67 OS=Oryza
           sativa subsp. japonica GN=NAC67 PE=2 SV=1
          Length = 276

 Score =  130 bits (328), Expect(2) = 3e-39
 Identities = 58/71 (81%), Positives = 63/71 (88%)
 Frame = +3

Query: 249 RRERDAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYRFDPWDLPER 428
           RR RDAEA+LNLPPGFRFHPTD+ELV HYLC +AAG+  PVPIIAE+DLYR DPWDLP R
Sbjct: 6   RRVRDAEADLNLPPGFRFHPTDEELVAHYLCPRAAGRAAPVPIIAELDLYRHDPWDLPHR 65

Query: 429 ALFGAREWYFF 461
           ALFG REWYFF
Sbjct: 66  ALFGRREWYFF 76



 Score = 52.0 bits (123), Expect(2) = 3e-39
 Identities = 25/38 (65%), Positives = 27/38 (71%)
 Frame = +1

Query: 505 AAGNGYWKGTRADKPVPPRGRTLGIRKALVFLPRKAPR 618
           AA +GYWK T ADKPV   GRT GI+KALVF   K PR
Sbjct: 92  AAASGYWKATGADKPVLHNGRTAGIKKALVFYHGKPPR 129


>sp|Q8H115|NA102_ARATH NAC domain-containing protein 102
           OS=Arabidopsis thaliana GN=NAC102 PE=2 SV=1
          Length = 312

 Score =  108 bits (269), Expect(2) = 9e-32
 Identities = 44/65 (67%), Positives = 57/65 (87%)
 Frame = +3

Query: 267 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYRFDPWDLPERALFGAR 446
           +AELNLP GFRFHPTD+ELV+ YLCR+ A + + VP+IAE+DLY+F+PW+LPE AL+G +
Sbjct: 45  KAELNLPAGFRFHPTDEELVKFYLCRRCASEPINVPVIAEIDLYKFNPWELPEMALYGEK 104

Query: 447 EWYFF 461
           EWYFF
Sbjct: 105 EWYFF 109



 Score = 49.7 bits (117), Expect(2) = 9e-32
 Identities = 24/38 (63%), Positives = 29/38 (76%)
 Frame = +1

Query: 505 AAGNGYWKGTRADKPVPPRGRTLGIRKALVFLPRKAPR 618
           AAG GYWK T ADKP+  + +TLGI+KALVF   KAP+
Sbjct: 125 AAGTGYWKATGADKPI-GKPKTLGIKKALVFYAGKAPK 161


>sp|Q9C598|NAC81_ARATH Protein ATAF2 OS=Arabidopsis thaliana
           GN=NAC081 PE=1 SV=1
          Length = 283

 Score =  107 bits (266), Expect(2) = 2e-31
 Identities = 42/65 (64%), Positives = 57/65 (87%)
 Frame = +3

Query: 267 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYRFDPWDLPERALFGAR 446
           ++ELNLP GFRFHPTD+ELV+ YLCRK A +++  P+IAE+DLY+F+PW+LPE +L+G +
Sbjct: 2   KSELNLPAGFRFHPTDEELVKFYLCRKCASEQISAPVIAEIDLYKFNPWELPEMSLYGEK 61

Query: 447 EWYFF 461
           EWYFF
Sbjct: 62  EWYFF 66



 Score = 49.7 bits (117), Expect(2) = 2e-31
 Identities = 24/38 (63%), Positives = 29/38 (76%)
 Frame = +1

Query: 505 AAGNGYWKGTRADKPVPPRGRTLGIRKALVFLPRKAPR 618
           AAG GYWK T ADKP+  + +TLGI+KALVF   KAP+
Sbjct: 82  AAGTGYWKATGADKPI-GKPKTLGIKKALVFYAGKAPK 118


>sp|Q93VY3|NAC72_ARATH NAC domain-containing protein 72
           OS=Arabidopsis thaliana GN=NAC072 PE=2 SV=1
          Length = 297

 Score =  108 bits (270), Expect(2) = 4e-31
 Identities = 44/70 (62%), Positives = 57/70 (81%)
 Frame = +3

Query: 252 RERDAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYRFDPWDLPERA 431
           RE+D  A+L+LPPGFRF+PTD+EL+  YLCRK AG    + +I ++DLY+FDPWDLP +A
Sbjct: 4   REKDPLAQLSLPPGFRFYPTDEELLVQYLCRKVAGYHFSLQVIGDIDLYKFDPWDLPSKA 63

Query: 432 LFGAREWYFF 461
           LFG +EWYFF
Sbjct: 64  LFGEKEWYFF 73



 Score = 47.0 bits (110), Expect(2) = 4e-31
 Identities = 21/37 (56%), Positives = 26/37 (70%)
 Frame = +1

