miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|125406319|gb|EL418292.1|EL418292 TCACTGAGCACAGCAGCAACAATGGCTACCTGTTCACTCATTTCCTCAAACACATTTTCTTCTTCTCAAACTCTCCACCT
TCCTTCAACTAACTCCACTCTACTTTCTCTCTCTAGAACCTTCTCTCTCCGTACACCTCACACTCACCGTCGCATCTCTT
CCATCACCACCGCTACCTACTCTCCGGCACCGGAATCTCACCGGAACTCCTCCTCCTCCGTCACCAAATTCCTTGACTCC
TGCTTCGTATTTTGCACTTCTGTAGCACTCTCTGTTTCTGTATTTGTTACAGATGTAGATACAGCTGCTGCGTTTGTCGT
CGCTACGCCTCGGAAGTTGCAGACGGATGAACTCGCTACTGTTAGTCTGTTTCAGGAGAATACTCCGTCTGTTGTGTATA
TTACTAATCTAGCTTCTAGGCAGGATGCGTTTACTCTGGACGTGTTGGAGGTGCCTCAAGGATCTGGATCAGGCTTTGTT
TGGGATGACAAAGGCCATATTGTCACAAATTATCATGTTATCAGAGGGGCATCCGATCTTAGGGTAACTCTTGGTGACCA
GACCACTTATGATGCAAAAGTTGTTGGGTTTGACCAAGATAAAGATGTTGCAGTATTAAGTATTGATGCACCAAAAGACA
AATTGAGACCCATACCAGTTGGCGTCTCGGCTGACTTGCTTGTTGGCCAAAAAGTGTTTGCTATCGGAAACCCATTTGGG
CTCGATCACACACTCACAACTGGCGTTATCAGTGGACTGAGGAGAGAAATAAGCTCTGCGGCAACCGGGCGTCCAATCCA
AGATGTCATCCAGACAGACGCTGCAATCAACCCTGGTAATAGTGGTGG




Most similar to sp|O22609|DEGP1_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O22609|DEGP1_ARATH Protease Do-like 1, chloroplastic
           OS=Arabidopsis thaliana GN=DEGP1 PE=1 SV=2
          Length = 439

 Score =  330 bits (845), Expect = 1e-89
 Identities = 172/203 (84%), Positives = 177/203 (87%), Gaps = 2/203 (0%)
 Frame = +1

Query: 244 FVFCTSVALXXXXXXXXXXXXXXXXXX--TPRKLQTDELATVSLFQENTPSVVYITNLAS 417
           F+ CTSVAL                    TP+KLQTDELATV LFQENTPSVVYITNLA 
Sbjct: 81  FLLCTSVALSFSLFAASPAVESASAFVVSTPKKLQTDELATVRLFQENTPSVVYITNLAV 140

Query: 418 RQDAFTLDVLEVPQGSGSGFVWDDKGHIVTNYHVIRGASDLRVTLGDQTTYDAKVVGFDQ 597
           RQDAFTLDVLEVPQGSGSGFVWD +GHIVTNYHVIRGASDLRVTL DQTT+DAKVVGFDQ
Sbjct: 141 RQDAFTLDVLEVPQGSGSGFVWDKQGHIVTNYHVIRGASDLRVTLADQTTFDAKVVGFDQ 200

Query: 598 DKDVAVLSIDAPKDKLRPIPVGVSADLLVGQKVFAIGNPFGLDHTLTTGVISGLRREISS 777
           DKDVAVL IDAPK+KLRPIPVGVSADLLVGQKVFAIGNPFGLDHTLTTGVISGLRREISS
Sbjct: 201 DKDVAVLRIDAPKNKLRPIPVGVSADLLVGQKVFAIGNPFGLDHTLTTGVISGLRREISS 260

Query: 778 AATGRPIQDVIQTDAAINPGNSG 846
           AATGRPIQDVIQTDAAINPGNSG
Sbjct: 261 AATGRPIQDVIQTDAAINPGNSG 283