miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|141650917|gb|CJ905447.1|CJ905447 TGGGGGAGCCATGAAGGGCGTCACAAAAGCCATGTCACAGATGAACAGGCAGATGAATCTACCAGCACTCCAGAAGATAA
TGCGGGACTTTGAGATGCAAAACGAGAAGATGGAAATGGTCAGCGAGGTTATGGGTGATGCCATCGACGACGCCTTGGAG
GGTGATGAGGAGGAGGAAGAAACAGAAGAGCTAGTTAGCCAGGTCCTTGACGAAATCGGCATCGACATCAACTCTGAGCT
TGTCAAGGCCCCGGCTACCGCAGTCGCCATGCCGGTTGCAGCGGGAAAGGCGCCTGTTCAAGCTGAAGCTGCGGGCGGGA
TGGACGGTGGAATAGACGATGACTTGCAGGCACGGCTTGATAACCTGAGGAAGATGTGAACATTGACGGATTGTCCACGC
CCGCGCAATTCTCTGTCTGTAGTTTCGTACCATAAATGCCACTCCGGCAAATCTCTTGACGTATCATTTGCAGTGTGTTT
GGCATTGATCATCTGTATATAGACAGATCATCATATTTCAATAAATCACATACTCCCTCCGTCCTAAAATTCTTATCTTA
GATTTGTCTAGATACGGATGTATCTAATACTAAAATGTGATTTGATATATCCGTATTTAGACAAATCTAAGACAAGAATT
TTAGGACGGAGGGAGTACTAGGCTTGGTCTTTCTAGTTCCATTTGCCGCACTCTCGTCATGATTCTTATTTAGATGAAAT
AGCAGTAAAGTAGTGACCTAAACGTTGGATA




Most similar to sp|Q9SKI2|VPS2A_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9SKI2|VPS2A_ARATH Vacuolar protein sorting-associated protein 2
           homolog 1 OS=Arabidopsis thaliana GN=VPS2.1 PE=2 SV=2
          Length = 225

 Score =  125 bits (315), Expect = 2e-28
 Identities = 73/125 (58%), Positives = 76/125 (60%)
 Frame = +2

Query: 2   GGAMKGVTKAMSQMNRQMNLPALQKIMRDFEMQNEKMEMVSEVMGDAIDDALXXXXXXXX 181
           G AMKGVTKAM QMNRQMNLP+LQKIM++FE QNEKMEMVSEVMGDAIDDAL        
Sbjct: 101 GEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVSEVMGDAIDDALEGDEEEEE 160

Query: 182 XXXLVSQVLDEIGIDINSELXXXXXXXXXXXXXXXXXXXQAEAAXXXXXXXXXXLQARLD 361
              LVSQVLDEIGIDIN EL                                  LQARLD
Sbjct: 161 TEDLVSQVLDEIGIDINQELVNAPSGAVAVPAAKNKVVQAEATGAEDSGGIDSDLQARLD 220

Query: 362 NLRKM 376
           NLRKM
Sbjct: 221 NLRKM 225