Query: 508 AGNGYWKGTRADKPVPPRGRTLGIRKALVFLPRKAPR 618
           AG+GYWK T  DK +   GR +GI+KALVF   KAP+
Sbjct: 90  AGSGYWKATGTDKIITADGRRVGIKKALVFYAGKAPK 126


>sp|Q9LDY8|NAC55_ARATH NAC domain-containing protein 55
           OS=Arabidopsis thaliana GN=NAC055 PE=2 SV=1
          Length = 317

 Score =  105 bits (262), Expect(2) = 3e-30
 Identities = 45/70 (64%), Positives = 57/70 (81%)
 Frame = +3

Query: 252 RERDAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYRFDPWDLPERA 431
           +E D  A+L+LPPGFRF+PTD+EL+  YLCRKAAG    + +IAE+DLY+FDPW LP +A
Sbjct: 4   QELDPLAQLSLPPGFRFYPTDEELMVEYLCRKAAGHDFSLQLIAEIDLYKFDPWVLPSKA 63

Query: 432 LFGAREWYFF 461
           LFG +EWYFF
Sbjct: 64  LFGEKEWYFF 73



 Score = 47.4 bits (111), Expect(2) = 3e-30
 Identities = 21/37 (56%), Positives = 26/37 (70%)
 Frame = +1

Query: 508 AGNGYWKGTRADKPVPPRGRTLGIRKALVFLPRKAPR 618
           AG+GYWK T  DK +   GR +GI+KALVF   KAP+
Sbjct: 90  AGSGYWKATGTDKVISTEGRRVGIKKALVFYIGKAPK 126


>sp|Q7F2L3|NAC48_ORYSJ NAC domain-containing protein 48 OS=Oryza
           sativa subsp. japonica GN=NAC48 PE=2 SV=1
          Length = 303

 Score =  108 bits (271), Expect(2) = 4e-30
 Identities = 45/63 (71%), Positives = 53/63 (84%)
 Frame = +3

Query: 273 ELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYRFDPWDLPERALFGAREW 452
           +L LPPGFRFHPTD+ELV HYLCR+ AG  + VPIIAE+DLY+FDPW LP  AL+G +EW
Sbjct: 6   DLQLPPGFRFHPTDEELVMHYLCRRCAGLPIAVPIIAEIDLYKFDPWQLPRMALYGEKEW 65

Query: 453 YFF 461
           YFF
Sbjct: 66  YFF 68



 Score = 43.5 bits (101), Expect(2) = 4e-30
 Identities = 22/38 (57%), Positives = 27/38 (71%)
 Frame = +1

Query: 505 AAGNGYWKGTRADKPVPPRGRTLGIRKALVFLPRKAPR 618
           AAG+GYWK T ADKPV    + + I+KALVF   KAP+
Sbjct: 84  AAGSGYWKATGADKPV-GSPKPVAIKKALVFYAGKAPK 120


>sp|Q39013|NAC2_ARATH NAC domain-containing protein 2 OS=Arabidopsis
           thaliana GN=NAC002 PE=2 SV=2
          Length = 289

 Score =  108 bits (270), Expect(2) = 4e-30
 Identities = 45/62 (72%), Positives = 53/62 (85%)
 Frame = +3

Query: 276 LNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYRFDPWDLPERALFGAREWY 455
           L LPPGFRFHPTD+ELV HYLCRK A Q + VPIIAE+DLY++DPW+LP  AL+G +EWY
Sbjct: 5   LQLPPGFRFHPTDEELVMHYLCRKCASQSIAVPIIAEIDLYKYDPWELPGLALYGEKEWY 64

Query: 456 FF 461
           FF
Sbjct: 65  FF 66



 Score = 43.9 bits (102), Expect(2) = 4e-30
 Identities = 21/38 (55%), Positives = 28/38 (73%)
 Frame = +1

Query: 505 AAGNGYWKGTRADKPVPPRGRTLGIRKALVFLPRKAPR 618
           +AG+GYWK T ADKP+    + +GI+KALVF   KAP+
Sbjct: 82  SAGSGYWKATGADKPI-GLPKPVGIKKALVFYAGKAPK 118


>sp|Q53NF7|NAC71_ORYSJ NAC domain-containing protein 71 OS=Oryza
           sativa subsp. japonica GN=NAC71 PE=2 SV=1
          Length = 329

 Score =  107 bits (268), Expect(2) = 1e-29
 Identities = 46/62 (74%), Positives = 52/62 (83%)
 Frame = +3

Query: 276 LNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYRFDPWDLPERALFGAREWY 455
           L LPPGFRFHPTDDELV +YLCRK  G  L  P+IAEVDLY+F+PWDLPERA+ G +EWY
Sbjct: 7   LQLPPGFRFHPTDDELVMYYLCRKCGGLPLAAPVIAEVDLYKFNPWDLPERAMGGEKEWY 66

