miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|13147622|gb|BG341082.1|BG341082 GCCGACCCCCTCCTGCTCCAGCGTCATGCCACGGCCCAGCTCCCTGTCAGACAAGACCCAGCTCCACAGCAGGTGGCTGG
ACTCGTCGCGGTGTCTCATGCAGCAGGGCATCAAGGCCGGGGACGCACTCTGGCTGCGCTTCAAGTACTACAGCTTCTTC
GATTTGGATCCCAAGACAGACCCCGTGCGGCTGACACAGCTGTATGAGCAGGCCCGGTGGGACCTGCTGCTGGAGGAGAT
TGACTGCACCGAGGAGGAGATGATGGTGTTTGCCGCCCTGCAGTACCACATCAACAAGCTGTCCCAGAGCGGGGAGGTGG
GGGAGCCGGCTGGCACAGACCCAGGGCTGGACGACCTGGATGTGGCCCTGAGCAACCTGGAGGTGAAGCTGGAGGGGTCG
GCGCCCACAGATGTGCTGGACAGCCTCACCACCATCCCAGAGCTCAAGGACCATCTCCGAATCTTTCGGCCCGGAAGCTG
ACCCTGAAGGGCTACCGCCAACACTGGGTGGTGTTCAAGGAGACCACACTGTCCTACTACAAGAGCCAGGACGAGGCCCC
TGGGGACCCCATTCAGCAGCTCAACCTCAAGGGGCTGTGAGGGTGGTTCCCCGATGTTTAACGTCTCCGGCAAGAAGTTC
TGGCATTAAAACTCCTTATTGGCCTCCCCCTTGAGGGGCATGAAGTTGGGATCTACCTTGCGGTGCAGCCTGAGCAGAAT
ATTGCCCGTGGAATTGGTGGTTGCGGCTTGGCCTTCCAAGGCGGACCGGGCGAAGGAGGTAACCCAGAGGGGGCCACCGG
CTTCTCAACCGAGACACGGGCATGGGCCCGGAACACCCC




Most similar to sp|Q86UX7|URP2_HUMAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q86UX7|URP2_HUMAN Fermitin family homolog 3 OS=Homo sapiens
           GN=FERMT3 PE=1 SV=1
          Length = 667

 Score =  310 bits (793), Expect = 1e-83
 Identities = 164/217 (75%), Positives = 172/217 (79%), Gaps = 4/217 (1%)
 Frame = +2

Query: 2   PTPSCSSVMPRPSSLSDKTQLHSRWLDSSRCLMQQGIKAGDALWLRFKYYSFFDLDPKTD 181
           P P     +PRPSSLSDKTQLHSRWLDSSRCLMQQGIKAGDALWLRFKYYSFFDLDPKTD
Sbjct: 205 PDPLLLQRLPRPSSLSDKTQLHSRWLDSSRCLMQQGIKAGDALWLRFKYYSFFDLDPKTD 264

Query: 182 PVRLTQLYEQARWDLLLEEIDCTEEEMMVFAALQYHINKLSQSGEVGEPAGTDPGLDDLD 361
           PVRLTQLYEQARWDLLLEEIDCTEEEMMVFAALQYHINKLSQSGEVGEPAGTDPGLDDLD
Sbjct: 265 PVRLTQLYEQARWDLLLEEIDCTEEEMMVFAALQYHINKLSQSGEVGEPAGTDPGLDDLD 324

Query: 362 VALSNLEVKLEGSAPTDVLDSLTTIPELKDHLRIFRPGS*P*RATA---NTGW-CSRRPH 529
           VALSNLEVKLEGSAPTDVLDSLTTIPELKDHLRIFR    P + T       W   +   
Sbjct: 325 VALSNLEVKLEGSAPTDVLDSLTTIPELKDHLRIFRIPRRPRKLTLKGYRQHWVVFKETT 384

Query: 530 CPTTRARTRPLGTPFSSSTSRGCEGGSPMFNVSGKKF 640
               +++    G P      +GCE   P  NVSG+KF
Sbjct: 385 LSYYKSQDEAPGDPIQQLNLKGCE-VVPDVNVSGQKF 420



 Score =  105 bits (263), Expect = 3e-22
 Identities = 61/94 (64%), Positives = 66/94 (70%)
 Frame = +1

Query: 472 RKLTLKGYRQHWVVFKETTLSYYKSQDEAPGDPIQQLNLKGL*GWFPDV*RLRQEVLALK 651
           RKLTLKGYRQHWVVFKETTLSYYKSQDEAPGDPIQQLNLKG     PDV  +  +   +K
Sbjct: 366 RKLTLKGYRQHWVVFKETTLSYYKSQDEAPGDPIQQLNLKGC-EVVPDV-NVSGQKFCIK 423

Query: 652 LLIGLPLEGHEVGIYLAVQPEQNIARGIGGCGLA 753
           LL+  P    E  IYL  Q EQ  AR + GC LA
Sbjct: 424 LLVPSPEGMSE--IYLRCQDEQQYARWMAGCRLA 455