miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|117470199|gb|EG802418.1|EG802418 GGGGGCTTCTGACTTCCGGGTCTATGTTAACGGTGTGCAGAAGAGACCACAGTCACCAAGAAAATGTCTAAAGTCACGTT
TAAAATCACTCTGACGTCGGATCCCCGGCTACCATACAAAGTACTCAGTGTCCCAGAGAGCACGCCGTTTACAGCCGTGT
TGAAGTTTGCAGCAGAGGAGTTCAAAGTACCAGCAGCCACCAGTGCCATCATTACTAACGACGGTATCGGCATCAACCCA
GCTCAGACAGCAGGGAATGTGTTCCTGAAGCACGGTTCAGAGTTGCGCATCATTCCCAGAGACCGAGTGGGAGGAAGGGG
AGTAGGAACAGACCGACCTTCCTCATCCTCCTCGAAGACCCAATGACTCAGACACACACACACACACCGGCTGAATCATC
ATGTTTCACTTCTGACCTGCAGAACACTCAGTATGTGAGTGTCAGTGTGTTTGTGTATATATTTTCTAGACCTGAAATTA
CTGCACGCACACACACACACACACACACACACCCCTACTCAAAGAGACACACTGCAGCAGCAAGCTTAATTCTGTCTATA
CTGTCTGCACTATCCAAATGCAGCATCACCCCAGGCTGCCCATAGATACTCTCACACTGAAGTAATTGATTACACACACA
CACACACACACTCTAGCGGCTTCAAGAGAAGGACTTGGCGGAAGCTTAGCAGACAATGTGCTTTGAGTTTGTGAATAGTT
GTAGTTTTGTGTACCGATTTTAGTTGTAATGGTAAATGGCTAATAGATCTGCCCCTTTTTGTCCAACATGTGTAGG




Most similar to sp|B9ENM6|UFM1_SALSA

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|B9ENM6|UFM1_SALSA Ubiquitin-fold modifier 1 OS=Salmo salar
           GN=ufm1 PE=3 SV=1
          Length = 100

 Score =  153 bits (387), Expect = 1e-36
 Identities = 82/100 (82%), Positives = 82/100 (82%)
 Frame = +1

Query: 64  MSKVTFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPA 243
           MSKVTFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPA
Sbjct: 1   MSKVTFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPA 60

Query: 244 QTAGNVFLKHGSELXXXXXXXXXXXXXXXXXXSSSSSKTQ 363
           QTAGNVFLKHGSEL                  SSSSSKTQ
Sbjct: 61  QTAGNVFLKHGSELRIIPRDRVGGRGVGTDRPSSSSSKTQ 100