Query: 456 FF 461
           FF
Sbjct: 67  FF 68



 Score = 42.7 bits (99), Expect(2) = 1e-29
 Identities = 22/38 (57%), Positives = 25/38 (65%)
 Frame = +1

Query: 505 AAGNGYWKGTRADKPVPPRGRTLGIRKALVFLPRKAPR 618
           AAG GYWK T ADKPV    R + I+KALVF   K P+
Sbjct: 84  AAGTGYWKATGADKPV-GSPRAVAIKKALVFYAGKPPK 120


>sp|Q9C932|NAC19_ARATH NAC domain-containing protein 19
           OS=Arabidopsis thaliana GN=NAC019 PE=1 SV=1
          Length = 317

 Score =  103 bits (258), Expect(2) = 3e-29
 Identities = 44/70 (62%), Positives = 56/70 (80%)
 Frame = +3

Query: 252 RERDAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYRFDPWDLPERA 431
           +E D   +L+LPPGFRF+PTD+EL+  YLCRKAAG    + +IAE+DLY+FDPW LP +A
Sbjct: 4   QETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKA 63

Query: 432 LFGAREWYFF 461
           LFG +EWYFF
Sbjct: 64  LFGEKEWYFF 73



 Score = 45.4 bits (106), Expect(2) = 3e-29
 Identities = 20/37 (54%), Positives = 26/37 (70%)
 Frame = +1

Query: 508 AGNGYWKGTRADKPVPPRGRTLGIRKALVFLPRKAPR 618
           AG+GYWK T  DK +   G+ +GI+KALVF   KAP+
Sbjct: 90  AGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPK 126


>sp|Q9ZNU2|NAC18_ARATH NAC domain-containing protein 18
           OS=Arabidopsis thaliana GN=NAC018 PE=2 SV=1
          Length = 320

 Score =  102 bits (253), Expect(2) = 5e-27
 Identities = 45/61 (73%), Positives = 51/61 (83%)
 Frame = +3

Query: 279 NLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYRFDPWDLPERALFGAREWYF 458
           NLPPGFRFHPTD+ELV HYL RKA    LPV IIA+VDLY+FDPW+LP +A FG +EWYF
Sbjct: 16  NLPPGFRFHPTDEELVIHYLKRKADSVPLPVAIIADVDLYKFDPWELPAKASFGEQEWYF 75

Query: 459 F 461
           F
Sbjct: 76  F 76



 Score = 40.0 bits (92), Expect(2) = 5e-27
 Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
 Frame = +1

Query: 505 AAGNGYWKGTRADKPVPPRG----RTLGIRKALVFLPRKAPR 618
           AA +GYWK T  DKPV   G    + +G++KALVF   K P+
Sbjct: 92  AATSGYWKATGTDKPVISTGGGGSKKVGVKKALVFYSGKPPK 133


>sp|O49255|NAC29_ARATH NAC domain-containing protein 29
           OS=Arabidopsis thaliana GN=NAC029 PE=2 SV=1
          Length = 268

 Score = 90.5 bits (223), Expect(2) = 6e-23
 Identities = 37/67 (55%), Positives = 48/67 (71%)
 Frame = +3

Query: 261 DAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYRFDPWDLPERALFG 440
           +  ++  LPPGFRFHPTD+EL+ +YL  +   +  PV II EVD+Y+FDPW LPE+  FG
Sbjct: 2   EVTSQSTLPPGFRFHPTDEELIVYYLRNQTMSKPCPVSIIPEVDIYKFDPWQLPEKTEFG 61

Query: 441 AREWYFF 461
             EWYFF
Sbjct: 62  ENEWYFF 68



 Score = 37.7 bits (86), Expect(2) = 6e-23
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +1

Query: 505 AAGNGYWKGTRADKPVPPRGRTLGIRKALVFLPRKAPR 618
           AA +GYWK T  DK +      +G++KALVF   + P+
Sbjct: 84  AAVSGYWKATGTDKAIHSGSSNVGVKKALVFYKGRPPK 121


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q5R4I9|DDX5_PONAB Probable ATP-dependent RNA helicase DDX5
           OS=Pongo abelii GN=DDX5 PE=2 SV=1
          Length = 614

 Score =  179 bits (453), Expect = 2e-44
 Identities = 91/111 (81%), Positives = 91/111 (81%)
 Frame = +3

Query: 306 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 485
           DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ
Sbjct: 406 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 465

Query: 486 AINPKLLQLVEXXXXXXXXXXXXXXXXXXXXYSAGKRGGFNTFRDRENYDR 638
           AINPKLLQLVE                    YSAGKRGGFNTFRDRENYDR
Sbjct: 466 AINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDRENYDR 516